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@ -3,7 +3,7 @@
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"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
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<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
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<head>
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<!-- 2021-06-14 Mon 07:35 -->
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<!-- 2021-06-15 Tue 10:12 -->
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<meta http-equiv="Content-Type" content="text/html;charset=utf-8" />
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<meta name="viewport" content="width=device-width, initial-scale=1" />
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<title>TREXIO source code documentation</title>
|
||||
@ -341,7 +341,7 @@ and bug reports should be submitted at
|
||||
</div>
|
||||
<div id="postamble" class="status">
|
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<p class="author">Author: TREX-CoE</p>
|
||||
<p class="date">Created: 2021-06-14 Mon 07:35</p>
|
||||
<p class="date">Created: 2021-06-15 Tue 10:12</p>
|
||||
<p class="validation"><a href="http://validator.w3.org/check?uri=referer">Validate</a></p>
|
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</div>
|
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</body>
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@ -3,7 +3,7 @@
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"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
|
||||
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
|
||||
<head>
|
||||
<!-- 2021-06-14 Mon 07:35 -->
|
||||
<!-- 2021-06-15 Tue 10:12 -->
|
||||
<meta http-equiv="Content-Type" content="text/html;charset=utf-8" />
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1" />
|
||||
<title>TREXIO source code documentation</title>
|
||||
@ -341,7 +341,7 @@ and bug reports should be submitted at
|
||||
</div>
|
||||
<div id="postamble" class="status">
|
||||
<p class="author">Author: TREX-CoE</p>
|
||||
<p class="date">Created: 2021-06-14 Mon 07:35</p>
|
||||
<p class="date">Created: 2021-06-15 Tue 10:12</p>
|
||||
<p class="validation"><a href="http://validator.w3.org/check?uri=referer">Validate</a></p>
|
||||
</div>
|
||||
</body>
|
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File diff suppressed because it is too large
Load Diff
@ -3,7 +3,7 @@
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"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
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<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
|
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<head>
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<!-- 2021-06-14 Mon 07:35 -->
|
||||
<!-- 2021-06-15 Tue 10:12 -->
|
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<meta http-equiv="Content-Type" content="text/html;charset=utf-8" />
|
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<meta name="viewport" content="width=device-width, initial-scale=1" />
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<title>HDF5 back end</title>
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@ -311,37 +311,40 @@ for the JavaScript code in this tag.
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<h2>Table of Contents</h2>
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||||
<div id="text-table-of-contents">
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<ul>
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<li><a href="#orga8a34d8">1. HDF5 back end</a>
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<li><a href="#orgd363f8a">1. HDF5 back end</a>
|
||||
<ul>
|
||||
<li><a href="#orgf949109">1.1. Template for HDF5 definitions</a></li>
|
||||
<li><a href="#orgd6c384f">1.2. Template for HDF5 structures</a></li>
|
||||
<li><a href="#org99fd15d">1.3. Template for HDF5 init/deinit</a></li>
|
||||
<li><a href="#orgd1fbc7e">1.4. Template for HDF5 has/read/write a number</a></li>
|
||||
<li><a href="#org0fcce08">1.5. Template for HDF5 has/read/write a dataset</a></li>
|
||||
<li><a href="#org4eea63e">1.1. Template for HDF5 definitions</a></li>
|
||||
<li><a href="#orge99b28c">1.2. Template for HDF5 structures</a></li>
|
||||
<li><a href="#orgada9fbb">1.3. Template for HDF5 init/deinit</a></li>
|
||||
<li><a href="#org91f62f6">1.4. Template for HDF5 has/read/write a single dimensioning variable</a></li>
|
||||
<li><a href="#org478cb2d">1.5. Template for HDF5 has/read/write a dataset of numerical data</a></li>
|
||||
<li><a href="#org012e6e6">1.6. Template for HDF5 has/read/write a dataset of strings</a></li>
|
||||
<li><a href="#org4187fef">1.7. Template for HDF5 has/read/write a single string attribute</a></li>
|
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</ul>
|
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</li>
|
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</ul>
|
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</div>
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</div>
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<div id="outline-container-orga8a34d8" class="outline-2">
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<h2 id="orga8a34d8"><span class="section-number-2">1</span> HDF5 back end</h2>
|
||||
<div id="outline-container-orgd363f8a" class="outline-2">
|
||||
<h2 id="orgd363f8a"><span class="section-number-2">1</span> HDF5 back end</h2>
|
||||
<div class="outline-text-2" id="text-1">
|
||||
</div>
|
||||
<div id="outline-container-orgf949109" class="outline-3">
|
||||
<h3 id="orgf949109"><span class="section-number-3">1.1</span> Template for HDF5 definitions</h3>
|
||||
<div id="outline-container-org4eea63e" class="outline-3">
|
||||
<h3 id="org4eea63e"><span class="section-number-3">1.1</span> Template for HDF5 definitions</h3>
|
||||
<div class="outline-text-3" id="text-1-1">
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||||
<div class="org-src-container">
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<pre class="src src-c"><span style="color: #483d8b;">#define</span> $GROUP$_GROUP_NAME <span style="color: #8b2252;">"$group$"</span>
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<span style="color: #483d8b;">#define</span> $GROUP_NUM$_NAME <span style="color: #8b2252;">"$group_num$"</span>
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<span style="color: #483d8b;">#define</span> $GROUP_DSET$_NAME <span style="color: #8b2252;">"$group_dset$"</span>
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<span style="color: #483d8b;">#define</span> $GROUP_STR$_NAME <span style="color: #8b2252;">"$group_str$"</span>
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</pre>
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||||
</div>
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</div>
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</div>
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||||
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<div id="outline-container-orgd6c384f" class="outline-3">
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<h3 id="orgd6c384f"><span class="section-number-3">1.2</span> Template for HDF5 structures</h3>
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<div id="outline-container-orge99b28c" class="outline-3">
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<h3 id="orge99b28c"><span class="section-number-3">1.2</span> Template for HDF5 structures</h3>
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<div class="outline-text-3" id="text-1-2">
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<div class="org-src-container">
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<pre class="src src-c"><span style="color: #a020f0;">typedef</span> <span style="color: #a020f0;">struct</span> <span style="color: #228b22;">trexio_hdf5_s</span> {
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@ -356,8 +359,8 @@ for the JavaScript code in this tag.
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</div>
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||||
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||||
|
||||
<div id="outline-container-org99fd15d" class="outline-3">
|
||||
<h3 id="org99fd15d"><span class="section-number-3">1.3</span> Template for HDF5 init/deinit</h3>
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||||
<div id="outline-container-orgada9fbb" class="outline-3">
|
||||
<h3 id="orgada9fbb"><span class="section-number-3">1.3</span> Template for HDF5 init/deinit</h3>
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<div class="outline-text-3" id="text-1-3">
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||||
<div class="org-src-container">
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||||
<pre class="src src-c"><span style="color: #228b22;">trexio_exit_code</span>
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@ -437,8 +440,8 @@ for the JavaScript code in this tag.
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||||
</div>
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||||
</div>
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||||
|
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<div id="outline-container-orgd1fbc7e" class="outline-3">
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<h3 id="orgd1fbc7e"><span class="section-number-3">1.4</span> Template for HDF5 has/read/write a number</h3>
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||||
<div id="outline-container-org91f62f6" class="outline-3">
|
||||
<h3 id="org91f62f6"><span class="section-number-3">1.4</span> Template for HDF5 has/read/write a single dimensioning variable</h3>
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||||
<div class="outline-text-3" id="text-1-4">
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<div class="org-src-container">
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||||
<pre class="src src-c"><span style="color: #228b22;">trexio_exit_code</span>
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@ -452,11 +455,14 @@ for the JavaScript code in this tag.
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/* <span style="color: #b22222;">Quit if the dimensioning attribute is missing in the file </span>*/
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<span style="color: #a020f0;">if</span> (H5Aexists(f->$group$_group, $GROUP_NUM$_NAME) == 0) <span style="color: #a020f0;">return</span> TREXIO_FAILURE;
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/* <span style="color: #b22222;">Read the nucleus_num attribute of nucleus group </span>*/
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/* <span style="color: #b22222;">Read the $group_num$ attribute of $group$ group </span>*/
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<span style="color: #a020f0;">const</span> <span style="color: #228b22;">hid_t</span> <span style="color: #a0522d;">num_id</span> = H5Aopen(f->$group$_group, $GROUP_NUM$_NAME, H5P_DEFAULT);
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<span style="color: #a020f0;">if</span> (num_id <= 0) <span style="color: #a020f0;">return</span> TREXIO_INVALID_ID;
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<span style="color: #a020f0;">const</span> <span style="color: #228b22;">herr_t</span> <span style="color: #a0522d;">status</span> = H5Aread(num_id, H5T_NATIVE_UINT64, num);
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H5Aclose(num_id);
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<span style="color: #a020f0;">if</span> (status < 0) <span style="color: #a020f0;">return</span> TREXIO_FAILURE;
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<span style="color: #a020f0;">return</span> TREXIO_SUCCESS;
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@ -560,13 +566,12 @@ for the JavaScript code in this tag.
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</div>
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</div>
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<div id="outline-container-org0fcce08" class="outline-3">
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<h3 id="org0fcce08"><span class="section-number-3">1.5</span> Template for HDF5 has/read/write a dataset</h3>
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||||
<div id="outline-container-org478cb2d" class="outline-3">
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||||
<h3 id="org478cb2d"><span class="section-number-3">1.5</span> Template for HDF5 has/read/write a dataset of numerical data</h3>
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<div class="outline-text-3" id="text-1-5">
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<div class="org-src-container">
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<pre class="src src-c"><span style="color: #228b22;">trexio_exit_code</span>
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<span style="color: #0000ff;">trexio_hdf5_read_$group_dset$</span> (<span style="color: #228b22;">trexio_t</span>* <span style="color: #a020f0;">const</span> <span style="color: #a0522d;">file</span>, $group_dset_dtype$* <span style="color: #a020f0;">const</span> $group_dset$,
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<span style="color: #a020f0;">const</span> <span style="color: #228b22;">uint32_t</span> <span style="color: #a0522d;">rank</span>, <span style="color: #a020f0;">const</span> <span style="color: #228b22;">uint64_t</span>* <span style="color: #a0522d;">dims</span>)
|
||||
<span style="color: #0000ff;">trexio_hdf5_read_$group_dset$</span> (<span style="color: #228b22;">trexio_t</span>* <span style="color: #a020f0;">const</span> <span style="color: #a0522d;">file</span>, $group_dset_dtype$* <span style="color: #a020f0;">const</span> $group_dset$, <span style="color: #a020f0;">const</span> <span style="color: #228b22;">uint32_t</span> <span style="color: #a0522d;">rank</span>, <span style="color: #a020f0;">const</span> <span style="color: #228b22;">uint64_t</span>* <span style="color: #a0522d;">dims</span>)
|
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{
|
||||
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||||
<span style="color: #a020f0;">if</span> (file == <span style="color: #008b8b;">NULL</span>) <span style="color: #a020f0;">return</span> TREXIO_INVALID_ARG_1;
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||||
@ -596,17 +601,17 @@ for the JavaScript code in this tag.
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|
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H5Dclose(dset_id);
|
||||
<span style="color: #a020f0;">if</span> (status < 0) {
|
||||
free(ddims);
|
||||
FREE(ddims);
|
||||
<span style="color: #a020f0;">return</span> TREXIO_FAILURE;
|
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}
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||||
|
||||
<span style="color: #a020f0;">for</span> (<span style="color: #228b22;">uint32_t</span> <span style="color: #a0522d;">i</span>=0; i<rank; ++i){
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<span style="color: #a020f0;">if</span> (ddims[i] != dims[i]) {
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free(ddims);
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FREE(ddims);
|
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<span style="color: #a020f0;">return</span> TREXIO_INVALID_ARG_4;
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}
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}
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free(ddims);
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FREE(ddims);
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/* <span style="color: #b22222;">High-level H5LT API. No need to deal with dataspaces and datatypes </span>*/
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status = H5LTread_dataset(f->$group$_group,
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@ -622,8 +627,7 @@ for the JavaScript code in this tag.
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<div class="org-src-container">
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<pre class="src src-c"><span style="color: #228b22;">trexio_exit_code</span>
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<span style="color: #0000ff;">trexio_hdf5_write_$group_dset$</span> (<span style="color: #228b22;">trexio_t</span>* <span style="color: #a020f0;">const</span> <span style="color: #a0522d;">file</span>, <span style="color: #a020f0;">const</span> $group_dset_dtype$* $group_dset$,
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<span style="color: #a020f0;">const</span> <span style="color: #228b22;">uint32_t</span> <span style="color: #a0522d;">rank</span>, <span style="color: #a020f0;">const</span> <span style="color: #228b22;">uint64_t</span>* <span style="color: #a0522d;">dims</span>)
|
||||
<span style="color: #0000ff;">trexio_hdf5_write_$group_dset$</span> (<span style="color: #228b22;">trexio_t</span>* <span style="color: #a020f0;">const</span> <span style="color: #a0522d;">file</span>, <span style="color: #a020f0;">const</span> $group_dset_dtype$* $group_dset$, <span style="color: #a020f0;">const</span> <span style="color: #228b22;">uint32_t</span> <span style="color: #a0522d;">rank</span>, <span style="color: #a020f0;">const</span> <span style="color: #228b22;">uint64_t</span>* <span style="color: #a0522d;">dims</span>)
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{
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<span style="color: #a020f0;">if</span> (file == <span style="color: #008b8b;">NULL</span>) <span style="color: #a020f0;">return</span> TREXIO_INVALID_ARG_1;
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@ -686,6 +690,336 @@ for the JavaScript code in this tag.
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<span style="color: #a020f0;">return</span> TREXIO_FAILURE;
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}
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||||
|
||||
}
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</pre>
|
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</div>
|
||||
</div>
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||||
</div>
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||||
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<div id="outline-container-org012e6e6" class="outline-3">
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<h3 id="org012e6e6"><span class="section-number-3">1.6</span> Template for HDF5 has/read/write a dataset of strings</h3>
|
||||
<div class="outline-text-3" id="text-1-6">
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<div class="org-src-container">
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<pre class="src src-c"><span style="color: #228b22;">trexio_exit_code</span>
|
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<span style="color: #0000ff;">trexio_hdf5_read_$group_dset$</span> (<span style="color: #228b22;">trexio_t</span>* <span style="color: #a020f0;">const</span> <span style="color: #a0522d;">file</span>, <span style="color: #228b22;">char</span>* <span style="color: #a020f0;">const</span> $group_dset$, <span style="color: #a020f0;">const</span> <span style="color: #228b22;">uint32_t</span> <span style="color: #a0522d;">rank</span>, <span style="color: #a020f0;">const</span> <span style="color: #228b22;">uint64_t</span>* <span style="color: #a0522d;">dims</span>, <span style="color: #a020f0;">const</span> <span style="color: #228b22;">uint32_t</span> <span style="color: #a0522d;">max_str_len</span>)
|
||||
{
|
||||
|
||||
<span style="color: #a020f0;">if</span> (file == <span style="color: #008b8b;">NULL</span>) <span style="color: #a020f0;">return</span> TREXIO_INVALID_ARG_1;
|
||||
<span style="color: #a020f0;">if</span> ($group_dset$ == <span style="color: #008b8b;">NULL</span>) <span style="color: #a020f0;">return</span> TREXIO_INVALID_ARG_2;
|
||||
|
||||
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">trexio_hdf5_t</span>* <span style="color: #a0522d;">f</span> = (<span style="color: #a020f0;">const</span> <span style="color: #228b22;">trexio_hdf5_t</span>*) file;
|
||||
|
||||
<span style="color: #228b22;">herr_t</span> <span style="color: #a0522d;">status</span>;
|
||||
|
||||
// <span style="color: #b22222;">open the dataset to get its dimensions</span>
|
||||
<span style="color: #228b22;">hid_t</span> <span style="color: #a0522d;">dset_id</span> = H5Dopen(f->$group$_group, $GROUP_DSET$_NAME, H5P_DEFAULT);
|
||||
<span style="color: #a020f0;">if</span> (dset_id <= 0) <span style="color: #a020f0;">return</span> TREXIO_INVALID_ID;
|
||||
|
||||
// <span style="color: #b22222;">allocate space for the dimensions to be read</span>
|
||||
<span style="color: #228b22;">hsize_t</span>* <span style="color: #a0522d;">ddims</span> = CALLOC( (<span style="color: #228b22;">int</span>) rank, hsize_t);
|
||||
<span style="color: #a020f0;">if</span> (ddims == <span style="color: #008b8b;">NULL</span>) {
|
||||
H5Dclose(dset_id);
|
||||
<span style="color: #a020f0;">return</span> TREXIO_ALLOCATION_FAILED;
|
||||
}
|
||||
|
||||
<span style="color: #228b22;">hid_t</span> <span style="color: #a0522d;">dspace</span> = H5Dget_space(dset_id);
|
||||
<span style="color: #a020f0;">if</span> (dset_id <= 0) {
|
||||
FREE(ddims);
|
||||
H5Dclose(dset_id);
|
||||
<span style="color: #a020f0;">return</span> TREXIO_INVALID_ID;
|
||||
}
|
||||
|
||||
// <span style="color: #b22222;">get the rank of the dataset in a file</span>
|
||||
<span style="color: #228b22;">int</span> <span style="color: #a0522d;">rrank</span> = H5Sget_simple_extent_dims(dspace, ddims, <span style="color: #008b8b;">NULL</span>);
|
||||
|
||||
<span style="color: #a020f0;">if</span> (rrank != (<span style="color: #228b22;">int</span>) rank) {
|
||||
FREE(ddims);
|
||||
H5Dclose(dset_id);
|
||||
H5Sclose(dspace);
|
||||
<span style="color: #a020f0;">return</span> TREXIO_INVALID_ARG_3;
|
||||
}
|
||||
|
||||
<span style="color: #a020f0;">for</span> (<span style="color: #228b22;">int</span> <span style="color: #a0522d;">i</span>=0; i<rrank; i++) {
|
||||
<span style="color: #a020f0;">if</span> (ddims[i] != dims[i]) {
|
||||
H5Dclose(dset_id);
|
||||
H5Sclose(dspace);
|
||||
FREE(ddims);
|
||||
<span style="color: #a020f0;">return</span> TREXIO_INVALID_ARG_4;
|
||||
}
|
||||
}
|
||||
FREE(ddims);
|
||||
|
||||
<span style="color: #228b22;">hid_t</span> <span style="color: #a0522d;">memtype</span> = H5Tcopy (H5T_C_S1);
|
||||
status = H5Tset_size(memtype, H5T_VARIABLE);
|
||||
<span style="color: #a020f0;">if</span> (status < 0 || memtype <= 0) {
|
||||
H5Dclose(dset_id);
|
||||
H5Sclose(dspace);
|
||||
<span style="color: #a020f0;">return</span> TREXIO_FAILURE;
|
||||
}
|
||||
|
||||
<span style="color: #228b22;">char</span>** <span style="color: #a0522d;">rdata</span> = CALLOC(dims[0], <span style="color: #228b22;">char</span>*);
|
||||
<span style="color: #a020f0;">if</span> (rdata == <span style="color: #008b8b;">NULL</span>) {
|
||||
H5Dclose(dset_id);
|
||||
H5Sclose(dspace);
|
||||
H5Tclose(memtype);
|
||||
<span style="color: #a020f0;">return</span> TREXIO_ALLOCATION_FAILED;
|
||||
}
|
||||
|
||||
status = H5Dread(dset_id, memtype, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata);
|
||||
<span style="color: #a020f0;">if</span> (status < 0) {
|
||||
FREE(rdata);
|
||||
H5Dclose(dset_id);
|
||||
H5Sclose(dspace);
|
||||
H5Tclose(memtype);
|
||||
<span style="color: #a020f0;">return</span> TREXIO_FAILURE;
|
||||
}
|
||||
|
||||
// <span style="color: #b22222;">copy contents of temporary rdata buffer into the group_dset otherwise they are lost</span>
|
||||
// <span style="color: #b22222;">after calling H5Treclaim or H5Dvlen_reclaim functions</span>
|
||||
strcpy($group_dset$, <span style="color: #8b2252;">""</span>);
|
||||
<span style="color: #a020f0;">for</span> (<span style="color: #228b22;">uint64_t</span> <span style="color: #a0522d;">i</span>=0; i<dims[0]; i++) {
|
||||
strncat($group_dset$, rdata[i], max_str_len);
|
||||
strcat($group_dset$, TREXIO_DELIM);
|
||||
}
|
||||
|
||||
// <span style="color: #b22222;">H5Dvlen_reclaim is deprecated and replaced by H5Treclaim in HDF5 v.1.12.0</span>
|
||||
<span style="color: #483d8b;"> #if</span> (H5_VERS_MAJOR <= 1 && H5_VERS_MINOR < 12)
|
||||
status = H5Dvlen_reclaim(memtype, dspace, H5P_DEFAULT, rdata);
|
||||
<span style="color: #483d8b;"> #else</span>
|
||||
status = H5Treclaim(memtype, dspace, H5P_DEFAULT, rdata);
|
||||
<span style="color: #483d8b;"> #endif</span>
|
||||
|
||||
<span style="color: #a020f0;">if</span> (status < 0) {
|
||||
FREE(rdata);
|
||||
H5Dclose(dset_id);
|
||||
H5Sclose(dspace);
|
||||
H5Tclose(memtype);
|
||||
<span style="color: #a020f0;">return</span> TREXIO_FAILURE;
|
||||
}
|
||||
|
||||
FREE(rdata);
|
||||
H5Dclose(dset_id);
|
||||
H5Sclose(dspace);
|
||||
H5Tclose(memtype);
|
||||
|
||||
<span style="color: #a020f0;">return</span> TREXIO_SUCCESS;
|
||||
}
|
||||
</pre>
|
||||
</div>
|
||||
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">trexio_exit_code</span>
|
||||
<span style="color: #0000ff;">trexio_hdf5_write_$group_dset$</span> (<span style="color: #228b22;">trexio_t</span>* <span style="color: #a020f0;">const</span> <span style="color: #a0522d;">file</span>, <span style="color: #a020f0;">const</span> <span style="color: #228b22;">char</span>** $group_dset$, <span style="color: #a020f0;">const</span> <span style="color: #228b22;">uint32_t</span> <span style="color: #a0522d;">rank</span>, <span style="color: #a020f0;">const</span> <span style="color: #228b22;">uint64_t</span>* <span style="color: #a0522d;">dims</span>)
|
||||
{
|
||||
|
||||
<span style="color: #a020f0;">if</span> (file == <span style="color: #008b8b;">NULL</span>) <span style="color: #a020f0;">return</span> TREXIO_INVALID_ARG_1;
|
||||
<span style="color: #a020f0;">if</span> ($group_dset$ == <span style="color: #008b8b;">NULL</span>) <span style="color: #a020f0;">return</span> TREXIO_INVALID_ARG_2;
|
||||
|
||||
<span style="color: #228b22;">trexio_exit_code</span> <span style="color: #a0522d;">rc</span>;
|
||||
uint64_t $group_dset_dim$;
|
||||
// <span style="color: #b22222;">error handling for rc is added by the generator</span>
|
||||
rc = trexio_hdf5_read_$group_dset_dim$(file, &($group_dset_dim$));
|
||||
<span style="color: #a020f0;">if</span> ($group_dset_dim$ == 0L) <span style="color: #a020f0;">return</span> TREXIO_INVALID_NUM;
|
||||
|
||||
<span style="color: #228b22;">trexio_hdf5_t</span>* <span style="color: #a0522d;">f</span> = (<span style="color: #228b22;">trexio_hdf5_t</span>*) file;
|
||||
|
||||
<span style="color: #228b22;">herr_t</span> <span style="color: #a0522d;">status</span>;
|
||||
<span style="color: #228b22;">hid_t</span> <span style="color: #a0522d;">dset_id</span>;
|
||||
|
||||
/* <span style="color: #b22222;">we are going to write variable-length strings </span>*/
|
||||
<span style="color: #228b22;">hid_t</span> <span style="color: #a0522d;">memtype</span> = H5Tcopy (H5T_C_S1);
|
||||
status = H5Tset_size (memtype, H5T_VARIABLE);
|
||||
|
||||
<span style="color: #a020f0;">if</span> ( H5LTfind_dataset(f->$group$_group, $GROUP_DSET$_NAME) != 1 ) {
|
||||
|
||||
/* <span style="color: #b22222;">code to create dataset </span>*/
|
||||
<span style="color: #228b22;">hid_t</span> <span style="color: #a0522d;">filetype</span> = H5Tcopy (H5T_FORTRAN_S1);
|
||||
status = H5Tset_size (filetype, H5T_VARIABLE);
|
||||
|
||||
<span style="color: #228b22;">hid_t</span> <span style="color: #a0522d;">dspace</span> = H5Screate_simple( (<span style="color: #228b22;">int</span>) rank, (<span style="color: #a020f0;">const</span> <span style="color: #228b22;">hsize_t</span>*) dims, <span style="color: #008b8b;">NULL</span>);
|
||||
|
||||
dset_id = H5Dcreate (f->$group$_group, $GROUP_DSET$_NAME, filetype, dspace,
|
||||
H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
|
||||
<span style="color: #a020f0;">if</span> (dset_id <= 0) <span style="color: #a020f0;">return</span> TREXIO_INVALID_ID;
|
||||
|
||||
status = H5Dwrite (dset_id, memtype,
|
||||
H5S_ALL, H5S_ALL, H5P_DEFAULT,
|
||||
$group_dset$);
|
||||
|
||||
H5Dclose (dset_id);
|
||||
H5Sclose (dspace);
|
||||
H5Tclose (filetype);
|
||||
H5Tclose (memtype);
|
||||
|
||||
<span style="color: #a020f0;">if</span> (status < 0) <span style="color: #a020f0;">return</span> TREXIO_FAILURE;
|
||||
|
||||
} <span style="color: #a020f0;">else</span> {
|
||||
|
||||
dset_id = H5Dopen(f->$group$_group, $GROUP_DSET$_NAME, H5P_DEFAULT);
|
||||
<span style="color: #a020f0;">if</span> (dset_id <= 0) <span style="color: #a020f0;">return</span> TREXIO_INVALID_ID;
|
||||
|
||||
/* <span style="color: #b22222;">code to write dataset </span>*/
|
||||
status = H5Dwrite(dset_id, memtype,
|
||||
H5S_ALL, H5S_ALL, H5P_DEFAULT,
|
||||
$group_dset$);
|
||||
|
||||
H5Dclose(dset_id);
|
||||
H5Tclose(memtype);
|
||||
|
||||
<span style="color: #a020f0;">if</span> (status < 0) <span style="color: #a020f0;">return</span> TREXIO_FAILURE;
|
||||
|
||||
}
|
||||
|
||||
<span style="color: #a020f0;">return</span> TREXIO_SUCCESS;
|
||||
|
||||
}
|
||||
</pre>
|
||||
</div>
|
||||
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">trexio_exit_code</span>
|
||||
<span style="color: #0000ff;">trexio_hdf5_has_$group_dset$</span> (<span style="color: #228b22;">trexio_t</span>* <span style="color: #a020f0;">const</span> <span style="color: #a0522d;">file</span>)
|
||||
{
|
||||
|
||||
<span style="color: #a020f0;">if</span> (file == <span style="color: #008b8b;">NULL</span>) <span style="color: #a020f0;">return</span> TREXIO_INVALID_ARG_1;
|
||||
|
||||
<span style="color: #228b22;">trexio_hdf5_t</span>* <span style="color: #a0522d;">f</span> = (<span style="color: #228b22;">trexio_hdf5_t</span>*) file;
|
||||
|
||||
<span style="color: #228b22;">herr_t</span> <span style="color: #a0522d;">status</span> = H5LTfind_dataset(f->$group$_group, $GROUP_DSET$_NAME);
|
||||
/* <span style="color: #b22222;">H5LTfind_dataset returns 1 if dataset exists, 0 otherwise </span>*/
|
||||
<span style="color: #a020f0;">if</span> (status == 1){
|
||||
<span style="color: #a020f0;">return</span> TREXIO_SUCCESS;
|
||||
} <span style="color: #a020f0;">else</span> <span style="color: #a020f0;">if</span> (status == 0) {
|
||||
<span style="color: #a020f0;">return</span> TREXIO_HAS_NOT;
|
||||
} <span style="color: #a020f0;">else</span> {
|
||||
<span style="color: #a020f0;">return</span> TREXIO_FAILURE;
|
||||
}
|
||||
|
||||
}
|
||||
</pre>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org4187fef" class="outline-3">
|
||||
<h3 id="org4187fef"><span class="section-number-3">1.7</span> Template for HDF5 has/read/write a single string attribute</h3>
|
||||
<div class="outline-text-3" id="text-1-7">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">trexio_exit_code</span>
|
||||
<span style="color: #0000ff;">trexio_hdf5_read_$group_str$</span> (<span style="color: #228b22;">trexio_t</span>* <span style="color: #a020f0;">const</span> <span style="color: #a0522d;">file</span>, <span style="color: #228b22;">char</span>* <span style="color: #a020f0;">const</span> <span style="color: #a0522d;">str</span>, <span style="color: #a020f0;">const</span> <span style="color: #228b22;">uint32_t</span> <span style="color: #a0522d;">max_str_len</span>)
|
||||
{
|
||||
|
||||
<span style="color: #a020f0;">if</span> (file == <span style="color: #008b8b;">NULL</span>) <span style="color: #a020f0;">return</span> TREXIO_INVALID_ARG_1;
|
||||
<span style="color: #a020f0;">if</span> (str == <span style="color: #008b8b;">NULL</span>) <span style="color: #a020f0;">return</span> TREXIO_INVALID_ARG_2;
|
||||
|
||||
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">trexio_hdf5_t</span>* <span style="color: #a0522d;">f</span> = (<span style="color: #a020f0;">const</span> <span style="color: #228b22;">trexio_hdf5_t</span>*) file;
|
||||
/* <span style="color: #b22222;">Quit if the string attribute is missing in the file </span>*/
|
||||
<span style="color: #a020f0;">if</span> (H5Aexists(f->$group$_group, $GROUP_STR$_NAME) == 0) <span style="color: #a020f0;">return</span> TREXIO_HAS_NOT;
|
||||
|
||||
/* <span style="color: #b22222;">Read the $group_str$ attribute of $group$ group </span>*/
|
||||
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">hid_t</span> <span style="color: #a0522d;">str_id</span> = H5Aopen(f->$group$_group, $GROUP_STR$_NAME, H5P_DEFAULT);
|
||||
<span style="color: #a020f0;">if</span> (str_id <= 0) <span style="color: #a020f0;">return</span> TREXIO_INVALID_ID;
|
||||
|
||||
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">hid_t</span> <span style="color: #a0522d;">ftype_id</span> = H5Aget_type(str_id);
|
||||
<span style="color: #a020f0;">if</span> (ftype_id <= 0) <span style="color: #a020f0;">return</span> TREXIO_INVALID_ID;
|
||||
<span style="color: #228b22;">uint64_t</span> <span style="color: #a0522d;">sdim</span> = H5Tget_size(ftype_id);
|
||||
<span style="color: #a020f0;">if</span> (sdim <= 0) <span style="color: #a020f0;">return</span> TREXIO_FAILURE;
|
||||
sdim++; /* <span style="color: #b22222;">Make room for null terminator </span>*/
|
||||
|
||||
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">hid_t</span> <span style="color: #a0522d;">mem_id</span> = H5Tcopy(H5T_C_S1);
|
||||
<span style="color: #a020f0;">if</span> (mem_id <= 0) <span style="color: #a020f0;">return</span> TREXIO_INVALID_ID;
|
||||
|
||||
<span style="color: #228b22;">herr_t</span> <span style="color: #a0522d;">status</span>;
|
||||
status = (max_str_len+1) > sdim ? H5Tset_size(mem_id, sdim) : H5Tset_size(mem_id, max_str_len+1) ;
|
||||
<span style="color: #a020f0;">if</span> (status < 0) <span style="color: #a020f0;">return</span> TREXIO_FAILURE;
|
||||
|
||||
status = H5Aread(str_id, mem_id, str);
|
||||
<span style="color: #a020f0;">if</span> (status < 0) <span style="color: #a020f0;">return</span> TREXIO_FAILURE;
|
||||
|
||||
H5Aclose(str_id);
|
||||
H5Tclose(mem_id);
|
||||
H5Tclose(ftype_id);
|
||||
|
||||
<span style="color: #a020f0;">return</span> TREXIO_SUCCESS;
|
||||
|
||||
}
|
||||
</pre>
|
||||
</div>
|
||||
|
||||
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">trexio_exit_code</span>
|
||||
<span style="color: #0000ff;">trexio_hdf5_write_$group_str$</span> (<span style="color: #228b22;">trexio_t</span>* <span style="color: #a020f0;">const</span> <span style="color: #a0522d;">file</span>, <span style="color: #a020f0;">const</span> <span style="color: #228b22;">char</span>* <span style="color: #a0522d;">str</span>)
|
||||
{
|
||||
|
||||
<span style="color: #a020f0;">if</span> (file == <span style="color: #008b8b;">NULL</span>) <span style="color: #a020f0;">return</span> TREXIO_INVALID_ARG_1;
|
||||
<span style="color: #a020f0;">if</span> (str == <span style="color: #008b8b;">NULL</span>) <span style="color: #a020f0;">return</span> TREXIO_INVALID_ARG_2;
|
||||
|
||||
<span style="color: #228b22;">trexio_hdf5_t</span>* <span style="color: #a020f0;">const</span> <span style="color: #a0522d;">f</span> = (<span style="color: #228b22;">trexio_hdf5_t</span>*) file;
|
||||
|
||||
|
||||
/* <span style="color: #b22222;">Setup the dataspace </span>*/
|
||||
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">hid_t</span> <span style="color: #a0522d;">dtype_id</span> = H5Tcopy(H5T_C_S1);
|
||||
<span style="color: #a020f0;">if</span> (dtype_id <= 0) <span style="color: #a020f0;">return</span> TREXIO_INVALID_ID;
|
||||
|
||||
<span style="color: #228b22;">size_t</span> <span style="color: #a0522d;">str_attr_len</span> = strlen(str) + 1;
|
||||
|
||||
<span style="color: #228b22;">herr_t</span> <span style="color: #a0522d;">status</span>;
|
||||
status = H5Tset_size(dtype_id, str_attr_len);
|
||||
<span style="color: #a020f0;">if</span> (status < 0) <span style="color: #a020f0;">return</span> TREXIO_FAILURE;
|
||||
|
||||
status = H5Tset_strpad(dtype_id, H5T_STR_NULLTERM);
|
||||
<span style="color: #a020f0;">if</span> (status < 0) <span style="color: #a020f0;">return</span> TREXIO_FAILURE;
|
||||
|
||||
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">hid_t</span> <span style="color: #a0522d;">dspace_id</span> = H5Screate(H5S_SCALAR);
|
||||
<span style="color: #a020f0;">if</span> (dspace_id <= 0) <span style="color: #a020f0;">return</span> TREXIO_INVALID_ID;
|
||||
|
||||
/* <span style="color: #b22222;">Create the $group_str$ attribute of $group$ group </span>*/
|
||||
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">hid_t</span> <span style="color: #a0522d;">str_id</span> = H5Acreate(f->$group$_group, $GROUP_STR$_NAME, dtype_id, dspace_id,
|
||||
H5P_DEFAULT, H5P_DEFAULT);
|
||||
|
||||
<span style="color: #a020f0;">if</span> (str_id <= 0) {
|
||||
H5Sclose(dspace_id);
|
||||
H5Tclose(dtype_id);
|
||||
<span style="color: #a020f0;">return</span> TREXIO_INVALID_ID;
|
||||
}
|
||||
|
||||
status = H5Awrite(str_id, dtype_id, str);
|
||||
<span style="color: #a020f0;">if</span> (status < 0) {
|
||||
H5Aclose(str_id);
|
||||
H5Sclose(dspace_id);
|
||||
H5Tclose(dtype_id);
|
||||
<span style="color: #a020f0;">return</span> TREXIO_FAILURE;
|
||||
}
|
||||
|
||||
H5Aclose(str_id);
|
||||
H5Sclose(dspace_id);
|
||||
H5Tclose(dtype_id);
|
||||
<span style="color: #a020f0;">return</span> TREXIO_SUCCESS;
|
||||
|
||||
}
|
||||
</pre>
|
||||
</div>
|
||||
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">trexio_exit_code</span>
|
||||
<span style="color: #0000ff;">trexio_hdf5_has_$group_str$</span> (<span style="color: #228b22;">trexio_t</span>* <span style="color: #a020f0;">const</span> <span style="color: #a0522d;">file</span>)
|
||||
{
|
||||
|
||||
<span style="color: #a020f0;">if</span> (file == <span style="color: #008b8b;">NULL</span>) <span style="color: #a020f0;">return</span> TREXIO_INVALID_ARG_1;
|
||||
|
||||
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">trexio_hdf5_t</span>* <span style="color: #a0522d;">f</span> = (<span style="color: #a020f0;">const</span> <span style="color: #228b22;">trexio_hdf5_t</span>*) file;
|
||||
|
||||
<span style="color: #228b22;">htri_t</span> <span style="color: #a0522d;">status</span> = H5Aexists(f->$group$_group, $GROUP_STR$_NAME);
|
||||
/* <span style="color: #b22222;">H5Aexists returns positive value if attribute exists, 0 if does not, negative if error </span>*/
|
||||
<span style="color: #a020f0;">if</span> (status > 0){
|
||||
<span style="color: #a020f0;">return</span> TREXIO_SUCCESS;
|
||||
} <span style="color: #a020f0;">else</span> <span style="color: #a020f0;">if</span> (status == 0) {
|
||||
<span style="color: #a020f0;">return</span> TREXIO_HAS_NOT;
|
||||
} <span style="color: #a020f0;">else</span> {
|
||||
<span style="color: #a020f0;">return</span> TREXIO_FAILURE;
|
||||
}
|
||||
|
||||
}
|
||||
</pre>
|
||||
</div>
|
||||
@ -695,7 +1029,7 @@ for the JavaScript code in this tag.
|
||||
</div>
|
||||
<div id="postamble" class="status">
|
||||
<p class="author">Author: TREX-CoE</p>
|
||||
<p class="date">Created: 2021-06-14 Mon 07:35</p>
|
||||
<p class="date">Created: 2021-06-15 Tue 10:12</p>
|
||||
<p class="validation"><a href="http://validator.w3.org/check?uri=referer">Validate</a></p>
|
||||
</div>
|
||||
</body>
|
||||
|
||||
@ -3,7 +3,7 @@
|
||||
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
|
||||
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
|
||||
<head>
|
||||
<!-- 2021-06-14 Mon 07:35 -->
|
||||
<!-- 2021-06-15 Tue 10:12 -->
|
||||
<meta http-equiv="Content-Type" content="text/html;charset=utf-8" />
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1" />
|
||||
<title>TEXT back end</title>
|
||||
@ -311,24 +311,26 @@ for the JavaScript code in this tag.
|
||||
<h2>Table of Contents</h2>
|
||||
<div id="text-table-of-contents">
|
||||
<ul>
|
||||
<li><a href="#org4f1583e">1. TEXT back end</a>
|
||||
<li><a href="#org39c237c">1. TEXT back end</a>
|
||||
<ul>
|
||||
<li><a href="#org622f839">1.1. Template for group-related structures in text back end</a></li>
|
||||
<li><a href="#org2bc7cd9">1.2. Template for general structure in text back end</a></li>
|
||||
<li><a href="#org394737e">1.3. Initialize function (constant part)</a></li>
|
||||
<li><a href="#orgc7b50a7">1.4. Deinitialize function (templated part)</a></li>
|
||||
<li><a href="#orgba73b24">1.5. Template for text read struct</a></li>
|
||||
<li><a href="#orgb1115ba">1.6. Template for text flush struct</a></li>
|
||||
<li><a href="#orgd41ec0e">1.7. Template for text free memory</a></li>
|
||||
<li><a href="#orgad26516">1.8. Template for has/read/write the <code>$group_num$</code> attribute</a></li>
|
||||
<li><a href="#org2f91d61">1.9. Template for has/read/write the <code>$group_dset$</code> dataset</a></li>
|
||||
<li><a href="#orgbcff4b0">1.10. RDM struct (hard-coded)</a>
|
||||
<li><a href="#orgc064fe6">1.1. Template for group-related structures in text back end</a></li>
|
||||
<li><a href="#org93d3111">1.2. Template for general structure in text back end</a></li>
|
||||
<li><a href="#org7518c3a">1.3. Initialize function (constant part)</a></li>
|
||||
<li><a href="#orgd1242b8">1.4. Deinitialize function (templated part)</a></li>
|
||||
<li><a href="#org0eb0105">1.5. Template for text read struct</a></li>
|
||||
<li><a href="#orged1c7e3">1.6. Template for text flush struct</a></li>
|
||||
<li><a href="#orgd2e3bd7">1.7. Template for text free memory</a></li>
|
||||
<li><a href="#org24e7806">1.8. Template for has/read/write the num attribute</a></li>
|
||||
<li><a href="#orge76dae8">1.9. Template for has/read/write the dataset of numerical data</a></li>
|
||||
<li><a href="#org5f5a080">1.10. Template for has/read/write the dataset of strings</a></li>
|
||||
<li><a href="#org86c8d38">1.11. Template for has/read/write the string attribute</a></li>
|
||||
<li><a href="#org742b9cb">1.12. RDM struct (hard-coded)</a>
|
||||
<ul>
|
||||
<li><a href="#orgd4e1776">1.10.1. Read the complete struct</a></li>
|
||||
<li><a href="#org5029913">1.10.2. Flush the complete struct</a></li>
|
||||
<li><a href="#org76c677e">1.10.3. Free memory</a></li>
|
||||
<li><a href="#org1c54582">1.10.4. Read/Write the one<sub>e</sub> attribute</a></li>
|
||||
<li><a href="#orgb30e092">1.10.5. Read/Write the two<sub>e</sub> attribute</a></li>
|
||||
<li><a href="#orgabe2d7f">1.12.1. Read the complete struct</a></li>
|
||||
<li><a href="#orgc55cf6f">1.12.2. Flush the complete struct</a></li>
|
||||
<li><a href="#org3745b0e">1.12.3. Free memory</a></li>
|
||||
<li><a href="#orgf9cdf06">1.12.4. Read/Write the one<sub>e</sub> attribute</a></li>
|
||||
<li><a href="#orga56f485">1.12.5. Read/Write the two<sub>e</sub> attribute</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
@ -337,8 +339,8 @@ for the JavaScript code in this tag.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org4f1583e" class="outline-2">
|
||||
<h2 id="org4f1583e"><span class="section-number-2">1</span> TEXT back end</h2>
|
||||
<div id="outline-container-org39c237c" class="outline-2">
|
||||
<h2 id="org39c237c"><span class="section-number-2">1</span> TEXT back end</h2>
|
||||
<div class="outline-text-2" id="text-1">
|
||||
<p>
|
||||
The "file" produced by the text back end is a directory with one
|
||||
@ -359,8 +361,8 @@ The file is written when closed, or when the flush function is called.
|
||||
</p>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org622f839" class="outline-3">
|
||||
<h3 id="org622f839"><span class="section-number-3">1.1</span> Template for group-related structures in text back end</h3>
|
||||
<div id="outline-container-orgc064fe6" class="outline-3">
|
||||
<h3 id="orgc064fe6"><span class="section-number-3">1.1</span> Template for group-related structures in text back end</h3>
|
||||
<div class="outline-text-3" id="text-1-1">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #a020f0;">typedef</span> <span style="color: #a020f0;">struct</span> $group$_s {
|
||||
@ -369,6 +371,8 @@ The file is written when closed, or when the flush function is called.
|
||||
<span style="color: #228b22;">uint32_t</span> <span style="color: #a0522d;">rank_$group_dset$</span>;
|
||||
<span style="color: #228b22;">uint32_t</span> <span style="color: #a0522d;">to_flush</span>;
|
||||
<span style="color: #228b22;">uint64_t</span> <span style="color: #a0522d;">dims_$group_dset$</span>[16];
|
||||
<span style="color: #228b22;">uint64_t</span> <span style="color: #a0522d;">len_$group_str$</span>;
|
||||
<span style="color: #228b22;">char</span>* $group_str$;
|
||||
<span style="color: #228b22;">char</span> <span style="color: #a0522d;">file_name</span>[TREXIO_MAX_FILENAME_LENGTH];
|
||||
} $group$_t;
|
||||
</pre>
|
||||
@ -376,8 +380,8 @@ The file is written when closed, or when the flush function is called.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org2bc7cd9" class="outline-3">
|
||||
<h3 id="org2bc7cd9"><span class="section-number-3">1.2</span> Template for general structure in text back end</h3>
|
||||
<div id="outline-container-org93d3111" class="outline-3">
|
||||
<h3 id="org93d3111"><span class="section-number-3">1.2</span> Template for general structure in text back end</h3>
|
||||
<div class="outline-text-3" id="text-1-2">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #a020f0;">typedef</span> <span style="color: #a020f0;">struct</span> <span style="color: #228b22;">rdm_s</span> {
|
||||
@ -403,8 +407,8 @@ The file is written when closed, or when the flush function is called.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org394737e" class="outline-3">
|
||||
<h3 id="org394737e"><span class="section-number-3">1.3</span> Initialize function (constant part)</h3>
|
||||
<div id="outline-container-org7518c3a" class="outline-3">
|
||||
<h3 id="org7518c3a"><span class="section-number-3">1.3</span> Initialize function (constant part)</h3>
|
||||
<div class="outline-text-3" id="text-1-3">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">trexio_exit_code</span>
|
||||
@ -505,8 +509,8 @@ The file is written when closed, or when the flush function is called.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgc7b50a7" class="outline-3">
|
||||
<h3 id="orgc7b50a7"><span class="section-number-3">1.4</span> Deinitialize function (templated part)</h3>
|
||||
<div id="outline-container-orgd1242b8" class="outline-3">
|
||||
<h3 id="orgd1242b8"><span class="section-number-3">1.4</span> Deinitialize function (templated part)</h3>
|
||||
<div class="outline-text-3" id="text-1-4">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">trexio_exit_code</span>
|
||||
@ -531,8 +535,8 @@ The file is written when closed, or when the flush function is called.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgba73b24" class="outline-3">
|
||||
<h3 id="orgba73b24"><span class="section-number-3">1.5</span> Template for text read struct</h3>
|
||||
<div id="outline-container-org0eb0105" class="outline-3">
|
||||
<h3 id="org0eb0105"><span class="section-number-3">1.5</span> Template for text read struct</h3>
|
||||
<div class="outline-text-3" id="text-1-5">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c">$group$_t*
|
||||
@ -583,7 +587,7 @@ trexio_text_read_$group$ (<span style="color: #228b22;">trexio_text_t</span>* <s
|
||||
|
||||
/* <span style="color: #b22222;">Read the dimensioning variables </span>*/
|
||||
<span style="color: #228b22;">int</span> <span style="color: #a0522d;">rc</span>;
|
||||
// <span style="color: #b22222;">START REPEAT GROUP_DSET</span>
|
||||
// <span style="color: #b22222;">START REPEAT GROUP_DSET_ALL</span>
|
||||
rc = fscanf(f, <span style="color: #8b2252;">"%1023s"</span>, buffer);
|
||||
<span style="color: #a020f0;">if</span> ((rc != 1) || (strcmp(buffer, <span style="color: #8b2252;">"rank_$group_dset$"</span>) != 0)) {
|
||||
FREE(buffer);
|
||||
@ -604,9 +608,9 @@ trexio_text_read_$group$ (<span style="color: #228b22;">trexio_text_t</span>* <s
|
||||
<span style="color: #228b22;">uint64_t</span> <span style="color: #a0522d;">size_$group_dset$</span> = 0;
|
||||
<span style="color: #a020f0;">if</span> ($group$->rank_$group_dset$ != 0) size_$group_dset$ = 1;
|
||||
|
||||
<span style="color: #a020f0;">for</span> (<span style="color: #228b22;">unsigned</span> <span style="color: #228b22;">int</span> <span style="color: #a0522d;">i</span>=0; i<$group$->rank_$group_dset$; ++i){
|
||||
<span style="color: #a020f0;">for</span> (<span style="color: #228b22;">uint32_t</span> <span style="color: #a0522d;">i</span>=0; i<$group$->rank_$group_dset$; ++i){
|
||||
|
||||
<span style="color: #228b22;">unsigned</span> <span style="color: #228b22;">int</span> <span style="color: #a0522d;">j</span>=0;
|
||||
<span style="color: #228b22;">uint32_t</span> <span style="color: #a0522d;">j</span>=0;
|
||||
|
||||
rc = fscanf(f, <span style="color: #8b2252;">"%1023s %u"</span>, buffer, &j);
|
||||
<span style="color: #a020f0;">if</span> ((rc != 2) || (strcmp(buffer, <span style="color: #8b2252;">"dims_$group_dset$"</span>) != 0) || (j!=i)) {
|
||||
@ -627,7 +631,7 @@ trexio_text_read_$group$ (<span style="color: #228b22;">trexio_text_t</span>* <s
|
||||
|
||||
size_$group_dset$ *= $group$->dims_$group_dset$[i];
|
||||
}
|
||||
// <span style="color: #b22222;">END REPEAT GROUP_DSET</span>
|
||||
// <span style="color: #b22222;">END REPEAT GROUP_DSET_ALL</span>
|
||||
|
||||
// <span style="color: #b22222;">START REPEAT GROUP_NUM</span>
|
||||
/* <span style="color: #b22222;">Read data </span>*/
|
||||
@ -650,13 +654,68 @@ trexio_text_read_$group$ (<span style="color: #228b22;">trexio_text_t</span>* <s
|
||||
}
|
||||
// <span style="color: #b22222;">END REPEAT GROUP_NUM</span>
|
||||
|
||||
// <span style="color: #b22222;">START REPEAT GROUP_DSET</span>
|
||||
// <span style="color: #b22222;">START REPEAT GROUP_ATTR_STR</span>
|
||||
rc = fscanf(f, <span style="color: #8b2252;">"%1023s"</span>, buffer);
|
||||
assert(!((rc != 1) || (strcmp(buffer, <span style="color: #8b2252;">"len_$group_str$"</span>) != 0)));
|
||||
<span style="color: #a020f0;">if</span> ((rc != 1) || (strcmp(buffer, <span style="color: #8b2252;">"len_$group_str$"</span>) != 0)) {
|
||||
FREE(buffer);
|
||||
fclose(f);
|
||||
FREE($group$);
|
||||
<span style="color: #a020f0;">return</span> <span style="color: #008b8b;">NULL</span>;
|
||||
}
|
||||
|
||||
rc = fscanf(f, <span style="color: #8b2252;">"%"</span> SCNu64 <span style="color: #8b2252;">""</span>, &($group$->len_$group_str$));
|
||||
assert(!(rc != 1));
|
||||
<span style="color: #a020f0;">if</span> (rc != 1) {
|
||||
FREE(buffer);
|
||||
fclose(f);
|
||||
FREE($group$);
|
||||
<span style="color: #a020f0;">return</span> <span style="color: #008b8b;">NULL</span>;
|
||||
}
|
||||
|
||||
rc = fscanf(f, <span style="color: #8b2252;">"%1023s"</span>, buffer);
|
||||
assert(!((rc != 1) || (strcmp(buffer, <span style="color: #8b2252;">"$group_str$"</span>) != 0)));
|
||||
<span style="color: #a020f0;">if</span> ((rc != 1) || (strcmp(buffer, <span style="color: #8b2252;">"$group_str$"</span>) != 0)) {
|
||||
FREE(buffer);
|
||||
fclose(f);
|
||||
FREE($group$->$group_str$);
|
||||
FREE($group$);
|
||||
<span style="color: #a020f0;">return</span> <span style="color: #008b8b;">NULL</span>;
|
||||
}
|
||||
|
||||
<span style="color: #a020f0;">if</span> ($group$->len_$group_str$ != 0) {
|
||||
|
||||
$group$->$group_str$ = CALLOC($group$->len_$group_str$, <span style="color: #228b22;">char</span>);
|
||||
assert (!($group$->$group_str$ == <span style="color: #008b8b;">NULL</span>));
|
||||
<span style="color: #a020f0;">if</span> ($group$->$group_str$ == <span style="color: #008b8b;">NULL</span>) {
|
||||
FREE(buffer);
|
||||
fclose(f);
|
||||
FREE($group$->$group_str$);
|
||||
FREE($group$);
|
||||
<span style="color: #a020f0;">return</span> <span style="color: #008b8b;">NULL</span>;
|
||||
}
|
||||
|
||||
rc = fscanf(f, <span style="color: #8b2252;">" %1023[^\n]"</span>, $group$->$group_str$);
|
||||
assert(!(rc != 1));
|
||||
<span style="color: #a020f0;">if</span> (rc != 1) {
|
||||
FREE(buffer);
|
||||
fclose(f);
|
||||
FREE($group$->$group_str$);
|
||||
FREE($group$);
|
||||
<span style="color: #a020f0;">return</span> <span style="color: #008b8b;">NULL</span>;
|
||||
}
|
||||
|
||||
}
|
||||
// <span style="color: #b22222;">END REPEAT GROUP_ATTR_STR</span>
|
||||
|
||||
// <span style="color: #b22222;">START REPEAT GROUP_DSET_NUM</span>
|
||||
/* <span style="color: #b22222;">Allocate arrays </span>*/
|
||||
$group$->$group_dset$ = CALLOC(size_$group_dset$, $group_dset_dtype$);
|
||||
assert (!($group$->$group_dset$ == <span style="color: #008b8b;">NULL</span>));
|
||||
<span style="color: #a020f0;">if</span> ($group$->$group_dset$ == <span style="color: #008b8b;">NULL</span>) {
|
||||
FREE(buffer);
|
||||
fclose(f);
|
||||
FREE($group$->$group_dset$);
|
||||
FREE($group$);
|
||||
<span style="color: #a020f0;">return</span> <span style="color: #008b8b;">NULL</span>;
|
||||
}
|
||||
@ -682,7 +741,57 @@ trexio_text_read_$group$ (<span style="color: #228b22;">trexio_text_t</span>* <s
|
||||
<span style="color: #a020f0;">return</span> <span style="color: #008b8b;">NULL</span>;
|
||||
}
|
||||
}
|
||||
// <span style="color: #b22222;">END REPEAT GROUP_DSET</span>
|
||||
// <span style="color: #b22222;">END REPEAT GROUP_DSET_NUM</span>
|
||||
|
||||
<span style="color: #228b22;">size_t</span> <span style="color: #a0522d;">tmp_len</span>;
|
||||
|
||||
// <span style="color: #b22222;">START REPEAT GROUP_DSET_STR</span>
|
||||
/* <span style="color: #b22222;">Allocate arrays </span>*/
|
||||
$group$->$group_dset$ = CALLOC(size_$group_dset$, $group_dset_dtype$);
|
||||
assert (!($group$->$group_dset$ == <span style="color: #008b8b;">NULL</span>));
|
||||
<span style="color: #a020f0;">if</span> ($group$->$group_dset$ == <span style="color: #008b8b;">NULL</span>) {
|
||||
FREE(buffer);
|
||||
fclose(f);
|
||||
FREE($group$->$group_dset$);
|
||||
FREE($group$);
|
||||
<span style="color: #a020f0;">return</span> <span style="color: #008b8b;">NULL</span>;
|
||||
}
|
||||
|
||||
rc = fscanf(f, <span style="color: #8b2252;">"%1023s"</span>, buffer);
|
||||
assert(!((rc != 1) || (strcmp(buffer, <span style="color: #8b2252;">"$group_dset$"</span>) != 0)));
|
||||
<span style="color: #a020f0;">if</span> ((rc != 1) || (strcmp(buffer, <span style="color: #8b2252;">"$group_dset$"</span>) != 0)) {
|
||||
FREE(buffer);
|
||||
fclose(f);
|
||||
FREE($group$->$group_dset$);
|
||||
FREE($group$);
|
||||
<span style="color: #a020f0;">return</span> <span style="color: #008b8b;">NULL</span>;
|
||||
}
|
||||
|
||||
/* <span style="color: #b22222;">WARNING: this tmp array allows to avoid allocation of space for each element of array of string</span>
|
||||
<span style="color: #b22222;"> , BUT it's size has to be number_of_str*max_len_str where max_len_str is somewhat arbitrary, e.g. 32.</span>
|
||||
<span style="color: #b22222;"> </span>*/
|
||||
<span style="color: #228b22;">char</span>* <span style="color: #a0522d;">tmp_$group_dset$</span>;
|
||||
<span style="color: #a020f0;">if</span>(size_$group_dset$ != 0) tmp_$group_dset$ = CALLOC(size_$group_dset$*32, <span style="color: #228b22;">char</span>);
|
||||
tmp_len = 0;
|
||||
<span style="color: #a020f0;">for</span> (<span style="color: #228b22;">uint64_t</span> <span style="color: #a0522d;">i</span>=0 ; i<size_$group_dset$ ; ++i) {
|
||||
$group$->$group_dset$[i] = tmp_$group_dset$;
|
||||
/* <span style="color: #b22222;">conventional fcanf with "%s" only return the string before the first space character </span>
|
||||
<span style="color: #b22222;"> * to read string with spaces use "%[^\n]" possible with space before or after, i.e. " %[^\n]"</span>
|
||||
<span style="color: #b22222;"> * Q: depending on what ? </span>*/
|
||||
rc = fscanf(f, <span style="color: #8b2252;">" %1023[^\n]"</span>, tmp_$group_dset$);
|
||||
assert(!(rc != 1));
|
||||
<span style="color: #a020f0;">if</span> (rc != 1) {
|
||||
FREE(buffer);
|
||||
fclose(f);
|
||||
FREE($group$->$group_dset$);
|
||||
FREE($group$);
|
||||
<span style="color: #a020f0;">return</span> <span style="color: #008b8b;">NULL</span>;
|
||||
}
|
||||
|
||||
tmp_len = strlen($group$->$group_dset$[i]);
|
||||
tmp_$group_dset$ += tmp_len + 1;
|
||||
}
|
||||
// <span style="color: #b22222;">END REPEAT GROUP_DSET_STR</span>
|
||||
|
||||
FREE(buffer);
|
||||
fclose(f);
|
||||
@ -698,8 +807,8 @@ trexio_text_read_$group$ (<span style="color: #228b22;">trexio_text_t</span>* <s
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgb1115ba" class="outline-3">
|
||||
<h3 id="orgb1115ba"><span class="section-number-3">1.6</span> Template for text flush struct</h3>
|
||||
<div id="outline-container-orged1c7e3" class="outline-3">
|
||||
<h3 id="orged1c7e3"><span class="section-number-3">1.6</span> Template for text flush struct</h3>
|
||||
<div class="outline-text-3" id="text-1-6">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">trexio_exit_code</span>
|
||||
@ -722,7 +831,7 @@ trexio_text_read_$group$ (<span style="color: #228b22;">trexio_text_t</span>* <s
|
||||
<span style="color: #a020f0;">if</span> (f == <span style="color: #008b8b;">NULL</span>) <span style="color: #a020f0;">return</span> TREXIO_INVALID_ARG_1;
|
||||
|
||||
/* <span style="color: #b22222;">Write the dimensioning variables </span>*/
|
||||
// <span style="color: #b22222;">START REPEAT GROUP_DSET</span>
|
||||
// <span style="color: #b22222;">START REPEAT GROUP_DSET_ALL</span>
|
||||
fprintf(f, <span style="color: #8b2252;">"rank_$group_dset$ %u\n"</span>, $group$->rank_$group_dset$);
|
||||
// <span style="color: #b22222;">workaround for the case of missing blocks in the file</span>
|
||||
<span style="color: #228b22;">uint64_t</span> <span style="color: #a0522d;">size_$group_dset$</span> = 0;
|
||||
@ -732,21 +841,26 @@ trexio_text_read_$group$ (<span style="color: #228b22;">trexio_text_t</span>* <s
|
||||
fprintf(f, <span style="color: #8b2252;">"dims_$group_dset$ %u %"</span> PRIu64 <span style="color: #8b2252;">"\n"</span>, i, $group$->dims_$group_dset$[i]);
|
||||
size_$group_dset$ *= $group$->dims_$group_dset$[i];
|
||||
}
|
||||
|
||||
// <span style="color: #b22222;">END REPEAT GROUP_DSET</span>
|
||||
// <span style="color: #b22222;">END REPEAT GROUP_DSET_ALL</span>
|
||||
|
||||
// <span style="color: #b22222;">START REPEAT GROUP_NUM</span>
|
||||
fprintf(f, <span style="color: #8b2252;">"$group_num$ %"</span> PRIu64 <span style="color: #8b2252;">"\n"</span>, $group$->$group_num$);
|
||||
// <span style="color: #b22222;">END REPEAT GROUP_NUM</span>
|
||||
|
||||
// <span style="color: #b22222;">START REPEAT GROUP_ATTR_STR</span>
|
||||
fprintf(f, <span style="color: #8b2252;">"len_$group_str$ %"</span> PRIu64 <span style="color: #8b2252;">"\n"</span>, $group$->len_$group_str$);
|
||||
fprintf(f, <span style="color: #8b2252;">"$group_str$\n"</span>);
|
||||
<span style="color: #a020f0;">if</span> ($group$->len_$group_str$ != 0) fprintf(f, <span style="color: #8b2252;">"%s\n"</span>, $group$->$group_str$);
|
||||
// <span style="color: #b22222;">END REPEAT GROUP_ATTR_STR</span>
|
||||
|
||||
/* <span style="color: #b22222;">Write arrays </span>*/
|
||||
// <span style="color: #b22222;">START REPEAT GROUP_DSET</span>
|
||||
// <span style="color: #b22222;">START REPEAT GROUP_DSET_ALL</span>
|
||||
|
||||
fprintf(f, <span style="color: #8b2252;">"$group_dset$\n"</span>);
|
||||
<span style="color: #a020f0;">for</span> (<span style="color: #228b22;">uint64_t</span> <span style="color: #a0522d;">i</span>=0 ; i<size_$group_dset$ ; ++i) {
|
||||
fprintf(f, <span style="color: #8b2252;">"%$group_dset_std_dtype_out$\n"</span>, $group$->$group_dset$[i]);
|
||||
}
|
||||
// <span style="color: #b22222;">END REPEAT GROUP_DSET</span>
|
||||
// <span style="color: #b22222;">END REPEAT GROUP_DSET_ALL</span>
|
||||
|
||||
fclose(f);
|
||||
$group$->to_flush = 0;
|
||||
@ -758,8 +872,8 @@ trexio_text_read_$group$ (<span style="color: #228b22;">trexio_text_t</span>* <s
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgd41ec0e" class="outline-3">
|
||||
<h3 id="orgd41ec0e"><span class="section-number-3">1.7</span> Template for text free memory</h3>
|
||||
<div id="outline-container-orgd2e3bd7" class="outline-3">
|
||||
<h3 id="orgd2e3bd7"><span class="section-number-3">1.7</span> Template for text free memory</h3>
|
||||
<div class="outline-text-3" id="text-1-7">
|
||||
<p>
|
||||
Memory is allocated when reading. The following function frees memory.
|
||||
@ -780,11 +894,20 @@ Memory is allocated when reading. The following function frees memory.
|
||||
$group$_t* $group$ = file->$group$;
|
||||
<span style="color: #a020f0;">if</span> ($group$ == <span style="color: #008b8b;">NULL</span>) <span style="color: #a020f0;">return</span> TREXIO_SUCCESS;
|
||||
|
||||
// <span style="color: #b22222;">START REPEAT GROUP_DSET</span>
|
||||
// <span style="color: #b22222;">START REPEAT GROUP_DSET_NUM</span>
|
||||
<span style="color: #a020f0;">if</span> ($group$->$group_dset$ != <span style="color: #008b8b;">NULL</span>) FREE ($group$->$group_dset$);
|
||||
// <span style="color: #b22222;">END REPEAT GROUP_DSET_NUM</span>
|
||||
|
||||
// <span style="color: #b22222;">START REPEAT GROUP_DSET_STR</span>
|
||||
<span style="color: #a020f0;">if</span> ($group$->$group_dset$ != <span style="color: #008b8b;">NULL</span>) {
|
||||
<span style="color: #a020f0;">if</span>($group$->rank_$group_dset$ != 0) FREE ($group$->$group_dset$[0]);
|
||||
FREE ($group$->$group_dset$);
|
||||
}
|
||||
// <span style="color: #b22222;">END REPEAT GROUP_DSET</span>
|
||||
// <span style="color: #b22222;">END REPEAT GROUP_DSET_STR</span>
|
||||
|
||||
// <span style="color: #b22222;">START REPEAT GROUP_ATTR_STR</span>
|
||||
<span style="color: #a020f0;">if</span> ($group$->$group_str$ != <span style="color: #008b8b;">NULL</span>) FREE ($group$->$group_str$);
|
||||
// <span style="color: #b22222;">END REPEAT GROUP_ATTR_STR</span>
|
||||
|
||||
FREE ($group$);
|
||||
<span style="color: #a020f0;">return</span> TREXIO_SUCCESS;
|
||||
@ -795,8 +918,8 @@ Memory is allocated when reading. The following function frees memory.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgad26516" class="outline-3">
|
||||
<h3 id="orgad26516"><span class="section-number-3">1.8</span> Template for has/read/write the <code>$group_num$</code> attribute</h3>
|
||||
<div id="outline-container-org24e7806" class="outline-3">
|
||||
<h3 id="org24e7806"><span class="section-number-3">1.8</span> Template for has/read/write the num attribute</h3>
|
||||
<div class="outline-text-3" id="text-1-8">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">trexio_exit_code</span>
|
||||
@ -858,8 +981,8 @@ Memory is allocated when reading. The following function frees memory.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org2f91d61" class="outline-3">
|
||||
<h3 id="org2f91d61"><span class="section-number-3">1.9</span> Template for has/read/write the <code>$group_dset$</code> dataset</h3>
|
||||
<div id="outline-container-orge76dae8" class="outline-3">
|
||||
<h3 id="orge76dae8"><span class="section-number-3">1.9</span> Template for has/read/write the dataset of numerical data</h3>
|
||||
<div class="outline-text-3" id="text-1-9">
|
||||
<p>
|
||||
The <code>group_dset</code> array is assumed allocated with the appropriate size.
|
||||
@ -880,7 +1003,7 @@ The <code>group_dset</code> array is assumed allocated with the appropriate size
|
||||
<span style="color: #a020f0;">if</span> (rank != $group$->rank_$group_dset$) <span style="color: #a020f0;">return</span> TREXIO_INVALID_ARG_3;
|
||||
|
||||
<span style="color: #228b22;">uint64_t</span> <span style="color: #a0522d;">dim_size</span> = 1;
|
||||
<span style="color: #a020f0;">for</span> (<span style="color: #228b22;">unsigned</span> <span style="color: #228b22;">int</span> <span style="color: #a0522d;">i</span>=0; i<rank; ++i){
|
||||
<span style="color: #a020f0;">for</span> (<span style="color: #228b22;">uint32_t</span> <span style="color: #a0522d;">i</span>=0; i<rank; ++i){
|
||||
<span style="color: #a020f0;">if</span> (dims[i] != $group$->dims_$group_dset$[i]) <span style="color: #a020f0;">return</span> TREXIO_INVALID_ARG_4;
|
||||
dim_size *= dims[i];
|
||||
}
|
||||
@ -916,7 +1039,7 @@ The <code>group_dset</code> array is assumed allocated with the appropriate size
|
||||
$group$->rank_$group_dset$ = rank;
|
||||
|
||||
<span style="color: #228b22;">uint64_t</span> <span style="color: #a0522d;">dim_size</span> = 1;
|
||||
<span style="color: #a020f0;">for</span> (<span style="color: #228b22;">unsigned</span> <span style="color: #228b22;">int</span> <span style="color: #a0522d;">i</span>=0; i<$group$->rank_$group_dset$; ++i){
|
||||
<span style="color: #a020f0;">for</span> (<span style="color: #228b22;">uint32_t</span> <span style="color: #a0522d;">i</span>=0; i<$group$->rank_$group_dset$; ++i){
|
||||
$group$->dims_$group_dset$[i] = dims[i];
|
||||
dim_size *= dims[i];
|
||||
}
|
||||
@ -955,14 +1078,191 @@ The <code>group_dset</code> array is assumed allocated with the appropriate size
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgbcff4b0" class="outline-3">
|
||||
<h3 id="orgbcff4b0"><span class="section-number-3">1.10</span> RDM struct (hard-coded)</h3>
|
||||
<div id="outline-container-org5f5a080" class="outline-3">
|
||||
<h3 id="org5f5a080"><span class="section-number-3">1.10</span> Template for has/read/write the dataset of strings</h3>
|
||||
<div class="outline-text-3" id="text-1-10">
|
||||
<p>
|
||||
The <code>group_dset</code> array is assumed allocated with the appropriate size.
|
||||
</p>
|
||||
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">trexio_exit_code</span>
|
||||
<span style="color: #0000ff;">trexio_text_read_$group_dset$</span> (<span style="color: #228b22;">trexio_t</span>* <span style="color: #a020f0;">const</span> <span style="color: #a0522d;">file</span>, <span style="color: #228b22;">char</span>* <span style="color: #a020f0;">const</span> <span style="color: #a0522d;">dset</span>, <span style="color: #a020f0;">const</span> <span style="color: #228b22;">uint32_t</span> <span style="color: #a0522d;">rank</span>, <span style="color: #a020f0;">const</span> <span style="color: #228b22;">uint64_t</span>* <span style="color: #a0522d;">dims</span>, <span style="color: #a020f0;">const</span> <span style="color: #228b22;">uint32_t</span> <span style="color: #a0522d;">max_str_len</span>)
|
||||
{
|
||||
|
||||
<span style="color: #a020f0;">if</span> (file == <span style="color: #008b8b;">NULL</span>) <span style="color: #a020f0;">return</span> TREXIO_INVALID_ARG_1;
|
||||
<span style="color: #a020f0;">if</span> (dset == <span style="color: #008b8b;">NULL</span>) <span style="color: #a020f0;">return</span> TREXIO_INVALID_ARG_2;
|
||||
|
||||
$group$_t* <span style="color: #a020f0;">const</span> $group$ = trexio_text_read_$group$((<span style="color: #228b22;">trexio_text_t</span>*) file);
|
||||
<span style="color: #a020f0;">if</span> ($group$ == <span style="color: #008b8b;">NULL</span>) <span style="color: #a020f0;">return</span> TREXIO_FAILURE;
|
||||
|
||||
<span style="color: #a020f0;">if</span> (rank != $group$->rank_$group_dset$) <span style="color: #a020f0;">return</span> TREXIO_INVALID_ARG_3;
|
||||
|
||||
<span style="color: #a020f0;">for</span> (<span style="color: #228b22;">uint32_t</span> <span style="color: #a0522d;">i</span>=0 ; i<rank ; ++i) {
|
||||
<span style="color: #a020f0;">if</span> (dims[i] != $group$->dims_$group_dset$[i]) <span style="color: #a020f0;">return</span> TREXIO_INVALID_ARG_4;
|
||||
}
|
||||
|
||||
strcpy(dset, <span style="color: #8b2252;">""</span>);
|
||||
<span style="color: #a020f0;">for</span> (<span style="color: #228b22;">uint64_t</span> <span style="color: #a0522d;">i</span>=0 ; i<dims[0] ; ++i) {
|
||||
strncat(dset, $group$->$group_dset$[i], max_str_len);
|
||||
strcat(dset, TREXIO_DELIM);
|
||||
}
|
||||
|
||||
<span style="color: #a020f0;">return</span> TREXIO_SUCCESS;
|
||||
|
||||
}
|
||||
</pre>
|
||||
</div>
|
||||
<div id="outline-container-orgd4e1776" class="outline-4">
|
||||
<h4 id="orgd4e1776"><span class="section-number-4">1.10.1</span> Read the complete struct</h4>
|
||||
<div class="outline-text-4" id="text-1-10-1">
|
||||
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">trexio_exit_code</span>
|
||||
<span style="color: #0000ff;">trexio_text_write_$group_dset$</span> (<span style="color: #228b22;">trexio_t</span>* <span style="color: #a020f0;">const</span> <span style="color: #a0522d;">file</span>, <span style="color: #a020f0;">const</span> <span style="color: #228b22;">char</span>** <span style="color: #a0522d;">dset</span>, <span style="color: #a020f0;">const</span> <span style="color: #228b22;">uint32_t</span> <span style="color: #a0522d;">rank</span>, <span style="color: #a020f0;">const</span> <span style="color: #228b22;">uint64_t</span>* <span style="color: #a0522d;">dims</span>)
|
||||
{
|
||||
|
||||
<span style="color: #a020f0;">if</span> (file == <span style="color: #008b8b;">NULL</span>) <span style="color: #a020f0;">return</span> TREXIO_INVALID_ARG_1;
|
||||
<span style="color: #a020f0;">if</span> (dset == <span style="color: #008b8b;">NULL</span>) <span style="color: #a020f0;">return</span> TREXIO_INVALID_ARG_2;
|
||||
|
||||
<span style="color: #a020f0;">if</span> (file->mode == <span style="color: #8b2252;">'r'</span>) <span style="color: #a020f0;">return</span> TREXIO_READONLY;
|
||||
|
||||
$group$_t* <span style="color: #a020f0;">const</span> $group$ = trexio_text_read_$group$((<span style="color: #228b22;">trexio_text_t</span>*) file);
|
||||
<span style="color: #a020f0;">if</span> ($group$ == <span style="color: #008b8b;">NULL</span>) <span style="color: #a020f0;">return</span> TREXIO_FAILURE;
|
||||
|
||||
<span style="color: #a020f0;">if</span> ($group$->$group_dset$ != <span style="color: #008b8b;">NULL</span>) {
|
||||
<span style="color: #a020f0;">if</span> ($group$->rank_$group_dset$ != 0) FREE($group$->$group_dset$[0]);
|
||||
FREE($group$->$group_dset$);
|
||||
}
|
||||
|
||||
$group$->rank_$group_dset$ = rank;
|
||||
|
||||
<span style="color: #a020f0;">for</span> (<span style="color: #228b22;">uint32_t</span> <span style="color: #a0522d;">i</span>=0; i<$group$->rank_$group_dset$; ++i){
|
||||
$group$->dims_$group_dset$[i] = dims[i];
|
||||
}
|
||||
|
||||
$group$->$group_dset$ = CALLOC(dims[0], <span style="color: #228b22;">char</span>*);
|
||||
<span style="color: #a020f0;">if</span> ($group$->$group_dset$ == <span style="color: #008b8b;">NULL</span>) <span style="color: #a020f0;">return</span> TREXIO_ALLOCATION_FAILED;
|
||||
|
||||
<span style="color: #228b22;">char</span>* <span style="color: #a0522d;">tmp_str</span> = CALLOC(dims[0]*32 + 1, <span style="color: #228b22;">char</span>);
|
||||
<span style="color: #a020f0;">if</span> (tmp_str == <span style="color: #008b8b;">NULL</span>) <span style="color: #a020f0;">return</span> TREXIO_ALLOCATION_FAILED;
|
||||
|
||||
<span style="color: #228b22;">size_t</span> <span style="color: #a0522d;">tmp_len</span> = 0;
|
||||
<span style="color: #a020f0;">for</span> (<span style="color: #228b22;">uint64_t</span> <span style="color: #a0522d;">i</span>=0 ; i<dims[0] ; ++i) {
|
||||
tmp_len = strlen(dset[i]);
|
||||
$group$->$group_dset$[i] = tmp_str;
|
||||
strncpy(tmp_str, dset[i], tmp_len);
|
||||
tmp_str += tmp_len + 1;
|
||||
}
|
||||
|
||||
$group$->to_flush = 1;
|
||||
|
||||
<span style="color: #a020f0;">return</span> TREXIO_SUCCESS;
|
||||
|
||||
}
|
||||
</pre>
|
||||
</div>
|
||||
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">trexio_exit_code</span>
|
||||
<span style="color: #0000ff;">trexio_text_has_$group_dset$</span> (<span style="color: #228b22;">trexio_t</span>* <span style="color: #a020f0;">const</span> <span style="color: #a0522d;">file</span>)
|
||||
{
|
||||
|
||||
<span style="color: #a020f0;">if</span> (file == <span style="color: #008b8b;">NULL</span>) <span style="color: #a020f0;">return</span> TREXIO_INVALID_ARG_1;
|
||||
|
||||
$group$_t* <span style="color: #a020f0;">const</span> $group$ = trexio_text_read_$group$((<span style="color: #228b22;">trexio_text_t</span>*) file);
|
||||
<span style="color: #a020f0;">if</span> ($group$ == <span style="color: #008b8b;">NULL</span>) <span style="color: #a020f0;">return</span> TREXIO_FAILURE;
|
||||
|
||||
<span style="color: #a020f0;">if</span> ($group$->rank_$group_dset$ > 0){
|
||||
<span style="color: #a020f0;">return</span> TREXIO_SUCCESS;
|
||||
} <span style="color: #a020f0;">else</span> {
|
||||
<span style="color: #a020f0;">return</span> TREXIO_HAS_NOT;
|
||||
}
|
||||
|
||||
}
|
||||
</pre>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
<div id="outline-container-org86c8d38" class="outline-3">
|
||||
<h3 id="org86c8d38"><span class="section-number-3">1.11</span> Template for has/read/write the string attribute</h3>
|
||||
<div class="outline-text-3" id="text-1-11">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">trexio_exit_code</span>
|
||||
<span style="color: #0000ff;">trexio_text_read_$group_str$</span> (<span style="color: #228b22;">trexio_t</span>* <span style="color: #a020f0;">const</span> <span style="color: #a0522d;">file</span>, <span style="color: #228b22;">char</span>* <span style="color: #a020f0;">const</span> <span style="color: #a0522d;">str</span>, <span style="color: #a020f0;">const</span> <span style="color: #228b22;">uint32_t</span> <span style="color: #a0522d;">max_str_len</span>)
|
||||
{
|
||||
|
||||
<span style="color: #a020f0;">if</span> (file == <span style="color: #008b8b;">NULL</span>) <span style="color: #a020f0;">return</span> TREXIO_INVALID_ARG_1;
|
||||
<span style="color: #a020f0;">if</span> (str == <span style="color: #008b8b;">NULL</span>) <span style="color: #a020f0;">return</span> TREXIO_INVALID_ARG_2;
|
||||
|
||||
$group$_t* <span style="color: #a020f0;">const</span> $group$ = trexio_text_read_$group$((<span style="color: #228b22;">trexio_text_t</span>*) file);
|
||||
<span style="color: #a020f0;">if</span> ($group$ == <span style="color: #008b8b;">NULL</span>) <span style="color: #a020f0;">return</span> TREXIO_FAILURE;
|
||||
|
||||
strncpy(str, $group$->$group_str$, max_str_len);
|
||||
|
||||
<span style="color: #a020f0;">return</span> TREXIO_SUCCESS;
|
||||
|
||||
}
|
||||
</pre>
|
||||
</div>
|
||||
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">trexio_exit_code</span>
|
||||
<span style="color: #0000ff;">trexio_text_write_$group_str$</span> (<span style="color: #228b22;">trexio_t</span>* <span style="color: #a020f0;">const</span> <span style="color: #a0522d;">file</span>, <span style="color: #a020f0;">const</span> <span style="color: #228b22;">char</span> *<span style="color: #a0522d;">str</span>)
|
||||
{
|
||||
|
||||
<span style="color: #a020f0;">if</span> (file == <span style="color: #008b8b;">NULL</span>) <span style="color: #a020f0;">return</span> TREXIO_INVALID_ARG_1;
|
||||
<span style="color: #a020f0;">if</span> (str == <span style="color: #008b8b;">NULL</span>) <span style="color: #a020f0;">return</span> TREXIO_INVALID_ARG_2;
|
||||
|
||||
<span style="color: #a020f0;">if</span> (file->mode == <span style="color: #8b2252;">'r'</span>) <span style="color: #a020f0;">return</span> TREXIO_READONLY;
|
||||
|
||||
$group$_t* <span style="color: #a020f0;">const</span> $group$ = trexio_text_read_$group$((<span style="color: #228b22;">trexio_text_t</span>*) file);
|
||||
<span style="color: #a020f0;">if</span> ($group$ == <span style="color: #008b8b;">NULL</span>) <span style="color: #a020f0;">return</span> TREXIO_FAILURE;
|
||||
|
||||
<span style="color: #a020f0;">if</span> ($group$->$group_str$ != <span style="color: #008b8b;">NULL</span>) FREE($group$->$group_str$);
|
||||
|
||||
<span style="color: #228b22;">size_t</span> <span style="color: #a0522d;">tmp_len</span> = strlen(str);
|
||||
|
||||
$group$->$group_str$ = CALLOC(tmp_len + 1, <span style="color: #228b22;">char</span>);
|
||||
<span style="color: #a020f0;">if</span> ($group$->$group_str$ == <span style="color: #008b8b;">NULL</span>) <span style="color: #a020f0;">return</span> TREXIO_ALLOCATION_FAILED;
|
||||
|
||||
$group$->len_$group_str$ = tmp_len + 1;
|
||||
|
||||
strncpy($group$->$group_str$, str, tmp_len + 1);
|
||||
|
||||
$group$->to_flush = 1;
|
||||
|
||||
<span style="color: #a020f0;">return</span> TREXIO_SUCCESS;
|
||||
|
||||
}
|
||||
</pre>
|
||||
</div>
|
||||
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">trexio_exit_code</span>
|
||||
<span style="color: #0000ff;">trexio_text_has_$group_str$</span> (<span style="color: #228b22;">trexio_t</span>* <span style="color: #a020f0;">const</span> <span style="color: #a0522d;">file</span>)
|
||||
{
|
||||
|
||||
<span style="color: #a020f0;">if</span> (file == <span style="color: #008b8b;">NULL</span>) <span style="color: #a020f0;">return</span> TREXIO_INVALID_ARG_1;
|
||||
|
||||
$group$_t* <span style="color: #a020f0;">const</span> $group$ = trexio_text_read_$group$((<span style="color: #228b22;">trexio_text_t</span>*) file);
|
||||
<span style="color: #a020f0;">if</span> ($group$ == <span style="color: #008b8b;">NULL</span>) <span style="color: #a020f0;">return</span> TREXIO_FAILURE;
|
||||
|
||||
<span style="color: #a020f0;">if</span> ($group$->len_$group_str$ > 0){
|
||||
<span style="color: #a020f0;">return</span> TREXIO_SUCCESS;
|
||||
} <span style="color: #a020f0;">else</span> {
|
||||
<span style="color: #a020f0;">return</span> TREXIO_HAS_NOT;
|
||||
}
|
||||
|
||||
}
|
||||
</pre>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
<div id="outline-container-org742b9cb" class="outline-3">
|
||||
<h3 id="org742b9cb"><span class="section-number-3">1.12</span> RDM struct (hard-coded)</h3>
|
||||
<div class="outline-text-3" id="text-1-12">
|
||||
</div>
|
||||
<div id="outline-container-orgabe2d7f" class="outline-4">
|
||||
<h4 id="orgabe2d7f"><span class="section-number-4">1.12.1</span> Read the complete struct</h4>
|
||||
<div class="outline-text-4" id="text-1-12-1">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">rdm_t</span>* <span style="color: #0000ff;">trexio_text_read_rdm</span>(<span style="color: #228b22;">trexio_text_t</span>* <span style="color: #a020f0;">const</span> <span style="color: #a0522d;">file</span>);
|
||||
</pre>
|
||||
@ -1056,9 +1356,9 @@ The <code>group_dset</code> array is assumed allocated with the appropriate size
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org5029913" class="outline-4">
|
||||
<h4 id="org5029913"><span class="section-number-4">1.10.2</span> Flush the complete struct</h4>
|
||||
<div class="outline-text-4" id="text-1-10-2">
|
||||
<div id="outline-container-orgc55cf6f" class="outline-4">
|
||||
<h4 id="orgc55cf6f"><span class="section-number-4">1.12.2</span> Flush the complete struct</h4>
|
||||
<div class="outline-text-4" id="text-1-12-2">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">trexio_exit_code</span> <span style="color: #0000ff;">trexio_text_flush_rdm</span>(<span style="color: #228b22;">trexio_text_t</span>* <span style="color: #a020f0;">const</span> <span style="color: #a0522d;">file</span>);
|
||||
</pre>
|
||||
@ -1099,9 +1399,9 @@ The <code>group_dset</code> array is assumed allocated with the appropriate size
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org76c677e" class="outline-4">
|
||||
<h4 id="org76c677e"><span class="section-number-4">1.10.3</span> Free memory</h4>
|
||||
<div class="outline-text-4" id="text-1-10-3">
|
||||
<div id="outline-container-org3745b0e" class="outline-4">
|
||||
<h4 id="org3745b0e"><span class="section-number-4">1.12.3</span> Free memory</h4>
|
||||
<div class="outline-text-4" id="text-1-12-3">
|
||||
<p>
|
||||
Memory is allocated when reading. The followig function frees memory.
|
||||
</p>
|
||||
@ -1136,9 +1436,9 @@ Memory is allocated when reading. The followig function frees memory.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org1c54582" class="outline-4">
|
||||
<h4 id="org1c54582"><span class="section-number-4">1.10.4</span> Read/Write the one<sub>e</sub> attribute</h4>
|
||||
<div class="outline-text-4" id="text-1-10-4">
|
||||
<div id="outline-container-orgf9cdf06" class="outline-4">
|
||||
<h4 id="orgf9cdf06"><span class="section-number-4">1.12.4</span> Read/Write the one<sub>e</sub> attribute</h4>
|
||||
<div class="outline-text-4" id="text-1-12-4">
|
||||
<p>
|
||||
The <code>one_e</code> array is assumed allocated with the appropriate size.
|
||||
</p>
|
||||
@ -1203,9 +1503,9 @@ The <code>one_e</code> array is assumed allocated with the appropriate size.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgb30e092" class="outline-4">
|
||||
<h4 id="orgb30e092"><span class="section-number-4">1.10.5</span> Read/Write the two<sub>e</sub> attribute</h4>
|
||||
<div class="outline-text-4" id="text-1-10-5">
|
||||
<div id="outline-container-orga56f485" class="outline-4">
|
||||
<h4 id="orga56f485"><span class="section-number-4">1.12.5</span> Read/Write the two<sub>e</sub> attribute</h4>
|
||||
<div class="outline-text-4" id="text-1-12-5">
|
||||
<p>
|
||||
<code>two_e</code> is a sparse data structure, which can be too large to fit
|
||||
in memory. So we provide functions to read and write it by
|
||||
@ -1312,7 +1612,7 @@ file for each sparse float structure.
|
||||
</div>
|
||||
<div id="postamble" class="status">
|
||||
<p class="author">Author: TREX-CoE</p>
|
||||
<p class="date">Created: 2021-06-14 Mon 07:35</p>
|
||||
<p class="date">Created: 2021-06-15 Tue 10:12</p>
|
||||
<p class="validation"><a href="http://validator.w3.org/check?uri=referer">Validate</a></p>
|
||||
</div>
|
||||
</body>
|
||||
|
||||
Loading…
Reference in New Issue
Block a user