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https://github.com/TREX-CoE/trexio.git
synced 2024-08-25 06:31:43 +02:00
replace offset_data arg with pointer arithmetics
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99a234853b
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@ -2396,8 +2396,8 @@ def has_$group_dset$(trexio_file) -> bool:
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#+begin_src c :tangle hrw_dset_sparse_front.h :exports none
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trexio_exit_code trexio_has_$group_sparse_dset$(trexio_t* const file);
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trexio_exit_code trexio_read_$group_sparse_dset$(trexio_t* const file, const int64_t offset_file, const int64_t offset_data, const int64_t size, int32_t* const index_sparse, double* const value_sparse);
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trexio_exit_code trexio_write_$group_sparse_dset$(trexio_t* const file, const int64_t offset_file, const int64_t offset_data, const int64_t size, const int32_t* index_sparse, const double* value_sparse);
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trexio_exit_code trexio_read_$group_sparse_dset$(trexio_t* const file, const int64_t offset_file, const int64_t size, int32_t* const index_sparse, double* const value_sparse);
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trexio_exit_code trexio_write_$group_sparse_dset$(trexio_t* const file, const int64_t offset_file, const int64_t size, const int32_t* index_sparse, const double* value_sparse);
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//trexio_exit_code trexio_read_$group_sparse_dset$_value(trexio_t* const file, const uint64_t offset, const uint_64_t size, int32_t* const value_sparse);
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//trexio_exit_code trexio_write_$group_sparse_dset$_value(trexio_t* const file, const uint64_t offset, const uint_64_t size, double* const value_sparse);
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#+end_src
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@ -2408,7 +2408,6 @@ trexio_exit_code trexio_write_$group_sparse_dset$(trexio_t* const file, const in
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trexio_exit_code
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trexio_read_$group_sparse_dset$(trexio_t* const file,
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const int64_t offset_file,
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const int64_t offset_data,
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const int64_t size,
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int32_t* const index_sparse,
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double* const value_sparse
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@ -2435,12 +2434,12 @@ trexio_read_$group_sparse_dset$(trexio_t* const file,
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switch (file->back_end) {
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case TREXIO_TEXT:
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return trexio_text_read_$group_sparse_dset$(file, offset_file, offset_data, size, size_max, index_sparse, value_sparse);
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return trexio_text_read_$group_sparse_dset$(file, offset_file, size, size_max, index_sparse, value_sparse);
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break;
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case TREXIO_HDF5:
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#ifdef HAVE_HDF5
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return trexio_hdf5_read_$group_sparse_dset$(file, offset_file, offset_data, size, size_max, index_sparse, value_sparse);
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return trexio_hdf5_read_$group_sparse_dset$(file, offset_file, size, size_max, index_sparse, value_sparse);
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break;
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#else
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return TREXIO_BACK_END_MISSING;
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@ -2460,7 +2459,6 @@ trexio_read_$group_sparse_dset$(trexio_t* const file,
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trexio_exit_code
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trexio_write_$group_sparse_dset$(trexio_t* const file,
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const int64_t offset_file,
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const int64_t offset_data,
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const int64_t size,
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const int32_t* index_sparse,
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const double* value_sparse
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@ -2487,12 +2485,12 @@ trexio_write_$group_sparse_dset$(trexio_t* const file,
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switch (file->back_end) {
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case TREXIO_TEXT:
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return trexio_text_write_$group_sparse_dset$(file, offset_file, offset_data, size, size_max, index_sparse, value_sparse);
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return trexio_text_write_$group_sparse_dset$(file, offset_file, size, size_max, index_sparse, value_sparse);
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break;
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case TREXIO_HDF5:
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#ifdef HAVE_HDF5
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return trexio_hdf5_write_$group_sparse_dset$(file, offset_file, offset_data, size, size_max, index_sparse, value_sparse);
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return trexio_hdf5_write_$group_sparse_dset$(file, offset_file, size, size_max, index_sparse, value_sparse);
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break;
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#else
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return TREXIO_BACK_END_MISSING;
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@ -1005,14 +1005,13 @@ trexio_text_has_$group_str$ (trexio_t* const file)
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#+begin_src c :tangle hrw_dset_sparse_text.h :exports none
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trexio_exit_code trexio_text_has_$group_sparse_dset$(trexio_t* const file);
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trexio_exit_code trexio_text_read_$group_sparse_dset$(trexio_t* const file, const int64_t offset_file, const int64_t offset_dset, const int64_t size, const int64_t size_max, int32_t* const index_sparse, double* const value_sparse);
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trexio_exit_code trexio_text_write_$group_sparse_dset$(trexio_t* const file, const int64_t offset_file, const int64_t offset_dset, const int64_t size, const int64_t size_max, const int32_t* index_sparse, const double* value_sparse);
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trexio_exit_code trexio_text_read_$group_sparse_dset$(trexio_t* const file, const int64_t offset_file, const int64_t size, const int64_t size_max, int32_t* const index_sparse, double* const value_sparse);
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trexio_exit_code trexio_text_write_$group_sparse_dset$(trexio_t* const file, const int64_t offset_file, const int64_t size, const int64_t size_max, const int32_t* index_sparse, const double* value_sparse);
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#+end_src
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#+begin_src c :tangle write_dset_sparse_text.c
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trexio_exit_code trexio_text_write_$group_sparse_dset$(trexio_t* const file,
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const int64_t offset_file,
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const int64_t offset_dset,
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const int64_t size,
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const int64_t size_max,
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const int32_t* index_sparse,
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@ -1042,7 +1041,7 @@ trexio_exit_code trexio_text_write_$group_sparse_dset$(trexio_t* const file,
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//fseek(f, (long) offset_file * line_length, SEEK_SET);
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int rc;
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for (uint64_t i=0L+offset_dset ; i<size+offset_dset ; ++i) {
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for (uint64_t i=0L; i<size; ++i) {
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rc = fprintf(f, "$group_sparse_dset_format_printf$\n",
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$group_sparse_dset_indices_printf$,
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value_sparse[i]);
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@ -1068,7 +1067,6 @@ trexio_exit_code trexio_text_write_$group_sparse_dset$(trexio_t* const file,
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#+begin_src c :tangle read_dset_sparse_text.c
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trexio_exit_code trexio_text_read_$group_sparse_dset$(trexio_t* const file,
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const int64_t offset_file,
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const int64_t offset_dset,
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const int64_t size,
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const int64_t size_max,
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int32_t* const index_sparse,
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@ -1098,7 +1096,7 @@ trexio_exit_code trexio_text_read_$group_sparse_dset$(trexio_t* const file,
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fseek(f, (long) offset_file * line_length, SEEK_SET);
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int rc;
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for (uint64_t i=0L+offset_dset ; i<size+offset_dset ; ++i) {
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for (uint64_t i=0L; i<size; ++i) {
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rc = fscanf(f, "$group_sparse_dset_format_scanf$",
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$group_sparse_dset_indices_scanf$,
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&value_sparse[i]);
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@ -55,7 +55,7 @@ int main(){
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// write 5 chunks using write_sparse
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for(int i=0; i<n_chunks; ++i){
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rc = trexio_write_mo_2e_int_eri(trexio_file, offset_f, offset_f, chunk_size, index, value);
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rc = trexio_write_mo_2e_int_eri(trexio_file, offset_f, chunk_size, &index[4*offset_f], &value[offset_f]);
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assert(rc==TREXIO_SUCCESS);
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offset_f += chunk_size;
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}
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@ -78,7 +78,8 @@ int main(){
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// read 1 chunk of 20 elements using offset of 40( i.e. lines No. 40--59)
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uint64_t offset_f_read = 40L;
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rc = trexio_read_mo_2e_int_eri(trexio_file_2, offset_f_read, 0L, chunk_size, index_read, value_read);
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int offset_data_read = 5;
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rc = trexio_read_mo_2e_int_eri(trexio_file_2, offset_f_read, 10L, &index_read[4*offset_data_read], &value_read[offset_data_read]);
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assert(rc==TREXIO_SUCCESS);
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// print the data being read
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@ -681,8 +681,8 @@ def split_dset_dict_detailed (datasets: dict) -> tuple:
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tmp_dict['group_sparse_dset_format_scanf'] = "%d %d %d %d %lf"
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tmp_dict['group_sparse_dset_format_printf'] = "%10d %10d %10d %10d %24.16e"
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tmp_dict['group_sparse_dset_line_length'] = "69"
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tmp_dict['group_sparse_dset_indices_printf'] = "index_sparse[4*i], index_sparse[4*i+1], index_sparse[4*i+2], index_sparse[4*i+3]"
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tmp_dict['group_sparse_dset_indices_scanf'] = "&index_sparse[4*i], &index_sparse[4*i+1], &index_sparse[4*i+2], &index_sparse[4*i+3]"
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tmp_dict['group_sparse_dset_indices_printf'] = "*(index_sparse + 4*i), *(index_sparse + 4*i+1), *(index_sparse + 4*i+2), *(index_sparse + 4*i+3)"
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tmp_dict['group_sparse_dset_indices_scanf'] = "index_sparse + 4*i, index_sparse + 4*i+1, index_sparse + 4*i+2, index_sparse + 4*i+3"
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# add group name as a key-value pair to the dset dict
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tmp_dict['group'] = v[2]
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