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mirror of https://github.com/TREX-CoE/trexio.git synced 2024-12-23 21:04:08 +01:00
Commit Graph

162 Commits

Author SHA1 Message Date
5043d058bd Merge branch 'automake' of github.com:TREX-CoE/trexio into automake 2021-06-03 09:57:57 +02:00
a5ae1d239b Improve HDF5 in configure 2021-06-03 01:25:20 +02:00
693f8d3846 fix file reopening for writing new variables 2021-06-02 20:19:39 +02:00
7a9d078859 remove append mode 2021-06-02 14:40:23 +02:00
0b5136f14c add error handling for an attempt to overwrite something 2021-06-02 14:23:58 +02:00
8aa4721758 Documentation 2021-06-02 11:19:03 +02:00
8b580fee4a Automake done. Need to improve tests 2021-05-28 13:36:39 +02:00
Evgeny Posenitskiy
29d927675e
Major refactoring of the generator script (#47)
* minor cleaning

* create functions for dictionary parsers in the external file

* remove files_exclude since post-processing does the job

* no need to have group_group_dset when propagatin dsets

* oneliner for paths to templates

* add dset_per_group dict

* add function to iteratively populate string based on triggers list

* added recursive replacer for numbers

* add recursive replaces for datasets

* add function for text groups  [iterative+recursive upd]

* do not define triggers in the master script

* transition to helper dictionaries

* cleaning

* comment main code blocks

* rearrange parameters

* add documentation strings to the functions

* minor cleaning and changes

* adapt build_trexio script

* add consisteny check for dimensioning variables
2021-05-26 19:11:46 +02:00
1d5c452071 Not bugs found with scan-build 2021-05-19 22:02:40 +02:00
0cc24bd21e error handling for trexio_text_deinit function 2021-05-19 15:03:15 +02:00
q-posev
f77a5af4e0 fix a typo 2021-05-18 12:07:37 +02:00
q-posev
047153b7c1 remove NULL pointer check for file_name in text 2021-05-18 11:43:05 +02:00
q-posev
d97c111284 fix the default precision of int datasets 2021-05-18 11:42:26 +02:00
692f45ed7f Correct rank in Fortran interface 2021-05-08 00:35:53 +02:00
cd8332a3e5 Added notes for sparse data structures 2021-05-07 00:02:12 +02:00
87bb6fcb6e Better error messages 2021-05-06 19:56:42 +02:00
7302f02b9c Improved error messages 2021-05-06 19:54:37 +02:00
181fe988f3 Fixed append problem 2021-05-06 19:40:27 +02:00
1cfa313d07 Error messages 2021-05-06 18:25:51 +02:00
q-posev
6e54e89d24 inttypes macros for rdm 2021-05-06 18:17:41 +02:00
20d551a70b include inttypes to fix portability issues in text back end 2021-05-06 18:08:28 +02:00
57655a8344 add error message for an attempt to overwrite dimensioning variables 2021-05-06 17:44:31 +02:00
db5544e810 Improved error codes 2021-05-06 15:09:50 +02:00
5e3c085fb7 discard patch for rdm 2021-05-06 09:38:28 +02:00
d3b35ae453 discard portability patch 2021-05-06 09:35:48 +02:00
q-posev
48d300674a portability patch for mac 2021-05-06 09:19:05 +02:00
c7349ef2ef datarootdir in src/Makefile.in 2021-05-05 13:46:40 +02:00
f272d27863 pkgconfig 2021-05-05 12:17:15 +02:00
f7dea1fd1c Fixed configure and install 2021-05-05 11:37:48 +02:00
9c2b240418 more portable HDF5 back end 2021-05-04 20:22:58 +02:00
5f4f94646f replace ULLONG with UINT64 2021-05-04 14:16:12 +02:00
daf3fdeb8b Fixed warning about strlen in strncpy 2021-05-04 10:03:32 +02:00
03f58a649e fixed make install and introduced uninstall targets 2021-05-03 15:15:49 +02:00
q-posev
a9c506dd15 fix distcheck rule 2021-04-30 20:10:06 +02:00
q-posev
be8386f770 rm libtrexio after creating a copy in the lib directory 2021-04-30 19:58:38 +02:00
4578fb1a2b adapt rules for new structure of the root directory 2021-04-30 19:04:43 +02:00
51660199c2 create tests directory 2021-04-30 15:50:41 +02:00
1e9581e2d2 move tests to the corresponding directory 2021-04-30 15:50:05 +02:00
caee3576b7 move generator to tools directory 2021-04-30 14:22:32 +02:00
203e9027a6 fix paths 2021-04-30 14:12:23 +02:00
faa936cc54 move build_trexio script to tools directory 2021-04-30 13:50:51 +02:00
Evgeny Posenitskiy
818d66d4d3
Autoconfig with optional HDF5 compilation (#42)
Makefile.in:
* recursive build;
* advanced make targets;
* major support for autoconf and minor for package managers.

configure.ac:
* optional HDF5 compilation [default: --with-hdf5];
* add -fPIC to CFLAGS if missing.
2021-04-28 15:30:18 +02:00
08a28c9ae4 Using pkg-config for hdf5 in Makefile 2021-04-26 22:46:43 +02:00
728d7bb3ad Fixed test : coord(3,12) 2021-04-20 01:34:11 +02:00
Evgeny Posenitskiy
8defdaa0c0
org-mode to html conversion for the documentation website (#41)
* working static html doc website generated from org-mode files

* fix build_doc script

* add gitignore

* add gitignore

* clean html garbage

* documented hdf5

* documented text back end
2021-04-09 16:45:44 +02:00
7e55933fea make consistent hierarchy in org-mode files 2021-04-08 11:40:50 +02:00
b656917323 consistent naming init/deinit instead init/finalize in back ends 2021-04-08 11:31:51 +02:00
b8c9bfa2df renamed build_trex script 2021-04-08 11:25:42 +02:00
Evgeny Posenitskiy
c43259176d
Add 32-bit funcs and document front end (#39)
* 32-bit functions
* adapt tests since the default write/read_num is now 32-bit
* minor cleaning in the generator
* add test for _32 functionality
* rm stdint-based types from test
* documentation
* rm trailing whitespaces in emacs
* change TREXIO_INVALID_BACK_END
* update gitignore
2021-04-07 17:37:04 +02:00
4e47e497d5 Table to generate error codes and string_of_error function 2021-04-01 22:48:04 +02:00