trexio

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3082dbbaf3 [WIP] adapt generator for string attributes [front,hdf5] q-posev 2021-06-04 15:36:18 +0200
5b1cf03aaf [WIP] add has/read/write functions for string attributes [front,hdf5] q-posev 2021-06-04 15:33:50 +0200
4549276e86 Add trexio_set_one_based in fortran interface Anthony Scemama 2021-06-04 15:00:13 +0200
77f2858548 Add index in files Anthony Scemama 2021-06-04 14:43:27 +0200
3f3927ec64 Deploying to gh-pages from @ TREX-CoE/trexio@84cc086228 🚀 scemama 2021-06-04 12:15:51 +0000
84cc086228

Merge pull request #48 from TREX-CoE/automake Anthony Scemama 2021-06-04 14:14:58 +0200
2e3df57344 Fixed parallel builds Anthony Scemama 2021-06-04 14:11:17 +0200
f1f47f4369 minor cleaning q-posev 2021-06-04 09:43:56 +0200
3ce9c57376 safer strncpy in the front end q-posev 2021-06-04 09:18:59 +0200
4fceb6624d fix error handling in write_group_dset q-posev 2021-06-03 17:33:31 +0200
52e636f610 fix error handling in read_group_dset q-posev 2021-06-03 17:32:50 +0200
c160de1a1b adapt tests to use max_str_len parameter q-posev 2021-06-03 16:13:57 +0200
40e9aa9234 introduce max_str_len parameter q-posev 2021-06-03 16:13:11 +0200
ed1393f5de Merge branch 'automake' of github.com:TREX-CoE/trexio into automake Anthony Scemama 2021-06-03 13:56:49 +0200
75af136d4f Moved sparse documentation in src/templates_front/templator_front.org Anthony Scemama 2021-06-03 13:56:45 +0200
313ab12c61 adapt tests to use TREXIO_DELIM as a delimeter q-posev 2021-06-03 13:42:56 +0200
aa4251b943 read_group_dset can operate on char* directly instead of char** q-posev 2021-06-03 13:41:43 +0200
d2bc25ef03 less allocations in the front end q-posev 2021-06-03 13:39:02 +0200
40bfc581ee use newline char as a delimeter q-posev 2021-06-03 10:26:19 +0200
5043d058bd Merge branch 'automake' of github.com:TREX-CoE/trexio into automake q-posev 2021-06-03 09:57:57 +0200
a5ae1d239b Improve HDF5 in configure Anthony Scemama 2021-06-03 01:25:20 +0200
06153d10cc add C test for file reopening to write missing blocks q-posev 2021-06-02 20:22:34 +0200
693f8d3846 fix file reopening for writing new variables q-posev 2021-06-02 20:19:39 +0200
093692c785 fix Fortran test + add clean-local target q-posev 2021-06-02 18:45:05 +0200
7a9d078859 remove append mode q-posev 2021-06-02 14:40:23 +0200
f5542571d1 remove test of append mode q-posev 2021-06-02 14:34:49 +0200
8f570d2fd9 fix C test q-posev 2021-06-02 14:24:27 +0200
0b5136f14c add error handling for an attempt to overwrite something q-posev 2021-06-02 14:23:58 +0200
6d1e9df1a3 Fixing HDF5 in configure Anthony Scemama 2021-06-02 12:09:26 +0200
ed66a8c0cf Fixed Fortran test Anthony Scemama 2021-06-02 11:54:07 +0200
6ee9221f33 Fix Makefile.am Anthony Scemama 2021-06-02 11:39:35 +0200
8aa4721758 Documentation Anthony Scemama 2021-06-02 11:19:03 +0200
40cecd1f4e Typo Anthony Scemama 2021-06-02 10:44:03 +0200
3a6e7c93af Function prototypes in tests Anthony Scemama 2021-06-02 10:27:11 +0200
f6407397cf Typo Anthony Scemama 2021-06-02 00:02:42 +0200
196224c63b use newline character as a delimeter for array of strings q-posev 2021-06-01 18:12:15 +0200
0f444074c9 better error handling [front] q-posev 2021-06-01 16:45:13 +0200
69ffb6c3b5 Tests fail Anthony Scemama 2021-06-01 15:03:37 +0200
13fe1e8690 [WIP] working tests with string converters q-posev 2021-06-01 14:59:08 +0200
6979c84c38 parse char* strings and convert them to char** for back ends q-posev 2021-06-01 14:58:16 +0200
f45fee6cbf explicit types for strings [HDF5] q-posev 2021-06-01 10:41:00 +0200
753c767ce2 first working prototype for string datasets [HDF5] q-posev 2021-05-31 16:42:11 +0200
edfe8817d1 [WIP] temporarily disable calls to text back end q-posev 2021-05-31 16:40:25 +0200
1647e76fcf [WIP] adapt generator for string datasets q-posev 2021-05-31 16:39:21 +0200
9142c21130 add C test for nucleus_label q-posev 2021-05-31 16:37:00 +0200
b5a6987758 first prototype of read/write string datasets q-posev 2021-05-31 13:26:52 +0200
c18b75a11d explicit string type in front end templates q-posev 2021-05-28 17:53:26 +0200
8b580fee4a Automake done. Need to improve tests Anthony Scemama 2021-05-28 13:36:39 +0200
893dda8581 Working on configure Anthony Scemama 2021-05-28 12:34:58 +0200
732780430d Working on automake Anthony Scemama 2021-05-28 12:23:19 +0200
b172b506ff Moved config.h in include Anthony Scemama 2021-05-28 12:19:15 +0200
80bf224a46 Deploying to gh-pages from @ TREX-CoE/trexio@e46d314a5f 🚀 scemama 2021-05-28 10:17:31 +0000
e46d314a5f Check for C99 Anthony Scemama 2021-05-28 12:16:32 +0200
d21797e13e Deploying to gh-pages from @ TREX-CoE/trexio@1c0b17f809 🚀 scemama 2021-05-28 09:44:35 +0000
1c0b17f809 Removed obsolete AC_PROG_CC_C99 Anthony Scemama 2021-05-28 11:43:34 +0200
bddb2e0269 synchronize trex.json Anthony Scemama 2021-05-27 23:31:30 +0200
7f241687a8 Added autogen.sh Anthony Scemama 2021-05-27 23:29:38 +0200
42f81b2cc6 prepare templates and files for datasets with strings [all] q-posev 2021-05-27 15:14:01 +0200
7ddb9228f1 split dataset files in _str and _data groups q-posev 2021-05-27 15:03:13 +0200
70531b0ff6 more general group_dset_h5_dtype variable in the templates [hdf5] q-posev 2021-05-27 13:59:45 +0200
1575c1f4d0 add functions for has/read/write_dset_str [front] q-posev 2021-05-27 13:58:35 +0200
9d63bf0b4a Deploying to gh-pages from @ TREX-CoE/trexio@29d927675e 🚀 q-posev 2021-05-26 17:12:38 +0000
29d927675e

Major refactoring of the generator script (#47) Evgeny Posenitskiy 2021-05-26 19:11:46 +0200
af7c49c2cd add consisteny check for dimensioning variables q-posev 2021-05-26 18:42:01 +0200
c971d7d310 adapt build_trexio script q-posev 2021-05-26 17:50:16 +0200
fb9dba668f minor cleaning and changes q-posev 2021-05-26 17:36:28 +0200
febe64a7e2 add documentation strings to the functions q-posev 2021-05-26 17:08:29 +0200
df84f9afe2 rearrange parameters q-posev 2021-05-26 16:29:27 +0200
da93863a33 comment main code blocks q-posev 2021-05-26 16:28:35 +0200
73238290c0 cleaning q-posev 2021-05-26 16:16:14 +0200
cdb7742356 transition to helper dictionaries q-posev 2021-05-26 15:44:49 +0200
4ff1035660 do not define triggers in the master script q-posev 2021-05-26 13:57:42 +0200
b476e6a303 add function for text groups [iterative+recursive upd] q-posev 2021-05-25 17:42:45 +0200
d0e8efda3b add recursive replaces for datasets q-posev 2021-05-25 14:37:07 +0200
685a3995af added recursive replacer for numbers q-posev 2021-05-25 11:26:00 +0200
d84dfaea8d Deploying to gh-pages from @ TREX-CoE/trexio@331e3d64fd 🚀 scemama 2021-05-24 22:02:57 +0000
331e3d64fd Added prim_factor Anthony Scemama 2021-05-25 00:01:29 +0200
9df75fcf69 add function to iteratively populate string based on triggers list q-posev 2021-05-24 19:45:27 +0200
a9444173e4 add dset_per_group dict q-posev 2021-05-24 18:14:30 +0200
1618441112 Fixed JSON Anthony Scemama 2021-05-24 15:45:30 +0200
40f436b50d Deploying to gh-pages from @ TREX-CoE/trexio@c5779f17f9 🚀 scemama 2021-05-24 13:01:58 +0000
c5779f17f9 Detect error in JSON.org Anthony Scemama 2021-05-24 15:01:04 +0200
c025c6d4a1 oneliner for paths to templates q-posev 2021-05-21 18:38:17 +0200
6beb0e916d no need to have group_group_dset when propagatin dsets q-posev 2021-05-21 18:10:00 +0200
f993bca631 remove files_exclude since post-processing does the job q-posev 2021-05-21 17:01:17 +0200
ea20a66e1a create functions for dictionary parsers in the external file q-posev 2021-05-21 16:00:24 +0200
4ffd86f41c minor cleaning q-posev 2021-05-21 14:27:09 +0200
b39403aa5f Deploying to gh-pages from @ TREX-CoE/trexio@32a44df569 🚀 scemama 2021-05-21 12:05:16 +0000
32a44df569 More documentation in TREX JSON Anthony Scemama 2021-05-21 14:04:19 +0200
255a65a8c7 Deploying to gh-pages from @ TREX-CoE/trexio@9ec75c2892 🚀 scemama 2021-05-21 10:11:30 +0000
9ec75c2892 Added trex.org to generate json Anthony Scemama 2021-05-21 12:10:29 +0200
cdab5498be Deploying to gh-pages from @ TREX-CoE/trexio@1d5c452071 🚀 scemama 2021-05-19 20:03:41 +0000
1d5c452071 Not bugs found with scan-build Anthony Scemama 2021-05-19 22:02:40 +0200
c7fd173205 Deploying to gh-pages from @ TREX-CoE/trexio@6ffc4ccfb2 🚀 scemama 2021-05-19 14:18:25 +0000
6ffc4ccfb2 Fixed Fortran interface Anthony Scemama 2021-05-19 16:17:24 +0200
1820097a81 Deploying to gh-pages from @ TREX-CoE/trexio@0cc24bd21e 🚀 q-posev 2021-05-19 13:05:19 +0000
0cc24bd21e error handling for trexio_text_deinit function q-posev 2021-05-19 15:03:15 +0200
f57c47e78e Deploying to gh-pages from @ TREX-CoE/trexio@f2c79827b5 🚀 q-posev 2021-05-18 10:16:43 +0000
f2c79827b5

Merge pull request #46 from TREX-CoE/fix-int-dsets Evgeny Posenitskiy 2021-05-18 12:15:48 +0200
f77a5af4e0 fix a typo q-posev 2021-05-18 12:07:37 +0200