#!/bin/bash set -x set -e # the parser below is needed when ./configure outputs several HDF5-related flags, which are then provided as input arguments to this script for arg in "$@" do if [[ $arg == "-L"* ]] && [[ $arg == *"hdf5"* ]]; then H5_LDFLAGS_LOCAL=$arg elif [[ $arg == "-I"* ]] && [[ $arg == *"hdf5"* ]]; then H5_CFLAGS_LOCAL=$arg fi done # check that both variables are set if [[ -z ${H5_LDFLAGS_LOCAL} ]] || [[ -z ${H5_CFLAGS_LOCAL} ]]; then echo "Paths to the HDF5 installation are not found. pkgconfig Python package will try to detect them." else # additional explicit export was needed on MacOS export H5_LDFLAGS=${H5_LDFLAGS_LOCAL} export H5_CFLAGS=${H5_CFLAGS_LOCAL} fi # Install/upgrade packages required for the installation python3 -m pip install --upgrade setuptools wheel twine python3 -m pip install -r requirements.txt # export NUMPY_INCLUDEDIR environment variable needed for the proper setup source tools/set_NUMPY_INCLUDEDIR.sh if [[ -z ${NUMPY_INCLUDEDIR} ]] ; then echo "NUMPY_INCLUDEDIR is not set. Check that numpy is installed (e.g. call pip freeze)." exit 1 fi # Create build directory and compile extension files (*.c) # --no-user-cfg disables custom .cfg files of the user machine, so that only setup.cfg is used python3 -s setup.py --no-user-cfg build # Local inplace build of the .so module with SWIG-produced pytrexio_wrap.c (from the SWIG documentation) #python3 setup.py build_ext --inplace --swig-opts="-modern" # Create distributions: # 1) sdist produces .tar.gz with all files necessary for manual compilation; # 2) bdist_whell produces .whl wheel distribution (see https://www.python.org/dev/peps/pep-0425/). python3 setup.py sdist bdist_wheel # Install pytrexio in the current environment from the aforementioned wheel # --force-reinstall is needed here because build-system pre-installs pytrexio in the environment # but does not install things in the corresponding site-packages directory python3 -m pip install dist/trexio-*.whl --force-reinstall # Run the command below in the root directory to install the package in 'editable' (-e) mode without dependencies (--no-deps) #python -m pip install -e . --no-deps # Uninstall pytrexio: this only works from the pytrexio root directory #python3 -m pip uninstall trexio # Test the current release by uploading to TestPyPI sandbox #python3 -m twine upload --repository testpypi dist/trexio-*.tar.gz # Upload updated version of PyTREXIO to PyPI #python3 -m twine upload dist/trexio-*.tar.gz # Cleaning rm -rf build dist trexio.egg-info # Additional information related to the installation of the TREXIO Python API #Removing MANIFEST.in leads to issues in the installation. In particular, the .c and .h source files do not get copied #from the src/ directory into the tar.gz which is produced by setup sdist command. #These source files are required to build the pytrexio.so extension module, which is needed for the Python API.