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4
README.html
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<head>
<!-- 2021-04-19 Mon 23:34 -->
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<meta http-equiv="Content-Type" content="text/html;charset=utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1" />
<title>TREXIO source code documentation</title>
@ -341,7 +341,7 @@ and bug reports should be submitted at
</div>
<div id="postamble" class="status">
<p class="author">Author: TREX-CoE</p>
<p class="date">Created: 2021-04-19 Mon 23:34</p>
<p class="date">Created: 2021-04-26 Mon 20:47</p>
<p class="validation"><a href="http://validator.w3.org/check?uri=referer">Validate</a></p>
</div>
</body>

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<head>
<!-- 2021-04-19 Mon 23:34 -->
<!-- 2021-04-26 Mon 20:47 -->
<meta http-equiv="Content-Type" content="text/html;charset=utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1" />
<title>TREXIO source code documentation</title>
@ -341,7 +341,7 @@ and bug reports should be submitted at
</div>
<div id="postamble" class="status">
<p class="author">Author: TREX-CoE</p>
<p class="date">Created: 2021-04-19 Mon 23:34</p>
<p class="date">Created: 2021-04-26 Mon 20:47</p>
<p class="validation"><a href="http://validator.w3.org/check?uri=referer">Validate</a></p>
</div>
</body>

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"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
<head>
<!-- 2021-04-19 Mon 23:34 -->
<!-- 2021-04-26 Mon 20:47 -->
<meta http-equiv="Content-Type" content="text/html;charset=utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1" />
<title>Front end API</title>
@ -311,45 +311,45 @@ for the JavaScript code in this tag.
<h2>Table of Contents</h2>
<div id="text-table-of-contents">
<ul>
<li><a href="#orgab16d13">1. Coding conventions</a>
<li><a href="#org1634d24">1. Coding conventions</a>
<ul>
<li><a href="#org901fe71">1.1. Memory allocation</a></li>
<li><a href="#org5c49b17">1.1. Memory allocation</a></li>
</ul>
</li>
<li><a href="#org725dad0">2. Front end</a>
<li><a href="#orgb63f357">2. Front end</a>
<ul>
<li><a href="#org35836e0">2.1. Error handling</a></li>
<li><a href="#org76eb564">2.2. Back ends</a></li>
<li><a href="#org459a155">2.3. Read/write behavior</a></li>
<li><a href="#org7dca4b2">2.4. TREXIO file type</a></li>
<li><a href="#org020eedb">2.5. Polymorphism of the file handle</a></li>
<li><a href="#org96e4f6c">2.6. File opening</a></li>
<li><a href="#org60d6a3e">2.7. File closing</a></li>
<li><a href="#orgdc00232">2.1. Error handling</a></li>
<li><a href="#orga6d5f6e">2.2. Back ends</a></li>
<li><a href="#org73ae5e0">2.3. Read/write behavior</a></li>
<li><a href="#org9033baf">2.4. TREXIO file type</a></li>
<li><a href="#orgfec417a">2.5. Polymorphism of the file handle</a></li>
<li><a href="#org273128a">2.6. File opening</a></li>
<li><a href="#orgc8bc570">2.7. File closing</a></li>
</ul>
</li>
<li><a href="#org104a869">3. Templates for front end</a>
<li><a href="#org16e4afb">3. Templates for front end</a>
<ul>
<li><a href="#org3c430e2">3.1. Templates for front end has/read/write a dimension</a>
<li><a href="#org51583e1">3.1. Templates for front end has/read/write a dimension</a>
<ul>
<li><a href="#org9d29044">3.1.1. C templates for front end</a></li>
<li><a href="#orgafa7981">3.1.2. Fortran templates for front end</a></li>
<li><a href="#org3b0f71e">3.1.1. C templates for front end</a></li>
<li><a href="#org7f34841">3.1.2. Fortran templates for front end</a></li>
</ul>
</li>
<li><a href="#org916b778">3.2. Templates for front end has/read/write a dataset</a>
<li><a href="#org7ea2576">3.2. Templates for front end has/read/write a dataset</a>
<ul>
<li><a href="#orgcf00cce">3.2.1. C templates for front end</a></li>
<li><a href="#org95c29cc">3.2.2. Fortran templates for front end</a></li>
<li><a href="#org487a8dc">3.2.1. C templates for front end</a></li>
<li><a href="#orgeef3c88">3.2.2. Fortran templates for front end</a></li>
</ul>
</li>
</ul>
</li>
<li><a href="#org2c30f19">4. Fortran helper/wrapper functions</a></li>
<li><a href="#org71764ae">4. Fortran helper/wrapper functions</a></li>
</ul>
</div>
</div>
<div id="outline-container-orgab16d13" class="outline-2">
<h2 id="orgab16d13"><span class="section-number-2">1</span> Coding conventions</h2>
<div id="outline-container-org1634d24" class="outline-2">
<h2 id="org1634d24"><span class="section-number-2">1</span> Coding conventions</h2>
<div class="outline-text-2" id="text-1">
<ul class="org-ul">
<li>integer types will be defined using types given in <code>stdint.h</code></li>
@ -364,8 +364,8 @@ for the JavaScript code in this tag.
</ul>
</div>
<div id="outline-container-org901fe71" class="outline-3">
<h3 id="org901fe71"><span class="section-number-3">1.1</span> Memory allocation</h3>
<div id="outline-container-org5c49b17" class="outline-3">
<h3 id="org5c49b17"><span class="section-number-3">1.1</span> Memory allocation</h3>
<div class="outline-text-3" id="text-1-1">
<p>
Memory allocation of structures can be facilitated by using the
@ -392,8 +392,8 @@ This can be facilitated by the use of the following macro:
</div>
</div>
<div id="outline-container-org725dad0" class="outline-2">
<h2 id="org725dad0"><span class="section-number-2">2</span> Front end</h2>
<div id="outline-container-orgb63f357" class="outline-2">
<h2 id="orgb63f357"><span class="section-number-2">2</span> Front end</h2>
<div class="outline-text-2" id="text-2">
<p>
All calls to TREXIO are thread-safe.
@ -401,10 +401,10 @@ TREXIO front end is modular, which simplifies impelementation of new back ends.
</p>
</div>
<div id="outline-container-org35836e0" class="outline-3">
<h3 id="org35836e0"><span class="section-number-3">2.1</span> Error handling</h3>
<div id="outline-container-orgdc00232" class="outline-3">
<h3 id="orgdc00232"><span class="section-number-3">2.1</span> Error handling</h3>
<div class="outline-text-3" id="text-2-1">
<table id="org3379a94" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
<table id="org99e4cee" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
<colgroup>
@ -605,8 +605,8 @@ The text strings are extracted from the previous table.
</div>
</div>
<div id="outline-container-org76eb564" class="outline-3">
<h3 id="org76eb564"><span class="section-number-3">2.2</span> Back ends</h3>
<div id="outline-container-orga6d5f6e" class="outline-3">
<h3 id="orga6d5f6e"><span class="section-number-3">2.2</span> Back ends</h3>
<div class="outline-text-3" id="text-2-2">
<p>
TREXIO has several back ends:
@ -636,8 +636,8 @@ lines that correspond to the <code>TREXIO_JSON</code> back end (not implemented
</div>
</div>
</div>
<div id="outline-container-org459a155" class="outline-3">
<h3 id="org459a155"><span class="section-number-3">2.3</span> Read/write behavior</h3>
<div id="outline-container-org73ae5e0" class="outline-3">
<h3 id="org73ae5e0"><span class="section-number-3">2.3</span> Read/write behavior</h3>
<div class="outline-text-3" id="text-2-3">
<p>
Every time a reading function is called, the data is read from the
@ -665,8 +665,8 @@ concurrent programs, the behavior is not specified.
</p>
</div>
</div>
<div id="outline-container-org7dca4b2" class="outline-3">
<h3 id="org7dca4b2"><span class="section-number-3">2.4</span> TREXIO file type</h3>
<div id="outline-container-org9033baf" class="outline-3">
<h3 id="org9033baf"><span class="section-number-3">2.4</span> TREXIO file type</h3>
<div class="outline-text-3" id="text-2-4">
<p>
<code>trexio_s</code> is the the main type for TREXIO files, visible to the users
@ -698,8 +698,8 @@ TREXIO files will have as a first argument the TREXIO file handle.
</div>
</div>
</div>
<div id="outline-container-org020eedb" class="outline-3">
<h3 id="org020eedb"><span class="section-number-3">2.5</span> Polymorphism of the file handle</h3>
<div id="outline-container-orgfec417a" class="outline-3">
<h3 id="orgfec417a"><span class="section-number-3">2.5</span> Polymorphism of the file handle</h3>
<div class="outline-text-3" id="text-2-5">
<p>
Polymorphism of the <code>trexio_t</code> type is handled by ensuring that the
@ -718,8 +718,8 @@ corresponding types for all back ends can be safely casted to
</div>
</div>
<div id="outline-container-org96e4f6c" class="outline-3">
<h3 id="org96e4f6c"><span class="section-number-3">2.6</span> File opening</h3>
<div id="outline-container-org273128a" class="outline-3">
<h3 id="org273128a"><span class="section-number-3">2.6</span> File opening</h3>
<div class="outline-text-3" id="text-2-6">
<p>
<code>trexio_open</code> creates a new TREXIO file or opens existing one.
@ -879,8 +879,8 @@ should tend to avoid renaming the <code>.txt</code> data files.
</div>
</div>
<div id="outline-container-org60d6a3e" class="outline-3">
<h3 id="org60d6a3e"><span class="section-number-3">2.7</span> File closing</h3>
<div id="outline-container-orgc8bc570" class="outline-3">
<h3 id="orgc8bc570"><span class="section-number-3">2.7</span> File closing</h3>
<div class="outline-text-3" id="text-2-7">
<p>
<code>trexio_close</code> closes an existing <code>trexio_t</code> file.
@ -985,8 +985,8 @@ output:
</div>
</div>
<div id="outline-container-org104a869" class="outline-2">
<h2 id="org104a869"><span class="section-number-2">3</span> Templates for front end</h2>
<div id="outline-container-org16e4afb" class="outline-2">
<h2 id="org16e4afb"><span class="section-number-2">3</span> Templates for front end</h2>
<div class="outline-text-2" id="text-3">
<p>
Consider the following block of <code>trex.json</code>:
@ -1147,8 +1147,8 @@ TREXIO supports I/O with single or double precision for integer and floating poi
</div>
<div id="outline-container-org3c430e2" class="outline-3">
<h3 id="org3c430e2"><span class="section-number-3">3.1</span> Templates for front end has/read/write a dimension</h3>
<div id="outline-container-org51583e1" class="outline-3">
<h3 id="org51583e1"><span class="section-number-3">3.1</span> Templates for front end has/read/write a dimension</h3>
<div class="outline-text-3" id="text-3-1">
<p>
This section concerns API calls related to dimensioning variables.
@ -1217,8 +1217,8 @@ This section concerns API calls related to dimensioning variables.
</table>
</div>
<div id="outline-container-org9d29044" class="outline-4">
<h4 id="org9d29044"><span class="section-number-4">3.1.1</span> C templates for front end</h4>
<div id="outline-container-org3b0f71e" class="outline-4">
<h4 id="org3b0f71e"><span class="section-number-4">3.1.1</span> C templates for front end</h4>
<div class="outline-text-4" id="text-3-1-1">
<p>
The <code>C</code> templates that correspond to each of the abovementioned functions can be found below.
@ -1407,8 +1407,8 @@ The basic (non-suffixed) API call on dimensioning variables deals with single pr
</div>
</div>
<div id="outline-container-orgafa7981" class="outline-4">
<h4 id="orgafa7981"><span class="section-number-4">3.1.2</span> Fortran templates for front end</h4>
<div id="outline-container-org7f34841" class="outline-4">
<h4 id="org7f34841"><span class="section-number-4">3.1.2</span> Fortran templates for front end</h4>
<div class="outline-text-4" id="text-3-1-2">
<p>
The <code>Fortran</code> templates that provide an access to the <code>C</code> API calls from Fortran.
@ -1495,8 +1495,8 @@ These templates are based on the use of <code>iso_c_binding</code>. Pointers hav
</div>
<div id="outline-container-org916b778" class="outline-3">
<h3 id="org916b778"><span class="section-number-3">3.2</span> Templates for front end has/read/write a dataset</h3>
<div id="outline-container-org7ea2576" class="outline-3">
<h3 id="org7ea2576"><span class="section-number-3">3.2</span> Templates for front end has/read/write a dataset</h3>
<div class="outline-text-3" id="text-3-2">
<p>
This section concerns API calls related to datasets.
@ -1565,8 +1565,8 @@ This section concerns API calls related to datasets.
</table>
</div>
<div id="outline-container-orgcf00cce" class="outline-4">
<h4 id="orgcf00cce"><span class="section-number-4">3.2.1</span> C templates for front end</h4>
<div id="outline-container-org487a8dc" class="outline-4">
<h4 id="org487a8dc"><span class="section-number-4">3.2.1</span> C templates for front end</h4>
<div class="outline-text-4" id="text-3-2-1">
<p>
The C templates that correspond to each of the abovementioned functions can be found below.
@ -1824,8 +1824,8 @@ The basic (non-suffixed) API call on datasets deals with double precision (see T
</div>
</div>
<div id="outline-container-org95c29cc" class="outline-4">
<h4 id="org95c29cc"><span class="section-number-4">3.2.2</span> Fortran templates for front end</h4>
<div id="outline-container-orgeef3c88" class="outline-4">
<h4 id="orgeef3c88"><span class="section-number-4">3.2.2</span> Fortran templates for front end</h4>
<div class="outline-text-4" id="text-3-2-2">
<p>
The <code>Fortran</code> templates that provide an access to the <code>C</code> API calls from <code>Fortran</code>.
@ -1912,8 +1912,8 @@ These templates are based on the use of <code>iso_c_binding</code>. Pointers hav
</div>
</div>
<div id="outline-container-org2c30f19" class="outline-2">
<h2 id="org2c30f19"><span class="section-number-2">4</span> Fortran helper/wrapper functions</h2>
<div id="outline-container-org71764ae" class="outline-2">
<h2 id="org71764ae"><span class="section-number-2">4</span> Fortran helper/wrapper functions</h2>
<div class="outline-text-2" id="text-4">
<p>
The function below adapts the original C-based <code>trexio_open</code> for Fortran.
@ -1942,7 +1942,7 @@ Note, that Fortran interface calls the main <code>TREXIO</code> API, which is wr
</div>
<div id="postamble" class="status">
<p class="author">Author: TREX-CoE</p>
<p class="date">Created: 2021-04-19 Mon 23:34</p>
<p class="date">Created: 2021-04-26 Mon 20:47</p>
<p class="validation"><a href="http://validator.w3.org/check?uri=referer">Validate</a></p>
</div>
</body>

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@ -3,7 +3,7 @@
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
<head>
<!-- 2021-04-19 Mon 23:34 -->
<!-- 2021-04-26 Mon 20:47 -->
<meta http-equiv="Content-Type" content="text/html;charset=utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1" />
<title>HDF5 back end</title>
@ -311,25 +311,25 @@ for the JavaScript code in this tag.
<h2>Table of Contents</h2>
<div id="text-table-of-contents">
<ul>
<li><a href="#org72ef407">1. HDF5 back end</a>
<li><a href="#orgf5610c8">1. HDF5 back end</a>
<ul>
<li><a href="#orgbd32fbb">1.1. Template for HDF5 definitions</a></li>
<li><a href="#org33f6ba6">1.2. Template for HDF5 structures</a></li>
<li><a href="#org044d55b">1.3. Template for HDF5 init/deinit</a></li>
<li><a href="#orgf52548e">1.4. Template for HDF5 has/read/write a number</a></li>
<li><a href="#org45ea3c3">1.5. Template for HDF5 has/read/write a dataset</a></li>
<li><a href="#org75abadd">1.1. Template for HDF5 definitions</a></li>
<li><a href="#org25443c8">1.2. Template for HDF5 structures</a></li>
<li><a href="#org9b75c9e">1.3. Template for HDF5 init/deinit</a></li>
<li><a href="#orge9acdda">1.4. Template for HDF5 has/read/write a number</a></li>
<li><a href="#orgdbb2ddb">1.5. Template for HDF5 has/read/write a dataset</a></li>
</ul>
</li>
</ul>
</div>
</div>
<div id="outline-container-org72ef407" class="outline-2">
<h2 id="org72ef407"><span class="section-number-2">1</span> HDF5 back end</h2>
<div id="outline-container-orgf5610c8" class="outline-2">
<h2 id="orgf5610c8"><span class="section-number-2">1</span> HDF5 back end</h2>
<div class="outline-text-2" id="text-1">
</div>
<div id="outline-container-orgbd32fbb" class="outline-3">
<h3 id="orgbd32fbb"><span class="section-number-3">1.1</span> Template for HDF5 definitions</h3>
<div id="outline-container-org75abadd" class="outline-3">
<h3 id="org75abadd"><span class="section-number-3">1.1</span> Template for HDF5 definitions</h3>
<div class="outline-text-3" id="text-1-1">
<div class="org-src-container">
<pre class="src src-c"><span style="color: #483d8b;">#define</span> $GROUP$_GROUP_NAME <span style="color: #8b2252;">"$group$"</span>
@ -340,8 +340,8 @@ for the JavaScript code in this tag.
</div>
</div>
<div id="outline-container-org33f6ba6" class="outline-3">
<h3 id="org33f6ba6"><span class="section-number-3">1.2</span> Template for HDF5 structures</h3>
<div id="outline-container-org25443c8" class="outline-3">
<h3 id="org25443c8"><span class="section-number-3">1.2</span> Template for HDF5 structures</h3>
<div class="outline-text-3" id="text-1-2">
<div class="org-src-container">
<pre class="src src-c"><span style="color: #a020f0;">typedef</span> <span style="color: #a020f0;">struct</span> <span style="color: #228b22;">trexio_hdf5_s</span> {
@ -356,8 +356,8 @@ for the JavaScript code in this tag.
</div>
<div id="outline-container-org044d55b" class="outline-3">
<h3 id="org044d55b"><span class="section-number-3">1.3</span> Template for HDF5 init/deinit</h3>
<div id="outline-container-org9b75c9e" class="outline-3">
<h3 id="org9b75c9e"><span class="section-number-3">1.3</span> Template for HDF5 init/deinit</h3>
<div class="outline-text-3" id="text-1-3">
<div class="org-src-container">
<pre class="src src-c"><span style="color: #228b22;">trexio_exit_code</span>
@ -440,8 +440,8 @@ for the JavaScript code in this tag.
</div>
</div>
<div id="outline-container-orgf52548e" class="outline-3">
<h3 id="orgf52548e"><span class="section-number-3">1.4</span> Template for HDF5 has/read/write a number</h3>
<div id="outline-container-orge9acdda" class="outline-3">
<h3 id="orge9acdda"><span class="section-number-3">1.4</span> Template for HDF5 has/read/write a number</h3>
<div class="outline-text-3" id="text-1-4">
<div class="org-src-container">
<pre class="src src-c"><span style="color: #228b22;">trexio_exit_code</span>
@ -564,8 +564,8 @@ for the JavaScript code in this tag.
</div>
</div>
<div id="outline-container-org45ea3c3" class="outline-3">
<h3 id="org45ea3c3"><span class="section-number-3">1.5</span> Template for HDF5 has/read/write a dataset</h3>
<div id="outline-container-orgdbb2ddb" class="outline-3">
<h3 id="orgdbb2ddb"><span class="section-number-3">1.5</span> Template for HDF5 has/read/write a dataset</h3>
<div class="outline-text-3" id="text-1-5">
<div class="org-src-container">
<pre class="src src-c"><span style="color: #228b22;">trexio_exit_code</span>
@ -696,7 +696,7 @@ for the JavaScript code in this tag.
</div>
<div id="postamble" class="status">
<p class="author">Author: TREX-CoE</p>
<p class="date">Created: 2021-04-19 Mon 23:34</p>
<p class="date">Created: 2021-04-26 Mon 20:47</p>
<p class="validation"><a href="http://validator.w3.org/check?uri=referer">Validate</a></p>
</div>
</body>

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<title>TEXT back end</title>
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<h2>Table of Contents</h2>
<div id="text-table-of-contents">
<ul>
<li><a href="#org959d128">1. TEXT back end</a>
<li><a href="#org72ef86d">1. TEXT back end</a>
<ul>
<li><a href="#orga67a2ac">1.1. Template for group-related structures in text back end</a></li>
<li><a href="#orgcd8e48c">1.2. Template for general structure in text back end</a></li>
<li><a href="#org72d45ef">1.3. Initialize function (constant part)</a></li>
<li><a href="#orgf234c74">1.4. Deinitialize function (templated part)</a></li>
<li><a href="#orge29671b">1.5. Template for text read struct</a></li>
<li><a href="#orgb73f270">1.6. Template for text flush struct</a></li>
<li><a href="#org17cd7ed">1.7. Template for text free memory</a></li>
<li><a href="#org9854dfc">1.8. Template for has/read/write the <code>$group_num$</code> attribute</a></li>
<li><a href="#org1e1d7f3">1.9. Template for has/read/write the <code>$group_dset$</code> dataset</a></li>
<li><a href="#orgd193d2a">1.10. RDM struct (hard-coded)</a>
<li><a href="#org7ac4105">1.1. Template for group-related structures in text back end</a></li>
<li><a href="#orgad2693e">1.2. Template for general structure in text back end</a></li>
<li><a href="#org67028fc">1.3. Initialize function (constant part)</a></li>
<li><a href="#org03e99a4">1.4. Deinitialize function (templated part)</a></li>
<li><a href="#org966c771">1.5. Template for text read struct</a></li>
<li><a href="#org6baee96">1.6. Template for text flush struct</a></li>
<li><a href="#org9e35658">1.7. Template for text free memory</a></li>
<li><a href="#org11f1e58">1.8. Template for has/read/write the <code>$group_num$</code> attribute</a></li>
<li><a href="#orge114c88">1.9. Template for has/read/write the <code>$group_dset$</code> dataset</a></li>
<li><a href="#org4055399">1.10. RDM struct (hard-coded)</a>
<ul>
<li><a href="#org8c5c7c8">1.10.1. Read the complete struct</a></li>
<li><a href="#org13eac7f">1.10.2. Flush the complete struct</a></li>
<li><a href="#org35d2bab">1.10.3. Free memory</a></li>
<li><a href="#orgb1993f8">1.10.4. Read/Write the one<sub>e</sub> attribute</a></li>
<li><a href="#orgd000d38">1.10.5. Read/Write the two<sub>e</sub> attribute</a></li>
<li><a href="#orgadb91c5">1.10.1. Read the complete struct</a></li>
<li><a href="#org70249b9">1.10.2. Flush the complete struct</a></li>
<li><a href="#orge6cc922">1.10.3. Free memory</a></li>
<li><a href="#org31cd815">1.10.4. Read/Write the one<sub>e</sub> attribute</a></li>
<li><a href="#org57fee2d">1.10.5. Read/Write the two<sub>e</sub> attribute</a></li>
</ul>
</li>
</ul>
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</div>
</div>
<div id="outline-container-org959d128" class="outline-2">
<h2 id="org959d128"><span class="section-number-2">1</span> TEXT back end</h2>
<div id="outline-container-org72ef86d" class="outline-2">
<h2 id="org72ef86d"><span class="section-number-2">1</span> TEXT back end</h2>
<div class="outline-text-2" id="text-1">
<p>
The "file" produced by the text back end is a directory with one
@ -359,8 +359,8 @@ The file is written when closed, or when the flush function is called.
</p>
</div>
<div id="outline-container-orga67a2ac" class="outline-3">
<h3 id="orga67a2ac"><span class="section-number-3">1.1</span> Template for group-related structures in text back end</h3>
<div id="outline-container-org7ac4105" class="outline-3">
<h3 id="org7ac4105"><span class="section-number-3">1.1</span> Template for group-related structures in text back end</h3>
<div class="outline-text-3" id="text-1-1">
<div class="org-src-container">
<pre class="src src-c"><span style="color: #a020f0;">typedef</span> <span style="color: #a020f0;">struct</span> $group$_s {
@ -376,8 +376,8 @@ The file is written when closed, or when the flush function is called.
</div>
</div>
<div id="outline-container-orgcd8e48c" class="outline-3">
<h3 id="orgcd8e48c"><span class="section-number-3">1.2</span> Template for general structure in text back end</h3>
<div id="outline-container-orgad2693e" class="outline-3">
<h3 id="orgad2693e"><span class="section-number-3">1.2</span> Template for general structure in text back end</h3>
<div class="outline-text-3" id="text-1-2">
<div class="org-src-container">
<pre class="src src-c"><span style="color: #a020f0;">typedef</span> <span style="color: #a020f0;">struct</span> <span style="color: #228b22;">rdm_s</span> {
@ -403,8 +403,8 @@ The file is written when closed, or when the flush function is called.
</div>
</div>
<div id="outline-container-org72d45ef" class="outline-3">
<h3 id="org72d45ef"><span class="section-number-3">1.3</span> Initialize function (constant part)</h3>
<div id="outline-container-org67028fc" class="outline-3">
<h3 id="org67028fc"><span class="section-number-3">1.3</span> Initialize function (constant part)</h3>
<div class="outline-text-3" id="text-1-3">
<div class="org-src-container">
<pre class="src src-c"><span style="color: #228b22;">trexio_exit_code</span>
@ -507,8 +507,8 @@ The file is written when closed, or when the flush function is called.
</div>
</div>
<div id="outline-container-orgf234c74" class="outline-3">
<h3 id="orgf234c74"><span class="section-number-3">1.4</span> Deinitialize function (templated part)</h3>
<div id="outline-container-org03e99a4" class="outline-3">
<h3 id="org03e99a4"><span class="section-number-3">1.4</span> Deinitialize function (templated part)</h3>
<div class="outline-text-3" id="text-1-4">
<div class="org-src-container">
<pre class="src src-c"><span style="color: #228b22;">trexio_exit_code</span>
@ -532,8 +532,8 @@ The file is written when closed, or when the flush function is called.
</div>
</div>
<div id="outline-container-orge29671b" class="outline-3">
<h3 id="orge29671b"><span class="section-number-3">1.5</span> Template for text read struct</h3>
<div id="outline-container-org966c771" class="outline-3">
<h3 id="org966c771"><span class="section-number-3">1.5</span> Template for text read struct</h3>
<div class="outline-text-3" id="text-1-5">
<div class="org-src-container">
<pre class="src src-c">$group$_t*
@ -724,8 +724,8 @@ trexio_text_read_$group$ (<span style="color: #228b22;">trexio_text_t</span>* <s
</div>
</div>
<div id="outline-container-orgb73f270" class="outline-3">
<h3 id="orgb73f270"><span class="section-number-3">1.6</span> Template for text flush struct</h3>
<div id="outline-container-org6baee96" class="outline-3">
<h3 id="org6baee96"><span class="section-number-3">1.6</span> Template for text flush struct</h3>
<div class="outline-text-3" id="text-1-6">
<div class="org-src-container">
<pre class="src src-c"><span style="color: #228b22;">trexio_exit_code</span>
@ -783,8 +783,8 @@ trexio_text_read_$group$ (<span style="color: #228b22;">trexio_text_t</span>* <s
</div>
</div>
<div id="outline-container-org17cd7ed" class="outline-3">
<h3 id="org17cd7ed"><span class="section-number-3">1.7</span> Template for text free memory</h3>
<div id="outline-container-org9e35658" class="outline-3">
<h3 id="org9e35658"><span class="section-number-3">1.7</span> Template for text free memory</h3>
<div class="outline-text-3" id="text-1-7">
<p>
Memory is allocated when reading. The following function frees memory.
@ -825,8 +825,8 @@ Memory is allocated when reading. The following function frees memory.
</div>
</div>
<div id="outline-container-org9854dfc" class="outline-3">
<h3 id="org9854dfc"><span class="section-number-3">1.8</span> Template for has/read/write the <code>$group_num$</code> attribute</h3>
<div id="outline-container-org11f1e58" class="outline-3">
<h3 id="org11f1e58"><span class="section-number-3">1.8</span> Template for has/read/write the <code>$group_num$</code> attribute</h3>
<div class="outline-text-3" id="text-1-8">
<div class="org-src-container">
<pre class="src src-c"><span style="color: #228b22;">trexio_exit_code</span>
@ -888,8 +888,8 @@ Memory is allocated when reading. The following function frees memory.
</div>
</div>
<div id="outline-container-org1e1d7f3" class="outline-3">
<h3 id="org1e1d7f3"><span class="section-number-3">1.9</span> Template for has/read/write the <code>$group_dset$</code> dataset</h3>
<div id="outline-container-orge114c88" class="outline-3">
<h3 id="orge114c88"><span class="section-number-3">1.9</span> Template for has/read/write the <code>$group_dset$</code> dataset</h3>
<div class="outline-text-3" id="text-1-9">
<p>
The <code>group_dset</code> array is assumed allocated with the appropriate size.
@ -986,12 +986,12 @@ The <code>group_dset</code> array is assumed allocated with the appropriate size
</div>
</div>
<div id="outline-container-orgd193d2a" class="outline-3">
<h3 id="orgd193d2a"><span class="section-number-3">1.10</span> RDM struct (hard-coded)</h3>
<div id="outline-container-org4055399" class="outline-3">
<h3 id="org4055399"><span class="section-number-3">1.10</span> RDM struct (hard-coded)</h3>
<div class="outline-text-3" id="text-1-10">
</div>
<div id="outline-container-org8c5c7c8" class="outline-4">
<h4 id="org8c5c7c8"><span class="section-number-4">1.10.1</span> Read the complete struct</h4>
<div id="outline-container-orgadb91c5" class="outline-4">
<h4 id="orgadb91c5"><span class="section-number-4">1.10.1</span> Read the complete struct</h4>
<div class="outline-text-4" id="text-1-10-1">
<div class="org-src-container">
<pre class="src src-c"><span style="color: #228b22;">rdm_t</span>* <span style="color: #0000ff;">trexio_text_read_rdm</span>(<span style="color: #228b22;">trexio_text_t</span>* <span style="color: #a020f0;">const</span> <span style="color: #a0522d;">file</span>);
@ -1085,8 +1085,8 @@ The <code>group_dset</code> array is assumed allocated with the appropriate size
</div>
</div>
<div id="outline-container-org13eac7f" class="outline-4">
<h4 id="org13eac7f"><span class="section-number-4">1.10.2</span> Flush the complete struct</h4>
<div id="outline-container-org70249b9" class="outline-4">
<h4 id="org70249b9"><span class="section-number-4">1.10.2</span> Flush the complete struct</h4>
<div class="outline-text-4" id="text-1-10-2">
<div class="org-src-container">
<pre class="src src-c"><span style="color: #228b22;">trexio_exit_code</span> <span style="color: #0000ff;">trexio_text_flush_rdm</span>(<span style="color: #228b22;">trexio_text_t</span>* <span style="color: #a020f0;">const</span> <span style="color: #a0522d;">file</span>);
@ -1129,8 +1129,8 @@ The <code>group_dset</code> array is assumed allocated with the appropriate size
</div>
</div>
<div id="outline-container-org35d2bab" class="outline-4">
<h4 id="org35d2bab"><span class="section-number-4">1.10.3</span> Free memory</h4>
<div id="outline-container-orge6cc922" class="outline-4">
<h4 id="orge6cc922"><span class="section-number-4">1.10.3</span> Free memory</h4>
<div class="outline-text-4" id="text-1-10-3">
<p>
Memory is allocated when reading. The followig function frees memory.
@ -1175,8 +1175,8 @@ Memory is allocated when reading. The followig function frees memory.
</div>
</div>
<div id="outline-container-orgb1993f8" class="outline-4">
<h4 id="orgb1993f8"><span class="section-number-4">1.10.4</span> Read/Write the one<sub>e</sub> attribute</h4>
<div id="outline-container-org31cd815" class="outline-4">
<h4 id="org31cd815"><span class="section-number-4">1.10.4</span> Read/Write the one<sub>e</sub> attribute</h4>
<div class="outline-text-4" id="text-1-10-4">
<p>
The <code>one_e</code> array is assumed allocated with the appropriate size.
@ -1242,8 +1242,8 @@ The <code>one_e</code> array is assumed allocated with the appropriate size.
</div>
</div>
<div id="outline-container-orgd000d38" class="outline-4">
<h4 id="orgd000d38"><span class="section-number-4">1.10.5</span> Read/Write the two<sub>e</sub> attribute</h4>
<div id="outline-container-org57fee2d" class="outline-4">
<h4 id="org57fee2d"><span class="section-number-4">1.10.5</span> Read/Write the two<sub>e</sub> attribute</h4>
<div class="outline-text-4" id="text-1-10-5">
<p>
<code>two_e</code> is a sparse data structure, which can be too large to fit
@ -1351,7 +1351,7 @@ file for each sparse float structure.
</div>
<div id="postamble" class="status">
<p class="author">Author: TREX-CoE</p>
<p class="date">Created: 2021-04-19 Mon 23:34</p>
<p class="date">Created: 2021-04-26 Mon 20:47</p>
<p class="validation"><a href="http://validator.w3.org/check?uri=referer">Validate</a></p>
</div>
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