f45fee6cbf
explicit types for strings [HDF5]
2021-06-01 10:41:00 +02:00
753c767ce2
first working prototype for string datasets [HDF5]
2021-05-31 16:42:11 +02:00
edfe8817d1
[WIP] temporarily disable calls to text back end
2021-05-31 16:40:25 +02:00
b5a6987758
first prototype of read/write string datasets
2021-05-31 13:26:52 +02:00
c18b75a11d
explicit string type in front end templates
2021-05-28 17:53:26 +02:00
8b580fee4a
Automake done. Need to improve tests
2021-05-28 13:36:39 +02:00
42f81b2cc6
prepare templates and files for datasets with strings [all]
2021-05-27 15:14:01 +02:00
70531b0ff6
more general group_dset_h5_dtype variable in the templates [hdf5]
2021-05-27 13:59:45 +02:00
1575c1f4d0
add functions for has/read/write_dset_str [front]
2021-05-27 13:58:35 +02:00
Evgeny Posenitskiy
29d927675e
Major refactoring of the generator script ( #47 )
...
* minor cleaning
* create functions for dictionary parsers in the external file
* remove files_exclude since post-processing does the job
* no need to have group_group_dset when propagatin dsets
* oneliner for paths to templates
* add dset_per_group dict
* add function to iteratively populate string based on triggers list
* added recursive replacer for numbers
* add recursive replaces for datasets
* add function for text groups [iterative+recursive upd]
* do not define triggers in the master script
* transition to helper dictionaries
* cleaning
* comment main code blocks
* rearrange parameters
* add documentation strings to the functions
* minor cleaning and changes
* adapt build_trexio script
* add consisteny check for dimensioning variables
2021-05-26 19:11:46 +02:00
1d5c452071
Not bugs found with scan-build
2021-05-19 22:02:40 +02:00
0cc24bd21e
error handling for trexio_text_deinit function
2021-05-19 15:03:15 +02:00
q-posev
f77a5af4e0
fix a typo
2021-05-18 12:07:37 +02:00
q-posev
047153b7c1
remove NULL pointer check for file_name in text
2021-05-18 11:43:05 +02:00
q-posev
d97c111284
fix the default precision of int datasets
2021-05-18 11:42:26 +02:00
692f45ed7f
Correct rank in Fortran interface
2021-05-08 00:35:53 +02:00
cd8332a3e5
Added notes for sparse data structures
2021-05-07 00:02:12 +02:00
87bb6fcb6e
Better error messages
2021-05-06 19:56:42 +02:00
7302f02b9c
Improved error messages
2021-05-06 19:54:37 +02:00
181fe988f3
Fixed append problem
2021-05-06 19:40:27 +02:00
1cfa313d07
Error messages
2021-05-06 18:25:51 +02:00
q-posev
6e54e89d24
inttypes macros for rdm
2021-05-06 18:17:41 +02:00
20d551a70b
include inttypes to fix portability issues in text back end
2021-05-06 18:08:28 +02:00
57655a8344
add error message for an attempt to overwrite dimensioning variables
2021-05-06 17:44:31 +02:00
db5544e810
Improved error codes
2021-05-06 15:09:50 +02:00
5e3c085fb7
discard patch for rdm
2021-05-06 09:38:28 +02:00
d3b35ae453
discard portability patch
2021-05-06 09:35:48 +02:00
q-posev
48d300674a
portability patch for mac
2021-05-06 09:19:05 +02:00
c7349ef2ef
datarootdir in src/Makefile.in
2021-05-05 13:46:40 +02:00
f272d27863
pkgconfig
2021-05-05 12:17:15 +02:00
f7dea1fd1c
Fixed configure and install
2021-05-05 11:37:48 +02:00
9c2b240418
more portable HDF5 back end
2021-05-04 20:22:58 +02:00
5f4f94646f
replace ULLONG with UINT64
2021-05-04 14:16:12 +02:00
daf3fdeb8b
Fixed warning about strlen in strncpy
2021-05-04 10:03:32 +02:00
03f58a649e
fixed make install and introduced uninstall targets
2021-05-03 15:15:49 +02:00
q-posev
a9c506dd15
fix distcheck rule
2021-04-30 20:10:06 +02:00
q-posev
be8386f770
rm libtrexio after creating a copy in the lib directory
2021-04-30 19:58:38 +02:00
4578fb1a2b
adapt rules for new structure of the root directory
2021-04-30 19:04:43 +02:00
51660199c2
create tests directory
2021-04-30 15:50:41 +02:00
1e9581e2d2
move tests to the corresponding directory
2021-04-30 15:50:05 +02:00
caee3576b7
move generator to tools directory
2021-04-30 14:22:32 +02:00
203e9027a6
fix paths
2021-04-30 14:12:23 +02:00
faa936cc54
move build_trexio script to tools directory
2021-04-30 13:50:51 +02:00
Evgeny Posenitskiy
818d66d4d3
Autoconfig with optional HDF5 compilation ( #42 )
...
Makefile.in:
* recursive build;
* advanced make targets;
* major support for autoconf and minor for package managers.
configure.ac:
* optional HDF5 compilation [default: --with-hdf5];
* add -fPIC to CFLAGS if missing.
2021-04-28 15:30:18 +02:00
08a28c9ae4
Using pkg-config for hdf5 in Makefile
2021-04-26 22:46:43 +02:00
728d7bb3ad
Fixed test : coord(3,12)
2021-04-20 01:34:11 +02:00
Evgeny Posenitskiy
8defdaa0c0
org-mode to html conversion for the documentation website ( #41 )
...
* working static html doc website generated from org-mode files
* fix build_doc script
* add gitignore
* add gitignore
* clean html garbage
* documented hdf5
* documented text back end
2021-04-09 16:45:44 +02:00
7e55933fea
make consistent hierarchy in org-mode files
2021-04-08 11:40:50 +02:00
b656917323
consistent naming init/deinit instead init/finalize in back ends
2021-04-08 11:31:51 +02:00
b8c9bfa2df
renamed build_trex script
2021-04-08 11:25:42 +02:00
Evgeny Posenitskiy
c43259176d
Add 32-bit funcs and document front end ( #39 )
...
* 32-bit functions
* adapt tests since the default write/read_num is now 32-bit
* minor cleaning in the generator
* add test for _32 functionality
* rm stdint-based types from test
* documentation
* rm trailing whitespaces in emacs
* change TREXIO_INVALID_BACK_END
* update gitignore
2021-04-07 17:37:04 +02:00
4e47e497d5
Table to generate error codes and string_of_error function
2021-04-01 22:48:04 +02:00
0419a8c87b
Improved Makefile
2021-04-01 22:45:42 +02:00
200473ad16
generate full library + dummy fix for group names
2021-03-30 21:42:42 +02:00
42df2253eb
better error handling
2021-03-30 16:03:34 +02:00
7d24442984
FIX: truncated precision of floats [text]
2021-03-30 15:44:26 +02:00
5fb1418f9b
BUG: truncated precision for doubles [text]
2021-03-30 14:20:46 +02:00
53d51a7902
add tests for has_ functionality
2021-03-30 11:56:04 +02:00
0d0bed0585
forgot text templator
2021-03-30 11:51:05 +02:00
068beacb07
working has_ functions [all]
2021-03-30 11:50:02 +02:00
679c462d63
enhanced fortran interface
2021-03-29 14:34:41 +02:00
Evgeny Posenitskiy
18c6fb845f
Smart deallocation of dsets upon failure in read_group [text] ( #35 )
...
* fix FC variable
* smart deallocation of dsets + some cleaning in templator [text]
2021-03-29 13:27:54 +02:00
5fc0371276
Compliant with CERT
2021-03-29 00:37:56 +02:00
086a34d5b1
const
2021-03-29 00:34:56 +02:00
3f2261ea9b
Undefined num_id in HDF5
2021-03-29 00:34:03 +02:00
9edeb7825e
strncat
2021-03-28 22:41:49 +02:00
56389752de
const
2021-03-28 22:38:32 +02:00
4e68a808a0
scope and shadowed variable
2021-03-28 22:14:24 +02:00
35daf9db05
Redundant assignments
2021-03-28 22:10:56 +02:00
e10285efee
Format strings
2021-03-28 22:01:56 +02:00
f1e02350ac
Format unsigned
2021-03-28 16:35:32 +02:00
966efc66c1
Fixed: duplicate rc == EOF
2021-03-28 16:32:42 +02:00
000aad336c
Fixed: file not const when write
2021-03-28 16:31:15 +02:00
83fa39ee30
Fixed unsigned int < 0
2021-03-28 16:24:35 +02:00
700803528f
Format for unsigned long + overflows in struct
2021-03-28 16:22:14 +02:00
f8dae45c10
Changed i++ into ++i in loops
2021-03-28 15:48:27 +02:00
ea61a24291
Fixed: uint can't be <0
2021-03-28 15:45:18 +02:00
6cb7f4e074
Fixed: rc was not checked for multiple dims
2021-03-28 15:43:49 +02:00
10483b882c
Add cppcheck in Makefile
2021-03-28 15:24:13 +02:00
1b0a60f2fe
use strncpy instead of strcpy to avoid possible buffer overflows
2021-03-28 11:18:50 +02:00
c56bc49ddd
Fixed resource leak (fclose)
2021-03-27 19:40:27 +01:00
ebb5ff62d3
better make for tests
2021-03-25 11:42:13 +01:00
aa160d9bea
make build scripts consistent
2021-03-25 11:41:13 +01:00
91fdbf20df
better test [fortran]
2021-03-24 17:22:58 +01:00
81810669ab
link module when compiling fortran test
2021-03-24 17:14:23 +01:00
f8a28a037d
more fortran-ic trexio_open
2021-03-24 17:13:53 +01:00
c0b6f95e52
more fortran-ic test
2021-03-24 16:06:04 +01:00
f7c78e73d2
more fortran-ic interface + flexible dtypes for dsets
2021-03-24 16:05:38 +01:00
8d3b35736c
working read_dset + structured test file [fortran]
2021-03-24 11:14:47 +01:00
4bdd6ea8f3
adapt for fortran interface
2021-03-23 18:19:35 +01:00
cf26966b70
working write_dset [fortran]
2021-03-23 18:12:53 +01:00
0a28b5e5a5
working read_num [fortran]
2021-03-23 16:34:13 +01:00
d680120efe
working write_num [fortran]
2021-03-23 14:57:11 +01:00
ac44fc29a6
add test, works for h5 but failt for txt
2021-03-22 16:40:45 +01:00
baa50bdbe2
adapt for fortran
2021-03-22 16:15:37 +01:00
7f3dc0879c
wip: write nums
2021-03-22 16:15:07 +01:00
4cf1d966d0
better fix
2021-03-19 09:12:10 +01:00
22a87a6a55
fix the bash script
2021-03-18 21:13:13 +01:00
696d867725
minor cleaning in the generator
2021-03-18 21:12:28 +01:00
e322a6e42d
add gitignore for src
2021-03-18 21:11:56 +01:00
