Paper_Uracil_collision/biblio.bib

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@article{Rasmussen2010,
title={Hydration of the Lowest Triplet States of the DNA/RNA Pyrimidines},
author={Rasmussen, Andrew M and Lind, Maria C and Kim, Sunghwan and Schaefer III, Henry F},
journal={Journal of chemical theory and computation},
volume={6},
number={3},
pages={930--939},
year={2010},
publisher={ACS Publications}
}
@article{Coates2018,
title={Binding energies of hydrated cobalt (II) by collision-induced dissociation and theoretical studies: evidence for a new critical size},
author={Coates, Rebecca A and Armentrout, PB},
journal={Physical Chemistry Chemical Physics},
volume={20},
number={2},
pages={802--818},
year={2018},
publisher={Royal Society of Chemistry}
}
@article{Imhoff2007,
title={Ionizing fragmentation of uracil and 5-bromouracil by electron impact in gas phase and hyperthermal Ar+ ion irradiation in condensed phase},
author={Imhoff, Marjorie and Deng, Zongwu and Huels, Michael A},
journal={International Journal of Mass Spectrometry},
volume={262},
number={1-2},
pages={154--160},
year={2007},
publisher={Elsevier}
}
@article{Abdoul2000,
title={Dissociative electron attachment to gas-phase 5-bromouracil},
author={Abdoul-Carime, H and Huels, MA and Br{\"u}ning, F and Illenberger, E and Sanche, L},
journal={The journal of chemical physics},
volume={113},
number={7},
pages={2517--2521},
year={2000},
publisher={AIP}
}
@article{Champeaux2010,
title={Dehalogenation of 5-halo-uracil molecules induced by 100 keV proton collisions},
author={Champeaux, Jean-Philippe and {\c{C}}ar{\c{c}}abal, Pierre and Rabier, Julien and Cafarelli, Pierre and Sence, Martine and Moretto-Capelle, Patrick},
journal={Physical Chemistry Chemical Physics},
volume={12},
number={20},
pages={5454--5461},
year={2010},
publisher={Royal Society of Chemistry}
}
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@article{Korchagina2017,
title={Molecular dynamics study of the collision-induced reaction of h with co on small water clusters},
author={Korchagina, Kseniia A and Spiegelman, Fernand and Cuny, Jerome},
journal={The Journal of Physical Chemistry A},
volume={121},
number={49},
pages={9485--9494},
year={2017},
publisher={ACS Publications}
}
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@article{Delaunay2014,
title={Prompt and delayed fragmentation of bromouracil cations ionized by multiply charged ions},
author={Delaunay, Rudy and Champeaux, Jean-Philippe and Maclot, Sylvain and Capron, Michael and Domaracka, Alicja and M{\'e}ry, Alain and Manil, Bruno and Adoui, Lamri and Rousseau, Patrick and Moretto-Capelle, Patrick and others},
journal={The European Physical Journal D},
volume={68},
number={6},
pages={162},
year={2014},
publisher={Springer}
}
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@article{Bacchus2009,
title={Ab initio molecular treatment of charge-transfer processes induced by collision of carbon ions with 5-halouracil molecules},
author={Bacchus-Montabonel, MC and Tergiman, YS and Talbi, Dahbia},
journal={Physical Review A},
volume={79},
number={1},
pages={012710},
year={2009},
publisher={APS}
}
@article{Kossoski2015,
title={Negative ion states of 5-bromouracil and 5-iodouracil},
author={Kossoski, Fabris and Varella, MT do N},
journal={Physical Chemistry Chemical Physics},
volume={17},
number={26},
pages={17271--17278},
year={2015},
publisher={Royal Society of Chemistry}
}
@article{Maclot2011,
title={Ion-Induced Fragmentation of Amino Acids: Effect of the Environment},
author={Maclot, Sylvain and Capron, Michael and Maisonny, R{\'e}mi and {\L}awicki, Arkadiusz and M{\'e}ry, Alain and Rangama, Jimmy and Chesnel, Jean-Yves and Bari, Sadia and Hoekstra, Ronnie and Schlath{\"o}lter, Thomas and others},
journal={ChemPhysChem},
volume={12},
number={5},
pages={930--936},
year={2011},
publisher={Wiley Online Library}
}
@inproceedings{Domaracka2012,
title={Ion interaction with biomolecular systems and the effect of the environment},
author={Domaracka, Alicja and Capron, Michael and Maclot, Sylvain and Chesnel, Jean-Yves and M{\'e}ry, Alain and Poully, Jean-Christophe and Rangama, Jimmy and Adoui, Lamri and Rousseau, Patrick and Huber, Bernd A},
booktitle={Journal of Physics: Conference Series},
volume={373},
number={1},
pages={012005},
year={2012},
organization={IOP Publishing}
}
@article{Markush2016,
title={The role of the environment in the ion induced fragmentation of uracil},
author={Markush, Pal and Bolognesi, Paola and Cartoni, Antonella and Rousseau, Patrick and Maclot, Sylvain and Delaunay, Rudy and Domaracka, Alicja and Kocisek, Jaroslav and Castrovilli, Mattea C and Huber, Bernd A and others},
journal={Physical Chemistry Chemical Physics},
volume={18},
number={25},
pages={16721--16729},
year={2016},
publisher={Royal Society of Chemistry}
}
@article{Castrovilli2017,
title={Fragmentation of pure and hydrated clusters of 5Br-uracil by low energy carbon ions: observation of hydrated fragments},
author={Castrovilli, MC and Markush, P and Bolognesi, P and Rousseau, P and Maclot, S and Cartoni, A and Delaunay, R and Domaracka, A and Ko{\v{c}}i{\v{s}}ek, J and Huber, BA and others},
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volume={19},
number={30},
pages={19807--19814},
year={2017},
publisher={Royal Society of Chemistry}
}
@incollection{Hayes1990,
title={[10] Collision-induced dissociation},
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@article{Coates2017,
title={Thermochemical Investigations of Hydrated Nickel Dication Complexes by Threshold Collision-Induced Dissociation and Theory},
author={Coates, Rebecca A and Armentrout, PB},
journal={The Journal of Physical Chemistry A},
volume={121},
number={19},
pages={3629--3646},
year={2017},
publisher={ACS Publications}
}
@article{Neustetter2017,
title={Study of Electron Ionization and Fragmentation of Non-hydrated and Hydrated Tetrahydrofuran Clusters},
author={Neustetter, Michael and Mahmoodi-Darian, Masoomeh and Denifl, Stephan},
journal={Journal of The American Society for Mass Spectrometry},
volume={28},
number={5},
pages={866--872},
year={2017},
publisher={Springer}
}
@article{Nelson1994,
title={Collision-induced dissociation of uracil and its derivatives},
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@article{Molina2015,
title={Elucidating collision induced dissociation products and reaction mechanisms of protonated uracil by coupling chemical dynamics simulations with tandem mass spectrometry experiments},
author={Molina, Estefan{\'\i}a Rossich and Ortiz, Daniel and Salpin, Jean-Yves and Spezia, Riccardo},
journal={Journal of mass spectrometry},
volume={50},
number={12},
pages={1340--1351},
year={2015},
publisher={Wiley Online Library}
}
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@article{Molina2016,
title={On the gas phase fragmentation of protonated uracil: a statistical perspective},
author={Molina, Estefan{\'\i}a Rossich and Salpin, Jean-Yves and Spezia, Riccardo and Martinez-Nunez, Emilio},
journal={Physical Chemistry Chemical Physics},
volume={18},
number={22},
pages={14980--14990},
year={2016},
publisher={Royal Society of Chemistry}
}
@article{Sadr2014,
title={Theoretical and experimental study of the fragmentation of protonated uracil},
author={Sadr-Arani, Leila and Mignon, Pierre and Chermette, Henry and Douki, Thierry},
journal={Chemical Physics Letters},
volume={605},
pages={108--114},
year={2014},
publisher={Elsevier}
}
@article{Bakker2008,
title={Tautomerism of uracil probed via infrared spectroscopy of singly hydrated protonated uracil},
author={Bakker, Joost M and Sinha, Rajeev K and Besson, Thierry and Brugnara, Maurizio and Tosi, Paolo and Salpin, Jean-Yves and Ma{\^\i}tre, Philippe},
journal={The Journal of Physical Chemistry A},
volume={112},
number={48},
pages={12393--12400},
year={2008},
publisher={ACS Publications}
}
@article{Simon2017,
title={Dissociation of polycyclic aromatic hydrocarbons: molecular dynamics studies},
author={Simon, Aude and Rapacioli, Mathias and Rouaut, Guillaume and Trinquier, Georges and Gad{\'e}a, FX},
journal={Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences},
volume={375},
number={2092},
pages={20160195},
year={2017},
publisher={The Royal Society Publishing}
}
@article{Rapacioli2018,
Author = {Rapacioli, Mathias and Cazaux, Stephanie and Foley, Nolan and Simon,
Aude and Hoekstra, Ronnie and Schlatholter, Thomas},
Title = {{Atomic hydrogen interactions with gas-phase coronene cations:
hydrogenation versus fragmentation}},
Journal = {{PHYSICAL CHEMISTRY CHEMICAL PHYSICS}},
Year = {{2018}},
Volume = {{20}},
Number = {{35}},
Pages = {{22427-22438}},
Month = {{SEP 21}},
DOI = {{10.1039/c8cp03024c}
}
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@article{Tomsic2013,
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author = {Tomsic, Anna and Andersson, Patrik U. and Marković, Nikola and Pettersson,Jan B. C.},
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title = {Collision dynamics of large water clusters on graphite},
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volume = {119},
number = {9},
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year = {2003},
doi = {10.1063/1.1594717},
URL = {https://doi.org/10.1063/1.1594717}
}
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@article{Elstner2014,
title={Density functional tight binding},
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journal={Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences},
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title={Validation of the density-functional based tight-binding approximation method for the calculation of reaction energies and other data},
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year={2005},
publisher={AIP}
}
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title={Self-consistent-charge density-functional tight-binding method for simulations of complex materials properties},
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title={Correction for dispersion and Coulombic interactions in molecular clusters with density functional derived methods: Application to polycyclic aromatic hydrocarbon clusters},
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year={2009},
publisher={AIP}
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@article{Simon2012,
title={Vibrational spectroscopy and molecular dynamics of water monomers and dimers adsorbed on polycyclic aromatic hydrocarbons},
author={Simon, Aude and Rapacioli, Mathias and Mascetti, Jo{\"e}lle and Spiegelman, Fernand},
journal={Physical Chemistry Chemical Physics},
volume={14},
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year={2012},
publisher={Royal Society of Chemistry}
}
@article{Simon2013,
title={Conformational dynamics and finite-temperature infrared spectra of the water octamer adsorbed on coronene},
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title={Size-dependent proton localization in hydrated uracil clusters: A joint experimental and theoretical study},
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