mirror of
https://github.com/TREX-CoE/trexio.git
synced 2024-12-22 04:14:40 +01:00
Autoconfig with optional HDF5 compilation (#42)
Makefile.in: * recursive build; * advanced make targets; * major support for autoconf and minor for package managers. configure.ac: * optional HDF5 compilation [default: --with-hdf5]; * add -fPIC to CFLAGS if missing.
This commit is contained in:
Evgeny Posenitskiy
GitHub
parent
08a28c9ae4
commit
818d66d4d3
13
.gitignore
vendored
Normal file
13
.gitignore
vendored
Normal file
@ -0,0 +1,13 @@
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Makefile
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src/Makefile
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auto-bugs
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autogen.sh
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autom4te.cache/
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clean.sh
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config.*
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configure
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install-sh
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trexio-*.tar.gz
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trexio-*/
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83
Makefile.in
Normal file
83
Makefile.in
Normal file
@ -0,0 +1,83 @@
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# @configure_input@
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# Package-specific substitution variables
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package = @PACKAGE_NAME@
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version = @PACKAGE_VERSION@
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tarname = @PACKAGE_TARNAME@
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distdir = $(tarname)-$(version)
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# Prefix-specific substitution variables
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prefix = @prefix@
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includedir = @includedir@
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docdir = @docdir@
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htmldir = @htmldir@
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libdir = @libdir@
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# Supplementary
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exec_prefix = @exec_prefix@
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libexecdir = @libexecdir@
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lispdir = @lispdir@
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# VPATH-specific substitution variables
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srcdir = @srcdir@
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VPATH = @srcdir@
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# Tool-specific substitution variables
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CC = @CC@
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CFLAGS = @CFLAGS@
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CPPFLAGS = @CPPFLAGS@
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FC = @FC@
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FCFLAGS = @FCFLAGS@
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LIBS = @LIBS@
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LDFLAGS = @LDFLAGS@
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INSTALL = @INSTALL@
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.PHONY: FORCE all install clean check dist distcheck
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.POSIX:
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.SUFFIXES:
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all install clean check:
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cd src && $(MAKE) $@
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dist: $(distdir).tar.gz
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$(distdir).tar.gz: $(distdir)
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tar chof - $(distdir) | gzip -9 -c > $@
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rm -rf $(distdir)
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# for now copy entire src/ directory into $(distdir) in order for distcheck rule to work
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# later on can be changed to ship only files like *.c *.h *.f90 *.so *.mod
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$(distdir): FORCE
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mkdir -p $(distdir)
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cp $(srcdir)/configure.ac $(distdir)
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cp $(srcdir)/configure $(distdir)
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cp $(srcdir)/config.h.in $(distdir)
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cp $(srcdir)/install-sh $(distdir)
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cp -r $(srcdir)/src $(distdir)
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cp $(srcdir)/Makefile.in $(distdir)
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cp $(srcdir)/LICENSE $(distdir)
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FORCE:
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-rm $(distdir).tar.gz >/dev/null 2>&1
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-rm -rf $(distdir) >/dev/null 2>&1
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distcheck: $(distdir).tar.gz
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gzip -cd $(distdir).tar.gz | tar xvf -
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cd $(distdir) && \
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./configure CC="$(CC)" CFLAGS="$(CFLAGS)" && \
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$(MAKE) all && \
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$(MAKE) check && \
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$(MAKE) DESTDIR=$${PWD}/_inst install && \
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$(MAKE) clean
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rm -rf $(distdir)
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@echo "*** Package $(distdir).tar.gz is ready for distribution."
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Makefile: Makefile.in config.status
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./config.status $@
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config.status: configure
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./config.status --recheck
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152
configure.ac
Normal file
152
configure.ac
Normal file
@ -0,0 +1,152 @@
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# -*- Autoconf -*-
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# Process this file with autoconf to produce a configure script.
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AC_PREREQ([2.69])
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AC_INIT([TREXIO], [0.2], [https://github.com/TREX-CoE/trexio/issues])
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AC_CONFIG_SRCDIR([src/trexio_text.h])
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AC_CONFIG_HEADERS([config.h])
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PKG_PROG_PKG_CONFIG()
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# Checks for programs.
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AC_PROG_CC
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AC_PROG_FC
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AC_PROG_INSTALL
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AC_PROG_LN_S
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AC_PROG_CC_C99
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# Configure with HDF5 (default: --with-hdf5 using pkg-config) [optional]:
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# ./configure [--with-hdf5 or --with-hdf5=yes]
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# Configure with user-provided path to HDF5:
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# ./configure --with-hdf5=/usr/lib/x86_64-linux-gnu/hdf5/serial
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# Configure without HDF5:
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# ./configure --without-hdf5 [or --with-hdf5=no]
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# Checks for basic libraries.
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AC_CHECK_LIB([m], [main])
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AC_CHECK_LIB([z], [main])
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# Checks for basic header files.
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AC_CHECK_HEADERS([fcntl.h stdint.h stdlib.h string.h unistd.h])
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# Search for pthread
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have_pthreads=no
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AC_SEARCH_LIBS([pthread_create], [pthread], [have_pthreads=yes])
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if test "x${have_pthreads}" = xyes; then
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AC_CHECK_HEADERS([pthread.h], [], [have_pthreads=no])
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fi
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if test "x${have_pthreads}" = xno; then
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AC_MSG_ERROR([
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------------------------------------------
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The pthread library and header file
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required to build TREXIO. Stopping...
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Check 'config.log' for more information.
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------------------------------------------])
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fi
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AC_ARG_WITH([hdf5],
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AS_HELP_STRING([--with-hdf5],
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[Include HDF5 functionality @<:@default: yes@:>@])],
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[hdf5=${withval}],
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[hdf5=yes])
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have_hdf5=no
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have_hdf5_hl=no
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if test "x${hdf5}" = xno; then
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AC_MSG_WARN([
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------------------------------------------
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Configuring with the HDF5 library is
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recommended to build efficient TREXIO.
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------------------------------------------])
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elif test "x${hdf5}" = xyes; then
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# Check if HDF5 is already configured (e.g. after calling `module load hdf5-<version>`)
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AC_CHECK_HEADERS([hdf5_hl.h])
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AC_CHECK_LIB([hdf5_hl], [H5LTfind_dataset], [], [have_hdf5_hl=no])
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AC_CHECK_HEADERS([hdf5.h])
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AC_CHECK_LIB([hdf5], [H5open], [], [have_hdf5=no])
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# If HDF5 is not configured, try using pkg-config
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if test "x${have_hdf5}" = xno; then
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PKG_CHECK_MODULES([HDF5], [hdf5 >= 1.8])
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CFLAGS="${HDF5_CFLAGS} ${CFLAGS}"
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LIBS="${HDF5_LIBS} -lhdf5_hl ${LIBS}"
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fi
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else
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if test "x${hdf5}" = x; then
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AC_MSG_ERROR([
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------------------------------------------
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The path to HDF5 library is required.
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Maybe you forgot to pass --with-hdf5="/your/path/" to configure script.
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Stopping...
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------------------------------------------])
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fi
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CPPFLAGS="-I${hdf5}/include ${CPPFLAGS}"
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LDFLAGS="-L${hdf5} ${LDFLAGS}"
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AC_CHECK_HEADERS([hdf5_hl.h], [], [have_hdf5_hl=no])
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AC_CHECK_LIB([hdf5_hl], [H5LTfind_dataset], [], [have_hdf5_hl=no])
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AC_CHECK_HEADERS([hdf5.h], [], [have_hdf5=no])
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AC_CHECK_LIB([hdf5], [H5open], [], [have_hdf5=no])
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fi
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# add -fPIC if not present in CFLAGS, necessary to compile TREXIO
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# TODO: replace with AM_CFLAGS for appropriate targer once Automake is introduced
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case "${CFLAGS}" in
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*-fPIC*)
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;;
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*)
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AC_MSG_WARN([
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------------------------------------------
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Adding -fPIC option to CFLAGS.
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This is necessary to build TREXIO.
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------------------------------------------])
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CFLAGS="${CFLAGS} -fPIC"
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;;
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esac
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# Checks for typedefs, structures, and compiler characteristics.
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AC_TYPE_INT32_T
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AC_TYPE_INT64_T
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AC_TYPE_SIZE_T
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AC_TYPE_UINT32_T
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AC_TYPE_UINT64_T
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# Checks for library functions.
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AC_FUNC_MALLOC
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AC_CHECK_FUNCS([memset mkdir strerror])
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AC_CONFIG_FILES([Makefile
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src/Makefile])
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AC_OUTPUT
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echo \
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"-------------------------------------------------
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${PACKAGE_NAME} Version ${PACKAGE_VERSION}
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Prefix: '${prefix}'.
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CC: ${CC}
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CPPFLAGS: ${CPPFLAGS}
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CFLAGS: ${CFLAGS}
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FC: ${FC}
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FCLAGS: ${FCFLAGS}
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LDFLAGS: ${LDFLAGS}
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LIBS: ${LIBS}
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Package features:
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Compilation with HDF5: ${hdf5}
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Now type 'make @<:@<target>@:>@'
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where the optional <target> is:
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all - build C and Fortran APIs
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check - check C and Fortran APIs
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clean - clean the produced files
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--------------------------------------------------"
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95
src/Makefile
95
src/Makefile
@ -1,95 +0,0 @@
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COMPILER=GNU
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#COMPILER=INTEL
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#COMPILER=LLVM
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ifeq ($(COMPILER),GNU)
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CC=gcc -g
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CFLAGS=-fPIC -fexceptions -Wall -Werror -Wpedantic -Wextra
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FC=gfortran -g
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FFLAGS=-fPIC -fcheck=all -Waliasing -Wampersand -Wconversion -Wsurprising -Wintrinsics-std -Wno-tabs -Wintrinsic-shadow -Wline-truncation -Wreal-q-constant -Wuninitialized -fbacktrace -ffpe-trap=zero,overflow,underflow -finit-real=nan
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LIBS= $(shell pkg-config --libs hdf5) -lhdf5_hl -lgfortran
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INCLUDE = $(shell pkg-config --cflags hdf5)
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endif
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ifeq ($(COMPILER),INTEL)
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CC=icc -xHost
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CFLAGS=-fPIC -g -O2
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FC=ifort -xHost
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FFLAGS=-fPIC -g -O2
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LIBS= #-lm
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endif
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#TODO
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ifeq ($(COMPILER),LLVM)
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CC=clang
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CFLAGS=-fPIC -g -O2
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FC=flang
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FFLAGS=fPIC -g -O2
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LIBS=-lm
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endif
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OBJECT_FILES= trexio.o trexio_text.o trexio_hdf5.o
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SOURCE_FILES= test.c trexio.c trexio_hdf5.c trexio_text.c
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HEADER_FILES= trexio.h trexio_text.h trexio_hdf5.h trexio_s.h
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ORG_FILES= templates_front/templator_front.org templates_text/templator_text.org \
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templates_hdf5/templator_hdf5.org
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export CC CFLAGS FC FFLAGS LIBS
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.PHONY: clean
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libtrexio.so: $(OBJECT_FILES) $(HEADER_FILES)
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$(CC) -shared $(OBJECT_FILES) -o libtrexio.so
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fortran: trexio_f.o
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trexio_f.o: libtrexio.so trexio_f.f90
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$(FC) $(FFLAGS) -c trexio_f.f90 -o trexio_f.o
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check: cppcheck.out
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cat cppcheck.out
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cppcheck.out: $(HEADER_FILES) $(SOURCE_FILES)
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cppcheck --addon=cert -q --error-exitcode=0 \
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--enable=warning,performance,portability,missingInclude,information \
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--language=c --std=c99 -rp --platform=unix64 \
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$(INCLUDE) $(SOURCE_FILES) 2>$@
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trexio.c trexio_f.f90 trexio.h: $(ORG_FILES)
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./build_trexio.sh
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test_c: libtrexio.so test.c
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$(CC) $(CFLAGS) $(INCLUDE) -Wl,-rpath,$(PWD) -L. test.c -ltrexio $(LIBS) -o test_c
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test_f: libtrexio.so test.f90 trexio_f.o
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$(FC) $(FFLAGS) $(INCLUDE) -Wl,-rpath,$(PWD) -L. test.f90 trexio_f.o -ltrexio $(LIBS) -o test_f
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test: test_c test_f
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$(RM) -r trexio_test
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$(RM) -r trexio_test_fort
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./test_c
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./test_f
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clean:
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$(RM) *.o libtrexio.so test_*.h5 test_f test_c
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$(RM) -r trexio_test/ trexio_test_fort/
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%.o: %.c $(HEADER_FILES)
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$(CC) $(CFLAGS) $(INCLUDE) -c $*.c -o $*.o
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133
src/Makefile.in
Normal file
133
src/Makefile.in
Normal file
@ -0,0 +1,133 @@
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# @configure_input@
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# Package-specific substitution variables
|
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package = @PACKAGE_NAME@
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version = @PACKAGE_VERSION@
|
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tarname = @PACKAGE_TARNAME@
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distdir = $(tarname)-$(version)
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# Prefix-specific substitution variables
|
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prefix = @prefix@
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includedir = @includedir@
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docdir = @docdir@
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htmldir = @htmldir@
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libdir = @libdir@
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# Supplementary
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exec_prefix = @exec_prefix@
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libexecdir = @libexecdir@
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lispdir = @lispdir@
|
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# VPATH-specific substitution variables
|
||||
srcdir = @srcdir@
|
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VPATH = @srcdir@
|
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|
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# Tool-specific substitution variables
|
||||
CC = @CC@
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CFLAGS = @CFLAGS@
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CPPFLAGS = @CPPFLAGS@
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FC = @FC@
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FCFLAGS = @FCFLAGS@
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LIBS = @LIBS@
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LDFLAGS = @LDFLAGS@
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INSTALL = @INSTALL@
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ifeq ($(CC),gcc)
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#CFLAGS = -g -fPIC -O2 -fexceptions -Wall -Werror -Wpedantic -Wextra
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endif
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ifeq ($(FC),gfortran)
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#FCFLAGS = -g -fPIC -O2 -fcheck=all -Waliasing -Wampersand -Wconversion -Wsurprising -Wintrinsics-std -Wno-tabs -Wintrinsic-shadow -Wline-truncation -Wreal-q-constant -Wuninitialized -fbacktrace -ffpe-trap=zero,overflow,underflow -finit-real=nan
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endif
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|
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ifeq ($(CC),icc)
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#CFLAGS = -xHost -fPIC -g -O2 -fexceptions -Wall -Werror -Wpedantic -Wextra
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endif
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ifeq ($(FC),ifort)
|
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#FCFLAGS = -xHost -fPIC -g -O2
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endif
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|
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ifeq ($(CC),clang)
|
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#CFLAGS = -fPIC -g -O2
|
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endif
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ifeq ($(FC),flang)
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#FCFLAGS = -fPIC -g -O2
|
||||
endif
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OBJECT_FILES= trexio.o trexio_text.o trexio_hdf5.o
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SOURCE_FILES= test.c trexio.c trexio_hdf5.c trexio_text.c
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HEADER_FILES= trexio.h trexio_text.h trexio_hdf5.h trexio_s.h
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ORG_FILES= templates_front/templator_front.org templates_text/templator_text.org \
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templates_hdf5/templator_hdf5.org
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|
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.PHONY: all fortran clean install
|
||||
.POSIX:
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||||
.SUFFIXES:
|
||||
|
||||
|
||||
all: libtrexio.so fortran
|
||||
|
||||
|
||||
libtrexio.so: $(OBJECT_FILES) $(HEADER_FILES)
|
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$(CC) -shared $(OBJECT_FILES) -o libtrexio.so
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fortran: trexio_f.o
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||||
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||||
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trexio_f.o: libtrexio.so trexio_f.f90
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$(FC) $(FCFLAGS) -c trexio_f.f90 -o trexio_f.o
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|
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cppcheck: cppcheck.out
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||||
cat cppcheck.out
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||||
|
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|
||||
cppcheck.out: $(HEADER_FILES) $(SOURCE_FILES)
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cppcheck --addon=cert -q --error-exitcode=0 \
|
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--enable=warning,performance,portability,missingInclude,information \
|
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--language=c --std=c99 -rp --platform=unix64 \
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$(CPPFLAGS) $(SOURCE_FILES) 2>$@
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trexio.c trexio_f.f90 trexio.h: $(ORG_FILES)
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./build_trexio.sh
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|
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test_c: libtrexio.so test.c
|
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$(CC) $(CPPFLAGS) $(CFLAGS) -Wl,-rpath,$(PWD) -L. test.c -ltrexio $(LDFLAGS) $(LIBS) -o test_c
|
||||
|
||||
|
||||
test_f: libtrexio.so trexio_f.o test.f90
|
||||
$(FC) $(CPPFLAGS) $(FCFLAGS) -Wl,-rpath,$(PWD) -L. test.f90 trexio_f.o -ltrexio $(LDFLAGS) $(LIBS) -o test_f
|
||||
|
||||
|
||||
check: test_c test_f
|
||||
$(RM) -r trexio_test
|
||||
$(RM) -r trexio_test_fort
|
||||
./test_c
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||||
./test_f
|
||||
|
||||
# $(DESTDIR) is needed for future support of package managers
|
||||
# install should avoid build target due to possible conflict when prefix overriden
|
||||
install:
|
||||
$(INSTALL) -d $(DESTDIR)$(libdir) $(DESTDIR)$(includedir)
|
||||
cp libtrexio.so $(DESTDIR)$(libdir)
|
||||
cp trexio*.h $(DESTDIR)$(includedir)
|
||||
|
||||
|
||||
clean:
|
||||
$(RM) *.o libtrexio.so test_*.h5 test_f test_c
|
||||
$(RM) -r trexio_test/ trexio_test_fort/
|
||||
|
||||
|
||||
%.o: %.c $(HEADER_FILES)
|
||||
$(CC) $(CPPFLAGS) $(CFLAGS) -c $*.c -o $*.o
|
||||
|
||||
|
||||
Makefile: Makefile.in ../config.status
|
||||
cd .. && ./config.status src/$@
|
||||
|
||||
|
||||
../config.status: ../configure
|
||||
cd .. && ./config.status --recheck
|
||||
|
||||
@ -402,7 +402,7 @@ struct trexio_back_end_s {
|
||||
These names are populated by the generator.py (i.e. they are hard-coded), which is why the user
|
||||
should tend to avoid renaming the ~.txt~ data files.
|
||||
|
||||
#+begin_src c :tangle prefix_front.h
|
||||
#+begin_src c :tangle prefix_front.h :exports none
|
||||
trexio_t* trexio_open(const char* file_name, const char mode, const back_end_t back_end);
|
||||
#+end_src
|
||||
|
||||
@ -530,7 +530,7 @@ end interface
|
||||
output:
|
||||
~trexio_exit_code~ exit code.
|
||||
|
||||
#+begin_src c :tangle prefix_front.h
|
||||
#+begin_src c :tangle prefix_front.h :exports none
|
||||
trexio_exit_code trexio_close(trexio_t* file);
|
||||
#+end_src
|
||||
|
||||
|
||||
Loading…
Reference in New Issue
Block a user