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Detect error in JSON.org

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Anthony Scemama 2021-05-24 15:01:04 +02:00
parent 32a44df569
commit c5779f17f9
2 changed files with 72 additions and 63 deletions
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2
trex.json
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@ -73,7 +73,7 @@
"mo": { "mo": {
"type" : [ "str" , [] ] "type" : [ "str" , [] ]
, "num" : [ "int" , [] ] , "num" : [ "int" , [] ]
, "coef" : [ "float", [ "ao.num", "mo.num" ] ] , "coefficient" : [ "float", [ "mo.num", "ao.num" ] ]
, "class" : [ "str" , [ "mo.num" ] ] , "class" : [ "str" , [ "mo.num" ] ]
, "symmetry" : [ "str" , [ "mo.num" ] ] , "symmetry" : [ "str" , [ "mo.num" ] ]
, "occupation" : [ "float", [ "mo.num" ] ] , "occupation" : [ "float", [ "mo.num" ] ]

43
trex.org
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@ -186,10 +186,10 @@ written in C.
#+NAME: basis #+NAME: basis
| ~type~ | ~str~ | | Type of basis set: "Gaussian" or "Slater" | | ~type~ | ~str~ | | Type of basis set: "Gaussian" or "Slater" |
| ~shell_num~ | ~int~ | | Total Number of shells | | ~shell_num~ | ~int~ | | Total Number of shells |
| ~shell_factor~ | ~float~ | ~(basis.shell_num)~ | Normalization factor of the shell |
| ~shell_center~ | ~int~ | ~(basis.shell_num)~ | Nucleus on which the shell is centered | | ~shell_center~ | ~int~ | ~(basis.shell_num)~ | Nucleus on which the shell is centered |
| ~shell_ang_mom~ | ~int~ | ~(basis.shell_num)~ | Angular momentum ~0:S, 1:P, 2:D, ...~ | | ~shell_ang_mom~ | ~int~ | ~(basis.shell_num)~ | Angular momentum ~0:S, 1:P, 2:D, ...~ |
| ~shell_prim_num~ | ~int~ | ~(basis.shell_num)~ | Number of primitives in the shell | | ~shell_prim_num~ | ~int~ | ~(basis.shell_num)~ | Number of primitives in the shell |
| ~shell_factor~ | ~float~ | ~(basis.shell_num)~ | Normalization factor of the shell |
| ~prim_index~ | ~int~ | ~(basis.shell_num)~ | Index of the first primitive in the complete list | | ~prim_index~ | ~int~ | ~(basis.shell_num)~ | Index of the first primitive in the complete list |
| ~prim_num~ | ~int~ | | Total number of primitives | | ~prim_num~ | ~int~ | | Total number of primitives |
| ~exponent~ | ~float~ | ~(basis.prim_num)~ | Exponents of the primitives | | ~exponent~ | ~float~ | ~(basis.prim_num)~ | Exponents of the primitives |
@ -262,24 +262,27 @@ written in C.
#+NAME: ao #+NAME: ao
| ~cartesian~ | ~int~ | | ~1~: true, ~0~: false | | ~cartesian~ | ~int~ | | ~1~: true, ~0~: false |
| ~num~ | ~int~ | | Total number of atomic orbitals | | ~num~ | ~int~ | | Total number of atomic orbitals |
| ~shell~ | ~int~ | ~ao.num~ | basis set shell for each AO | | ~shell~ | ~int~ | ~(ao.num)~ | basis set shell for each AO |
| ~normalization~ | ~float~ | ~ao.num~ | Normalization factors | | ~normalization~ | ~float~ | ~(ao.num)~ | Normalization factors |
#+CALL: json(data=ao, title="ao") #+CALL: json(data=ao, title="ao")
#+RESULTS: #+RESULTS:
:results: :results:
#+begin_src python :tangle trex.json #+begin_src python :tangle trex.json
"ao": { "ao": {
"num" : [ "int" , [] ] "cartesian" : [ "int" , [] ]
, "cartesian" : [ "int" , [] ] , "num" : [ "int" , [] ]
, "shell" : [ "int" , [] ] , "shell" : [ "int" , [ "ao.num" ] ]
, "normalization" : [ "float", [] ] , "normalization" : [ "float", [ "ao.num" ] ]
} , } ,
#+end_src #+end_src
:end: :end:
** One-electron integrals ** One-electron integrals
:PROPERTIES:
:CUSTOM_ID: ao_one_e
:END:
- \[ \hat{V}_{\text{ne}} = \sum_{A=1}^{N_\text{nucl}} - \[ \hat{V}_{\text{ne}} = \sum_{A=1}^{N_\text{nucl}}
\sum_{i=1}^{N_\text{elec}} \frac{-Z_A }{\vert \mathbf{R}_A - \sum_{i=1}^{N_\text{elec}} \frac{-Z_A }{\vert \mathbf{R}_A -
@ -318,6 +321,9 @@ written in C.
:end: :end:
** Two-electron integrals ** Two-electron integrals
:PROPERTIES:
:CUSTOM_ID: ao_two_e
:END:
The two-electron integrals for a two-electron operator $\hat{O}$ are The two-electron integrals for a two-electron operator $\hat{O}$ are
\[ \langle p q \vert \hat{O} \vert r s \rangle \] in physicists \[ \langle p q \vert \hat{O} \vert r s \rangle \] in physicists
@ -355,7 +361,7 @@ written in C.
#+NAME: mo #+NAME: mo
| ~type~ | ~str~ | | String identify the set of MOs | | ~type~ | ~str~ | | String identify the set of MOs |
| ~num~ | ~int~ | | Number of MOs | | ~num~ | ~int~ | | Number of MOs |
| ~coef~ | ~float~ | ~(ao.num, mo.num)~ | MO coefficients | | ~coefficient~ | ~float~ | ~(ao.num, mo.num)~ | MO coefficients |
| ~class~ | ~str~ | ~(mo.num)~ | Core, Inactive, Active, Virtual, Deleted | | ~class~ | ~str~ | ~(mo.num)~ | Core, Inactive, Active, Virtual, Deleted |
| ~symmetry~ | ~str~ | ~(mo.num)~ | Symmetry in the point group | | ~symmetry~ | ~str~ | ~(mo.num)~ | Symmetry in the point group |
| ~occupation~ | ~float~ | ~(mo.num)~ | Occupation number | | ~occupation~ | ~float~ | ~(mo.num)~ | Occupation number |
@ -368,7 +374,7 @@ written in C.
"mo": { "mo": {
"type" : [ "str" , [] ] "type" : [ "str" , [] ]
, "num" : [ "int" , [] ] , "num" : [ "int" , [] ]
, "coef" : [ "float", [ "ao.num", "mo.num" ] ] , "coefficient" : [ "float", [ "mo.num", "ao.num" ] ]
, "class" : [ "str" , [ "mo.num" ] ] , "class" : [ "str" , [ "mo.num" ] ]
, "symmetry" : [ "str" , [ "mo.num" ] ] , "symmetry" : [ "str" , [ "mo.num" ] ]
, "occupation" : [ "float", [ "mo.num" ] ] , "occupation" : [ "float", [ "mo.num" ] ]
@ -378,9 +384,9 @@ written in C.
** One-electron integrals ** One-electron integrals
The operators as the same as those defined in the AO one-electron The operators as the same as those defined in the
integrals section. Here, the integrals are given in the basis of [[ao_one_e][AO one-electron integrals section]]. Here, the integrals are given in
molecular orbitals. the basis of molecular orbitals.
#+NAME: mo_1e_int #+NAME: mo_1e_int
| ~overlap~ | ~float~ | ~(mo.num, mo.num)~ | $\langle i \vert j \rangle$ | | ~overlap~ | ~float~ | ~(mo.num, mo.num)~ | $\langle i \vert j \rangle$ |
@ -408,9 +414,9 @@ written in C.
** Two-electron integrals ** Two-electron integrals
The operators as the same as those defined in the AO two-electron The operators as the same as those defined in the
integrals section. Here, the integrals are given in the basis of [[ao_two_e][AO two-electron integrals section]]. Here, the integrals are given in
molecular orbitals. the basis of molecular orbitals.
#+NAME: mo_2e_int #+NAME: mo_2e_int
| ~eri~ | ~float sparse~ | ~(mo.num, mo.num, mo.num, mo.num)~ | Electron repulsion integrals | | ~eri~ | ~float sparse~ | ~(mo.num, mo.num, mo.num, mo.num)~ | Electron repulsion integrals |
@ -486,6 +492,9 @@ for line in data:
dims = [ '"'+x.strip()+'"' for x in dims.split(',') ] dims = [ '"'+x.strip()+'"' for x in dims.split(',') ]
dims.reverse() dims.reverse()
dims = "[ " + ", ".join(dims) + " ]" dims = "[ " + ", ".join(dims) + " ]"
else:
if dims.strip() != "":
dims = "ERROR"
else: else:
dims = "[]" dims = "[]"
buffer = fmt % (indent, name, typ.ljust(f2), dims.ljust(f3)) buffer = fmt % (indent, name, typ.ljust(f2), dims.ljust(f3))