Paper_Uracil_collision/biblio.bib

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@article{Rasmussen2010,
  title={Hydration of the Lowest Triplet States of the DNA/RNA Pyrimidines},
  author={Rasmussen, Andrew M and Lind, Maria C and Kim, Sunghwan and Schaefer III, Henry F},
  journal={Journal of chemical theory and computation},
  volume={6},
  number={3},
  pages={930--939},
  year={2010},
  publisher={ACS Publications}
}

@article{Coates2018,
  title={Binding energies of hydrated cobalt (II) by collision-induced dissociation and theoretical studies: evidence for a new critical size},
  author={Coates, Rebecca A and Armentrout, PB},
  journal={Physical Chemistry Chemical Physics},
  volume={20},
  number={2},
  pages={802--818},
  year={2018},
  publisher={Royal Society of Chemistry}
}

@article{Imhoff2007,
  title={Ionizing fragmentation of uracil and 5-bromouracil by electron impact in gas phase and hyperthermal Ar+ ion irradiation in condensed phase},
  author={Imhoff, Marjorie and Deng, Zongwu and Huels, Michael A},
  journal={International Journal of Mass Spectrometry},
  volume={262},
  number={1-2},
  pages={154--160},
  year={2007},
  publisher={Elsevier}
}

@article{Abdoul2000,
  title={Dissociative electron attachment to gas-phase 5-bromouracil},
  author={Abdoul-Carime, H and Huels, MA and Br{\"u}ning, F and Illenberger, E and Sanche, L},
  journal={The journal of chemical physics},
  volume={113},
  number={7},
  pages={2517--2521},
  year={2000},
  publisher={AIP}
}

@article{Champeaux2010,
  title={Dehalogenation of 5-halo-uracil molecules induced by 100 keV proton collisions},
  author={Champeaux, Jean-Philippe and {\c{C}}ar{\c{c}}abal, Pierre and Rabier, Julien and Cafarelli, Pierre and Sence, Martine and Moretto-Capelle, Patrick},
  journal={Physical Chemistry Chemical Physics},
  volume={12},
  number={20},
  pages={5454--5461},
  year={2010},
  publisher={Royal Society of Chemistry}
}

@article{Korchagina2017,
  title={Molecular dynamics study of the collision-induced reaction of h with co on small water clusters},
  author={Korchagina, Kseniia A and Spiegelman, Fernand and Cuny, Jerome},
  journal={The Journal of Physical Chemistry A},
  volume={121},
  number={49},
  pages={9485--9494},
  year={2017},
  publisher={ACS Publications}
}



@article{Delaunay2014,
  title={Prompt and delayed fragmentation of bromouracil cations ionized by multiply charged ions},
  author={Delaunay, Rudy and Champeaux, Jean-Philippe and Maclot, Sylvain and Capron, Michael and Domaracka, Alicja and M{\'e}ry, Alain and Manil, Bruno and Adoui, Lamri and Rousseau, Patrick and Moretto-Capelle, Patrick and others},
  journal={The European Physical Journal D},
  volume={68},
  number={6},
  pages={162},
  year={2014},
  publisher={Springer}
}

@article{Bacchus2009,
  title={Ab initio molecular treatment of charge-transfer processes induced by collision of carbon ions with 5-halouracil molecules},
  author={Bacchus-Montabonel, MC and Tergiman, YS and Talbi, Dahbia},
  journal={Physical Review A},
  volume={79},
  number={1},
  pages={012710},
  year={2009},
  publisher={APS}
}

@article{Kossoski2015,
  title={Negative ion states of 5-bromouracil and 5-iodouracil},
  author={Kossoski, Fabris and Varella, MT do N},
  journal={Physical Chemistry Chemical Physics},
  volume={17},
  number={26},
  pages={17271--17278},
  year={2015},
  publisher={Royal Society of Chemistry}
}

@article{Maclot2011,
  title={Ion-Induced Fragmentation of Amino Acids: Effect of the Environment},
  author={Maclot, Sylvain and Capron, Michael and Maisonny, R{\'e}mi and {\L}awicki, Arkadiusz and M{\'e}ry, Alain and Rangama, Jimmy and Chesnel, Jean-Yves and Bari, Sadia and Hoekstra, Ronnie and Schlath{\"o}lter, Thomas and others},
  journal={ChemPhysChem},
  volume={12},
  number={5},
  pages={930--936},
  year={2011},
  publisher={Wiley Online Library}
}

@inproceedings{Domaracka2012,
  title={Ion interaction with biomolecular systems and the effect of the environment},
  author={Domaracka, Alicja and Capron, Michael and Maclot, Sylvain and Chesnel, Jean-Yves and M{\'e}ry, Alain and Poully, Jean-Christophe and Rangama, Jimmy and Adoui, Lamri and Rousseau, Patrick and Huber, Bernd A},
  booktitle={Journal of Physics: Conference Series},
  volume={373},
  number={1},
  pages={012005},
  year={2012},
  organization={IOP Publishing}
}

@article{Markush2016,
  title={The role of the environment in the ion induced fragmentation of uracil},
  author={Markush, Pal and Bolognesi, Paola and Cartoni, Antonella and Rousseau, Patrick and Maclot, Sylvain and Delaunay, Rudy and Domaracka, Alicja and Kocisek, Jaroslav and Castrovilli, Mattea C and Huber, Bernd A and others},
  journal={Physical Chemistry Chemical Physics},
  volume={18},
  number={25},
  pages={16721--16729},
  year={2016},
  publisher={Royal Society of Chemistry}
}

@article{Castrovilli2017,
  title={Fragmentation of pure and hydrated clusters of 5Br-uracil by low energy carbon ions: observation of hydrated fragments},
  author={Castrovilli, MC and Markush, P and Bolognesi, P and Rousseau, P and Maclot, S and Cartoni, A and Delaunay, R and Domaracka, A and Ko{\v{c}}i{\v{s}}ek, J and Huber, BA and others},
  journal={Physical Chemistry Chemical Physics},
  volume={19},
  number={30},
  pages={19807--19814},
  year={2017},
  publisher={Royal Society of Chemistry}
}

@incollection{Hayes1990,
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@article{Coates2017,
  title={Thermochemical Investigations of Hydrated Nickel Dication Complexes by Threshold Collision-Induced Dissociation and Theory},
  author={Coates, Rebecca A and Armentrout, PB},
  journal={The Journal of Physical Chemistry A},
  volume={121},
  number={19},
  pages={3629--3646},
  year={2017},
  publisher={ACS Publications}
}

@article{Neustetter2017,
  title={Study of Electron Ionization and Fragmentation of Non-hydrated and Hydrated Tetrahydrofuran Clusters},
  author={Neustetter, Michael and Mahmoodi-Darian, Masoomeh and Denifl, Stephan},
  journal={Journal of The American Society for Mass Spectrometry},
  volume={28},
  number={5},
  pages={866--872},
  year={2017},
  publisher={Springer}
}

@article{Nelson1994,
  title={Collision-induced dissociation of uracil and its derivatives},
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@article{Molina2015,
  title={Elucidating collision induced dissociation products and reaction mechanisms of protonated uracil by coupling chemical dynamics simulations with tandem mass spectrometry experiments},
  author={Molina, Estefan{\'\i}a Rossich and Ortiz, Daniel and Salpin, Jean-Yves and Spezia, Riccardo},
  journal={Journal of mass spectrometry},
  volume={50},
  number={12},
  pages={1340--1351},
  year={2015},
  publisher={Wiley Online Library}
}

@article{Molina2016,
  title={On the gas phase fragmentation of protonated uracil: a statistical perspective},
  author={Molina, Estefan{\'\i}a Rossich and Salpin, Jean-Yves and Spezia, Riccardo and Martinez-Nunez, Emilio},
  journal={Physical Chemistry Chemical Physics},
  volume={18},
  number={22},
  pages={14980--14990},
  year={2016},
  publisher={Royal Society of Chemistry}
}

@article{Sadr2014,
  title={Theoretical and experimental study of the fragmentation of protonated uracil},
  author={Sadr-Arani, Leila and Mignon, Pierre and Chermette, Henry and Douki, Thierry},
  journal={Chemical Physics Letters},
  volume={605},
  pages={108--114},
  year={2014},
  publisher={Elsevier}
}

@article{Bakker2008,
  title={Tautomerism of uracil probed via infrared spectroscopy of singly hydrated protonated uracil},
  author={Bakker, Joost M and Sinha, Rajeev K and Besson, Thierry and Brugnara, Maurizio and Tosi, Paolo and Salpin, Jean-Yves and Ma{\^\i}tre, Philippe},
  journal={The Journal of Physical Chemistry A},
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  publisher={ACS Publications}
}

@article{Simon2017,
  title={Dissociation of polycyclic aromatic hydrocarbons: molecular dynamics studies},
  author={Simon, Aude and Rapacioli, Mathias and Rouaut, Guillaume and Trinquier, Georges and Gad{\'e}a, FX},
  journal={Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences},
  volume={375},
  number={2092},
  pages={20160195},
  year={2017},
  publisher={The Royal Society Publishing}
}


@article{Rapacioli2018,
Author = {Rapacioli, Mathias and Cazaux, Stephanie and Foley, Nolan and Simon,
   Aude and Hoekstra, Ronnie and Schlatholter, Thomas},
Title = {{Atomic hydrogen interactions with gas-phase coronene cations:
   hydrogenation versus fragmentation}},
Journal = {{PHYSICAL CHEMISTRY CHEMICAL PHYSICS}},
Year = {{2018}},
Volume = {{20}},
Number = {{35}},
Pages = {{22427-22438}},
Month = {{SEP 21}},
DOI = {{10.1039/c8cp03024c}
}


@article{Tomsic2013,
author = {Tomsic, Anna and Andersson, Patrik U. and Marković, Nikola and Pettersson,Jan B. C.},
title = {Collision dynamics of large water clusters on graphite},
journal = {The Journal of Chemical Physics},
volume = {119},
number = {9},
pages = {4916-4922},
year = {2003},
doi = {10.1063/1.1594717},
URL = {https://doi.org/10.1063/1.1594717}
}


@article{Elstner2014,
  title={Density functional tight binding},
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}

@article{Kruger2005,
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  year={2005},
  publisher={AIP}
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@article{Elstner1998,
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@article{Rapacioli2009,
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@article{Simon2012,
  title={Vibrational spectroscopy and molecular dynamics of water monomers and dimers adsorbed on polycyclic aromatic hydrocarbons},
  author={Simon, Aude and Rapacioli, Mathias and Mascetti, Jo{\"e}lle and Spiegelman, Fernand},
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@article{Simon2013,
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  publisher={Elsevier}
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@article{demonnanoCode,
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@article{Braud2019,
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@article{Pedersen2014,
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