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ca234fb569
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dimension in write_dset populated properply + error handling
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2021-03-10 11:48:43 +01:00 |
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fba6c88973
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proper path-ing using os.path
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2021-03-10 10:27:44 +01:00 |
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ba0f14a6cc
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TODO: properly populate dimensions in write_dset
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2021-03-09 16:31:12 +01:00 |
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50841e1937
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wip: generate read/write_dset functions
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2021-03-09 15:48:32 +01:00 |
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ebc7aa5d40
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dummy generator for auxiliary files
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2021-03-09 11:58:47 +01:00 |
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9b54f71f4a
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initial generator
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2021-03-05 16:50:44 +01:00 |
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30927be21d
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initial templator
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2021-03-05 16:50:26 +01:00 |
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Evgeny Posenitskiy
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e88a228bb5
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Merge pull request #22 from TREX-CoE/change_h5rw_datasets
hdf5_read/write_dset decoupled from the parent group
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2021-03-05 08:59:44 +01:00 |
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Evgeny Posenitskiy
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b964b73bbe
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removed bracket
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2021-03-04 20:43:44 +01:00 |
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Evgeny Posenitskiy
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e624be1435
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Merge branch 'master' into change_h5rw_datasets
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2021-03-04 20:21:08 +01:00 |
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1df9cd7177
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uint32 rank and better error handling
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2021-03-04 19:39:06 +01:00 |
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05d55028c4
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add error codes for invalid returns
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2021-03-04 19:36:32 +01:00 |
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db1f1d6980
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fix leaking memory
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2021-03-04 18:53:13 +01:00 |
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e52cfbafea
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dummy write and smart read
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2021-03-04 15:02:23 +01:00 |
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aee737fa23
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provide dimensions and decouple dataset read/write from parent group
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2021-03-04 14:03:34 +01:00 |
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88d2808200
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missing mode in rdm
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2021-03-04 14:00:56 +01:00 |
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Evgeny Posenitskiy
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aa5dd6ea83
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Merge pull request #21 from TREX-CoE/correct-append
Correct append on non-existing file
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2021-03-04 09:45:00 +01:00 |
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a3e2a3920d
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modify the test to fail when appending on non-existing file
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2021-03-04 09:41:27 +01:00 |
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9494f02e37
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append on non-existing file should fail
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2021-03-04 09:41:00 +01:00 |
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Evgeny Posenitskiy
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0328564967
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Merge pull request #20 from TREX-CoE/file-locking
Locking asked from the front to the back
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2021-03-04 09:27:15 +01:00 |
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3ac1f8f135
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Locking asked from the front to the back
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2021-03-03 19:20:01 +01:00 |
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d2efb67a9d
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stupid but working implementation of read/write_dset decoupled from read_group
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2021-03-03 15:59:30 +01:00 |
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a9a00e8bec
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make consistent with _hdf5.org file
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2021-03-03 13:33:15 +01:00 |
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Evgeny Posenitskiy
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563d395d24
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Merge pull request #15 from TREX-CoE/append_mode
Append mode for trexio_open; fixes #13
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2021-03-03 13:21:18 +01:00 |
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b8c569f9a3
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add test to read/append non-existing files
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2021-03-03 13:19:47 +01:00 |
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c370434dcf
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add append mode to front end
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2021-03-03 11:50:04 +01:00 |
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ccf03370f7
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add test for append in h5
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2021-03-03 11:49:42 +01:00 |
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886a3d2162
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working append mode for hdf5
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2021-03-03 11:49:21 +01:00 |
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Evgeny Posenitskiy
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d3f2fd6263
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Merge pull request #14 from TREX-CoE/text
Rewrote text back end
Split org file
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2021-03-03 10:13:02 +01:00 |
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997bc92f52
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Forgot org files
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2021-03-03 10:09:50 +01:00 |
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d4b2ff5c6e
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Rewrote text back end
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2021-03-03 02:28:00 +01:00 |
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Evgeny Posenitskiy
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f0bc65555f
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Merge pull request #12 from TREX-CoE/change-trex-json
Change trex json
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2021-03-02 16:54:38 +01:00 |
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27f9724772
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correct (non)local_n_max naming
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2021-03-02 16:52:05 +01:00 |
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b798205974
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add num_ prefix to (non)local_n_max
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2021-03-02 16:46:20 +01:00 |
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0f79754e9f
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typos and commas
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2021-03-02 16:43:02 +01:00 |
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cd7f5f53ed
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Update README.md
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2021-03-02 14:30:46 +01:00 |
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49a73b6d75
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Renamed trio in trexio
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2021-03-02 13:57:01 +01:00 |
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c58231e135
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Added trex.config in JSON format.
Closes #1
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2021-03-02 13:04:13 +01:00 |
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Evgeny Posenitskiy
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c3fd60fd6d
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Merge pull request #11 from TREX-CoE/consecutive-test
consecutive testing for hdf5; fixes #10
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2021-03-02 11:45:22 +01:00 |
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a0172e26c1
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consecutive testing for hdf5
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2021-03-02 11:41:25 +01:00 |
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cbb936564e
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added write_h5 test
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2021-03-02 11:27:09 +01:00 |
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Evgeny Posenitskiy
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ff28a435d9
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Merge pull request #2 from TREX-CoE/hdf5-backend
HDF5 backend
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2021-03-02 11:04:01 +01:00 |
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Evgeny Posenitskiy
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2b228915ac
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Merge branch 'master' into hdf5-backend
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2021-03-02 11:03:15 +01:00 |
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9cf8d26110
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hdf5 backend working
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2021-03-02 10:55:13 +01:00 |
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472dd5fd91
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add test to read nucleus_coord from hdf5
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2021-02-23 18:20:14 +01:00 |
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92f6a8fa81
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replaced some ints with unsigned ints
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2021-02-23 18:18:20 +01:00 |
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29b4e4d313
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WIP: hdf5: read_nucleus_coord works
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2021-02-23 18:17:14 +01:00 |
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ac9e1aa410
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change int64 to uint64
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2021-02-22 11:40:13 +01:00 |
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258266004b
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TODO in org file
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2021-02-22 10:56:16 +01:00 |
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0c60cf78d9
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Example works with no memory leaks
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2021-02-20 18:16:10 +01:00 |
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