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https://github.com/TREX-CoE/trexio.git
synced 2024-08-25 06:31:43 +02:00
fixed to compile
This commit is contained in:
parent
aa67877948
commit
cc02849689
@ -85,10 +85,10 @@ templ_path_hdf5 = join(fileDir,'templates_hdf5')
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templ_path_front = join(fileDir,'templates_front')
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templ_path_front = join(fileDir,'templates_front')
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#clean the populated/ directory
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#clean the populated/ directory
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for popdir in [templ_path_front, templ_path_front, templ_path_text]:
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#for popdir in [templ_path_front, templ_path_front, templ_path_text]:
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cleandir = join(popdir, 'populated')
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# cleandir = join(popdir, 'populated')
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for f in scandir(cleandir):
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# for f in scandir(cleandir):
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remove(f.path)
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# remove(f.path)
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files_exclude = ['prefix_hdf5.c', 'prefix_hdf5.h', 'suffix_hdf5.h',
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files_exclude = ['prefix_hdf5.c', 'prefix_hdf5.h', 'suffix_hdf5.h',
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'prefix_text.c', 'prefix_text.h', 'suffix_text.h',
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'prefix_text.c', 'prefix_text.h', 'suffix_text.h',
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@ -329,8 +329,8 @@ for fname in ['def_hdf5.c', 'basic_hdf5.c', 'basic_text_group.c',
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templine2 = templine1.replace('$group_dset$', dset)
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templine2 = templine1.replace('$group_dset$', dset)
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f_out.write(templine2)
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f_out.write(templine2)
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elif '$group_num$' in line or '$GROUP_NUM$' in line :
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elif '$group_num$' in line or '$GROUP_NUM$' in line :
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#for num in dim_variables.keys():
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for num in dim_variables.keys():
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for num in numbers.keys():
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#for num in numbers.keys():
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templine1 = line.replace('$GROUP_NUM$', num.upper())
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templine1 = line.replace('$GROUP_NUM$', num.upper())
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templine2 = templine1.replace('$group_num$', num)
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templine2 = templine1.replace('$group_num$', num)
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f_out.write(templine2)
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f_out.write(templine2)
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@ -1,4 +1,4 @@
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g+Title: Templator for frontend
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#+Title: Templator for frontend
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* Constant file prefixes (not used by generator) :noxport:
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* Constant file prefixes (not used by generator) :noxport:
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@ -50,6 +50,41 @@ g+Title: Templator for frontend
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#include <assert.h>
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#include <assert.h>
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#+end_src
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#+end_src
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* Coding conventions
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- integer types will be defined using types given in ~stdint.h~
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- pointers are always initialized to ~NULL~
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- when memory is freed, the pointer is set to ~NULL~
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- ~assert.h~ should be used extensively
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- variable names are in lower case
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- ~#define~ constants are in upper case
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- structs are suffixed by ~_s~
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- types are suffixed by ~_t~
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** Memory allocation
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Memory allocation of structures can be facilitated by using the
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following macro, which ensures that the size of the allocated
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object is the same as the size of the data type pointed by the pointer.
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#+begin_src c :tangle trexio_private.h
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#define MALLOC(T) (T*) malloc (sizeof(T));
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#define CALLOC(N,T) (T*) calloc ((N),sizeof(T));
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#+end_src
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When a pointer is freed, it should be set to ~NULL~.
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This can be facilitated by the use of the following macro:
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#+begin_src c :tangle trexio_private.h
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#define FREE(X) { free(X) ; (X)=NULL; }
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#+end_src
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* Front end
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All calls to TREXIO are thread-safe.
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** Error handling
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** Error handling
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#+begin_src c :tangle prefix_front.h
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#+begin_src c :tangle prefix_front.h
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typedef int32_t trexio_exit_code;
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typedef int32_t trexio_exit_code;
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@ -65,7 +100,9 @@ typedef int32_t trexio_exit_code;
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#define TREXIO_READONLY ( (trexio_exit_code) 11 )
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#define TREXIO_READONLY ( (trexio_exit_code) 11 )
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#define TREXIO_ERRNO ( (trexio_exit_code) 12 )
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#define TREXIO_ERRNO ( (trexio_exit_code) 12 )
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#define TREXIO_INVALID_ID ( (trexio_exit_code) 20 )
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#define TREXIO_INVALID_ID ( (trexio_exit_code) 20 )
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#define TREXIO_INVALID_NUM ( (trexio_exit_code) 21 )
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#define TREXIO_ALLOCATION_FAILED ( (trexio_exit_code) 21 )
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#define TREXIO_INVALID_NUM ( (trexio_exit_code) 22 )
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#+end_src
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#+end_src
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** Back ends
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** Back ends
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@ -318,7 +355,7 @@ trexio_exit_code trexio_close(trexio_t* file) {
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#+end_src
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#+end_src
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* Front end
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* Templates for front end
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** Template for frontend read/write a number
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** Template for frontend read/write a number
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@ -405,16 +442,13 @@ trexio_exit_code trexio_read_$group$_$group_dset$(trexio_t* file, $group_dset_dt
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rc = trexio_hdf5_read_$group_dset_dim$(file, &$group_dset_dim$);
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rc = trexio_hdf5_read_$group_dset_dim$(file, &$group_dset_dim$);
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if ($group_dset_dim$ <= 0L) return TREXIO_INVALID_NUM;
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if ($group_dset_dim$ <= 0L) return TREXIO_INVALID_NUM;
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int64_t dim_total = nucleus_num*3;
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if (dim_total < 0) return TREXIO_FAILURE;
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uint32_t rank = $group_dset_rank$;
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uint32_t rank = $group_dset_rank$;
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uint64_t dims[$group_dset_rank$] = {$group_dset_dim_list$};
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uint64_t dims[$group_dset_rank$] = {$group_dset_dim_list$};
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switch (file->back_end) {
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switch (file->back_end) {
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case TREXIO_TEXT:
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case TREXIO_TEXT:
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return trexio_text_read_$group$_$group_dset$(file, $group_dset$, (uint64_t) dim_total);
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return trexio_text_read_$group$_$group_dset$(file, $group_dset$, rank, dims);
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break;
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break;
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case TREXIO_HDF5:
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case TREXIO_HDF5:
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@ -443,16 +477,13 @@ trexio_exit_code trexio_write_$group$_$group_dset$(trexio_t* file, const $group_
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rc = trexio_hdf5_read_$group_dset_dim$(file, &$group_dset_dim$);
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rc = trexio_hdf5_read_$group_dset_dim$(file, &$group_dset_dim$);
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if ($group_dset_dim$ <= 0L) return TREXIO_INVALID_NUM;
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if ($group_dset_dim$ <= 0L) return TREXIO_INVALID_NUM;
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int64_t dim_total = nucleus_num*3;
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if (dim_total < 0) return TREXIO_FAILURE;
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uint32_t rank = $group_dset_rank$;
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uint32_t rank = $group_dset_rank$;
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uint64_t dims[$group_dset_rank$] = {$group_dset_dim_list$};
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uint64_t dims[$group_dset_rank$] = {$group_dset_dim_list$};
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switch (file->back_end) {
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switch (file->back_end) {
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case TREXIO_TEXT:
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case TREXIO_TEXT:
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return trexio_text_write_$group$_$group_dset$(file, $group_dset$, (uint64_t) dim_total);
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return trexio_text_write_$group$_$group_dset$(file, $group_dset$, rank, dims);
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break;
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break;
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case TREXIO_HDF5:
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case TREXIO_HDF5:
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@ -583,7 +583,7 @@ trexio_exit_code trexio_text_write_$group_dset$(const trexio_t* file, const $gro
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trexio_exit_code trexio_text_read_$group_dset$(const trexio_t* file, $group_dset_dtype$* $group_dset$, const uint32_t rank, const uint64_t* dims) {
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trexio_exit_code trexio_text_read_$group_dset$(const trexio_t* file, $group_dset_dtype$* $group_dset$, const uint32_t rank, const uint64_t* dims) {
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if (file == NULL) return TREXIO_INVALID_ARG_1;
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if (file == NULL) return TREXIO_INVALID_ARG_1;
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if (coord == NULL) return TREXIO_INVALID_ARG_2;
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if ($group_dset$ == NULL) return TREXIO_INVALID_ARG_2;
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$group$_t* $group$ = trexio_text_read_$group$((trexio_text_t*) file);
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$group$_t* $group$ = trexio_text_read_$group$((trexio_text_t*) file);
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if ($group$ == NULL) return TREXIO_FAILURE;
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if ($group$ == NULL) return TREXIO_FAILURE;
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@ -608,7 +608,7 @@ trexio_exit_code trexio_text_read_$group_dset$(const trexio_t* file, $group_dset
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trexio_exit_code trexio_text_write_$group_dset$(const trexio_t* file, const $group_dset_dtype$* $group_dset$, const uint32_t rank, const uint64_t* dims) {
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trexio_exit_code trexio_text_write_$group_dset$(const trexio_t* file, const $group_dset_dtype$* $group_dset$, const uint32_t rank, const uint64_t* dims) {
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if (file == NULL) return TREXIO_INVALID_ARG_1;
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if (file == NULL) return TREXIO_INVALID_ARG_1;
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if (coord == NULL) return TREXIO_INVALID_ARG_2;
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if ($group_dset$ == NULL) return TREXIO_INVALID_ARG_2;
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if (file->mode == 'r') return TREXIO_READONLY;
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if (file->mode == 'r') return TREXIO_READONLY;
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