Fixed configure and install

.gitignore

@@ -1,4 +1,4 @@
-
+aclocal.m4
 Makefile
 src/Makefile
 auto-bugs

Makefile.in

@@ -7,6 +7,7 @@ tarname = @PACKAGE_TARNAME@
 distdir = $(tarname)-$(version)
 
 # Prefix-specific substitution variables
+datarootdir = @datarootdir@
 prefix      = @prefix@
 includedir  = @includedir@
 docdir      = @docdir@
@@ -29,7 +30,7 @@ LIBS      = @LIBS@
 LDFLAGS   = @LDFLAGS@
 INSTALL   = @INSTALL@
 
-.PHONY: FORCE all install uninstall clean clean-all check dist distcheck
+.PHONY: FORCE all install uninstall clean maintainer-clean check dist distcheck
 .POSIX:
 .SUFFIXES:
 
@@ -41,7 +42,7 @@ check:
 	cd tests && $(MAKE) $@
 
 
-clean clean-all:
+clean maintainer-clean:
 	cd src && $(MAKE) $@
 	cd tests && $(MAKE) $@
 
@@ -65,9 +66,10 @@ $(distdir): FORCE
 	mkdir -p $(distdir)/tests
 	mkdir -p $(distdir)/include
 	mkdir -p $(distdir)/lib
+	cp $(srcdir)/include/trexio.h $(distdir)/include
+	cp $(srcdir)/include/trexio_f.f90 $(distdir)/include
 	cp $(srcdir)/src/trexio*.c $(distdir)/src
 	cp $(srcdir)/src/trexio*.h $(distdir)/src
-	cp $(srcdir)/src/trexio*.f90 $(distdir)/src
 	cp $(srcdir)/src/Makefile.in $(distdir)/src
 	cp $(srcdir)/tests/test.c $(distdir)/tests
 	cp $(srcdir)/tests/test.f90 $(distdir)/tests

README.md

@@ -14,10 +14,11 @@ TREX library fo efficient I/O.
 
 1. Download the `trexio-<version>.tar.gz` file
 2. `gzip -cd trexio-<version>.tar.gz | tar xvf -`
-3. `cd trexio-<version>` 
+3. `cd trexio-<version>`
 4. `./configure`
-5. `make && sudo make install`
+5. `make`
 6. `make check`
+7. `sudo make install`
 
 
 **Note: on systems with no `sudo` rights access, one can replace `./configure` with `./configure prefix=${PWD}` in order to execite `make install/uninstall` commands without `sudo`. This will enable the installation in the root directory of the library.**
@@ -33,13 +34,14 @@ TREX library fo efficient I/O.
 ## Installation procedure from the GitHub repo clone (for developers):
 
 1. `git clone https://github.com/TREX-CoE/trexio.git`
-2. `cd trexio` 
+2. `cd trexio`
 3. `cd tools && ./build_trexio.sh && cd ..`
 4. `autoreconf`
 5. `automake --add-missing --copy`
 6. `./configure`
-7. `make && sudo make install`
+7. `make`
 8. `make check`
+9. `sudo make install`
 
 
 ## Tutorial

configure.ac

@@ -3,7 +3,19 @@
 
 AC_PREREQ([2.69])
 AC_INIT([TREXIO], [0.2], [https://github.com/TREX-CoE/trexio/issues])
-AC_CONFIG_SRCDIR([src/trexio_text.h])
+
+AC_CHECK_FILE(src/trexio_text.h, [have_src=yes], [have_src=no])
+
+if test "x${have_src}" = xno; then
+ AC_MSG_ERROR([
+	------------------------------------------
+	Please run:
+	 cd tools && ./build_trexio.sh && cd ..
+        before running ./configure
+	------------------------------------------])
+fi
+
+AC_CONFIG_SRCDIR([src/Makefile.in])
 AC_CONFIG_HEADERS([config.h])
 PKG_PROG_PKG_CONFIG()
 # Checks for programs.

src/.gitignore

@@ -1,19 +1,24 @@
 templates_front/*.c
 templates_front/*.h
 templates_front/*.f90
+templates_front/*.dump
 templates_front/populated/
 
 templates_hdf5/*.c
 templates_hdf5/*.h
+templates_hdf5/*.dump
 templates_hdf5/populated/
 
 templates_text/*.c
 templates_text/*.h
+templates_text/*.dump
 templates_text/populated/
 
 libtrexio.so
 *.o
 *.h
+*.dump
+*.cppcheck
 trexio.c
 trexio_text.c
 trexio_hdf5.c

src/Makefile.in

@@ -20,6 +20,15 @@ lispdir     = @lispdir@
 srcdir = @srcdir@
 VPATH  = @srcdir@
 
+libtrexio_so=libtrexio.so
+libtrexio=$(srcdir)/../lib/$(libtrexio_so)
+
+trexio_f_file=trexio_f.f90
+trexio_f=$(srcdir)/../include/$(trexio_f_file)
+
+trexio_h_file=trexio.h
+trexio_h=$(srcdir)/../include/$(trexio_h_file)
+
 # Tool-specific substitution variables
 CC        = @CC@
 CFLAGS    = @CFLAGS@
@@ -54,26 +63,26 @@ endif
 
 OBJECT_FILES= trexio.o trexio_text.o trexio_hdf5.o
 SOURCE_FILES= test.c trexio.c trexio_hdf5.c trexio_text.c
-HEADER_FILES= trexio.h trexio_text.h trexio_hdf5.h trexio_s.h
+HEADER_FILES= $(trexio_h) trexio_text.h trexio_hdf5.h trexio_s.h
 
 
-.PHONY: all fortran clean clean-all install
+.PHONY: all fortran clean maintainer-clean install
 .POSIX:
 .SUFFIXES:
 
 
-all: libtrexio.so fortran
+all: $(libtrexio) fortran
 
 
-libtrexio.so: $(OBJECT_FILES) $(HEADER_FILES) 
-	$(CC) -shared $(OBJECT_FILES) -o libtrexio.so
+$(libtrexio): $(OBJECT_FILES) $(HEADER_FILES) 
+	$(CC) -shared $(OBJECT_FILES) -o $(libtrexio)
 
 
 fortran: trexio_f.o
 
 
-trexio_f.o: libtrexio.so trexio_f.f90
-	$(FC) $(FCFLAGS) -c trexio_f.f90 -o trexio_f.o
+trexio_f.o: $(libtrexio) $(trexio_f)
+	$(FC) $(FCFLAGS) -c $(trexio_f)  -o trexio_f.o
 
 
 cppcheck: cppcheck.out
@@ -91,27 +100,27 @@ cppcheck.out: $(HEADER_FILES) $(SOURCE_FILES)
 # install should avoid build target due to possible conflict when prefix overriden
 install:
 	$(INSTALL) -d $(DESTDIR)$(libdir) $(DESTDIR)$(includedir)
-	cp libtrexio.so $(DESTDIR)$(libdir)
-	cp trexio*.h $(DESTDIR)$(includedir)
-	cp trexio_f.f90 $(DESTDIR)$(includedir)
+	cp $(libtrexio) $(DESTDIR)$(libdir)
+	cp $(trexio_h) $(DESTDIR)$(includedir)
+	cp $(trexio_f) $(DESTDIR)$(includedir)
 
 
 uninstall:
-	-$(RM) -- $(DESTDIR)$(libdir)/libtrexio.so
-	-$(RM) -- $(DESTDIR)$(includedir)/trexio*.h
-	-$(RM) -- $(DESTDIR)$(includedir)/trexio_f.f90
+	-$(RM) -- $(DESTDIR)$(libdir)/$(libtrexio_so)
+	-$(RM) -- $(DESTDIR)$(includedir)/$(trexio_h_file)
+	-$(RM) -- $(DESTDIR)$(includedir)/$(trexio_f_file)
 
 
 clean:
-	$(RM) -- *.o libtrexio.so trexio.mod 
+	$(RM) -- *.o $(libtrexio) trexio.mod 
 
 
-clean-all:
-	$(RM) -- *.c *.h *.o libtrexio.so trexio_f.f90 trexio.mod
+maintainer-clean:
+	$(RM) -- *.c *.h *.o $(libtrexio) $(trexio_f) trexio.mod
 
 
 %.o: %.c $(HEADER_FILES)
-	$(CC) $(CPPFLAGS) $(CFLAGS) -c $*.c -o $*.o
+	$(CC) -I$(srcdir)/../include $(CPPFLAGS) $(CFLAGS) -c $*.c -o $*.o
 
 
 Makefile: Makefile.in ../config.status

tests/Makefile.in

@@ -7,16 +7,6 @@ tarname = @PACKAGE_TARNAME@
 distdir = $(tarname)-$(version)
 
 # Prefix-specific substitution variables
-prefix      = @prefix@
-includedir  = @includedir@
-docdir      = @docdir@
-htmldir     = @htmldir@
-libdir      = @libdir@
-# Supplementary
-exec_prefix = @exec_prefix@
-libexecdir  = @libexecdir@
-lispdir     = @lispdir@
-# VPATH-specific substitution variables
 srcdir = @srcdir@
 VPATH  = @srcdir@
 
@@ -31,7 +21,7 @@ LDFLAGS   = @LDFLAGS@
 INSTALL   = @INSTALL@
 
 
-.PHONY: clean
+.PHONY: clean maintainer-clean check
 .POSIX:
 
 
@@ -43,15 +33,15 @@ check: test_c test_f
 
 
 test_c: test.c
-	$(CC) $(CPPFLAGS) -I$(DESTDIR)$(includedir) $(CFLAGS) -Wl,-rpath,$(DESTDIR)$(libdir) -L$(DESTDIR)$(libdir) test.c $(LDFLAGS) -ltrexio $(LIBS) -o test_c
+	$(CC) $(CPPFLAGS) -I$(srcdir)/../include $(CFLAGS) -Wl,-rpath,$(srcdir)/../lib -L$(srcdir)/../lib test.c $(LDFLAGS) -ltrexio $(LIBS) -o test_c
 
 
 test_f: trexio_f.f90 test.f90
-	$(FC) $(CPPFLAGS) $(FCFLAGS) -Wl,-rpath,$(DESTDIR)$(libdir) -L$(DESTDIR)$(libdir) trexio_f.f90 test.f90 $(LDFLAGS) -ltrexio $(LIBS) -o test_f
+	$(FC) $(CPPFLAGS) $(FCFLAGS) -Wl,-rpath,$(srcdir)/../lib -L$(srcdir)/../lib trexio_f.f90 test.f90 $(LDFLAGS) -ltrexio $(LIBS) -o test_f
 
 
 trexio_f.f90:
-	cp $(DESTDIR)$(includedir)/trexio_f.f90 .
+	cp $(srcdir)/../include/trexio_f.f90 .
 
 
 clean:
@@ -59,7 +49,7 @@ clean:
 	$(RM) -r -- trexio_test/ trexio_test_fort/
 
 
-clean-all: clean
+maintainer-clean: clean
 	$(RM) -- trexio_f.o
 
 

tools/build_trexio.sh

@@ -77,6 +77,7 @@ cd templates_front
 source build.sh
 cp trexio* ../
 cd ..
+mv trexio.h trexio_f.f90 ../include
 
 cd templates_text
 source build.sh