diff --git a/README.html b/README.html index e89e58a..cf97f39 100644 --- a/README.html +++ b/README.html @@ -3,7 +3,7 @@ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"> - + TREXIO source code documentation @@ -341,7 +341,7 @@ and bug reports should be submitted at

Author: TREX-CoE

-

Created: 2021-05-06 Thu 17:41

+

Created: 2021-05-06 Thu 17:57

Validate

diff --git a/index.html b/index.html index e89e58a..cf97f39 100644 --- a/index.html +++ b/index.html @@ -3,7 +3,7 @@ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"> - + TREXIO source code documentation @@ -341,7 +341,7 @@ and bug reports should be submitted at

Author: TREX-CoE

-

Created: 2021-05-06 Thu 17:41

+

Created: 2021-05-06 Thu 17:57

Validate

diff --git a/templator_front.html b/templator_front.html index 820fd05..06706eb 100644 --- a/templator_front.html +++ b/templator_front.html @@ -3,7 +3,7 @@ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"> - + ‎ @@ -310,39 +310,39 @@ for the JavaScript code in this tag.

Table of Contents

@@ -350,8 +350,8 @@ for the JavaScript code in this tag. d+TITLE: Front end API

-
-

1 Coding conventions

+
+

1 Coding conventions

  • integer types will be defined using types given in stdint.h
    • @@ -366,8 +366,8 @@ d+TITLE: Front end API
-
-

1.1 Memory allocation

+
+

1.1 Memory allocation

Memory allocation of structures can be facilitated by using the @@ -401,8 +401,8 @@ The maximum string size for the filenames is 4096 characters.

-
-

2 Front end

+
+

2 Front end

All calls to TREXIO are thread-safe. @@ -410,10 +410,10 @@ TREXIO front end is modular, which simplifies implementation of new back ends.

-
-

2.1 Error handling

+
+

2.1 Error handling

- +
@@ -512,13 +512,13 @@ TREXIO front end is modular, which simplifies implementation of new back ends. - + - + @@ -640,10 +640,10 @@ The text strings are extracted from the previous table. return"Element absent"; break; case TREXIO_INVALID_NUM: - return"Invalid exit code"; + return"Invalid dimensions"; break; case TREXIO_NUM_ALREADY_EXISTS: - return"This variable already exists"; + return"Variable already exists"; break; case TREXIO_OPEN_ERROR: return"Error opening file"; @@ -695,8 +695,8 @@ The text strings are extracted from the previous table. -
-

2.2 Back ends

+
+

2.2 Back ends

TREXIO has several back ends: @@ -726,8 +726,8 @@ lines that correspond to the TREXIO_JSON back end (not implemented

-
-

2.3 Read/write behavior

+
+

2.3 Read/write behavior

Every time a reading function is called, the data is read from the @@ -755,8 +755,8 @@ concurrent programs, the behavior is not specified.

-
-

2.4 TREXIO file type

+
+

2.4 TREXIO file type

trexio_s is the the main type for TREXIO files, visible to the users @@ -788,8 +788,8 @@ TREXIO files will have as a first argument the TREXIO file handle.

-
-

2.5 Polymorphism of the file handle

+
+

2.5 Polymorphism of the file handle

Polymorphism of the trexio_t type is handled by ensuring that the @@ -808,8 +808,8 @@ corresponding types for all back ends can be safely casted to

-
-

2.6 File opening

+
+

2.6 File opening

trexio_open creates a new TREXIO file or opens existing one. @@ -971,8 +971,8 @@ should tend to avoid renaming the .txt data files.

-
-

2.7 File closing

+
+

2.7 File closing

trexio_close closes an existing trexio_t file. @@ -1071,8 +1071,8 @@ output:

-
-

3 Templates for front end

+
+

3 Templates for front end

Consider the following block of trex.json: @@ -1233,8 +1233,8 @@ TREXIO supports I/O with single or double precision for integer and floating poi

-
-

3.1 Templates for front end has/read/write a dimension

+
+

3.1 Templates for front end has/read/write a dimension

This section concerns API calls related to dimensioning variables. @@ -1303,8 +1303,8 @@ This section concerns API calls related to dimensioning variables.

TREXIO_INVALID_NUM 12'Invalid exit code''Invalid dimensions'
TREXIO_NUM_ALREADY_EXISTS 13'This variable already exists''Variable already exists'
-
-

3.1.1 C templates for front end

+
+

3.1.1 C templates for front end

The C templates that correspond to each of the abovementioned functions can be found below. @@ -1493,8 +1493,8 @@ The basic (non-suffixed) API call on dimensioning variables deals with single pr

-
-

3.1.2 Fortran templates for front end

+
+

3.1.2 Fortran templates for front end

The Fortran templates that provide an access to the C API calls from Fortran. @@ -1580,8 +1580,8 @@ These templates are based on the use of iso_c_binding. Pointers hav

-
-

3.2 Templates for front end has/read/write a dataset

+
+

3.2 Templates for front end has/read/write a dataset

This section concerns API calls related to datasets. @@ -1650,8 +1650,8 @@ This section concerns API calls related to datasets.

-
-

3.2.1 C templates for front end

+
+

3.2.1 C templates for front end

The C templates that correspond to each of the abovementioned functions can be found below. @@ -1909,8 +1909,8 @@ The basic (non-suffixed) API call on datasets deals with double precision (see T

-
-

3.2.2 Fortran templates for front end

+
+

3.2.2 Fortran templates for front end

The Fortran templates that provide an access to the C API calls from Fortran. @@ -1997,8 +1997,8 @@ These templates are based on the use of iso_c_binding. Pointers hav

-
-

4 Fortran helper/wrapper functions

+
+

4 Fortran helper/wrapper functions

The function below adapts the original C-based trexio_open for Fortran. @@ -2027,7 +2027,7 @@ Note, that Fortran interface calls the main TREXIO API, which is wr

Author: TREX-CoE

-

Created: 2021-05-06 Thu 17:41

+

Created: 2021-05-06 Thu 17:57

Validate

diff --git a/templator_hdf5.html b/templator_hdf5.html index d1adcb1..8c2d42e 100644 --- a/templator_hdf5.html +++ b/templator_hdf5.html @@ -3,7 +3,7 @@ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"> - + HDF5 back end @@ -311,25 +311,25 @@ for the JavaScript code in this tag.

Table of Contents

-
-

1 HDF5 back end

+
+

1 HDF5 back end

-
-

1.1 Template for HDF5 definitions

+
+

1.1 Template for HDF5 definitions

#define $GROUP$_GROUP_NAME          "$group$"
@@ -340,8 +340,8 @@ for the JavaScript code in this tag.
-
-

1.2 Template for HDF5 structures

+
+

1.2 Template for HDF5 structures

typedef struct trexio_hdf5_s {
@@ -356,8 +356,8 @@ for the JavaScript code in this tag.
-
-

1.3 Template for HDF5 init/deinit

+
+

1.3 Template for HDF5 init/deinit

trexio_exit_code
@@ -440,8 +440,8 @@ for the JavaScript code in this tag.
-
-

1.4 Template for HDF5 has/read/write a number

+
+

1.4 Template for HDF5 has/read/write a number

trexio_exit_code
@@ -563,8 +563,8 @@ for the JavaScript code in this tag.
-
-

1.5 Template for HDF5 has/read/write a dataset

+
+

1.5 Template for HDF5 has/read/write a dataset

trexio_exit_code
@@ -698,7 +698,7 @@ for the JavaScript code in this tag.

Author: TREX-CoE

-

Created: 2021-05-06 Thu 17:41

+

Created: 2021-05-06 Thu 17:57

Validate

diff --git a/templator_text.html b/templator_text.html index 3331f7a..3a99802 100644 --- a/templator_text.html +++ b/templator_text.html @@ -3,7 +3,7 @@ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"> - + TEXT back end @@ -311,24 +311,24 @@ for the JavaScript code in this tag.

Table of Contents

-
-

1 TEXT back end

+
+

1 TEXT back end

The "file" produced by the text back end is a directory with one @@ -359,8 +359,8 @@ The file is written when closed, or when the flush function is called.

-
-

1.1 Template for group-related structures in text back end

+
+

1.1 Template for group-related structures in text back end

typedef struct $group$_s {
@@ -376,8 +376,8 @@ The file is written when closed, or when the flush function is called.
-
-

1.2 Template for general structure in text back end

+
+

1.2 Template for general structure in text back end

typedef struct rdm_s {
@@ -403,8 +403,8 @@ The file is written when closed, or when the flush function is called.
-
-

1.3 Initialize function (constant part)

+
+

1.3 Initialize function (constant part)

trexio_exit_code
@@ -509,8 +509,8 @@ The file is written when closed, or when the flush function is called.
-
-

1.4 Deinitialize function (templated part)

+
+

1.4 Deinitialize function (templated part)

trexio_exit_code
@@ -534,8 +534,8 @@ The file is written when closed, or when the flush function is called.
-
-

1.5 Template for text read struct

+
+

1.5 Template for text read struct

$group$_t*
@@ -706,8 +706,8 @@ trexio_text_read_$group$ (trexio_text_t*
-
-

1.6 Template for text flush struct

+
+

1.6 Template for text flush struct

trexio_exit_code
@@ -766,8 +766,8 @@ trexio_text_read_$group$ (trexio_text_t*
-
-

1.7 Template for text free memory

+
+

1.7 Template for text free memory

Memory is allocated when reading. The following function frees memory. @@ -803,8 +803,8 @@ Memory is allocated when reading. The following function frees memory.

-
-

1.8 Template for has/read/write the $group_num$ attribute

+
+

1.8 Template for has/read/write the $group_num$ attribute

trexio_exit_code
@@ -866,8 +866,8 @@ Memory is allocated when reading. The following function frees memory.
-
-

1.9 Template for has/read/write the $group_dset$ dataset

+
+

1.9 Template for has/read/write the $group_dset$ dataset

The group_dset array is assumed allocated with the appropriate size. @@ -964,12 +964,12 @@ The group_dset array is assumed allocated with the appropriate size

-
-

1.10 RDM struct (hard-coded)

+
+

1.10 RDM struct (hard-coded)

-
-

1.10.1 Read the complete struct

+
+

1.10.1 Read the complete struct

rdm_t* trexio_text_read_rdm(trexio_text_t* const file);
@@ -1064,8 +1064,8 @@ The group_dset array is assumed allocated with the appropriate size
-
-

1.10.2 Flush the complete struct

+
+

1.10.2 Flush the complete struct

trexio_exit_code trexio_text_flush_rdm(trexio_text_t* const file);
@@ -1108,8 +1108,8 @@ The group_dset array is assumed allocated with the appropriate size
-
-

1.10.3 Free memory

+
+

1.10.3 Free memory

Memory is allocated when reading. The followig function frees memory. @@ -1145,8 +1145,8 @@ Memory is allocated when reading. The followig function frees memory.

-
-

1.10.4 Read/Write the onee attribute

+
+

1.10.4 Read/Write the onee attribute

The one_e array is assumed allocated with the appropriate size. @@ -1212,8 +1212,8 @@ The one_e array is assumed allocated with the appropriate size.

-
-

1.10.5 Read/Write the twoe attribute

+
+

1.10.5 Read/Write the twoe attribute

two_e is a sparse data structure, which can be too large to fit @@ -1321,7 +1321,7 @@ file for each sparse float structure.

Author: TREX-CoE

-

Created: 2021-05-06 Thu 17:41

+

Created: 2021-05-06 Thu 17:57

Validate