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https://github.com/TREX-CoE/trexio.git
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Format strings
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f1e02350ac
commit
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@ -281,6 +281,7 @@ $group$_t* trexio_text_read_$group$(trexio_text_t* file) {
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size_t sz = ftell(f);
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size_t sz = ftell(f);
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fseek(f, 0L, SEEK_SET);
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fseek(f, 0L, SEEK_SET);
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sz = (sz < 1024) ? (1024) : (sz);
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char* buffer = CALLOC(sz, char);
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char* buffer = CALLOC(sz, char);
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if (buffer == NULL) {
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if (buffer == NULL) {
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FREE(file_name);
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FREE(file_name);
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@ -294,7 +295,7 @@ $group$_t* trexio_text_read_$group$(trexio_text_t* file) {
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// START REPEAT GROUP_DSET
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// START REPEAT GROUP_DSET
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rc = fscanf(f, "%s", buffer);
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rc = fscanf(f, "%1023s", buffer);
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if ((rc != 1) || (strcmp(buffer, "rank_$group_dset$") != 0)) {
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if ((rc != 1) || (strcmp(buffer, "rank_$group_dset$") != 0)) {
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FREE(buffer);
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FREE(buffer);
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FREE(file_name);
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FREE(file_name);
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@ -312,14 +313,15 @@ $group$_t* trexio_text_read_$group$(trexio_text_t* file) {
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return NULL;
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return NULL;
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}
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}
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// workaround for the case of missing blocks in the file
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/* workaround for the case of missing blocks in the file */
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uint64_t size_$group_dset$ = 0;
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uint64_t size_$group_dset$ = 0;
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if ($group$->rank_$group_dset$ != 0) size_$group_dset$ = 1;
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if ($group$->rank_$group_dset$ != 0) size_$group_dset$ = 1;
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for (unsigned int i=0; i<$group$->rank_$group_dset$; ++i){
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for (unsigned int i=0; i<$group$->rank_$group_dset$; ++i){
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unsigned int j=-1;
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unsigned int j=0;
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rc = fscanf(f, "%s %u", buffer, &j);
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rc = fscanf(f, "%1023s %u", buffer, &j);
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if ((rc != 2) || (strcmp(buffer, "dims_$group_dset$") != 0) || (j!=i)) {
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if ((rc != 2) || (strcmp(buffer, "dims_$group_dset$") != 0) || (j!=i)) {
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FREE(buffer);
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FREE(buffer);
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FREE(file_name);
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FREE(file_name);
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@ -346,7 +348,7 @@ $group$_t* trexio_text_read_$group$(trexio_text_t* file) {
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// START REPEAT GROUP_NUM
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// START REPEAT GROUP_NUM
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/* Read data */
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/* Read data */
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rc = fscanf(f, "%s", buffer);
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rc = fscanf(f, "%1023s", buffer);
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assert(!((rc != 1) || (strcmp(buffer, "$group_num$") != 0)));
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assert(!((rc != 1) || (strcmp(buffer, "$group_num$") != 0)));
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if ((rc != 1) || (strcmp(buffer, "$group_num$") != 0)) {
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if ((rc != 1) || (strcmp(buffer, "$group_num$") != 0)) {
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FREE(buffer);
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FREE(buffer);
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@ -381,7 +383,7 @@ $group$_t* trexio_text_read_$group$(trexio_text_t* file) {
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return NULL;
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return NULL;
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}
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}
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rc = fscanf(f, "%s", buffer);
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rc = fscanf(f, "%1023s", buffer);
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assert(!((rc != 1) || (strcmp(buffer, "$group_dset$") != 0)));
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assert(!((rc != 1) || (strcmp(buffer, "$group_dset$") != 0)));
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if ((rc != 1) || (strcmp(buffer, "$group_dset$") != 0)) {
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if ((rc != 1) || (strcmp(buffer, "$group_dset$") != 0)) {
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FREE(buffer);
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FREE(buffer);
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@ -454,7 +456,7 @@ trexio_exit_code trexio_text_flush_$group$(const trexio_text_t* file) {
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FILE* f = $group$->file;
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FILE* f = $group$->file;
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assert (f != NULL);
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assert (f != NULL);
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rewind(f);
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fseek(f, 0L, SEEK_SET);
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/* Write the dimensioning variables */
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/* Write the dimensioning variables */
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@ -684,11 +686,12 @@ rdm_t* trexio_text_read_rdm(trexio_text_t* file) {
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fseek(f, 0L, SEEK_END);
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fseek(f, 0L, SEEK_END);
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size_t sz = ftell(f);
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size_t sz = ftell(f);
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fseek(f, 0L, SEEK_SET);
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fseek(f, 0L, SEEK_SET);
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sz = (sz < 1024) ? (1024) : (sz);
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char* buffer = CALLOC(sz, char);
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char* buffer = CALLOC(sz, char);
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/* Read the dimensioning variables */
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/* Read the dimensioning variables */
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int rc;
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int rc;
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rc = fscanf(f, "%s", buffer);
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rc = fscanf(f, "%1023s", buffer);
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assert (rc == 1);
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assert (rc == 1);
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assert (strcmp(buffer, "dim_one_e") == 0);
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assert (strcmp(buffer, "dim_one_e") == 0);
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@ -700,7 +703,7 @@ rdm_t* trexio_text_read_rdm(trexio_text_t* file) {
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assert (rdm->one_e != NULL);
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assert (rdm->one_e != NULL);
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/* Read one_e */
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/* Read one_e */
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rc = fscanf(f, "%s", buffer);
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rc = fscanf(f, "%1023s", buffer);
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assert (rc == 1);
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assert (rc == 1);
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assert (strcmp(buffer, "one_e") == 0);
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assert (strcmp(buffer, "one_e") == 0);
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@ -710,11 +713,11 @@ rdm_t* trexio_text_read_rdm(trexio_text_t* file) {
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}
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}
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/* Read two_e */
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/* Read two_e */
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rc = fscanf(f, "%s", buffer);
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rc = fscanf(f, "%1023s", buffer);
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assert (rc == 1);
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assert (rc == 1);
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assert (strcmp(buffer, "two_e_file_name") == 0);
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assert (strcmp(buffer, "two_e_file_name") == 0);
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rc = fscanf(f, "%s", buffer);
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rc = fscanf(f, "%1023s", buffer);
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assert (rc == 1);
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assert (rc == 1);
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size_t str_size = strlen(buffer);
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size_t str_size = strlen(buffer);
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rdm->two_e_file_name = CALLOC(str_size,char);
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rdm->two_e_file_name = CALLOC(str_size,char);
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@ -754,7 +757,7 @@ trexio_exit_code trexio_text_flush_rdm(const trexio_text_t* file) {
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FILE* f = rdm->file;
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FILE* f = rdm->file;
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assert (f != NULL);
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assert (f != NULL);
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rewind(f);
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fseek(f, 0L, SEEK_SET);
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/* Write the dimensioning variables */
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/* Write the dimensioning variables */
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fprintf(f, "num %lu\n", rdm->dim_one_e);
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fprintf(f, "num %lu\n", rdm->dim_one_e);
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@ -925,7 +928,7 @@ trexio_exit_code trexio_text_buffered_write_rdm_two_e(const trexio_t* file, cons
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int rc;
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int rc;
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for (uint64_t i=0 ; i<size ; ++i) {
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for (uint64_t i=0 ; i<size ; ++i) {
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rc = fprintf(f, "%9lu %9lu %9lu %9lu %24le\n",
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rc = fprintf(f, "%9ld %9ld %9ld %9ld %24le\n",
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index[4*i],
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index[4*i],
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index[4*i+1],
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index[4*i+1],
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index[4*i+2],
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index[4*i+2],
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