diff --git a/README.html b/README.html index 07dc68a..aebf5b6 100644 --- a/README.html +++ b/README.html @@ -3,7 +3,7 @@ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"> - + TREXIO source code documentation @@ -341,7 +341,7 @@ and bug reports should be submitted at

Author: TREX-CoE

-

Created: 2021-06-16 Wed 12:05

+

Created: 2021-06-17 Thu 18:22

Validate

diff --git a/index.html b/index.html index 07dc68a..aebf5b6 100644 --- a/index.html +++ b/index.html @@ -3,7 +3,7 @@ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"> - + TREXIO source code documentation @@ -341,7 +341,7 @@ and bug reports should be submitted at

Author: TREX-CoE

-

Created: 2021-06-16 Wed 12:05

+

Created: 2021-06-17 Thu 18:22

Validate

diff --git a/templator_front.html b/templator_front.html index e5104d4..a9a73fe 100644 --- a/templator_front.html +++ b/templator_front.html @@ -3,7 +3,7 @@ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"> - + Front end API @@ -333,61 +333,61 @@ for the JavaScript code in this tag.

Table of Contents

-
-

1 Coding conventions

+
+

1 Coding conventions

  • integer types will be defined using types given in stdint.h
    • @@ -402,8 +402,8 @@ for the JavaScript code in this tag.
-
-

1.1 Memory allocation

+
+

1.1 Memory allocation

Memory allocation of structures can be facilitated by using the @@ -438,8 +438,8 @@ The maximum string size for the filenames is 4096 characters.

-
-

2 Front end

+
+

2 Front end

All calls to TREXIO are thread-safe. @@ -447,10 +447,10 @@ TREXIO front end is modular, which simplifies implementation of new back ends.

-
-

2.1 Error handling

+
+

2.1 Error handling

- +
@@ -750,8 +750,8 @@ The text strings are extracted from the previous table. -
-

2.2 Back ends

+
+

2.2 Back ends

TREXIO has several back ends: @@ -783,8 +783,8 @@ lines that correspond to the TREXIO_JSON back end (not implemented

-
-

2.3 Read/write behavior

+
+

2.3 Read/write behavior

Every time a reading function is called, the data is read from the @@ -812,8 +812,8 @@ concurrent programs, the behavior is not specified.

-
-

2.4 TREXIO file type

+
+

2.4 TREXIO file type

trexio_s is the the main type for TREXIO files, visible to the users @@ -846,8 +846,8 @@ TREXIO files will have as a first argument the TREXIO file handle.

-
-

2.5 Polymorphism of the file handle

+
+

2.5 Polymorphism of the file handle

Polymorphism of the trexio_t type is handled by ensuring that the @@ -866,8 +866,8 @@ corresponding types for all back ends can be safely casted to

-
-

2.6 File opening

+
+

2.6 File opening

trexio_open creates a new TREXIO file or opens existing one. @@ -1058,8 +1058,8 @@ know if we need to shift by 1 arrays of indices.

-
-

2.7 File closing

+
+

2.7 File closing

trexio_close closes an existing trexio_t file. @@ -1155,12 +1155,12 @@ output:

-
-

3 Templates for front end

+
+

3 Templates for front end

-
-

3.1 Description

+
+

3.1 Description

Consider the following block of trex.json: @@ -1350,8 +1350,8 @@ or double precision for integer and floating point numbers.

-
-

3.2 Templates for front end has/read/write a single dimensioning variable

+
+

3.2 Templates for front end has/read/write a single dimensioning variable

This section concerns API calls related to dimensioning variables. @@ -1420,8 +1420,8 @@ This section concerns API calls related to dimensioning variables.

-
-

3.2.1 C templates for front end

+
+

3.2.1 C templates for front end

The C templates that correspond to each of the abovementioned @@ -1610,8 +1610,8 @@ precision (see Table above).

-
-

3.2.2 Fortran templates for front end

+
+

3.2.2 Fortran templates for front end

The Fortran templates that provide an access to the C API calls from Fortran. @@ -1697,8 +1697,8 @@ These templates are based on the use of iso_c_binding. Pointers hav

-
-

3.3 Templates for front end has/read/write a dataset of numerical data

+
+

3.3 Templates for front end has/read/write a dataset of numerical data

This section concerns API calls related to datasets. @@ -1767,8 +1767,8 @@ This section concerns API calls related to datasets.

-
-

3.3.1 C templates for front end

+
+

3.3.1 C templates for front end

The C templates that correspond to each of the abovementioned functions can be found below. @@ -2087,8 +2087,8 @@ The basic (non-suffixed) API call on datasets deals with double precision (see T

-
-

3.3.2 Fortran templates for front end

+
+

3.3.2 Fortran templates for front end

The Fortran templates that provide an access to the C API calls from Fortran. @@ -2174,8 +2174,8 @@ These templates are based on the use of iso_c_binding. Pointers hav

-
-

3.4 Sparse data structures

+
+

3.4 Sparse data structures

Sparse data structures are used typically for large tensors such as @@ -2316,12 +2316,12 @@ For the values,

-
-

3.5 Templates for front end has/read/write a dataset of strings

+
+

3.5 Templates for front end has/read/write a dataset of strings

-
-

3.5.1 Introduction

+
+

3.5.1 Introduction

This section concerns API calls related to datasets of strings. @@ -2361,8 +2361,8 @@ This section concerns API calls related to datasets of strings.

-
-

3.5.2 C templates for front end

+
+

3.5.2 C templates for front end

First parameter is the TREXIO file handle. Second parameter is the variable to be written/read @@ -2407,6 +2407,7 @@ to/from the TREXIO file (except for trexio_has_ functi */ } + return TREXIO_FAILURE; } trexio_exit_code @@ -2568,7 +2569,6 @@ to/from the TREXIO file (except for trexio_has_ functi FREE(str_compiled); return rc; - }

@@ -2597,6 +2597,7 @@ to/from the TREXIO file (except for trexio_has_ functi break; */ } + return TREXIO_FAILURE; } @@ -2604,8 +2605,8 @@ to/from the TREXIO file (except for trexio_has_ functi
-
-

3.5.3 Fortran templates for front end

+
+

3.5.3 Fortran templates for front end

The Fortran templates that provide an access to the C API calls from Fortran. @@ -2702,12 +2703,12 @@ These templates are based on the use of iso_c_binding. Pointers hav

-
-

3.6 Templates for front end has/read/write a single string attribute

+
+

3.6 Templates for front end has/read/write a single string attribute

-
-

3.6.1 Introduction

+
+

3.6.1 Introduction

This section concerns API calls related to string attributes. @@ -2747,8 +2748,8 @@ This section concerns API calls related to string attributes.

-
-

3.6.2 C templates for front end

+
+

3.6.2 C templates for front end

trexio_exit_code
@@ -2777,6 +2778,7 @@ This section concerns API calls related to string attributes.
 */
   }
 
+  return TREXIO_FAILURE;
 }
@@ -2810,6 +2812,7 @@ This section concerns API calls related to string attributes. */ } + return TREXIO_FAILURE; }
@@ -2846,8 +2849,8 @@ This section concerns API calls related to string attributes.
-
-

3.6.3 Fortran templates for front end

+
+

3.6.3 Fortran templates for front end

The Fortran templates that provide an access to the C API calls from Fortran. @@ -2926,8 +2929,8 @@ These templates are based on the use of iso_c_binding. Pointers hav

-
-

4 Fortran helper/wrapper functions

+
+

4 Fortran helper/wrapper functions

The function below adapts the original C-based trexio_open for Fortran. @@ -3061,7 +3064,7 @@ two code are identical, i.e. if the assert statement pass.

Author: TREX-CoE

-

Created: 2021-06-16 Wed 12:05

+

Created: 2021-06-17 Thu 18:22

Validate

diff --git a/templator_hdf5.html b/templator_hdf5.html index 58aafe8..0f0064c 100644 --- a/templator_hdf5.html +++ b/templator_hdf5.html @@ -3,7 +3,7 @@ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"> - + HDF5 back end @@ -311,27 +311,27 @@ for the JavaScript code in this tag.

Table of Contents

-
-

1 HDF5 back end

+
+

1 HDF5 back end

-
-

1.1 Template for HDF5 definitions

+
+

1.1 Template for HDF5 definitions

#define $GROUP$_GROUP_NAME          "$group$"
@@ -343,8 +343,8 @@ for the JavaScript code in this tag.
-
-

1.2 Template for HDF5 structures

+
+

1.2 Template for HDF5 structures

typedef struct trexio_hdf5_s {
@@ -359,8 +359,8 @@ for the JavaScript code in this tag.
-
-

1.3 Template for HDF5 init/deinit

+
+

1.3 Template for HDF5 init/deinit

trexio_exit_code
@@ -440,8 +440,8 @@ for the JavaScript code in this tag.
-
-

1.4 Template for HDF5 has/read/write a single dimensioning variable

+
+

1.4 Template for HDF5 has/read/write a single dimensioning variable

trexio_exit_code
@@ -566,8 +566,8 @@ for the JavaScript code in this tag.
-
-

1.5 Template for HDF5 has/read/write a dataset of numerical data

+
+

1.5 Template for HDF5 has/read/write a dataset of numerical data

trexio_exit_code
@@ -696,8 +696,8 @@ for the JavaScript code in this tag.
-
-

1.6 Template for HDF5 has/read/write a dataset of strings

+
+

1.6 Template for HDF5 has/read/write a dataset of strings

trexio_exit_code
@@ -901,8 +901,8 @@ for the JavaScript code in this tag.
-
-

1.7 Template for HDF5 has/read/write a single string attribute

+
+

1.7 Template for HDF5 has/read/write a single string attribute

trexio_exit_code
@@ -1029,7 +1029,7 @@ for the JavaScript code in this tag.

Author: TREX-CoE

-

Created: 2021-06-16 Wed 12:05

+

Created: 2021-06-17 Thu 18:22

Validate

diff --git a/templator_text.html b/templator_text.html index 15acd8e..4608faa 100644 --- a/templator_text.html +++ b/templator_text.html @@ -3,7 +3,7 @@ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"> - + TEXT back end @@ -311,26 +311,26 @@ for the JavaScript code in this tag.

Table of Contents

-
-

1 TEXT back end

+
+

1 TEXT back end

The "file" produced by the text back end is a directory with one @@ -361,8 +361,8 @@ The file is written when closed, or when the flush function is called.

-
-

1.1 Template for group-related structures in text back end

+
+

1.1 Template for group-related structures in text back end

typedef struct $group$_s {
@@ -380,8 +380,8 @@ The file is written when closed, or when the flush function is called.
-
-

1.2 Template for general structure in text back end

+
+

1.2 Template for general structure in text back end

typedef struct rdm_s {
@@ -407,8 +407,8 @@ The file is written when closed, or when the flush function is called.
-
-

1.3 Initialize function (constant part)

+
+

1.3 Initialize function (constant part)

trexio_exit_code
@@ -509,8 +509,8 @@ The file is written when closed, or when the flush function is called.
-
-

1.4 Deinitialize function (templated part)

+
+

1.4 Deinitialize function (templated part)

trexio_exit_code
@@ -535,8 +535,8 @@ The file is written when closed, or when the flush function is called.
-
-

1.5 Template for text read struct

+
+

1.5 Template for text read struct

$group$_t*
@@ -807,8 +807,8 @@ trexio_text_read_$group$ (trexio_text_t*
-
-

1.6 Template for text flush struct

+
+

1.6 Template for text flush struct

trexio_exit_code
@@ -872,8 +872,8 @@ trexio_text_read_$group$ (trexio_text_t*
-
-

1.7 Template for text free memory

+
+

1.7 Template for text free memory

Memory is allocated when reading. The following function frees memory. @@ -918,8 +918,8 @@ Memory is allocated when reading. The following function frees memory.

-
-

1.8 Template for has/read/write the num attribute

+
+

1.8 Template for has/read/write the num attribute

trexio_exit_code
@@ -981,8 +981,8 @@ Memory is allocated when reading. The following function frees memory.
-
-

1.9 Template for has/read/write the dataset of numerical data

+
+

1.9 Template for has/read/write the dataset of numerical data

The group_dset array is assumed allocated with the appropriate size. @@ -1078,8 +1078,8 @@ The group_dset array is assumed allocated with the appropriate size

-
-

1.10 Template for has/read/write the dataset of strings

+
+

1.10 Template for has/read/write the dataset of strings

The group_dset array is assumed allocated with the appropriate size. @@ -1181,8 +1181,8 @@ The group_dset array is assumed allocated with the appropriate size

-
-

1.11 Template for has/read/write the string attribute

+
+

1.11 Template for has/read/write the string attribute

trexio_exit_code
@@ -1256,12 +1256,12 @@ The group_dset array is assumed allocated with the appropriate size
-
-

1.12 RDM struct (hard-coded)

+
+

1.12 RDM struct (hard-coded)

-
-

1.12.1 Read the complete struct

+
+

1.12.1 Read the complete struct

rdm_t* trexio_text_read_rdm(trexio_text_t* const file);
@@ -1356,8 +1356,8 @@ The group_dset array is assumed allocated with the appropriate size
-
-

1.12.2 Flush the complete struct

+
+

1.12.2 Flush the complete struct

trexio_exit_code trexio_text_flush_rdm(trexio_text_t* const file);
@@ -1399,8 +1399,8 @@ The group_dset array is assumed allocated with the appropriate size
-
-

1.12.3 Free memory

+
+

1.12.3 Free memory

Memory is allocated when reading. The followig function frees memory. @@ -1436,8 +1436,8 @@ Memory is allocated when reading. The followig function frees memory.

-
-

1.12.4 Read/Write the onee attribute

+
+

1.12.4 Read/Write the onee attribute

The one_e array is assumed allocated with the appropriate size. @@ -1503,8 +1503,8 @@ The one_e array is assumed allocated with the appropriate size.

-
-

1.12.5 Read/Write the twoe attribute

+
+

1.12.5 Read/Write the twoe attribute

two_e is a sparse data structure, which can be too large to fit @@ -1612,7 +1612,7 @@ file for each sparse float structure.

Author: TREX-CoE

-

Created: 2021-06-16 Wed 12:05

+

Created: 2021-06-17 Thu 18:22

Validate