2018-01-19 03:14:06 +01:00
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(** Electron-electron repulsion integrals *)
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2018-01-17 19:09:57 +01:00
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open Util
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2018-02-02 01:25:10 +01:00
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open Constants
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2018-03-26 19:15:09 +02:00
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2018-06-29 16:04:40 +02:00
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include FourIdxStorage
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2018-03-26 19:15:09 +02:00
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2018-03-26 16:47:08 +02:00
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2018-03-13 18:24:00 +01:00
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module Am = AngularMomentum
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2018-03-22 00:29:14 +01:00
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module As = AtomicShell
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module Asp = AtomicShellPair
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2018-02-23 15:49:27 +01:00
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module Bs = Basis
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2018-02-23 18:41:30 +01:00
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module Cs = ContractedShell
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2018-02-23 15:49:27 +01:00
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module Csp = ContractedShellPair
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2018-03-27 19:26:32 +02:00
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module Cspc = ContractedShellPairCouple
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2018-03-27 16:32:04 +02:00
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module Fis = FourIdxStorage
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2018-03-27 19:26:32 +02:00
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let cutoff = integrals_cutoff
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2018-02-23 15:49:27 +01:00
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2018-02-24 23:57:38 +01:00
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2018-01-18 23:42:48 +01:00
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(** (00|00)^m : Fundamental electron repulsion integral
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2018-01-19 03:14:06 +01:00
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$ \int \int \phi_p(r1) 1/r_{12} \phi_q(r2) dr_1 dr_2 $
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2018-01-17 19:09:57 +01:00
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2018-01-19 03:14:06 +01:00
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maxm : Maximum total angular momentum
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expo_pq_inv : $1./p + 1./q$ where $p$ and $q$ are the exponents of
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$\phi_p$ and $\phi_q$
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norm_pq_sq : square of the distance between the centers of $\phi_p$
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and $\phi_q$
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2018-01-17 19:09:57 +01:00
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*)
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2018-02-02 21:14:13 +01:00
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2018-01-17 19:09:57 +01:00
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let zero_m ~maxm ~expo_pq_inv ~norm_pq_sq =
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2018-06-27 13:13:59 +02:00
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assert (expo_pq_inv <> 0.);
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let norm_pq_sq =
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if norm_pq_sq > integrals_cutoff then norm_pq_sq else 0.
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in
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2018-01-19 23:31:10 +01:00
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let exp_pq = 1. /. expo_pq_inv in
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let t = norm_pq_sq *. exp_pq in
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2018-02-09 02:01:26 +01:00
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let f = two_over_sq_pi *. (sqrt exp_pq) in
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let result = boys_function ~maxm t in
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let rec aux accu k = function
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| 0 -> result.(k) <- result.(k) *. accu
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| l ->
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begin
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result.(k) <- result.(k) *. accu;
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let new_accu = -. accu *. exp_pq in
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aux new_accu (k+1) (l-1)
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end
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in
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aux f 0 maxm;
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result
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2018-01-17 19:09:57 +01:00
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2018-01-23 19:26:28 +01:00
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2018-01-31 14:37:51 +01:00
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2018-01-19 03:14:06 +01:00
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2018-03-27 19:26:32 +02:00
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let class_of_contracted_shell_pair_couple shell_pair_couple =
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let shell_p = Cspc.shell_pair_p shell_pair_couple
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and shell_q = Cspc.shell_pair_q shell_pair_couple
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in
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2018-03-27 16:31:44 +02:00
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if Array.length (Csp.shell_pairs shell_p) + (Array.length (Csp.shell_pairs shell_q)) < 4 then
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2018-03-27 19:26:32 +02:00
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TwoElectronRR.contracted_class_shell_pair_couple ~zero_m shell_pair_couple
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2018-03-27 16:31:44 +02:00
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else
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TwoElectronRRVectorized.contracted_class_shell_pairs ~zero_m shell_p shell_q
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2018-03-22 00:29:14 +01:00
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2018-03-27 16:31:44 +02:00
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let filter_contracted_shell_pairs ?(cutoff=integrals_cutoff) shell_pairs =
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2018-03-27 19:26:32 +02:00
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List.map (fun pair ->
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match Cspc.make ~cutoff pair pair with
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| Some cspc ->
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let cls = class_of_contracted_shell_pair_couple cspc in
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(pair, Zmap.fold (fun key value accu -> max (abs_float value) accu) cls 0. )
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2018-05-28 19:58:40 +02:00
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(* TODO \sum_k |coef_k * integral_k| *)
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2018-03-27 19:32:37 +02:00
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| None -> (pair, -1.)
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2018-03-27 19:26:32 +02:00
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) shell_pairs
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|> List.filter (fun (_, schwartz_p_max) -> schwartz_p_max >= cutoff)
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|> List.map fst
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(* TODO
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let filter_contracted_shell_pair_couples ?(cutoff=integrals_cutoff) shell_pair_couples =
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2018-03-27 16:32:04 +02:00
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List.map (fun pair ->
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let cls =
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class_of_contracted_shell_pairs pair pair
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in
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(pair, Zmap.fold (fun key value accu -> max (abs_float value) accu) cls 0. )
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) shell_pairs
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|> List.filter (fun (_, schwartz_p_max) -> schwartz_p_max >= cutoff)
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|> List.map fst
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2018-03-27 19:26:32 +02:00
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*)
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2018-03-27 16:31:44 +02:00
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2018-06-01 14:42:47 +02:00
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let store_class ?(cutoff=integrals_cutoff) data contracted_shell_pair_couple cls =
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2018-03-27 16:32:04 +02:00
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let to_powers x =
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2018-03-27 16:31:44 +02:00
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let open Zkey in
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match to_powers x with
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| Three x -> x
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| _ -> assert false
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2018-03-27 16:32:04 +02:00
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in
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2018-03-27 19:26:32 +02:00
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let shell_p = Cspc.shell_pair_p contracted_shell_pair_couple
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and shell_q = Cspc.shell_pair_q contracted_shell_pair_couple
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in
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2018-03-27 16:32:04 +02:00
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Array.iteri (fun i_c powers_i ->
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let i_c = Cs.index (Csp.shell_a shell_p) + i_c + 1 in
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let xi = to_powers powers_i in
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Array.iteri (fun j_c powers_j ->
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let j_c = Cs.index (Csp.shell_b shell_p) + j_c + 1 in
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let xj = to_powers powers_j in
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Array.iteri (fun k_c powers_k ->
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let k_c = Cs.index (Csp.shell_a shell_q) + k_c + 1 in
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let xk = to_powers powers_k in
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Array.iteri (fun l_c powers_l ->
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let l_c = Cs.index (Csp.shell_b shell_q) + l_c + 1 in
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let xl = to_powers powers_l in
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let key = Zkey.of_powers_twelve xi xj xk xl in
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let value = Zmap.find cls key in
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2018-06-27 13:13:59 +02:00
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set_chem data i_c j_c k_c l_c value
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2018-03-27 16:32:04 +02:00
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) (Cs.zkey_array (Csp.shell_b shell_q))
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) (Cs.zkey_array (Csp.shell_a shell_q))
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) (Cs.zkey_array (Csp.shell_b shell_p))
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2018-06-01 14:42:47 +02:00
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) (Cs.zkey_array (Csp.shell_a shell_p))
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2018-03-27 16:31:44 +02:00
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2018-02-02 10:10:05 +01:00
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2018-06-27 13:13:59 +02:00
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let of_basis basis =
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2018-06-01 14:42:47 +02:00
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let n = Bs.size basis
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and shell = Bs.contracted_shells basis
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in
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let eri_array =
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Fis.create ~size:n `Dense
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(*
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Fis.create ~size:n `Sparse
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*)
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in
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let t0 = Unix.gettimeofday () in
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let shell_pairs =
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Csp.of_contracted_shell_array shell
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|> filter_contracted_shell_pairs ~cutoff
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in
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Printf.printf "%d significant shell pairs computed in %f seconds\n"
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(List.length shell_pairs) (Unix.gettimeofday () -. t0);
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let t0 = Unix.gettimeofday () in
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let ishell = ref 0 in
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List.iter (fun shell_p ->
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let () =
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if (Cs.index (Csp.shell_a shell_p) > !ishell) then
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(ishell := Cs.index (Csp.shell_a shell_p) ; print_int !ishell ; print_newline ())
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in
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let sp =
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Csp.shell_pairs shell_p
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in
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try
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List.iter (fun shell_q ->
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let () =
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if Cs.index (Csp.shell_a shell_q) >
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Cs.index (Csp.shell_a shell_p) then
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raise Exit
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in
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let sq = Csp.shell_pairs shell_q in
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let cspc =
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if Array.length sp < Array.length sq then
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Cspc.make ~cutoff shell_p shell_q
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else
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Cspc.make ~cutoff shell_q shell_p
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in
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match cspc with
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2018-06-27 13:13:59 +02:00
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| Some cspc ->
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let cls =
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class_of_contracted_shell_pair_couple cspc
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in
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store_class ~cutoff eri_array cspc cls
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2018-06-01 14:42:47 +02:00
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| None -> ()
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) shell_pairs
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with Exit -> ()
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) shell_pairs ;
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Printf.printf "Computed ERIs in %f seconds\n%!" (Unix.gettimeofday () -. t0);
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eri_array
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2018-06-27 13:13:59 +02:00
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(*
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2018-06-01 14:42:47 +02:00
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let of_basis_parallel basis =
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let store_class ?(cutoff=integrals_cutoff) push_socket contracted_shell_pair_couple cls =
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let to_powers x =
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let open Zkey in
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match to_powers x with
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| Three x -> x
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| _ -> assert false
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in
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let shell_p = Cspc.shell_pair_p contracted_shell_pair_couple
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and shell_q = Cspc.shell_pair_q contracted_shell_pair_couple
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in
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let msg = ref [] in
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Array.iteri (fun i_c powers_i ->
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let i_c = Cs.index (Csp.shell_a shell_p) + i_c + 1 in
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let xi = to_powers powers_i in
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Array.iteri (fun j_c powers_j ->
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let j_c = Cs.index (Csp.shell_b shell_p) + j_c + 1 in
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let xj = to_powers powers_j in
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Array.iteri (fun k_c powers_k ->
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let k_c = Cs.index (Csp.shell_a shell_q) + k_c + 1 in
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let xk = to_powers powers_k in
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Array.iteri (fun l_c powers_l ->
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let l_c = Cs.index (Csp.shell_b shell_q) + l_c + 1 in
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let xl = to_powers powers_l in
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let key = Zkey.of_powers_twelve xi xj xk xl in
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let value = Zmap.find cls key in
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msg := (i_c,j_c,k_c,l_c,value) :: !msg;
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) (Cs.zkey_array (Csp.shell_b shell_q))
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) (Cs.zkey_array (Csp.shell_a shell_q))
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) (Cs.zkey_array (Csp.shell_b shell_p))
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) (Cs.zkey_array (Csp.shell_a shell_p));
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Zmq.Socket.send_all push_socket ["0" ; Bytes.to_string (Marshal.to_bytes !msg []) ]
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in
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2018-01-19 23:31:10 +01:00
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2018-03-20 14:11:31 +01:00
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let n = Bs.size basis
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and shell = Bs.contracted_shells basis
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2018-02-09 00:37:25 +01:00
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in
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2018-01-23 19:26:28 +01:00
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2018-03-27 16:32:04 +02:00
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let eri_array =
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Fis.create ~size:n `Dense
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(*
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Fis.create ~size:n `Sparse
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*)
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in
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let t0 = Unix.gettimeofday () in
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2018-02-07 17:07:05 +01:00
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2018-01-23 19:26:28 +01:00
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let shell_pairs =
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2018-03-20 14:11:31 +01:00
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Csp.of_contracted_shell_array shell
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2018-03-27 19:26:32 +02:00
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|> filter_contracted_shell_pairs ~cutoff
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2018-02-07 17:07:05 +01:00
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in
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2018-01-23 19:26:28 +01:00
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2018-06-27 13:13:59 +02:00
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Printf.printf "%d significant shell pairs computed in %f seconds\n%!"
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2018-03-27 16:32:04 +02:00
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(List.length shell_pairs) (Unix.gettimeofday () -. t0);
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2018-02-02 10:10:05 +01:00
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2018-01-30 22:36:17 +01:00
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2018-02-09 00:37:25 +01:00
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let t0 = Unix.gettimeofday () in
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2018-03-22 00:29:14 +01:00
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let ishell = ref 0 in
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2018-03-27 16:32:04 +02:00
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2018-03-22 00:29:14 +01:00
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2018-02-01 17:13:47 +01:00
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2018-06-27 13:13:59 +02:00
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let zmq_port = 12345 in
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begin
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match Unix.fork () with
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| 0 -> Printf.printf "pouet\n%!"
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| pid -> Printf.printf "coucou\n%!"
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end;
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begin
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2018-06-01 14:34:28 +02:00
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match Unix.fork () with
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| 0 -> begin
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2018-06-27 13:13:59 +02:00
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let zmq_addr = Printf.sprintf "tcp://localhost:%d" zmq_port in
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2018-06-01 14:34:28 +02:00
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let zmq = ref None in
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2018-06-27 13:13:59 +02:00
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Printf.printf "PID %d OK\n%!" 0;
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2018-06-01 14:34:28 +02:00
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2018-06-01 14:42:47 +02:00
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Parmap.pariter ~chunksize:1
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2018-06-27 13:13:59 +02:00
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~init:(fun rank ->
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2018-06-01 14:34:28 +02:00
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let zmq_context =
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Zmq.Context.create ()
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in
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let push_socket =
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Zmq.Socket.create zmq_context Zmq.Socket.push
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in
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2018-06-27 13:13:59 +02:00
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Printf.printf "Init %d OK\n%!" rank;
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2018-06-01 14:34:28 +02:00
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Zmq.Socket.connect push_socket zmq_addr;
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zmq := Some (zmq_context, push_socket)
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)
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(fun shell_p ->
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let push_socket =
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match !zmq with
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| Some (_, push_socket) -> push_socket
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| None -> failwith "ZMQ"
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in
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let () =
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if (Cs.index (Csp.shell_a shell_p) > !ishell) then
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(ishell := Cs.index (Csp.shell_a shell_p) ; print_int !ishell ; print_newline ())
|
|
|
|
in
|
|
|
|
|
|
|
|
let sp =
|
|
|
|
Csp.shell_pairs shell_p
|
|
|
|
in
|
|
|
|
|
|
|
|
try
|
|
|
|
List.iter (fun shell_q ->
|
|
|
|
let () =
|
|
|
|
if Cs.index (Csp.shell_a shell_q) >
|
|
|
|
Cs.index (Csp.shell_a shell_p) then
|
|
|
|
raise Exit
|
|
|
|
in
|
|
|
|
let sq = Csp.shell_pairs shell_q in
|
|
|
|
let cspc =
|
|
|
|
if Array.length sp < Array.length sq then
|
|
|
|
Cspc.make ~cutoff shell_p shell_q
|
|
|
|
else
|
|
|
|
Cspc.make ~cutoff shell_q shell_p
|
|
|
|
in
|
|
|
|
|
|
|
|
match cspc with
|
|
|
|
| Some cspc -> let cls = class_of_contracted_shell_pair_couple cspc in
|
|
|
|
store_class ~cutoff push_socket cspc cls
|
|
|
|
| None -> ()
|
|
|
|
) shell_pairs
|
|
|
|
with Exit -> ()
|
|
|
|
) (Parmap.L shell_pairs)
|
|
|
|
~finalize:(fun _ ->
|
|
|
|
let zmq_context, push_socket =
|
|
|
|
match !zmq with
|
|
|
|
| Some (zmq_context, push_socket) -> zmq_context, push_socket
|
|
|
|
| None -> failwith "ZMQ"
|
|
|
|
in
|
|
|
|
Zmq.Socket.close push_socket;
|
|
|
|
Zmq.Context.terminate zmq_context
|
|
|
|
);
|
|
|
|
let zmq_context =
|
|
|
|
Zmq.Context.create ()
|
|
|
|
in
|
|
|
|
let push_socket = Zmq.Socket.create zmq_context Zmq.Socket.push in
|
|
|
|
Zmq.Socket.connect push_socket zmq_addr;
|
|
|
|
Zmq.Socket.send_all push_socket [ "1" ; ""];
|
|
|
|
Zmq.Socket.close push_socket;
|
|
|
|
Zmq.Context.terminate zmq_context;
|
|
|
|
ignore @@ exit 0
|
|
|
|
end
|
|
|
|
|
|
|
|
| pid -> begin
|
2018-06-27 13:13:59 +02:00
|
|
|
Printf.printf "PID %d OK\n%!" pid;
|
|
|
|
let zmq_addr = Printf.sprintf "tcp://*:%d" zmq_port in
|
2018-06-01 14:34:28 +02:00
|
|
|
let zmq_context =
|
|
|
|
Zmq.Context.create ()
|
|
|
|
in
|
|
|
|
let pull_socket =
|
|
|
|
Zmq.Socket.create zmq_context Zmq.Socket.pull
|
|
|
|
in
|
|
|
|
Zmq.Socket.bind pull_socket zmq_addr;
|
|
|
|
|
|
|
|
try
|
|
|
|
while true do
|
|
|
|
match Zmq.Socket.recv_all pull_socket with
|
|
|
|
| "0" :: rest :: [] ->
|
|
|
|
List.iter (fun (i,j,k,l,value) ->
|
|
|
|
set_chem eri_array i j k l value) (Marshal.from_bytes (Bytes.of_string rest) 0)
|
|
|
|
| "1" :: _ -> raise Exit
|
|
|
|
| _ -> invalid_arg "ERI"
|
|
|
|
done
|
|
|
|
with Exit -> ();
|
|
|
|
|
|
|
|
Zmq.Socket.close pull_socket;
|
|
|
|
Zmq.Context.terminate zmq_context;
|
|
|
|
ignore (Unix.wait ())
|
|
|
|
end
|
2018-06-27 13:13:59 +02:00
|
|
|
end;
|
2018-02-11 00:05:56 +01:00
|
|
|
Printf.printf "Computed ERIs in %f seconds\n%!" (Unix.gettimeofday () -. t0);
|
2018-02-09 00:37:25 +01:00
|
|
|
eri_array
|
2018-06-27 13:13:59 +02:00
|
|
|
*)
|
2018-02-02 10:10:05 +01:00
|
|
|
|