From 59ee1f970977f28642883d735eb0f2649145619f Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Micka=C3=ABl=20V=C3=A9ril?= <mveril@irsamc.ups-tlse.fr>
Date: Sat, 5 Dec 2020 15:31:23 +0100
Subject: [PATCH] Localize pyrimidine

---
 pyrimidine/cc-pvdz/localize.sh    | 27 +++++++++++++++++++++++++++
 pyrimidine/cc-pvdz/pyrimidine.ang | 12 ++++++++++++
 pyrimidine/cc-pvdz/run_loc.sh     | 17 +++++++++++++++++
 3 files changed, 56 insertions(+)
 create mode 100755 pyrimidine/cc-pvdz/localize.sh
 create mode 100644 pyrimidine/cc-pvdz/pyrimidine.ang
 create mode 100755 pyrimidine/cc-pvdz/run_loc.sh

diff --git a/pyrimidine/cc-pvdz/localize.sh b/pyrimidine/cc-pvdz/localize.sh
new file mode 100755
index 0000000..ea1ff3f
--- /dev/null
+++ b/pyrimidine/cc-pvdz/localize.sh
@@ -0,0 +1,27 @@
+#!/bin/bash
+
+# localize.sh xyz basis ezfio charge multiplicity
+
+XYZ=$1
+BASIS=$2
+EZFIO=${3%/}
+CHARGE=${4:-0}
+MULT=${5:-1}
+
+./localize \
+	-b $BASIS \
+	-x $XYZ \
+	-i $EZFIO \
+	-c $CHARGE \
+	-m $MULT \
+	-o ${EZFIO}.mo \
+	-s "sp" 
+
+cp -r ${EZFIO} ${EZFIO}.localized
+
+source ~/tmpdir/qp2/quantum_package.rc 
+
+qp set_file ${EZFIO}.localized
+cat ${EZFIO}.mo | qp set mo_basis mo_coef
+
+
diff --git a/pyrimidine/cc-pvdz/pyrimidine.ang b/pyrimidine/cc-pvdz/pyrimidine.ang
new file mode 100644
index 0000000..6cfe5e1
--- /dev/null
+++ b/pyrimidine/cc-pvdz/pyrimidine.ang
@@ -0,0 +1,12 @@
+  10
+  
+  C      0.00000000       0.00000000       1.27806007
+  C      0.00000000      -0.00000000      -1.37803506
+  C      0.00000000       1.18150751      -0.65019687
+  C      0.00000000      -1.18150751      -0.65019687
+  N      0.00000000       1.19707397       0.68591814
+  N      0.00000000      -1.19707397       0.68591814
+  H      0.00000000       0.00000000       2.35896753
+  H      0.00000000       0.00000000      -2.45602226
+  H      0.00000000       2.14395798      -1.14488415
+  H      0.00000000      -2.14395798      -1.14488415
diff --git a/pyrimidine/cc-pvdz/run_loc.sh b/pyrimidine/cc-pvdz/run_loc.sh
new file mode 100755
index 0000000..f9b4918
--- /dev/null
+++ b/pyrimidine/cc-pvdz/run_loc.sh
@@ -0,0 +1,17 @@
+#!/bin/bash -x
+#SBATCH -N 1  # 1 noeud
+#SBATCH -n 1  # 1 processus
+#SBATCH -c 36  # 36 coeurs
+
+INPUT=$1
+source ~/tmpdir/qp2/quantum_package.rc 
+
+set -e 
+
+./localize.sh ${INPUT}.ang ${QP_ROOT}/data/basis/cc-pvdz ${INPUT}
+qp set_file ${INPUT}.localized
+qp set determinants n_states 1 
+qp set determinants read_wf False
+qp set determinants s2_eig False
+qp set determinants n_det_max 1e8
+qp run fci > ${INPUT}.localized.nofci.out