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add Docker files and bash scripts to build HDF5 1.12 in manylinux containers
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15
docker/hdf5-on-docker/Dockerfile_2010_x86_64
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docker/hdf5-on-docker/Dockerfile_2010_x86_64
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# ===========================================================================
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# Script from the hdf5-manylinux repo:
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# https://github.com/h5py/hdf5-manylinux/blob/master/Dockerfile_x86_64
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# ===========================================================================
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FROM quay.io/pypa/manylinux2010_x86_64
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ENV HDF5_DIR /usr/local
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ENV HDF5_VERSION 1.12.1
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COPY install_libaec.sh /tmp/install_libaec.sh
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RUN bash /tmp/install_libaec.sh
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COPY install_hdf5_centos.sh /tmp/install_hdf5.sh
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RUN bash /tmp/install_hdf5.sh
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docker/hdf5-on-docker/Dockerfile_2014_aarch64
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docker/hdf5-on-docker/Dockerfile_2014_aarch64
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# ===========================================================================
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# Script from the hdf5-manylinux repo:
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# https://github.com/h5py/hdf5-manylinux/blob/master/Dockerfile_aarch64
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# ===========================================================================
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FROM quay.io/pypa/manylinux2014_aarch64
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ENV HDF5_DIR /usr/local
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ENV HDF5_VERSION 1.12.1
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COPY install_libaec.sh /tmp/install_libaec.sh
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RUN bash /tmp/install_libaec.sh
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COPY install_hdf5_centos.sh /tmp/install_hdf5.sh
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RUN bash /tmp/install_hdf5.sh
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docker/hdf5-on-docker/Dockerfile_2014_x86_64
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docker/hdf5-on-docker/Dockerfile_2014_x86_64
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FROM quay.io/pypa/manylinux2014_x86_64
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ENV HDF5_DIR /usr/local
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ENV HDF5_VERSION 1.12.1
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COPY install_libaec.sh /tmp/install_libaec.sh
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RUN bash /tmp/install_libaec.sh
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COPY install_hdf5_centos.sh /tmp/install_hdf5.sh
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RUN bash /tmp/install_hdf5.sh
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docker/hdf5-on-docker/Dockerfile_2_24_aarch64
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docker/hdf5-on-docker/Dockerfile_2_24_aarch64
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FROM quay.io/pypa/manylinux_2_24_aarch64
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ENV HDF5_DIR /usr/local
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ENV HDF5_VERSION 1.12.1
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COPY install_libaec.sh /tmp/install_libaec.sh
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RUN bash /tmp/install_libaec.sh
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COPY install_hdf5_debian.sh /tmp/install_hdf5.sh
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RUN bash /tmp/install_hdf5.sh
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docker/hdf5-on-docker/Dockerfile_2_24_x86_64
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docker/hdf5-on-docker/Dockerfile_2_24_x86_64
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FROM quay.io/pypa/manylinux_2_24_x86_64
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ENV HDF5_DIR /usr/local
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ENV HDF5_VERSION 1.12.1
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COPY install_libaec.sh /tmp/install_libaec.sh
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RUN bash /tmp/install_libaec.sh
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COPY install_hdf5_debian.sh /tmp/install_hdf5.sh
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RUN bash /tmp/install_hdf5.sh
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docker/hdf5-on-docker/build_images.sh
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docker/hdf5-on-docker/build_images.sh
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#!/bin/bash
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set -x
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set -e
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# currently cannot build ARM64 images on the AMD64 platform due to the error:
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# standard_init_linux.go:219: exec user process caused: exec format error
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#for tag in 2010_x86_64 2014_x86_64 2_24_x86_64 2014_aarch64 2_24_aarch64
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# build only x86_64 images
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for tag in 2010_x86_64 2014_x86_64 2_24_x86_64
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do
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echo "Building image on ${tag} platform"
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docker build -t hdf5_1_12_on_${tag} . -f Dockerfile_${tag}
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done
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docker/hdf5-on-docker/install_hdf5_centos.sh
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docker/hdf5-on-docker/install_hdf5_centos.sh
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# ===========================================================================
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# Script from the hdf5-manylinux repo:
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# https://github.com/h5py/hdf5-manylinux/blob/master/install_hdf5.sh
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# ===========================================================================
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set -euo pipefail
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echo "Installing zlib with yum"
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yum -y install zlib-devel
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pushd /tmp
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# This seems to be needed to find libsz.so.2
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ldconfig
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echo "Downloading & unpacking HDF5 ${HDF5_VERSION}"
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# Remove trailing .*, to get e.g. '1.12' ↓
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curl -fsSLO "https://www.hdfgroup.org/ftp/HDF5/releases/hdf5-${HDF5_VERSION%.*}/hdf5-$HDF5_VERSION/src/hdf5-$HDF5_VERSION.tar.gz"
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tar -xzvf hdf5-$HDF5_VERSION.tar.gz
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pushd hdf5-$HDF5_VERSION
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chmod u+x autogen.sh
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echo "Configuring, building & installing HDF5 ${HDF5_VERSION} to ${HDF5_DIR}"
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./configure --prefix $HDF5_DIR --enable-build-mode=production --with-szlib
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make -j $(nproc)
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make install
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popd
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# Clean up to limit the size of the Docker image
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echo "Cleaning up unnecessary files"
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rm -r hdf5-$HDF5_VERSION
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rm hdf5-$HDF5_VERSION.tar.gz
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yum -y erase zlib-devel
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32
docker/hdf5-on-docker/install_hdf5_debian.sh
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docker/hdf5-on-docker/install_hdf5_debian.sh
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# ===========================================================================
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# Debian-adapted script from the hdf5-manylinux repo:
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# https://github.com/h5py/hdf5-manylinux/blob/master/install_hdf5.sh
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# ===========================================================================
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set -euo pipefail
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pushd /tmp
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# This seems to be needed to find libsz.so.2
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ldconfig
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echo "Downloading & unpacking HDF5 ${HDF5_VERSION}"
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# Remove trailing .*, to get e.g. '1.12' ↓
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curl -fsSLO "https://www.hdfgroup.org/ftp/HDF5/releases/hdf5-${HDF5_VERSION%.*}/hdf5-$HDF5_VERSION/src/hdf5-$HDF5_VERSION.tar.gz"
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tar -xzvf hdf5-$HDF5_VERSION.tar.gz
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pushd hdf5-$HDF5_VERSION
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chmod u+x autogen.sh
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echo "Configuring, building & installing HDF5 ${HDF5_VERSION} to ${HDF5_DIR}"
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./configure --prefix $HDF5_DIR --enable-build-mode=production --with-szlib
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make -j $(nproc)
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make install
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popd
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# Clean up to limit the size of the Docker image
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echo "Cleaning up unnecessary files"
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rm -r hdf5-$HDF5_VERSION
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rm hdf5-$HDF5_VERSION.tar.gz
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apt-get -y remove zlib1g-dev
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28
docker/hdf5-on-docker/install_libaec.sh
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28
docker/hdf5-on-docker/install_libaec.sh
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# ===========================================================================
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# Script from the hdf5-manylinux repo:
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# https://github.com/h5py/hdf5-manylinux/blob/master/install_libaec.sh
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# ===========================================================================
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# libaec implements szip compression, so the optional szip filter can be built
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# in HDF5.
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set -euo pipefail
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pushd /tmp
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aec_version="1.0.4"
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echo "Downloading libaec"
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# The URL includes a hash, so it needs to change if the version does
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curl -fsSLO https://gitlab.dkrz.de/k202009/libaec/uploads/ea0b7d197a950b0c110da8dfdecbb71f/libaec-${aec_version}.tar.gz
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tar zxf libaec-$aec_version.tar.gz
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echo "Building & installing libaec"
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pushd libaec-$aec_version
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./configure
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make
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make install
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# Clean up the files from the build
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popd
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rm -r libaec-$aec_version libaec-$aec_version.tar.gz
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