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trexio/docker/hdf5-on-docker/install_hdf5_centos.sh

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# ===========================================================================
# Script from the hdf5-manylinux repo:
# https://github.com/h5py/hdf5-manylinux/blob/master/install_hdf5.sh
# ===========================================================================
set -euo pipefail
echo "Installing zlib with yum"
yum -y install zlib-devel
pushd /tmp
# This seems to be needed to find libsz.so.2
ldconfig
echo "Downloading & unpacking HDF5 ${HDF5_VERSION}"
# Remove trailing .*, to get e.g. '1.12' ↓
curl -fsSLO "https://www.hdfgroup.org/ftp/HDF5/releases/hdf5-${HDF5_VERSION%.*}/hdf5-$HDF5_VERSION/src/hdf5-$HDF5_VERSION.tar.gz"
tar -xzvf hdf5-$HDF5_VERSION.tar.gz
pushd hdf5-$HDF5_VERSION
chmod u+x autogen.sh
echo "Configuring, building & installing HDF5 ${HDF5_VERSION} to ${HDF5_DIR}"
./configure --prefix $HDF5_DIR --enable-build-mode=production --with-szlib
make -j $(nproc)
make install
popd
# Clean up to limit the size of the Docker image
echo "Cleaning up unnecessary files"
rm -r hdf5-$HDF5_VERSION
rm hdf5-$HDF5_VERSION.tar.gz
yum -y erase zlib-devel