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[wheel build] Release 2.5.0 + updated README
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README.md
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README.md
@ -15,31 +15,30 @@ which enables fast read and write operations. It is compatible with a variety
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of platforms and has interfaces for the Fortran, Python, OCaml and Rust
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programming languages.
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* [TREXIO](#trexio)
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* [Installation](#installation)
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* [Installation using a package manager](#installation-using-a-package-manager)
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* [Conda](#conda)
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* [Spack](#spack)
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* [Guix](#guix)
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* [Debian/Ubuntu](#debianubuntu)
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* [Installation from source](#installation-from-source)
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* [Minimal requirements (for users):](#minimal-requirements-for-users)
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* [Recommended: Installation from the release tarball](#recommended-installation-from-the-release-tarball)
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* [Compilation without the HDF5 library](#compilation-without-the-hdf5-library)
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* [For TREXIO developers: from the GitHub repo clone](#for-trexio-developers-from-the-github-repo-clone)
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* [Using CMake instead of Autotools](#using-cmake-instead-of-autotools)
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* [Using TREXIO](#using-trexio)
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* [Naming convention](#naming-convention)
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* [Tutorial](#tutorial)
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* [Documentation](#documentation)
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* [Linking to your program](#linking-to-your-program)
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* [Distributing TREXIO with your code](#distributing-trexio-with-your-code)
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* [APIs for other languages](#apis-for-other-languages)
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* [Python](#python)
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* [Rust](#rust)
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* [OCaml](#ocaml)
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* [Citation](#citation)
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* [Miscellaneous](#miscellaneous)
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* [Installation](#installation)
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* [Installation using a package manager](#installation-using-a-package-manager)
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* [Conda](#conda)
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* [Spack](#spack)
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* [Guix](#guix)
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* [Debian/Ubuntu](#debianubuntu)
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* [Installation from source](#installation-from-source)
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* [Minimal requirements (for users):](#minimal-requirements-for-users)
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* [Recommended: Installation from the release tarball](#recommended-installation-from-the-release-tarball)
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* [Compilation without the HDF5 library](#compilation-without-the-hdf5-library)
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* [For TREXIO developers: from the GitHub repo clone](#for-trexio-developers-from-the-github-repo-clone)
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* [Using CMake instead of Autotools](#using-cmake-instead-of-autotools)
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* [Using TREXIO](#using-trexio)
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* [Naming convention](#naming-convention)
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* [Tutorial](#tutorial)
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* [Documentation](#documentation)
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* [Linking to your program](#linking-to-your-program)
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* [Distributing TREXIO with your code](#distributing-trexio-with-your-code)
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* [APIs for other languages](#apis-for-other-languages)
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* [Python](#python)
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* [Rust](#rust)
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* [OCaml](#ocaml)
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* [Citation](#citation)
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* [Miscellaneous](#miscellaneous)
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## Installation
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@ -11,8 +11,8 @@ can be used to convert data from one input/output file format into another.
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## Requirements
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- python3 (>= 3.6)
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- numpy (>= 1.17.3)
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- python3 (>= 3.8)
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- numpy (>= 1.17.3)
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## Installation from PyPI
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@ -27,10 +27,6 @@ However, it is good practice to first check for updates of the build-system pack
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**Note: we highly recommend to use virtual environments to avoid compatibility issues and to improve reproducibility.**
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For more details, see the corresponding part of the [Python documentation](https://docs.python.org/3/library/venv.html#creating-virtual-environments).
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**Note: our build farm (GitHub Actions) does not support ARM64 architectures (including the Mac M1/M2 chips). Therefore, `pip install trexio` does not work on an ARM64-based machine. Thus, we recommend to install TREXIO from source on an ARM64-based machine. If one uses a Mac where HDF5 is installed with brew (i.e., `brew install hdf5`), a workaround is to execute the following 2 lines before doing `pip install trexio`:**
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- `export H5_CFLAGS="-I$(brew --prefix hdf5)/include"`
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- `export H5_LDFLAGS="-L$(brew --prefix hdf5)/lib"`
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## Additional requirements (for installation from source)
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@ -50,6 +46,9 @@ For more details, see the corresponding part of the [Python documentation](https
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The following two steps can be skipped if HDF5 is properly configured for `pkg-config` (i.e. if executing `pkg-config --libs hdf5` returns a list of options).
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- `export H5_CFLAGS=-I/path/to/hdf5/include`
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- `export H5_LDFLAGS=-L/path/to/hdf5/lib`
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On MacOS where HDF5 is installed with homebrew (i.e. `brew install hdf5`), one can use the following:
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- `export H5_CFLAGS="-I$(brew --prefix hdf5)/include"`
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- `export H5_LDFLAGS="-L$(brew --prefix hdf5)/lib"`
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6. `pip install .` (this installs `trexio` in your environment)
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7. `cd test && python -m pytest -v test_api.py` (this executes several tests that verify the installation)
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