mirror of
https://github.com/TREX-CoE/trexio.git
synced 2024-07-22 10:47:43 +02:00
Added json in trexio.h
This commit is contained in:
parent
49462add49
commit
6ff3fdfae0
@ -1,6 +1,5 @@
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const TREXIO_H: &str = "../../include/trexio.h";
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const WRAPPER_H: &str = "wrapper.h";
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const JSON_FILE: &str = "../../trex.json";
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const GENERATED_RS: &str = "src/generated.rs";
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use std::env;
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@ -15,7 +14,7 @@ use std::path::Path;
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/// Checks that the version specified in the Cargo.toml file is consistent with the version of the TREXIO C library.
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fn check_version(bindings: PathBuf) -> Result<(), String> {
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fn check_version(bindings: &PathBuf) -> Result<(), String> {
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// Read version from Cargo.toml
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let mut rust_version = String::new();
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{
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@ -629,12 +628,27 @@ pub fn write_{group_l}_{element_l}(&self, offset: usize, data: &[{typ}]) -> Resu
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/// Reads the JSON file, processes its contents, and generates Rust functions according to the specifications in the JSON data.
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fn make_functions() -> std::io::Result<()> {
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let json_file = Path::new(JSON_FILE);
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let generated_rs = Path::new(GENERATED_RS);
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let data: Value = serde_json::from_reader(File::open(&json_file)?)?;
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fn make_functions(bindings: &PathBuf) -> std::io::Result<()> {
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let file = File::open(bindings)?;
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let reader = io::BufReader::new(file);
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let mut json_file = String::new();
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for line in reader.lines() {
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let line = line?;
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if line.contains("trexio_json") {
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let index_start = match line.find('{') {
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Some(x) => x,
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_ => panic!("trexio_json not found"),
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};
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json_file = line[index_start..line.len()-5]
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.replace(r#"\""#,"\"")
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.replace(r#"\n"#,"\n")
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.replace(r#"\t"#,"");
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eprintln!("{}", json_file);
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break;
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}
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}
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let data: Value = serde_json::from_str(&json_file).unwrap();
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let mut r: Vec<String> = vec![
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String::from("
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use std::ffi::CString;
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@ -655,6 +669,7 @@ impl File {
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r.push(String::from("}"));
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let generated_rs = Path::new(GENERATED_RS);
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let mut f = File::create(&generated_rs)?;
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f.write_all(r.join("\n").as_bytes())?;
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Ok(())
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@ -665,9 +680,6 @@ impl File {
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fn main() {
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make_interface().unwrap();
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make_functions().unwrap();
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// Tell cargo to look for shared libraries in the specified directory
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println!("cargo:rustc-link-search=/usr/local/lib");
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@ -676,7 +688,6 @@ fn main() {
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// Tell cargo to invalidate the built crate whenever the wrapper changes
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println!("cargo:rerun-if-changed=wrapper.h");
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println!("cargo:rerun-if-changed=build.py");
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// The bindgen::Builder is the main entry point
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// to bindgen, and lets you build up options for
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@ -695,8 +706,12 @@ fn main() {
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// Write the bindings to the $OUT_DIR/bindings.rs file.
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let out_path = PathBuf::from(env::var("OUT_DIR").unwrap());
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let bindings_path = out_path.join("bindings.rs");
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bindings
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.write_to_file(out_path.join("bindings.rs"))
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.write_to_file(&bindings_path)
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.expect("Couldn't write bindings!");
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check_version(out_path.join("bindings.rs")).unwrap();
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check_version(&bindings_path).unwrap();
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make_interface().unwrap();
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make_functions(&bindings_path).unwrap();
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}
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@ -20,6 +20,257 @@
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** C
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We include in thr trexio.h file a text variable that contains the
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contents of the ~trex.json~ confguration file, generated from the
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~trex.org~ file.
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#+NAME: trex_json
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#+begin_src python :results drawer
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res = "static const char* trexio_json = "
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with open('../../trex.json','r') as f:
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for line in f:
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res += " \" " + line.rstrip().replace('"', '\\"') + "\\n\"\n"
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res += ";\n"
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return res
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#+end_src
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#+RESULTS: trex_json
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:results:
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" {\n"
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" \n"
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" \"metadata\": {\n"
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" \"code_num\" : [ \"dim\", [] ]\n"
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" , \"code\" : [ \"str\", [ \"metadata.code_num\" ] ]\n"
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" , \"author_num\" : [ \"dim\", [] ]\n"
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" , \"author\" : [ \"str\", [ \"metadata.author_num\" ] ]\n"
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" , \"package_version\" : [ \"str\", [] ]\n"
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" , \"description\" : [ \"str\", [] ]\n"
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" , \"unsafe\" : [ \"int\", [] ]\n"
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" } ,\n"
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" \n"
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" \"nucleus\": {\n"
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" \"num\" : [ \"dim\" , [] ]\n"
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" , \"charge\" : [ \"float\", [ \"nucleus.num\" ] ]\n"
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" , \"coord\" : [ \"float\", [ \"nucleus.num\", \"3\" ] ]\n"
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" , \"label\" : [ \"str\" , [ \"nucleus.num\" ] ]\n"
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" , \"point_group\" : [ \"str\" , [] ]\n"
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" , \"repulsion\" : [ \"float\", [] ]\n"
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" } ,\n"
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" \n"
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" \"cell\": {\n"
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" \"a\" : [ \"float\", [ \"3\" ] ]\n"
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" , \"b\" : [ \"float\", [ \"3\" ] ]\n"
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" , \"c\" : [ \"float\", [ \"3\" ] ]\n"
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" , \"G_a\" : [ \"float\", [ \"3\" ] ]\n"
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" , \"G_b\" : [ \"float\", [ \"3\" ] ]\n"
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" , \"G_c\" : [ \"float\", [ \"3\" ] ]\n"
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" , \"two_pi\" : [ \"int\" , [] ]\n"
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" } ,\n"
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" \n"
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" \"pbc\": {\n"
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" \"periodic\" : [ \"int\" , [] ]\n"
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" , \"k_point\" : [ \"float\", [ \"3\" ] ]\n"
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" } ,\n"
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" \n"
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" \"electron\": {\n"
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" \"num\" : [ \"dim\", [] ]\n"
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" , \"up_num\" : [ \"int\", [] ]\n"
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" , \"dn_num\" : [ \"int\", [] ]\n"
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" } ,\n"
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" \n"
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" \"state\": {\n"
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" \"num\" : [ \"dim\" , [] ]\n"
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" , \"id\" : [ \"index\", [] ]\n"
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" , \"energy\" : [ \"float\", [] ]\n"
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" , \"current_label\" : [ \"str\" , [] ]\n"
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" , \"label\" : [ \"str\" , [ \"state.num\" ] ]\n"
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" , \"file_name\" : [ \"str\" , [ \"state.num\" ] ]\n"
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" } ,\n"
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" \n"
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" \"basis\": {\n"
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" \"type\" : [ \"str\" , [] ]\n"
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" , \"prim_num\" : [ \"dim\" , [] ]\n"
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" , \"shell_num\" : [ \"dim\" , [] ]\n"
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" , \"nao_grid_num\" : [ \"dim\" , [] ]\n"
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" , \"interp_coeff_cnt\" : [ \"dim\" , [] ]\n"
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" , \"nucleus_index\" : [ \"index\", [ \"basis.shell_num\" ] ]\n"
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" , \"shell_ang_mom\" : [ \"int\" , [ \"basis.shell_num\" ] ]\n"
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" , \"shell_factor\" : [ \"float\", [ \"basis.shell_num\" ] ]\n"
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" , \"r_power\" : [ \"int\" , [ \"basis.shell_num\" ] ]\n"
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" , \"nao_grid_start\" : [ \"index\", [ \"basis.shell_num\" ] ]\n"
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" , \"nao_grid_size\" : [ \"dim\" , [ \"basis.shell_num\" ] ]\n"
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" , \"shell_index\" : [ \"index\", [ \"basis.prim_num\" ] ]\n"
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" , \"exponent\" : [ \"float\", [ \"basis.prim_num\" ] ]\n"
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" , \"coefficient\" : [ \"float\", [ \"basis.prim_num\" ] ]\n"
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" , \"prim_factor\" : [ \"float\", [ \"basis.prim_num\" ] ]\n"
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" , \"e_cut\" : [ \"float\", [] ]\n"
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" , \"nao_grid_radius\" : [ \"float\", [ \"basis.nao_grid_num\" ] ]\n"
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" , \"nao_grid_phi\" : [ \"float\", [ \"basis.nao_grid_num\" ] ]\n"
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" , \"nao_grid_grad\" : [ \"float\", [ \"basis.nao_grid_num\" ] ]\n"
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" , \"nao_grid_lap\" : [ \"float\", [ \"basis.nao_grid_num\" ] ]\n"
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" , \"interpolator_kind\" : [ \"str\" , [] ]\n"
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" , \"interpolator_phi\" : [ \"float\", [ \"basis.nao_grid_num\", \"basis.interp_coeff_cnt\" ] ]\n"
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" , \"interpolator_grad\" : [ \"float\", [ \"basis.nao_grid_num\", \"basis.interp_coeff_cnt\" ] ]\n"
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" , \"interpolator_lap\" : [ \"float\", [ \"basis.nao_grid_num\", \"basis.interp_coeff_cnt\" ] ]\n"
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" } ,\n"
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" \n"
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" \"ecp\": {\n"
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" \"max_ang_mom_plus_1\" : [ \"int\" , [ \"nucleus.num\" ] ]\n"
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" , \"z_core\" : [ \"int\" , [ \"nucleus.num\" ] ]\n"
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" , \"num\" : [ \"dim\" , [] ]\n"
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" , \"ang_mom\" : [ \"int\" , [ \"ecp.num\" ] ]\n"
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" , \"nucleus_index\" : [ \"index\", [ \"ecp.num\" ] ]\n"
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" , \"exponent\" : [ \"float\", [ \"ecp.num\" ] ]\n"
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" , \"coefficient\" : [ \"float\", [ \"ecp.num\" ] ]\n"
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" , \"power\" : [ \"int\" , [ \"ecp.num\" ] ]\n"
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" } ,\n"
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" \n"
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" \"grid\": {\n"
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" \"description\" : [ \"str\" , [] ]\n"
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" , \"rad_precision\" : [ \"float\", [] ]\n"
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" , \"num\" : [ \"dim\" , [] ]\n"
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" , \"max_ang_num\" : [ \"int\" , [] ]\n"
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" , \"min_ang_num\" : [ \"int\" , [] ]\n"
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" , \"coord\" : [ \"float\", [ \"grid.num\" ] ]\n"
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" , \"weight\" : [ \"float\", [ \"grid.num\" ] ]\n"
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" , \"ang_num\" : [ \"dim\" , [] ]\n"
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" , \"ang_coord\" : [ \"float\", [ \"grid.ang_num\" ] ]\n"
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" , \"ang_weight\" : [ \"float\", [ \"grid.ang_num\" ] ]\n"
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" , \"rad_num\" : [ \"dim\" , [] ]\n"
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" , \"rad_coord\" : [ \"float\", [ \"grid.rad_num\" ] ]\n"
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" , \"rad_weight\" : [ \"float\", [ \"grid.rad_num\" ] ]\n"
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" } ,\n"
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" \n"
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" \"ao\": {\n"
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" \"cartesian\" : [ \"int\" , [] ]\n"
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" , \"num\" : [ \"dim\" , [] ]\n"
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" , \"shell\" : [ \"index\", [ \"ao.num\" ] ]\n"
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" , \"normalization\" : [ \"float\", [ \"ao.num\" ] ]\n"
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" } ,\n"
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" \n"
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" \"ao_1e_int\": {\n"
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" \"overlap\" : [ \"float\", [ \"ao.num\", \"ao.num\" ] ]\n"
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" , \"kinetic\" : [ \"float\", [ \"ao.num\", \"ao.num\" ] ]\n"
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" , \"potential_n_e\" : [ \"float\", [ \"ao.num\", \"ao.num\" ] ]\n"
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" , \"ecp\" : [ \"float\", [ \"ao.num\", \"ao.num\" ] ]\n"
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" , \"core_hamiltonian\" : [ \"float\", [ \"ao.num\", \"ao.num\" ] ]\n"
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" , \"overlap_im\" : [ \"float\", [ \"ao.num\", \"ao.num\" ] ]\n"
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" , \"kinetic_im\" : [ \"float\", [ \"ao.num\", \"ao.num\" ] ]\n"
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" , \"potential_n_e_im\" : [ \"float\", [ \"ao.num\", \"ao.num\" ] ]\n"
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" , \"ecp_im\" : [ \"float\", [ \"ao.num\", \"ao.num\" ] ]\n"
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" , \"core_hamiltonian_im\" : [ \"float\", [ \"ao.num\", \"ao.num\" ] ]\n"
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" } ,\n"
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" \n"
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" \"ao_2e_int\": {\n"
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" \"eri\" : [ \"float sparse\", [ \"ao.num\", \"ao.num\", \"ao.num\", \"ao.num\" ] ]\n"
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" , \"eri_lr\" : [ \"float sparse\", [ \"ao.num\", \"ao.num\", \"ao.num\", \"ao.num\" ] ]\n"
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" , \"eri_cholesky_num\" : [ \"dim\" , [] ]\n"
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" , \"eri_cholesky\" : [ \"float sparse\", [ \"ao_2e_int.eri_cholesky_num\", \"ao.num\", \"ao.num\" ] ]\n"
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" , \"eri_lr_cholesky_num\" : [ \"dim\" , [] ]\n"
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" , \"eri_lr_cholesky\" : [ \"float sparse\", [ \"ao_2e_int.eri_lr_cholesky_num\", \"ao.num\", \"ao.num\" ] ]\n"
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" } ,\n"
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" \n"
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" \"mo\": {\n"
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" \"type\" : [ \"str\" , [] ]\n"
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" , \"num\" : [ \"dim\" , [] ]\n"
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" , \"coefficient\" : [ \"float\", [ \"mo.num\", \"ao.num\" ] ]\n"
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" , \"coefficient_im\" : [ \"float\", [ \"mo.num\", \"ao.num\" ] ]\n"
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" , \"class\" : [ \"str\" , [ \"mo.num\" ] ]\n"
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" , \"symmetry\" : [ \"str\" , [ \"mo.num\" ] ]\n"
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" , \"occupation\" : [ \"float\", [ \"mo.num\" ] ]\n"
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" , \"energy\" : [ \"float\", [ \"mo.num\" ] ]\n"
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" , \"spin\" : [ \"int\" , [ \"mo.num\" ] ]\n"
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" } ,\n"
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" \n"
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" \"mo_1e_int\": {\n"
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" \"overlap\" : [ \"float\", [ \"mo.num\", \"mo.num\" ] ]\n"
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" , \"kinetic\" : [ \"float\", [ \"mo.num\", \"mo.num\" ] ]\n"
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" , \"potential_n_e\" : [ \"float\", [ \"mo.num\", \"mo.num\" ] ]\n"
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" , \"ecp\" : [ \"float\", [ \"mo.num\", \"mo.num\" ] ]\n"
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" , \"core_hamiltonian\" : [ \"float\", [ \"mo.num\", \"mo.num\" ] ]\n"
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" , \"overlap_im\" : [ \"float\", [ \"mo.num\", \"mo.num\" ] ]\n"
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" , \"kinetic_im\" : [ \"float\", [ \"mo.num\", \"mo.num\" ] ]\n"
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" , \"potential_n_e_im\" : [ \"float\", [ \"mo.num\", \"mo.num\" ] ]\n"
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" , \"ecp_im\" : [ \"float\", [ \"mo.num\", \"mo.num\" ] ]\n"
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" , \"core_hamiltonian_im\" : [ \"float\", [ \"mo.num\", \"mo.num\" ] ]\n"
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" } ,\n"
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" \n"
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" \"mo_2e_int\": {\n"
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" \"eri\" : [ \"float sparse\", [ \"mo.num\", \"mo.num\", \"mo.num\", \"mo.num\" ] ]\n"
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" , \"eri_lr\" : [ \"float sparse\", [ \"mo.num\", \"mo.num\", \"mo.num\", \"mo.num\" ] ]\n"
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" , \"eri_cholesky_num\" : [ \"dim\" , [] ]\n"
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" , \"eri_cholesky\" : [ \"float sparse\", [ \"mo_2e_int.eri_cholesky_num\", \"mo.num\", \"mo.num\" ] ]\n"
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" , \"eri_lr_cholesky_num\" : [ \"dim\" , [] ]\n"
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" , \"eri_lr_cholesky\" : [ \"float sparse\", [ \"mo_2e_int.eri_lr_cholesky_num\", \"mo.num\", \"mo.num\" ] ]\n"
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" } ,\n"
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" \n"
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" \"determinant\": {\n"
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" \"num\" : [ \"dim readonly\" , [] ]\n"
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" , \"list\" : [ \"int special\" , [ \"determinant.num\" ] ]\n"
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" , \"coefficient\" : [ \"float buffered\", [ \"determinant.num\" ] ]\n"
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" } ,\n"
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" \n"
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" \"csf\": {\n"
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" \"num\" : [ \"dim readonly\" , [] ]\n"
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" , \"coefficient\" : [ \"float buffered\", [ \"csf.num\" ] ]\n"
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" , \"det_coefficient\" : [ \"float sparse\" , [ \"csf.num\", \"determinant.num\" ] ]\n"
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" } ,\n"
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" \n"
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" \"amplitude\": {\n"
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" \"single\" : [ \"float sparse\", [ \"mo.num\", \"mo.num\" ] ]\n"
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" , \"single_exp\" : [ \"float sparse\", [ \"mo.num\", \"mo.num\" ] ]\n"
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" , \"double\" : [ \"float sparse\", [ \"mo.num\", \"mo.num\", \"mo.num\", \"mo.num\" ] ]\n"
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" , \"double_exp\" : [ \"float sparse\", [ \"mo.num\", \"mo.num\", \"mo.num\", \"mo.num\" ] ]\n"
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" , \"triple\" : [ \"float sparse\", [ \"mo.num\", \"mo.num\", \"mo.num\", \"mo.num\", \"mo.num\", \"mo.num\" ] ]\n"
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" , \"triple_exp\" : [ \"float sparse\", [ \"mo.num\", \"mo.num\", \"mo.num\", \"mo.num\", \"mo.num\", \"mo.num\" ] ]\n"
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" , \"quadruple\" : [ \"float sparse\", [ \"mo.num\", \"mo.num\", \"mo.num\", \"mo.num\", \"mo.num\", \"mo.num\", \"mo.num\", \"mo.num\" ] ]\n"
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" , \"quadruple_exp\" : [ \"float sparse\", [ \"mo.num\", \"mo.num\", \"mo.num\", \"mo.num\", \"mo.num\", \"mo.num\", \"mo.num\", \"mo.num\" ] ]\n"
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" } ,\n"
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" \n"
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" \"rdm\": {\n"
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" \"1e\" : [ \"float\" , [ \"mo.num\", \"mo.num\" ] ]\n"
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" , \"1e_up\" : [ \"float\" , [ \"mo.num\", \"mo.num\" ] ]\n"
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" , \"1e_dn\" : [ \"float\" , [ \"mo.num\", \"mo.num\" ] ]\n"
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" , \"2e\" : [ \"float sparse\", [ \"mo.num\", \"mo.num\", \"mo.num\", \"mo.num\" ] ]\n"
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" , \"2e_upup\" : [ \"float sparse\", [ \"mo.num\", \"mo.num\", \"mo.num\", \"mo.num\" ] ]\n"
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" , \"2e_dndn\" : [ \"float sparse\", [ \"mo.num\", \"mo.num\", \"mo.num\", \"mo.num\" ] ]\n"
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" , \"2e_updn\" : [ \"float sparse\", [ \"mo.num\", \"mo.num\", \"mo.num\", \"mo.num\" ] ]\n"
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" , \"2e_cholesky_num\" : [ \"dim\" , [] ]\n"
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" , \"2e_cholesky\" : [ \"float sparse\", [ \"rdm.2e_cholesky_num\", \"mo.num\", \"mo.num\" ] ]\n"
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" , \"2e_upup_cholesky_num\" : [ \"dim\" , [] ]\n"
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" , \"2e_upup_cholesky\" : [ \"float sparse\", [ \"rdm.2e_upup_cholesky_num\", \"mo.num\", \"mo.num\" ] ]\n"
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" , \"2e_dndn_cholesky_num\" : [ \"dim\" , [] ]\n"
|
||||
" , \"2e_dndn_cholesky\" : [ \"float sparse\", [ \"rdm.2e_dndn_cholesky_num\", \"mo.num\", \"mo.num\" ] ]\n"
|
||||
" , \"2e_updn_cholesky_num\" : [ \"dim\" , [] ]\n"
|
||||
" , \"2e_updn_cholesky\" : [ \"float sparse\", [ \"rdm.2e_updn_cholesky_num\", \"mo.num\", \"mo.num\" ] ]\n"
|
||||
" } ,\n"
|
||||
" \n"
|
||||
" \"jastrow\": {\n"
|
||||
" \"type\" : [ \"str\" , [] ]\n"
|
||||
" , \"en_num\" : [ \"dim\" , [] ]\n"
|
||||
" , \"ee_num\" : [ \"dim\" , [] ]\n"
|
||||
" , \"een_num\" : [ \"dim\" , [] ]\n"
|
||||
" , \"en\" : [ \"float\" , [ \"jastrow.en_num\" ] ]\n"
|
||||
" , \"ee\" : [ \"float\" , [ \"jastrow.ee_num\" ] ]\n"
|
||||
" , \"een\" : [ \"float\" , [ \"jastrow.een_num\" ] ]\n"
|
||||
" , \"en_nucleus\" : [ \"index\" , [ \"jastrow.en_num\" ] ]\n"
|
||||
" , \"een_nucleus\" : [ \"index\" , [ \"jastrow.een_num\" ] ]\n"
|
||||
" , \"ee_scaling\" : [ \"float\" , [] ]\n"
|
||||
" , \"en_scaling\" : [ \"float\" , [ \"nucleus.num\" ] ]\n"
|
||||
" } ,\n"
|
||||
" \n"
|
||||
" \"qmc\": {\n"
|
||||
" \"num\" : [ \"dim\" , [] ]\n"
|
||||
" , \"point\" : [ \"float\", [ \"qmc.num\", \"electron.num\", \"3\" ] ]\n"
|
||||
" , \"psi\" : [ \"float\", [ \"qmc.num\" ] ]\n"
|
||||
" , \"e_loc\" : [ \"float\", [ \"qmc.num\" ] ]\n"
|
||||
" }\n"
|
||||
" \n"
|
||||
" }\n"
|
||||
;
|
||||
:end:
|
||||
|
||||
|
||||
#+begin_src c :tangle prefix_front.h :noweb yes
|
||||
<<header>>
|
||||
#ifndef TREXIO_H
|
||||
@ -32,6 +283,7 @@ extern "C" {
|
||||
#include <stdbool.h>
|
||||
#include <stdint.h>
|
||||
|
||||
<<trex_json()>>
|
||||
typedef int32_t trexio_exit_code;
|
||||
#+end_src
|
||||
|
||||
|
||||
Loading…
Reference in New Issue
Block a user