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4c28a4cac8
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add type converters for numerical arrays in read/write Python functions
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2021-08-26 13:14:46 +03:00 |
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1dcd32ef7d
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add SWIG typemaps for safe API calls in single and double precision
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2021-08-25 13:31:17 +03:00 |
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ed7e3902e2
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add memory-safe functions in single or double precision
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2021-08-24 13:32:01 +03:00 |
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2911e91941
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make dim an optional argument in read_ functions
if dim is None - the function read all necessary dimensions from the TREXIO file
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2021-08-24 12:51:43 +03:00 |
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6f7c23aa11
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add missing annotations
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2021-08-21 13:13:55 +03:00 |
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4fe86ee980
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add Python docstrings for API functions
+ move definition of Fortran and Python back ends from Constant Prefixes to Back Ends section
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2021-08-21 12:47:36 +03:00 |
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5d5025ae1d
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get rid of _safe suffix and add dimension to read_dset_str functions
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2021-08-20 13:43:15 +03:00 |
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831973fc8e
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better python compilation
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2021-08-18 16:28:43 +03:00 |
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902147b45b
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better structure of the python directory
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2021-08-18 15:40:42 +03:00 |
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9cc552409f
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rename the front-end Python module
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2021-08-18 13:30:03 +03:00 |
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f0bccee32d
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single top-level import of pytrexio resolves bug with caching
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2021-08-18 13:28:37 +03:00 |
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0b223b9d6e
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return type cast of exit codes and back ends in C
add top-level string_of_error function in Python
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2021-08-14 12:27:11 +03:00 |
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721352cb89
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add missing support for reading single string attributes
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2021-08-11 16:01:36 +03:00 |
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209f4506c8
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update gitignore
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2021-08-11 16:01:04 +03:00 |
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2be1abd571
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add Python front end
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2021-08-11 15:59:58 +03:00 |
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ec7a39f6c2
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strict int types for DIM1 and arrays
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2021-08-06 16:24:11 +03:00 |
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808adc7cd8
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add typemaps and tests for numpy int arrays
+ some cleaning in the Python test and SWIG interface files
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2021-08-06 14:04:29 +03:00 |
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1388ddef80
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fix warnings produced during compilation of the Python extension module
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2021-08-06 12:06:42 +03:00 |
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d0c19e0ce0
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pytrexio build and pip install working
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2021-08-05 17:55:34 +03:00 |
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60c28c1f3b
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rename python test and add temporary TODO
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2021-08-04 14:13:23 +03:00 |
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9a28b8d4bc
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Revert "create python directory and add TODO objectives"
This reverts commit 6ce91a6669.
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2021-08-04 12:07:27 +03:00 |
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6ce91a6669
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create python directory and add TODO objectives
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2021-08-04 10:18:36 +03:00 |
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e0162d4570
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return double datasets as numpy arrays using numpy.i and safe API
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2021-07-28 15:59:29 +02:00 |
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ea0ea0ac38
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move from distutils to setuptools
sdist and install arguments of setup.py work!
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2021-07-28 15:57:42 +02:00 |
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f3dbfc7be2
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added License and install_requires in setup.py + cleaning
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2021-07-28 10:33:33 +02:00 |
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da5a990acc
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add memory-safe API for numerical datasets
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2021-07-28 10:19:00 +02:00 |
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9f4176a8b6
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resolve major compiler warnings produced by distutils
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2021-07-27 11:06:06 +02:00 |
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171cf1662b
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ignore __pycache__
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2021-07-26 19:28:56 +02:00 |
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9bbae8fd7c
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replace some integers with TREXIO-native constants
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2021-07-26 19:27:45 +02:00 |
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1f98604d58
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add pattern matching for arrays of strings + comments
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2021-07-26 18:49:26 +02:00 |
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12c2a3a014
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update gitignore
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2021-07-26 18:43:49 +02:00 |
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8c6289a8ba
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build Python module using pythonic distutils
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2021-07-26 18:43:15 +02:00 |
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4faee98092
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Merge branch 'master' into swig-python
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2021-07-23 16:38:06 +02:00 |
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578819afe7
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do not propagate the local user name from config.h to trexio.h
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2021-07-23 16:19:15 +02:00 |
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2f876ef7cd
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write TREXIO version in the file if not done yet
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2021-07-23 15:55:16 +02:00 |
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856412f06a
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propagate package version and user name to trexio.h
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2021-07-23 15:49:42 +02:00 |
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836603fd32
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do no wrap-up the code from back ends and private header
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2021-07-20 14:22:54 +02:00 |
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678f90f86a
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add a note on alternative way to re-define ill-defined constants
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2021-07-20 12:31:21 +02:00 |
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46eec89774
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remove unsafe and unused file_name field from trexio_hdf5_s
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2021-07-20 12:08:18 +02:00 |
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ac28110696
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add include guard to the trexio_private.h file
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2021-07-20 12:06:44 +02:00 |
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88e777f68b
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resolve complaint about undefined TREXIO_MAX_FILENAME_LENGTH and remove unused assert header
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2021-07-20 11:36:23 +02:00 |
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e06e0b3745
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commented brute force patch for re-defining constants in the target language
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2021-07-20 10:42:25 +02:00 |
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9fa2bc2835
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disable type casting in constant definitions to access them in the target language
required because SWIG cannot handle definitions with type casting
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2021-07-20 10:39:05 +02:00 |
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d527561440
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add test of basic I/O for Python
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2021-07-19 17:59:26 +02:00 |
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79d374bdff
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[WIP] Python interface generated by SWIG
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2021-07-19 17:58:50 +02:00 |
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411334e2ee
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Merge branch 'master' into unit-testing
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2021-06-22 14:46:39 +02:00 |
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3bd730557c
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remove H5LDget_dset_dims to be compatible with HDF5 v.1.8.21
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2021-06-22 12:21:25 +02:00 |
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c8fd3ba045
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remove redundant check of overwriting
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2021-06-21 12:48:32 +02:00 |
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07d2945333
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rename TREXIO_NUM_ALREADY_EXISTS return code
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2021-06-21 12:47:39 +02:00 |
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ec0db01f0c
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Documentation in dist
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2021-06-18 12:04:03 +02:00 |
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q-posev
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c9f639e0e8
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fix compiler warning from MacOS
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2021-06-17 20:20:46 +02:00 |
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1a54b7fcf6
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fix compiler warning for const pointers
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2021-06-15 12:04:30 +02:00 |
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ac45a937af
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Merge branch 'master' into add-strings
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2021-06-15 11:49:42 +02:00 |
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da188dbea0
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add top-level read/write functions for single strings [fortran]
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2021-06-15 11:26:03 +02:00 |
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b92a15cce7
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add top-level read/write functions for string arrays [fortran]
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2021-06-15 10:20:01 +02:00 |
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eadc2c63ac
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fix leaking memory [front]
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2021-06-14 16:27:08 +02:00 |
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5553e9110e
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add top-level read/write functions that accept arrays of strings directly
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2021-06-14 15:40:26 +02:00 |
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ae32a02652
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pass max_str_len parameter also to read group_str
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2021-06-14 14:36:19 +02:00 |
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be66feec16
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introduce _assert and _strarray2str helper subroutines for Fortran
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2021-06-14 11:55:17 +02:00 |
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535d7ed019
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enable operation on string attributes [text]
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2021-06-11 18:15:30 +02:00 |
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a40804be2e
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fix leaking memory and avoid allocation of empty blocks
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2021-06-11 14:46:24 +02:00 |
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13b8d24108
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[WIP] prepare new subloop triggers for the generator to properly read/free groups [text]
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2021-06-10 16:35:38 +02:00 |
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2b3e79054a
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[WIP] working pieces for read_dset_str [text]
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2021-06-10 16:34:16 +02:00 |
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bec752361c
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Index OK
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2021-06-10 01:49:43 +02:00 |
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1b504d92bf
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Merge branch 'master' into index
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2021-06-10 00:32:20 +02:00 |
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5abac3fec2
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[WIP] working write dset of strings, but with memory leak [text]
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2021-06-09 18:10:59 +02:00 |
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57b2b63902
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add C preprocessor directive for memory reclaim call
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2021-06-09 13:52:54 +02:00 |
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5c4782eb03
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fix Fortran interface
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2021-06-08 16:11:38 +02:00 |
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842b0efaa8
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use strncat instead of strcat
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2021-06-08 14:59:03 +02:00 |
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2e210bc212
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bring back the max_str_len argument for read_ functions [hdf5]
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2021-06-08 14:50:59 +02:00 |
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57a83d7cf2
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cleaning front end
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2021-06-08 14:50:17 +02:00 |
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36e85039d5
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make file names consistent with the C test
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2021-06-08 14:39:04 +02:00 |
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f2c5a3a51b
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add max_str_len argument to read/write a single string
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2021-06-08 10:45:43 +02:00 |
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231fe479e7
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inline with master branch
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2021-06-07 11:01:37 +02:00 |
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1ce1872916
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fix missing things after merge
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2021-06-04 18:42:35 +02:00 |
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ea9ffaea43
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Fix fortran tests
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2021-06-04 18:14:45 +02:00 |
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d57f2004ba
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Merge branch 'master' into add-strings
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2021-06-04 18:09:26 +02:00 |
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31bf17c66a
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Merge branch 'master' into evgeny
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2021-06-04 17:30:51 +02:00 |
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34478e366a
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resolve front end
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2021-06-04 17:28:56 +02:00 |
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1bfc8d0c6c
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fix typos
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2021-06-04 17:02:14 +02:00 |
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5b1cf03aaf
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[WIP] add has/read/write functions for string attributes [front,hdf5]
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2021-06-04 15:33:50 +02:00 |
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4549276e86
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Add trexio_set_one_based in fortran interface
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2021-06-04 15:00:13 +02:00 |
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77f2858548
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Add index in files
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2021-06-04 14:43:27 +02:00 |
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3ce9c57376
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safer strncpy in the front end
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2021-06-04 09:18:59 +02:00 |
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4fceb6624d
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fix error handling in write_group_dset
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2021-06-03 17:33:31 +02:00 |
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52e636f610
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fix error handling in read_group_dset
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2021-06-03 17:32:50 +02:00 |
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40e9aa9234
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introduce max_str_len parameter
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2021-06-03 16:13:11 +02:00 |
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ed1393f5de
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Merge branch 'automake' of github.com:TREX-CoE/trexio into automake
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2021-06-03 13:56:49 +02:00 |
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75af136d4f
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Moved sparse documentation in src/templates_front/templator_front.org
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2021-06-03 13:56:45 +02:00 |
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aa4251b943
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read_group_dset can operate on char* directly instead of char**
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2021-06-03 13:41:43 +02:00 |
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d2bc25ef03
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less allocations in the front end
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2021-06-03 13:39:02 +02:00 |
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40bfc581ee
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use newline char as a delimeter
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2021-06-03 10:26:19 +02:00 |
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5043d058bd
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Merge branch 'automake' of github.com:TREX-CoE/trexio into automake
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2021-06-03 09:57:57 +02:00 |
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a5ae1d239b
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Improve HDF5 in configure
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2021-06-03 01:25:20 +02:00 |
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693f8d3846
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fix file reopening for writing new variables
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2021-06-02 20:19:39 +02:00 |
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7a9d078859
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remove append mode
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2021-06-02 14:40:23 +02:00 |
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0b5136f14c
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add error handling for an attempt to overwrite something
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2021-06-02 14:23:58 +02:00 |
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8aa4721758
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Documentation
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2021-06-02 11:19:03 +02:00 |
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196224c63b
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use newline character as a delimeter for array of strings
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2021-06-01 18:12:15 +02:00 |
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0f444074c9
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better error handling [front]
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2021-06-01 16:45:13 +02:00 |
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