% ---------------------------------------------------------------------- % LATEX TEMPLATE FOR PhD THESIS % ---------------------------------------------------------------------- % based on Harish Bhanderi's PhD/MPhil template, then Uni Cambridge % http://www-h.eng.cam.ac.uk/help/tpl/textprocessing/ThesisStyle/ % corrected and extended in 2007 by Jakob Suckale, then MPI-CBG PhD programme % and made available through OpenWetWare.org - the free biology wiki %: Style file for Latex % Most style definitions are in the external file PhDthesisPSnPDF. % In this template package, it can be found in ./Latex/Classes/ \documentclass[twoside,11pt]{Latex/Classes/PhDthesisPSnPDF} \usepackage[tbtags]{amsmath} %\usepackage{adjustbox} %\usepackage{lipsum} \usepackage{multirow} \usepackage{array} \usepackage{tabularx} \usepackage[table, usenames, dvipsnames]{xcolor} \newcolumntype{C}[1]{>{\centering\let\newline\\\arraybackslash\hspace{0pt}}m{#1}} \usepackage[normalem]{ulem} \usepackage{mathptmx} \usepackage[11pt]{moresize} \usepackage{url} \newcommand{\red}[1]{{\color{red}#1}} \newcommand{\blue}[1]{{\color{blue}#1}} %\textcolor{red}{text} %\usepackage[utf8]{inputenc} %\usepackage{cleveref} %\crefname{equation}{equation}{equations} %\crefname{figure}{figure}{figures} %\crefname{section}{section}{sections} %: Macro file for Latex % Macros help you summarise frequently repeated Latex commands. % Here, they are placed in an external file /Latex/Macros/MacroFile1.tex % An macro that you may use frequently is the figuremacro (see introduction.tex) \include{Latex/Macros/MacroFile1} %: ---------------------------------------------------------------------- %: TITLE PAGE: name, degree,.. % ---------------------------------------------------------------------- % below is to generate the title page with crest and author name %if output to PDF then put the following in PDF header \ifpdf \pdfinfo { /Title (PhD and MPhil Thesis Classes) /Creator (TeX) /Producer (pdfTeX) /Author (YourName your@email.net) /CreationDate (D:YYYYMMDDhhmmss) %format D:YYYYMMDDhhmmss /ModDate (D:YYYYMMDDhhmm) /Subject (xyz) /Keywords (add, your, keywords, here) } \pdfcatalog { /PageMode (/UseOutlines) /OpenAction (fitbh) } \fi \title{Structure, Solvation, Thermodynamic and Fragmentation of Molecular Clusters} % ---------------------------------------------------------------------- % The section below defines www links/email for author and institutions % They will appear on the title page of the PDF and can be clicked \ifpdf \author{\href{mailto:your@email.net}{Linjie Zheng \break \break Supervised by\break J\'{e}r\^ome Cuny \& Mathias Rapacioli \break \break }} %\cityofbirth{} % uncomment this if your university requires this % % If city of birth is required, also uncomment 2 sections in PhDthesisPSnPDF % % Just search for the "city" and you'll find them. %\collegeordept{\href{http://www.something.net}{Facult\'e des Sciences et d'Ing\'enierie}} \collegeordept{\href{http://www.something.net}{Laboratoire de Chimie et Physique Quantiques}} \university{\href{http://www.something.net}{Universit\'{e} de Toulouse 3 Paul Sabatier}} \crest{\includegraphics[width=4cm]{upc-logo}} % The crest is a graphics file of the logo of your research institution. % Place it in ./0_frontmatter/figures and specify the width %%\crest{\includegraphics[width=4cm]{logo}} % If you are not creating a PDF then use the following. The default is PDF. \else \author{YourName} % \cityofbirth{born in XYZ} \collegeordept{CollegeOrDept} \university{University} %%% \crest{\includegraphics[width=4cm]{logo}} \fi %\renewcommand{\submittedtext}{change the default text here if neededxxx} \degree{PhD} \degreedate{month 2021} %xs ---------------------------------------------------------------------- % turn of those nasty overfull and underfull hboxes \hbadness=10000 \hfuzz=50pt % make blank pages really blank \usepackage{emptypage} %: -------------------------------------------------------------- %: FRONT MATTER: dedications, abstract,.. % -------------------------------------------------------------- \DeclareUnicodeCharacter{2009}{FIXME} \usepackage{textcomp} %Celsius \usepackage{graphicx} %\usepackage{hyperref} \begin{document} \setcitestyle{square} %\language{english} % sets line spacing \renewcommand\baselinestretch{1.2} %\renewcommand{\topfraction}{.75} \renewcommand{\floatpagefraction}{.8} %\newcommand{\boldm}[1] {\mathversion{bold}#1\mathversion{normal}} \baselineskip=18pt plus1pt %: ----------------------- generate cover page ------------------------ \maketitle % command to print the title page with above variables %: ----------------------- cover page back side ------------------------ % Your research institution may require reviewer names, etc. % This cover back side is required by Med Fac; uncomment if needed. \newpage \vspace{10mm} 1. Reviewer: Name \vspace{10mm} 2. Reviewer: \vspace{20mm} Day of the defense: \vspace{20mm} \hspace{70mm}Signature from head of PhD committee: %: ----------------------- abstract ------------------------ \emph{•} % Your institution may have specific regulations if you need an abstract and where it is to be placed in the document. The default here is just after title. %\include{0_frontmatter/abstract} % The original template provides and abstractseparate environment, if your institution requires them to be separate. I think it's easier to print the abstract from the complete thesis by restricting printing to the relevant page. %\begin{abstractseparate} % \input{Abstract/abstract} %\end{abstractseparate} %: ----------------------- tie in front matter ------------------------ \frontmatter \include{0_frontmatter/abstract} \include{0_frontmatter/dedication} \include{0_frontmatter/acknowledgement} %\include{0_frontmatter/glossary} %: ----------------------- contents ------------------------ \setcounter{secnumdepth}{3} % organisational level that receives a numbers \setcounter{tocdepth}{3} % print table of contents for level 3 \tableofcontents % print the table of contents % levels are: 0 - chapter, 1 - section, 2 - subsection, 3 - subsection %: ----------------------- list of figures/tables ------------------------ %%\listoffigures % print list of figures %%\listoftables % print list of tables %: ----------------------- glossary ------------------------ % Tie in external source file for definitions: /0_frontmatter/glossary.tex % Glossary entries can also be defined in the main text. See glossary.tex \include{0_frontmatter/glossary} %\begin{multicols}{1} % \begin{multicols}{#columns}[header text][space] %%\begin{footnotesize} % scriptsize(7) < footnotesize(8) < small (9) < normal (10) \begin{small} \printnomenclature[1.3cm] % [] = distance between entry and description %\label{nom} % target name for links to glossary \end{small} %\end{footnotesize} %\end{multicols} %: -------------------------------------------------------------- %: MAIN DOCUMENT SECTION % -------------------------------------------------------------- % the main text starts here with the introduction, 1st chapter,... \mainmatter \renewcommand{\chaptername}{} % uncomment to print only "1" not "Chapter 1" %: ----------------------- subdocuments ------------------------ % Parts of the thesis are included below. Rename the files as required. % But take care that the paths match. You can also change the order of appearance by moving the include commands. \include{1_GeneIntro/GeneIntro} \include{2_Introduction/introduction} % background information \include{3/structure_stability} \include{4/collision} \include{5/general_conclusion} %%\include{5/XYZ} %%\include{6/XYZ} %%\include{7/discussion} % discussion of results %%\include{8/materials_methods} % description of lab methods % -------------------------------------------------------------- %: BACK MATTER: appendices, refs,.. % -------------------------------------------------------------- % the back matter: appendix and references close the thesis %: ----------------------- bibliography ------------------------ % The section below defines how references are listed and formatted % The default below is 2 columns, small font, complete author names. % Entries are also linked back to the page number in the text and to external URL if provided in the BibTex file. % PhDbiblio-url2 = names small caps, title bold & hyperlinked, link to page \begin{multicols}{2} % \begin{multicols}{ # columns}[ header text][ space] \begin{tiny} % tiny(5) < scriptsize(7) < footnotesize(8) < small (9) \bibliographystyle{Latex/Classes/PhDbiblio-url2} % Title is link if provided \renewcommand{\bibname}{References} % changes the header; default: Bibliography \bibliography{6_backmatter/references} % adjust this to fit your BibTex file \end{tiny} \end{multicols} % -------------------------------------------------------------- % Various bibliography styles exit. Replace above style as desired. % in-text refs: (1) (1; 2) % ref list: alphabetical; author(s) in small caps; initials last name; page(s) %\bibliographystyle{Latex/Classes/PhDbiblio-case} % title forced lower case %\bibliographystyle{Latex/Classes/PhDbiblio-bold} % title as in bibtex but bold %\bibliographystyle{Latex/Classes/PhDbiblio-url} % bold + www link if provided %\bibliographystyle{Latex/Classes/jmb} % calls style file jmb.bst % in-text refs: author (year) without brackets % ref list: alphabetical; author(s) in normal font; last name, initials; page(s) %\bibliographystyle{plainnat} % calls style file plainnat.bst % in-text refs: author (year) without brackets % (this works with package natbib) % -------------------------------------------------------------- % according to Dresden med fac summary has to be at the end %\include{0_frontmatter/abstract} %: Declaration of originality /%\include{6_backmatter/acronyms} \include{6_backmatter/declaration} \end{document}