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quantum_package/scripts/ezfio_interface/qp_edit_template

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open Qputils;;
open Qptypes;;
open Core.Std;;
(** Interactive editing of the input.
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WARNING
This file is autogenerad by
`${{QP_ROOT}}/script/ezfio_interface/ei_handler.py`
*)
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(** Keywords used to define input sections *)
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type keyword =
| Ao_basis
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| Determinants_by_hand
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| Electrons
| Mo_basis
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| Nuclei
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{keywords}
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;;
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let keyword_to_string = function
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| Ao_basis -> "AO basis"
| Determinants_by_hand -> "Determinants_by_hand"
| Electrons -> "Electrons"
| Mo_basis -> "MO basis"
| Nuclei -> "Molecule"
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{keywords_to_string}
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;;
(** Create the header of the temporary file *)
let file_header filename =
Printf.sprintf "
==================================================================
Quantum Package
==================================================================
Editing file `%s`
" filename
;;
(** Creates the header of a section *)
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let make_header kw =
let s = keyword_to_string kw in
let l = String.length s in
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"\n\n"^s^"\n"^(String.init l ~f:(fun _ -> '='))^"\n\n"
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;;
(** Returns the rst string of section [s] *)
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let get s =
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let header = (make_header s) in
let f (read,to_rst) =
match read () with
| Some text -> header ^ (Rst_string.to_string (to_rst text))
| None -> ""
in
let rst =
try
begin
let open Input in
match s with
| Mo_basis ->
f Mo_basis.(read, to_rst)
| Electrons ->
f Electrons.(read, to_rst)
| Nuclei ->
f Nuclei.(read, to_rst)
| Ao_basis ->
f Ao_basis.(read, to_rst)
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| Determinants_by_hand ->
f Determinants_by_hand.(read, to_rst)
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{section_to_rst}
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end
with
| Sys_error msg -> (Printf.eprintf "Info: %s\n%!" msg ; "")
in
rst
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;;
(** Applies the changes from the string [str] corresponding to section [s] *)
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let set str s =
let header = (make_header s) in
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match String.substr_index ~pos:0 ~pattern:header str with
| None -> ()
| Some idx ->
begin
let index_begin = idx + (String.length header) in
let index_end =
match ( String.substr_index ~pos:(index_begin+(String.length header)+1)
~pattern:"==" str) with
| Some i -> i
| None -> String.length str
in
let l = index_end - index_begin in
let str = String.sub ~pos:index_begin ~len:l str
|> Rst_string.of_string
in
let write (of_rst,w) s =
try
match of_rst str with
| Some data -> w data
| None -> ()
with
| _ -> (Printf.eprintf "Info: Read error in %s\n%!"
(keyword_to_string s); ignore (of_rst str) )
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in
let open Input in
match s with
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{write}
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| Electrons -> write Electrons.(of_rst, write) s
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| Determinants_by_hand -> write Determinants_by_hand.(of_rst, write) s
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| Nuclei -> write Nuclei.(of_rst, write) s
| Ao_basis -> () (* TODO *)
| Mo_basis -> () (* TODO *)
end
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;;
(** Creates the temporary file for interactive editing *)
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let create_temp_file ezfio_filename fields =
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let temp_filename = Filename.temp_file "qp_edit_" ".rst" in
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begin
Out_channel.with_file temp_filename ~f:(fun out_channel ->
(file_header ezfio_filename) :: (List.map ~f:get fields)
|> String.concat ~sep:"\n"
|> Out_channel.output_string out_channel
)
end
; temp_filename
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;;
let run check_only ezfio_filename =
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(* Open EZFIO *)
if (not (Sys.file_exists_exn ezfio_filename)) then
failwith (ezfio_filename^" does not exists");
Ezfio.set_file ezfio_filename;
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(*
let output = (file_header ezfio_filename) :: (
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List.map ~f:get [
Ao_basis ;
Mo_basis ;
])
in
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String.concat output
|> print_string
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*)
let tasks = [
Nuclei ;
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Ao_basis;
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Electrons ;
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{tasks}
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Mo_basis;
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Determinants_by_hand ;
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]
in
(* Create the temp file *)
let temp_filename = create_temp_file ezfio_filename tasks in
(* Open the temp file with external editor *)
let editor =
match Sys.getenv "EDITOR" with
| Some editor -> editor
| None -> "vi"
in
match check_only with
| true -> ()
| false ->
Printf.sprintf "%s %s" editor temp_filename
|> Sys.command_exn
;
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(* Re-read the temp file *)
let temp_string =
In_channel.with_file temp_filename ~f:(fun in_channel ->
In_channel.input_all in_channel)
in
List.iter ~f:(fun x -> set temp_string x) tasks;
(* Remove temp_file *)
Sys.remove temp_filename;
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;;
(** Create a backup file in case of an exception *)
let create_backup ezfio_filename =
Printf.sprintf "
rm -f %s/backup.tgz ;
tar -zcf .backup.tgz %s && mv .backup.tgz %s/backup.tgz
"
ezfio_filename ezfio_filename ezfio_filename
|> Sys.command_exn
;;
(** Restore the backup file when an exception occuprs *)
let restore_backup ezfio_filename =
Printf.sprintf "tar -zxf %s/backup.tgz"
ezfio_filename
|> Sys.command_exn
;;
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let spec =
let open Command.Spec in
empty
+> flag "-c" no_arg
~doc:"Checks the input data"
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(*
+> flag "o" (optional string)
~doc:"Prints output data"
*)
+> anon ("ezfio_file" %: string)
;;
let command =
Command.basic
~summary: "Quantum Package command"
~readme:(fun () ->
"
Edit input data
")
spec
(* (fun i o ezfio_file () -> *)
(*fun ezfio_file () ->
try
run ezfio_file
with
| _ msg -> print_string ("\n\nError\n\n"^msg^"\n\n")
*)
(fun c ezfio_file () ->
try
run c ezfio_file ;
(* create_backup ezfio_file; *)
with
| Failure exc
| Invalid_argument exc as e ->
begin
Printf.eprintf "=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-\n\n";
Printf.eprintf "%s\n\n" exc;
Printf.eprintf "=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-\n\n";
(* restore_backup ezfio_file; *)
raise e
end
| Assert_failure (file, line, ch) as e ->
begin
Printf.eprintf "=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-\n\n";
Printf.eprintf "Assert error in file $QPACKAGE_ROOT/ocaml/%s, line %d, character %d\n\n" file line ch;
Printf.eprintf "=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-\n\n";
(* restore_backup ezfio_file; *)
raise e
end
)
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;;
let () =
Command.run command;
exit 0
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;;