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https://github.com/TREX-CoE/trexio.git
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239 lines
7.0 KiB
C
239 lines
7.0 KiB
C
#include "trexio.h"
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#include <assert.h>
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#include <stdio.h>
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#include <stdlib.h>
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#include <stdint.h>
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#define TEST_BACKEND TREXIO_TEXT
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#define TREXIO_FILE "test_dset_sparse.dir"
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#define RM_COMMAND "rm -f -- " TREXIO_FILE "/*.txt " TREXIO_FILE "/*.txt.size " TREXIO_FILE "/.lock && rm -fd -- " TREXIO_FILE
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#define SIZE 100
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#define N_CHUNKS 5
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static int test_write_dset_sparse (const char* file_name, const back_end_t backend, const int64_t offset) {
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/* Try to write an array of sparse data into the TREXIO file */
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trexio_t* file = NULL;
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trexio_exit_code rc;
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/*================= START OF TEST ==================*/
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// open file in 'write' mode
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file = trexio_open(file_name, 'w', backend, &rc);
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assert (file != NULL);
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assert (rc == TREXIO_SUCCESS);
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// parameters to be written
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int32_t* index;
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double* value;
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index = calloc(4L*SIZE, sizeof(int32_t));
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value = calloc(SIZE, sizeof(double));
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for(int i=0; i<SIZE; i++){
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index[4*i] = 4*i;
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index[4*i+1] = 4*i+1;
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index[4*i+2] = 4*i+2;
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index[4*i+3] = 4*i+3;
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value[i] = 3.14 + (double) i;
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}
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// write mo_num which will be used to determine the optimal size of int indices
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if (trexio_has_mo_num(file) == TREXIO_HAS_NOT) {
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rc = trexio_write_mo_num(file, 1000);
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assert(rc == TREXIO_SUCCESS);
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}
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// write dataset chunks of sparse data in the file (including FAKE statements)
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uint64_t chunk_size = (uint64_t) SIZE/N_CHUNKS;
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uint64_t offset_f = 0UL;
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uint64_t offset_d = 0UL;
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if (offset != 0L) offset_f += offset;
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// write n_chunks times using write_sparse
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for(int i=0; i<N_CHUNKS; ++i){
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rc = trexio_write_mo_2e_int_eri(file, offset_f, chunk_size, &index[4*offset_d], &value[offset_d]);
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assert(rc == TREXIO_SUCCESS);
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offset_d += chunk_size;
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offset_f += chunk_size;
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}
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// close current session
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rc = trexio_close(file);
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assert (rc == TREXIO_SUCCESS);
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// free the allocated memeory
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free(index);
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free(value);
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/*================= END OF TEST ==================*/
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return 0;
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}
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static int test_has_dset_sparse (const char* file_name, const back_end_t backend) {
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/* Try to check the existence of a dataset of sparse data in the TREXIO file */
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trexio_t* file = NULL;
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trexio_exit_code rc;
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/*================= START OF TEST ==================*/
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// open file
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file = trexio_open(file_name, 'r', backend, &rc);
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assert (file != NULL);
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assert (rc == TREXIO_SUCCESS);
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// check that the group exists
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rc = trexio_has_mo_2e_int(file);
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assert(rc==TREXIO_SUCCESS);
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// check that the group does not exist
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rc = trexio_has_rdm(file);
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assert(rc==TREXIO_HAS_NOT);
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// first check that mo_2e_int_eri_lr (we only write non-lr component in this unit test)
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rc = trexio_has_mo_2e_int_eri_lr(file);
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assert(rc==TREXIO_HAS_NOT);
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// check that previous call to has_sparse did not create a file/dset
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rc = trexio_has_mo_2e_int_eri_lr(file);
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assert(rc==TREXIO_HAS_NOT);
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// now check that previously written mo_2e_int_eri exists
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rc = trexio_has_mo_2e_int_eri(file);
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assert(rc==TREXIO_SUCCESS);
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// close current session
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rc = trexio_close(file);
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assert (rc == TREXIO_SUCCESS);
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/*================= END OF TEST ==================*/
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return 0;
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}
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static int test_read_dset_sparse (const char* file_name, const back_end_t backend, const int64_t offset) {
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/* Try to read one chunk of dataset of sparse data in the TREXIO file */
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trexio_t* file = NULL;
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trexio_exit_code rc;
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/*================= START OF TEST ==================*/
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// open file
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file = trexio_open(file_name, 'r', backend, &rc);
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assert (file != NULL);
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assert (rc == TREXIO_SUCCESS);
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// define arrays to read into
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int32_t* index_read;
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double* value_read;
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uint64_t size_r = 40L;
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index_read = (int32_t*) calloc(4L*size_r,sizeof(int32_t));
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value_read = (double*) calloc(size_r,sizeof(double));
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// specify the read parameters, here:
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// 1 chunk of 10 elements using offset of 40 (i.e. lines No. 40--59) into elements of the array starting from 5
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int64_t chunk_read = 10L;
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int64_t offset_file_read = 40L;
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int offset_data_read = 5;
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int64_t read_size_check;
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read_size_check = chunk_read;
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if (offset != 0L) offset_file_read += offset;
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// read one chunk using the aforementioned parameters
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rc = trexio_read_mo_2e_int_eri(file, offset_file_read, &chunk_read, &index_read[4*offset_data_read], &value_read[offset_data_read]);
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assert(rc == TREXIO_SUCCESS);
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assert(chunk_read == read_size_check);
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assert(index_read[0] == 0);
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assert(index_read[4*offset_data_read] == 4 * (int32_t) (offset_file_read-offset));
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// now attempt to read so that one encounters end of file during reading (i.e. offset_file_read + chunk_read > size_max)
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offset_file_read = 97L;
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offset_data_read = 1;
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int64_t eof_read_size_check = SIZE - offset_file_read; // if offset_file_read=97 => only 3 integrals will be read out of total of 100
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if (offset != 0L) offset_file_read += offset;
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// read one chunk that will reach EOF and return TREXIO_END code
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rc = trexio_read_mo_2e_int_eri(file, offset_file_read, &chunk_read, &index_read[4*offset_data_read], &value_read[offset_data_read]);
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assert(rc == TREXIO_END);
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assert(chunk_read == eof_read_size_check);
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assert(index_read[4*size_r-1] == 0);
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assert(index_read[4*offset_data_read] == 4 * (int32_t) (offset_file_read-offset));
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// close current session
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rc = trexio_close(file);
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assert (rc == TREXIO_SUCCESS);
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// free the memory
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free(index_read);
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free(value_read);
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/*================= END OF TEST ==================*/
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return 0;
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}
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static int test_read_dset_sparse_size (const char* file_name, const back_end_t backend, const int64_t size_check) {
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/* Try to read a size of the dataset of sparse data in the TREXIO file */
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trexio_t* file = NULL;
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trexio_exit_code rc;
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/*================= START OF TEST ==================*/
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// open file
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file = trexio_open(file_name, 'r', backend, &rc);
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assert (file != NULL);
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assert (rc == TREXIO_SUCCESS);
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// define the variable to read into
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int64_t size_written;
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// read one chunk using the aforementioned parameters
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rc = trexio_read_mo_2e_int_eri_size(file, &size_written);
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assert(rc == TREXIO_SUCCESS);
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assert(size_written == size_check);
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// close current session
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rc = trexio_close(file);
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assert (rc == TREXIO_SUCCESS);
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/*================= END OF TEST ==================*/
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return 0;
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}
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int main(){
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/*============== Test launcher ================*/
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int rc;
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rc = system(RM_COMMAND);
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assert (rc == 0);
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// check the first write attempt (SIZE elements written in N_CHUNKS chunks)
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test_write_dset_sparse (TREXIO_FILE, TEST_BACKEND, 0);
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test_has_dset_sparse (TREXIO_FILE, TEST_BACKEND);
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test_read_dset_sparse (TREXIO_FILE, TEST_BACKEND, 0);
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test_read_dset_sparse_size(TREXIO_FILE, TEST_BACKEND, SIZE);
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// check the second write attempt (SIZE elements written in N_CHUNKS chunks)
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test_write_dset_sparse (TREXIO_FILE, TEST_BACKEND, SIZE);
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test_read_dset_sparse (TREXIO_FILE, TEST_BACKEND, SIZE);
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test_read_dset_sparse_size(TREXIO_FILE, TEST_BACKEND, SIZE*2);
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rc = system(RM_COMMAND);
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assert (rc == 0);
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return 0;
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}
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