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527417cd8f
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fix type conversion for 32-bit indices
|
2021-11-18 14:33:18 +01:00 |
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72c355c7cc
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Top-level CMakeLists with subdirectories
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2021-11-17 14:00:35 +01:00 |
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954ee4216c
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add trexio_has_backend function to the C and Fortran APIs
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2021-11-02 11:05:27 +01:00 |
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7f3ee3cc18
|
reset back end values and add TREXIO_BACK_END_MISSING error
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2021-11-02 10:32:00 +01:00 |
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5504bc0fe6
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wrap TREXIO_INVALID_BACK_END definition in preprocessor macro
|
2021-11-01 13:22:46 +01:00 |
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d42dc7f449
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optional HDF5 compilation
via configure script and pre-processor macros
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2021-11-01 11:55:34 +01:00 |
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1812deb9dd
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Check return value of mkdtemp
|
2021-10-14 10:53:15 +02:00 |
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5cf12131f1
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Fix text back end for read-only directories (make distcheck in qmckl)
|
2021-10-13 17:43:15 +02:00 |
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d017306706
|
Better error handling with open in text back end
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2021-10-13 16:13:24 +02:00 |
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954b26ccff
|
Update README
|
2021-10-13 14:24:54 +02:00 |
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fb9c95bd61
|
add version attributes to the Fortran module
|
2021-10-08 13:55:56 +02:00 |
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947a8a12f8
|
Fix bug due to PACKAGE_VERSION definition in trexio.h
|
2021-10-07 09:54:19 +02:00 |
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68284161d3
|
downgrade numpy.i SWIG interface to numpy 1.17.3
|
2021-09-30 17:22:50 +02:00 |
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2e2dac3982
|
modify rc_open only if it is not a NULL pointer
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2021-09-24 12:23:59 +02:00 |
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67b00efa9c
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handle return error of trexio_open in the Python API
|
2021-09-22 16:40:55 +02:00 |
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9457a826d2
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return error code from trexio_open [C, Fortran]
|
2021-09-22 14:50:22 +02:00 |
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14472cda48
|
better error handling in case of invalid dimensioning variable
|
2021-09-22 11:33:27 +02:00 |
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389d265f7f
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fix cppcheck warnings regarding redundant size_dset_str checks
|
2021-09-21 16:08:04 +02:00 |
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d1a9af4185
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remove blank spaces in front of pointers
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2021-09-21 15:54:11 +02:00 |
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788f7e666d
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read single numerical attributes based on _isSet bool flag
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2021-09-21 15:41:12 +02:00 |
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d5405e700c
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raise TREXIO_INVALID_ARG_2 also when writing zero as dimensioning variable
|
2021-09-21 14:35:29 +02:00 |
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6459543afd
|
better front end documentation for numerical attributes
|
2021-09-21 10:58:07 +02:00 |
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11a17c65d3
|
add attr_ prefix to the template file name for numerical attributes
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2021-09-21 10:41:37 +02:00 |
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c22e9d2925
|
put back sanity check that dimensioning variables are positive
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2021-09-20 17:00:05 +02:00 |
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ce0d98b984
|
add conversion of float-like attributes into an output tuple
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2021-09-20 15:52:55 +02:00 |
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4b9827048f
|
adapt the templates in back ends
|
2021-09-20 15:51:36 +02:00 |
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261e7c8b84
|
modify front end for more general numerical attributes
|
2021-09-20 13:16:44 +02:00 |
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11dadaab36
|
add tutorial HTML page to the main documentation
|
2021-09-15 13:43:57 +02:00 |
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f251f0afba
|
remove unnecessary comments in the SWIG interface
|
2021-09-14 17:30:05 +02:00 |
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d04106f72d
|
max_str_len should be int32_t to properly check for negative values
|
2021-09-13 13:35:45 +02:00 |
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1589995775
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do not use warnings for an attempt to overwrite in the Python API
|
2021-09-13 11:46:31 +02:00 |
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2bd4ef9bfd
|
add has_ functions to the Python API
|
2021-09-13 11:29:00 +02:00 |
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77e3f1ac11
|
print UserWarning instead of raising Error for an attempt to overwrite data
following suggestion of Vijay G.C.
|
2021-09-12 14:24:50 +02:00 |
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d060808467
|
do not reveal paths to trexio (security concerns)
|
2021-09-12 13:36:24 +02:00 |
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12dd1fd8dc
|
apply some suggestions from cppcheck
|
2021-09-12 13:25:03 +02:00 |
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40d5fc31fc
|
check that the data object exists before reading it from the file
|
2021-09-10 09:38:26 +02:00 |
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67e59f156c
|
explicitly provide __version__ attribute of the trexio module
|
2021-09-08 19:28:18 +02:00 |
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96678fea2e
|
adapt write functions to receive multidimensional arrays or lists
|
2021-09-07 17:14:23 +02:00 |
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3e82fd9ae8
|
FIX: a bug that was leading to Python and valgrind errors
|
2021-08-31 12:11:22 +03:00 |
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74c69bb293
|
better Exception handling with custom exception class
|
2021-08-30 18:04:35 +03:00 |
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5a2b4d96a7
|
reshape output arrays by default when reading from the file
|
2021-08-27 16:08:39 +03:00 |
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7b5ebf6272
|
implement TREXIO File class and change import of pytrexio module
|
2021-08-26 17:01:53 +03:00 |
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4c28a4cac8
|
add type converters for numerical arrays in read/write Python functions
|
2021-08-26 13:14:46 +03:00 |
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1dcd32ef7d
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add SWIG typemaps for safe API calls in single and double precision
|
2021-08-25 13:31:17 +03:00 |
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ed7e3902e2
|
add memory-safe functions in single or double precision
|
2021-08-24 13:32:01 +03:00 |
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2911e91941
|
make dim an optional argument in read_ functions
if dim is None - the function read all necessary dimensions from the TREXIO file
|
2021-08-24 12:51:43 +03:00 |
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6f7c23aa11
|
add missing annotations
|
2021-08-21 13:13:55 +03:00 |
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4fe86ee980
|
add Python docstrings for API functions
+ move definition of Fortran and Python back ends from Constant Prefixes to Back Ends section
|
2021-08-21 12:47:36 +03:00 |
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5d5025ae1d
|
get rid of _safe suffix and add dimension to read_dset_str functions
|
2021-08-20 13:43:15 +03:00 |
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831973fc8e
|
better python compilation
|
2021-08-18 16:28:43 +03:00 |
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902147b45b
|
better structure of the python directory
|
2021-08-18 15:40:42 +03:00 |
|
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9cc552409f
|
rename the front-end Python module
|
2021-08-18 13:30:03 +03:00 |
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f0bccee32d
|
single top-level import of pytrexio resolves bug with caching
|
2021-08-18 13:28:37 +03:00 |
|
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|
0b223b9d6e
|
return type cast of exit codes and back ends in C
add top-level string_of_error function in Python
|
2021-08-14 12:27:11 +03:00 |
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721352cb89
|
add missing support for reading single string attributes
|
2021-08-11 16:01:36 +03:00 |
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209f4506c8
|
update gitignore
|
2021-08-11 16:01:04 +03:00 |
|
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2be1abd571
|
add Python front end
|
2021-08-11 15:59:58 +03:00 |
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ec7a39f6c2
|
strict int types for DIM1 and arrays
|
2021-08-06 16:24:11 +03:00 |
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808adc7cd8
|
add typemaps and tests for numpy int arrays
+ some cleaning in the Python test and SWIG interface files
|
2021-08-06 14:04:29 +03:00 |
|
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1388ddef80
|
fix warnings produced during compilation of the Python extension module
|
2021-08-06 12:06:42 +03:00 |
|
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|
d0c19e0ce0
|
pytrexio build and pip install working
|
2021-08-05 17:55:34 +03:00 |
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|
60c28c1f3b
|
rename python test and add temporary TODO
|
2021-08-04 14:13:23 +03:00 |
|
|
|
9a28b8d4bc
|
Revert "create python directory and add TODO objectives"
This reverts commit 6ce91a6669.
|
2021-08-04 12:07:27 +03:00 |
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6ce91a6669
|
create python directory and add TODO objectives
|
2021-08-04 10:18:36 +03:00 |
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e0162d4570
|
return double datasets as numpy arrays using numpy.i and safe API
|
2021-07-28 15:59:29 +02:00 |
|
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ea0ea0ac38
|
move from distutils to setuptools
sdist and install arguments of setup.py work!
|
2021-07-28 15:57:42 +02:00 |
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f3dbfc7be2
|
added License and install_requires in setup.py + cleaning
|
2021-07-28 10:33:33 +02:00 |
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da5a990acc
|
add memory-safe API for numerical datasets
|
2021-07-28 10:19:00 +02:00 |
|
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9f4176a8b6
|
resolve major compiler warnings produced by distutils
|
2021-07-27 11:06:06 +02:00 |
|
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|
171cf1662b
|
ignore __pycache__
|
2021-07-26 19:28:56 +02:00 |
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9bbae8fd7c
|
replace some integers with TREXIO-native constants
|
2021-07-26 19:27:45 +02:00 |
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1f98604d58
|
add pattern matching for arrays of strings + comments
|
2021-07-26 18:49:26 +02:00 |
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12c2a3a014
|
update gitignore
|
2021-07-26 18:43:49 +02:00 |
|
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8c6289a8ba
|
build Python module using pythonic distutils
|
2021-07-26 18:43:15 +02:00 |
|
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|
4faee98092
|
Merge branch 'master' into swig-python
|
2021-07-23 16:38:06 +02:00 |
|
|
|
578819afe7
|
do not propagate the local user name from config.h to trexio.h
|
2021-07-23 16:19:15 +02:00 |
|
|
|
2f876ef7cd
|
write TREXIO version in the file if not done yet
|
2021-07-23 15:55:16 +02:00 |
|
|
|
856412f06a
|
propagate package version and user name to trexio.h
|
2021-07-23 15:49:42 +02:00 |
|
|
|
836603fd32
|
do no wrap-up the code from back ends and private header
|
2021-07-20 14:22:54 +02:00 |
|
|
|
678f90f86a
|
add a note on alternative way to re-define ill-defined constants
|
2021-07-20 12:31:21 +02:00 |
|
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|
46eec89774
|
remove unsafe and unused file_name field from trexio_hdf5_s
|
2021-07-20 12:08:18 +02:00 |
|
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|
ac28110696
|
add include guard to the trexio_private.h file
|
2021-07-20 12:06:44 +02:00 |
|
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|
88e777f68b
|
resolve complaint about undefined TREXIO_MAX_FILENAME_LENGTH and remove unused assert header
|
2021-07-20 11:36:23 +02:00 |
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e06e0b3745
|
commented brute force patch for re-defining constants in the target language
|
2021-07-20 10:42:25 +02:00 |
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9fa2bc2835
|
disable type casting in constant definitions to access them in the target language
required because SWIG cannot handle definitions with type casting
|
2021-07-20 10:39:05 +02:00 |
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d527561440
|
add test of basic I/O for Python
|
2021-07-19 17:59:26 +02:00 |
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79d374bdff
|
[WIP] Python interface generated by SWIG
|
2021-07-19 17:58:50 +02:00 |
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411334e2ee
|
Merge branch 'master' into unit-testing
|
2021-06-22 14:46:39 +02:00 |
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3bd730557c
|
remove H5LDget_dset_dims to be compatible with HDF5 v.1.8.21
|
2021-06-22 12:21:25 +02:00 |
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c8fd3ba045
|
remove redundant check of overwriting
|
2021-06-21 12:48:32 +02:00 |
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07d2945333
|
rename TREXIO_NUM_ALREADY_EXISTS return code
|
2021-06-21 12:47:39 +02:00 |
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ec0db01f0c
|
Documentation in dist
|
2021-06-18 12:04:03 +02:00 |
|
q-posev
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c9f639e0e8
|
fix compiler warning from MacOS
|
2021-06-17 20:20:46 +02:00 |
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1a54b7fcf6
|
fix compiler warning for const pointers
|
2021-06-15 12:04:30 +02:00 |
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ac45a937af
|
Merge branch 'master' into add-strings
|
2021-06-15 11:49:42 +02:00 |
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da188dbea0
|
add top-level read/write functions for single strings [fortran]
|
2021-06-15 11:26:03 +02:00 |
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b92a15cce7
|
add top-level read/write functions for string arrays [fortran]
|
2021-06-15 10:20:01 +02:00 |
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eadc2c63ac
|
fix leaking memory [front]
|
2021-06-14 16:27:08 +02:00 |
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5553e9110e
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add top-level read/write functions that accept arrays of strings directly
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2021-06-14 15:40:26 +02:00 |
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ae32a02652
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pass max_str_len parameter also to read group_str
|
2021-06-14 14:36:19 +02:00 |
|
