2014-10-26 12:46:17 +01:00
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open Qputils;;
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open Qptypes;;
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open Core.Std;;
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2014-11-03 19:33:06 +01:00
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let file_header filename = Printf.sprintf
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2014-10-29 00:12:45 +01:00
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"
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==================================================================
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Quantum Package
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==================================================================
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Editing file `%s`
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" filename
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2014-10-26 12:46:17 +01:00
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type keyword =
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| Ao_basis
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| Bielec_integrals
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2014-10-28 17:16:51 +01:00
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| Cisd_sc2
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| Determinants
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| Electrons
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| Full_ci
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| Hartree_fock
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| Mo_basis
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2014-10-29 18:55:31 +01:00
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| Nuclei
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2014-10-26 12:46:17 +01:00
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;;
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let keyword_to_string = function
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2014-10-28 17:16:51 +01:00
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| Ao_basis -> "AO basis"
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2014-10-26 12:46:17 +01:00
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| Bielec_integrals -> "Two electron integrals"
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2014-10-28 17:16:51 +01:00
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| Cisd_sc2 -> "CISD (SC)^2"
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| Determinants -> "Determinants"
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| Electrons -> "Electrons"
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| Full_ci -> "Selected Full-CI"
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| Hartree_fock -> "Hartree-Fock"
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| Mo_basis -> "MO basis"
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2014-10-29 18:55:31 +01:00
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| Nuclei -> "Molecule"
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2014-10-26 12:46:17 +01:00
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;;
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let make_header kw =
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let s = keyword_to_string kw in
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let l = String.length s in
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2014-10-29 00:12:45 +01:00
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"\n\n"^s^"\n"^(String.init l ~f:(fun _ -> '='))^"\n\n"
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2014-10-26 12:46:17 +01:00
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;;
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2014-10-28 17:16:51 +01:00
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let get s =
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2014-11-27 23:05:26 +01:00
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let header = (make_header s) in
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let f (read,to_rst) =
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match read () with
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| Some text -> header ^ (Rst_string.to_string (to_rst text))
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| None -> ""
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in
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let rst =
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try
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begin
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let open Input in
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match s with
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| Full_ci ->
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f Full_ci.(read, to_rst)
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| Hartree_fock ->
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f Hartree_fock.(read, to_rst)
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| Mo_basis ->
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f Mo_basis.(read, to_rst)
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| Electrons ->
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f Electrons.(read, to_rst)
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| Cisd_sc2 ->
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f Cisd_sc2.(read, to_rst)
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| Nuclei ->
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f Nuclei.(read, to_rst)
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| Ao_basis ->
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f Ao_basis.(read, to_rst)
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| Bielec_integrals ->
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f Bielec_integrals.(read, to_rst)
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| Determinants ->
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f Determinants.(read, to_rst)
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end
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with
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| Sys_error msg -> (Printf.eprintf "Info: %s\n%!" msg ; "")
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in
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rst
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2014-10-26 12:46:17 +01:00
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;;
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2014-11-03 19:33:06 +01:00
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let set str s =
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let header = (make_header s) in
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2014-11-27 23:05:26 +01:00
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match String.substr_index ~pos:0 ~pattern:header str with
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| None -> ()
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| Some idx ->
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begin
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let index_begin = idx + (String.length header) in
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let index_end =
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match ( String.substr_index ~pos:(index_begin+(String.length header)+1)
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~pattern:"==" str) with
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| Some i -> i
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| None -> String.length str
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in
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let l = index_end - index_begin in
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let str = String.sub ~pos:index_begin ~len:l str
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|> Rst_string.of_string
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in
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let write (of_rst,w) s =
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try
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match of_rst str with
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| Some data -> w data
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| None -> ()
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with
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| _ -> (Printf.eprintf "Info: Read error in %s\n%!"
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(keyword_to_string s))
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in
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let open Input in
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match s with
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| Hartree_fock -> write Hartree_fock.(of_rst, write) s
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| Full_ci -> write Full_ci.(of_rst, write) s
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| Electrons -> write Electrons.(of_rst, write) s
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| Cisd_sc2 -> write Cisd_sc2.(of_rst, write) s
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| Bielec_integrals -> write Bielec_integrals.(of_rst, write) s
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| Determinants -> write Determinants.(of_rst, write) s
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| Nuclei -> write Nuclei.(of_rst, write) s
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| Ao_basis -> () (* TODO *)
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| Mo_basis -> () (* TODO *)
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end
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2014-11-03 19:33:06 +01:00
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;;
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2014-10-28 17:16:51 +01:00
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let create_temp_file ezfio_filename fields =
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2014-11-03 19:33:06 +01:00
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let temp_filename = Filename.temp_file "qp_edit_" ".rst" in
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2014-11-27 23:05:26 +01:00
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begin
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Out_channel.with_file temp_filename ~f:(fun out_channel ->
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(file_header ezfio_filename) :: (List.map ~f:get fields)
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|> String.concat ~sep:"\n"
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|> Out_channel.output_string out_channel
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)
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end
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; temp_filename
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2014-10-26 12:46:17 +01:00
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;;
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let run ezfio_filename =
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(* Open EZFIO *)
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if (not (Sys.file_exists_exn ezfio_filename)) then
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failwith (ezfio_filename^" does not exists");
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Ezfio.set_file ezfio_filename;
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2014-11-03 19:33:06 +01:00
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(*
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let output = (file_header ezfio_filename) :: (
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2014-10-28 17:16:51 +01:00
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List.map ~f:get [
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Ao_basis ;
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Mo_basis ;
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])
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in
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2014-10-26 12:46:17 +01:00
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String.concat output
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|> print_string
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2014-11-03 19:33:06 +01:00
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*)
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let tasks = [
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Nuclei ;
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2014-11-28 19:50:48 +01:00
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Ao_basis;
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2014-11-04 00:39:10 +01:00
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Electrons ;
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2014-11-03 19:33:06 +01:00
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Bielec_integrals ;
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2014-11-12 10:34:54 +01:00
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Hartree_fock ;
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2014-11-03 22:42:39 +01:00
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Cisd_sc2 ;
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2014-11-12 10:34:54 +01:00
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Full_ci ;
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2014-11-03 23:08:46 +01:00
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Determinants ;
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2014-11-03 19:33:06 +01:00
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]
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in
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(* Create the temp file *)
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let temp_filename = create_temp_file ezfio_filename tasks in
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(* Open the temp file with external editor *)
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let editor =
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match Sys.getenv "EDITOR" with
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| Some editor -> editor
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| None -> "vi"
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in
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let command = Printf.sprintf "%s %s" editor temp_filename in
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Sys.command_exn command;
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(* Re-read the temp file *)
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let temp_string =
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In_channel.with_file temp_filename ~f:(fun in_channel ->
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In_channel.input_all in_channel)
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in
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List.iter ~f:(fun x -> set temp_string x) tasks;
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(* Remove temp_file *)
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Sys.remove temp_filename;
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2014-10-26 12:46:17 +01:00
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;;
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let spec =
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let open Command.Spec in
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empty
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(*
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+> flag "i" (optional string)
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~doc:"Prints input data"
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+> flag "o" (optional string)
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~doc:"Prints output data"
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*)
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+> anon ("ezfio_file" %: string)
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;;
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let command =
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Command.basic
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~summary: "Quantum Package command"
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~readme:(fun () ->
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"
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Edit input data
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")
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spec
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(* (fun i o ezfio_file () -> *)
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(*fun ezfio_file () ->
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try
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run ezfio_file
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with
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| _ msg -> print_string ("\n\nError\n\n"^msg^"\n\n")
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*)
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(fun ezfio_file () -> run ezfio_file)
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;;
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let () =
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Command.run command
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;;
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