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72897e4b5d
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[WIP] read/write of sparse data in Python
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2021-12-23 18:27:24 +01:00 |
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c2376bf168
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Fixed bug in text back-end when reading empt attributes
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2021-12-23 18:21:17 +01:00 |
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q-posev
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31ccd27a0a
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fix warnings on MacOS
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2021-12-17 17:07:53 +01:00 |
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2639b76a6e
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optimize storage of indices depending on the size_max variable [TEXT]
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2021-12-17 15:32:03 +01:00 |
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daa5bdb3cc
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(inout) buffer size instead if (out) [Fortran]
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2021-12-17 13:33:27 +01:00 |
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314beb58c9
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refactoring done; moved common blocks into _hdf5_open_read_dset_sparse
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2021-12-17 13:32:35 +01:00 |
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1c49c81da8
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[WIP] refactoring; write_dset_sparse done
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2021-12-16 16:52:35 +01:00 |
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fafb155228
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return the number of read elements if read_sparse reached EOF
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2021-12-16 11:05:57 +01:00 |
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2e99a14b6e
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read dim variable of sparse dset to compress storage of indices in HDF5
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2021-12-14 18:03:51 +01:00 |
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a8b251d820
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write sparse values and compress int indices depending on the max num value
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2021-12-14 18:02:58 +01:00 |
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b90abcc307
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fix memory leak in the Fortran test
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2021-12-13 09:59:27 +01:00 |
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070ef06818
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better error handling for HDF5
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2021-12-10 16:49:31 +01:00 |
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1c16b75992
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adapt HDF5 back end to be generated for an arbitrary number of indices
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2021-12-10 16:02:38 +01:00 |
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9f5ee463e1
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only shift indices that have been read to the buffer (EOF case)
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2021-12-10 14:02:05 +01:00 |
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7afb53be49
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implement shift of sparse indices to be one-based in Fortran
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2021-12-10 11:34:37 +01:00 |
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e00f3b106e
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working HDF5 I/O for sparse indices
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2021-12-09 16:13:28 +01:00 |
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e774cb6852
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add read_size function to HDF5 back end
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2021-12-09 14:10:51 +01:00 |
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d001844c2f
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[WIP] working write_ for chunked extensible (sparse) datasets
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2021-12-08 17:26:55 +01:00 |
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e5bde10056
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alternative way to check for EOF with fgets while reading
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2021-12-03 19:23:01 +01:00 |
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ed3bde973e
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[WIP] more general templated variables for sparse data
+ renamed templated variables with std_dtype_in|out suffix into _format_scanf|printf for clarity
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2021-12-03 15:42:40 +01:00 |
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c520175cbe
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use size_max values provided by the read_size functions
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2021-12-03 11:48:51 +01:00 |
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d2c95cd306
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add functions to read the number of stored sparse elements
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2021-12-02 17:28:37 +01:00 |
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acdf982a94
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fixed string length for file name + comments
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2021-12-01 16:28:47 +01:00 |
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7afce779a8
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better error handling in TEXT back end
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2021-12-01 16:11:40 +01:00 |
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c30c3a532c
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add Fortran interface for sparse data
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2021-12-01 13:35:42 +01:00 |
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83c926fd6b
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replace offset_data arg with pointer arithmetics
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2021-12-01 09:56:31 +01:00 |
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d3ba8f3652
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[WIP] working generator for sparse functions
+ remove trailing whitespaces
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2021-11-30 16:30:36 +01:00 |
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c1e1176400
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[WIP] text back end
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2021-11-24 17:44:54 +01:00 |
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d44883f0ea
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add search bar
close #40
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2021-11-19 12:50:12 +01:00 |
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527417cd8f
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fix type conversion for 32-bit indices
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2021-11-18 14:33:18 +01:00 |
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72c355c7cc
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Top-level CMakeLists with subdirectories
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2021-11-17 14:00:35 +01:00 |
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954ee4216c
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add trexio_has_backend function to the C and Fortran APIs
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2021-11-02 11:05:27 +01:00 |
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7f3ee3cc18
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reset back end values and add TREXIO_BACK_END_MISSING error
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2021-11-02 10:32:00 +01:00 |
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5504bc0fe6
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wrap TREXIO_INVALID_BACK_END definition in preprocessor macro
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2021-11-01 13:22:46 +01:00 |
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d42dc7f449
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optional HDF5 compilation
via configure script and pre-processor macros
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2021-11-01 11:55:34 +01:00 |
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1812deb9dd
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Check return value of mkdtemp
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2021-10-14 10:53:15 +02:00 |
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5cf12131f1
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Fix text back end for read-only directories (make distcheck in qmckl)
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2021-10-13 17:43:15 +02:00 |
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d017306706
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Better error handling with open in text back end
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2021-10-13 16:13:24 +02:00 |
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954b26ccff
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Update README
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2021-10-13 14:24:54 +02:00 |
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fb9c95bd61
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add version attributes to the Fortran module
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2021-10-08 13:55:56 +02:00 |
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947a8a12f8
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Fix bug due to PACKAGE_VERSION definition in trexio.h
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2021-10-07 09:54:19 +02:00 |
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68284161d3
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downgrade numpy.i SWIG interface to numpy 1.17.3
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2021-09-30 17:22:50 +02:00 |
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2e2dac3982
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modify rc_open only if it is not a NULL pointer
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2021-09-24 12:23:59 +02:00 |
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67b00efa9c
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handle return error of trexio_open in the Python API
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2021-09-22 16:40:55 +02:00 |
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9457a826d2
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return error code from trexio_open [C, Fortran]
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2021-09-22 14:50:22 +02:00 |
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14472cda48
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better error handling in case of invalid dimensioning variable
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2021-09-22 11:33:27 +02:00 |
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389d265f7f
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fix cppcheck warnings regarding redundant size_dset_str checks
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2021-09-21 16:08:04 +02:00 |
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d1a9af4185
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remove blank spaces in front of pointers
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2021-09-21 15:54:11 +02:00 |
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788f7e666d
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read single numerical attributes based on _isSet bool flag
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2021-09-21 15:41:12 +02:00 |
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d5405e700c
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raise TREXIO_INVALID_ARG_2 also when writing zero as dimensioning variable
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2021-09-21 14:35:29 +02:00 |
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