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4
README.html
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"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
<head>
<!-- 2021-05-05 Wed 16:18 -->
<!-- 2021-05-06 Thu 07:26 -->
<meta http-equiv="Content-Type" content="text/html;charset=utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1" />
<title>TREXIO source code documentation</title>
@ -341,7 +341,7 @@ and bug reports should be submitted at
</div>
<div id="postamble" class="status">
<p class="author">Author: TREX-CoE</p>
<p class="date">Created: 2021-05-05 Wed 16:18</p>
<p class="date">Created: 2021-05-06 Thu 07:26</p>
<p class="validation"><a href="http://validator.w3.org/check?uri=referer">Validate</a></p>
</div>
</body>

4
index.html
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"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
<head>
<!-- 2021-05-05 Wed 16:18 -->
<!-- 2021-05-06 Thu 07:26 -->
<meta http-equiv="Content-Type" content="text/html;charset=utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1" />
<title>TREXIO source code documentation</title>
@ -341,7 +341,7 @@ and bug reports should be submitted at
</div>
<div id="postamble" class="status">
<p class="author">Author: TREX-CoE</p>
<p class="date">Created: 2021-05-05 Wed 16:18</p>
<p class="date">Created: 2021-05-06 Thu 07:26</p>
<p class="validation"><a href="http://validator.w3.org/check?uri=referer">Validate</a></p>
</div>
</body>

114
templator_front.html
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"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
<head>
<!-- 2021-05-05 Wed 16:18 -->
<!-- 2021-05-06 Thu 07:26 -->
<meta http-equiv="Content-Type" content="text/html;charset=utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1" />
<title>Front end API</title>
@ -311,45 +311,45 @@ for the JavaScript code in this tag.
<h2>Table of Contents</h2>
<div id="text-table-of-contents">
<ul>
<li><a href="#org2306c63">1. Coding conventions</a>
<li><a href="#org83100e5">1. Coding conventions</a>
<ul>
<li><a href="#org9d76dbd">1.1. Memory allocation</a></li>
<li><a href="#orgd94b748">1.1. Memory allocation</a></li>
</ul>
</li>
<li><a href="#org6381a7d">2. Front end</a>
<li><a href="#org590b4b6">2. Front end</a>
<ul>
<li><a href="#org96d9246">2.1. Error handling</a></li>
<li><a href="#org7c7e5be">2.2. Back ends</a></li>
<li><a href="#orga6763dc">2.3. Read/write behavior</a></li>
<li><a href="#org119ae02">2.4. TREXIO file type</a></li>
<li><a href="#org4fdc3a8">2.5. Polymorphism of the file handle</a></li>
<li><a href="#org3402512">2.6. File opening</a></li>
<li><a href="#org3376549">2.7. File closing</a></li>
<li><a href="#orgf7f8d28">2.1. Error handling</a></li>
<li><a href="#orgf9fca88">2.2. Back ends</a></li>
<li><a href="#org530f256">2.3. Read/write behavior</a></li>
<li><a href="#orgc3a8379">2.4. TREXIO file type</a></li>
<li><a href="#org17a9030">2.5. Polymorphism of the file handle</a></li>
<li><a href="#org269b651">2.6. File opening</a></li>
<li><a href="#org1dfe065">2.7. File closing</a></li>
</ul>
</li>
<li><a href="#orga89c4a0">3. Templates for front end</a>
<li><a href="#org32d637c">3. Templates for front end</a>
<ul>
<li><a href="#org9b4ffa7">3.1. Templates for front end has/read/write a dimension</a>
<li><a href="#org4167bbf">3.1. Templates for front end has/read/write a dimension</a>
<ul>
<li><a href="#orgacf427c">3.1.1. C templates for front end</a></li>
<li><a href="#orgc6b0080">3.1.2. Fortran templates for front end</a></li>
<li><a href="#org1394ae1">3.1.1. C templates for front end</a></li>
<li><a href="#org90fbeca">3.1.2. Fortran templates for front end</a></li>
</ul>
</li>
<li><a href="#org243f392">3.2. Templates for front end has/read/write a dataset</a>
<li><a href="#orgb218410">3.2. Templates for front end has/read/write a dataset</a>
<ul>
<li><a href="#orgfd0b655">3.2.1. C templates for front end</a></li>
<li><a href="#orgaa5a68f">3.2.2. Fortran templates for front end</a></li>
<li><a href="#orgcd66ad0">3.2.1. C templates for front end</a></li>
<li><a href="#orged759ce">3.2.2. Fortran templates for front end</a></li>
</ul>
</li>
</ul>
</li>
<li><a href="#orgb091d39">4. Fortran helper/wrapper functions</a></li>
<li><a href="#org2a63326">4. Fortran helper/wrapper functions</a></li>
</ul>
</div>
</div>
<div id="outline-container-org2306c63" class="outline-2">
<h2 id="org2306c63"><span class="section-number-2">1</span> Coding conventions</h2>
<div id="outline-container-org83100e5" class="outline-2">
<h2 id="org83100e5"><span class="section-number-2">1</span> Coding conventions</h2>
<div class="outline-text-2" id="text-1">
<ul class="org-ul">
<li>integer types will be defined using types given in <code>stdint.h</code></li>
@ -364,8 +364,8 @@ for the JavaScript code in this tag.
</ul>
</div>
<div id="outline-container-org9d76dbd" class="outline-3">
<h3 id="org9d76dbd"><span class="section-number-3">1.1</span> Memory allocation</h3>
<div id="outline-container-orgd94b748" class="outline-3">
<h3 id="orgd94b748"><span class="section-number-3">1.1</span> Memory allocation</h3>
<div class="outline-text-3" id="text-1-1">
<p>
Memory allocation of structures can be facilitated by using the
@ -399,8 +399,8 @@ The maximum string size for the filenames is 4096 characters.
</div>
</div>
</div>
<div id="outline-container-org6381a7d" class="outline-2">
<h2 id="org6381a7d"><span class="section-number-2">2</span> Front end</h2>
<div id="outline-container-org590b4b6" class="outline-2">
<h2 id="org590b4b6"><span class="section-number-2">2</span> Front end</h2>
<div class="outline-text-2" id="text-2">
<p>
All calls to TREXIO are thread-safe.
@ -408,10 +408,10 @@ TREXIO front end is modular, which simplifies impelementation of new back ends.
</p>
</div>
<div id="outline-container-org96d9246" class="outline-3">
<h3 id="org96d9246"><span class="section-number-3">2.1</span> Error handling</h3>
<div id="outline-container-orgf7f8d28" class="outline-3">
<h3 id="orgf7f8d28"><span class="section-number-3">2.1</span> Error handling</h3>
<div class="outline-text-3" id="text-2-1">
<table id="orgc65968b" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
<table id="orgb3a40ab" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
<colgroup>
@ -612,8 +612,8 @@ The text strings are extracted from the previous table.
</div>
</div>
<div id="outline-container-org7c7e5be" class="outline-3">
<h3 id="org7c7e5be"><span class="section-number-3">2.2</span> Back ends</h3>
<div id="outline-container-orgf9fca88" class="outline-3">
<h3 id="orgf9fca88"><span class="section-number-3">2.2</span> Back ends</h3>
<div class="outline-text-3" id="text-2-2">
<p>
TREXIO has several back ends:
@ -643,8 +643,8 @@ lines that correspond to the <code>TREXIO_JSON</code> back end (not implemented
</div>
</div>
</div>
<div id="outline-container-orga6763dc" class="outline-3">
<h3 id="orga6763dc"><span class="section-number-3">2.3</span> Read/write behavior</h3>
<div id="outline-container-org530f256" class="outline-3">
<h3 id="org530f256"><span class="section-number-3">2.3</span> Read/write behavior</h3>
<div class="outline-text-3" id="text-2-3">
<p>
Every time a reading function is called, the data is read from the
@ -672,8 +672,8 @@ concurrent programs, the behavior is not specified.
</p>
</div>
</div>
<div id="outline-container-org119ae02" class="outline-3">
<h3 id="org119ae02"><span class="section-number-3">2.4</span> TREXIO file type</h3>
<div id="outline-container-orgc3a8379" class="outline-3">
<h3 id="orgc3a8379"><span class="section-number-3">2.4</span> TREXIO file type</h3>
<div class="outline-text-3" id="text-2-4">
<p>
<code>trexio_s</code> is the the main type for TREXIO files, visible to the users
@ -705,8 +705,8 @@ TREXIO files will have as a first argument the TREXIO file handle.
</div>
</div>
</div>
<div id="outline-container-org4fdc3a8" class="outline-3">
<h3 id="org4fdc3a8"><span class="section-number-3">2.5</span> Polymorphism of the file handle</h3>
<div id="outline-container-org17a9030" class="outline-3">
<h3 id="org17a9030"><span class="section-number-3">2.5</span> Polymorphism of the file handle</h3>
<div class="outline-text-3" id="text-2-5">
<p>
Polymorphism of the <code>trexio_t</code> type is handled by ensuring that the
@ -725,8 +725,8 @@ corresponding types for all back ends can be safely casted to
</div>
</div>
<div id="outline-container-org3402512" class="outline-3">
<h3 id="org3402512"><span class="section-number-3">2.6</span> File opening</h3>
<div id="outline-container-org269b651" class="outline-3">
<h3 id="org269b651"><span class="section-number-3">2.6</span> File opening</h3>
<div class="outline-text-3" id="text-2-6">
<p>
<code>trexio_open</code> creates a new TREXIO file or opens existing one.
@ -888,8 +888,8 @@ should tend to avoid renaming the <code>.txt</code> data files.
</div>
</div>
<div id="outline-container-org3376549" class="outline-3">
<h3 id="org3376549"><span class="section-number-3">2.7</span> File closing</h3>
<div id="outline-container-org1dfe065" class="outline-3">
<h3 id="org1dfe065"><span class="section-number-3">2.7</span> File closing</h3>
<div class="outline-text-3" id="text-2-7">
<p>
<code>trexio_close</code> closes an existing <code>trexio_t</code> file.
@ -988,8 +988,8 @@ output:
</div>
</div>
<div id="outline-container-orga89c4a0" class="outline-2">
<h2 id="orga89c4a0"><span class="section-number-2">3</span> Templates for front end</h2>
<div id="outline-container-org32d637c" class="outline-2">
<h2 id="org32d637c"><span class="section-number-2">3</span> Templates for front end</h2>
<div class="outline-text-2" id="text-3">
<p>
Consider the following block of <code>trex.json</code>:
@ -1150,8 +1150,8 @@ TREXIO supports I/O with single or double precision for integer and floating poi
</div>
<div id="outline-container-org9b4ffa7" class="outline-3">
<h3 id="org9b4ffa7"><span class="section-number-3">3.1</span> Templates for front end has/read/write a dimension</h3>
<div id="outline-container-org4167bbf" class="outline-3">
<h3 id="org4167bbf"><span class="section-number-3">3.1</span> Templates for front end has/read/write a dimension</h3>
<div class="outline-text-3" id="text-3-1">
<p>
This section concerns API calls related to dimensioning variables.
@ -1220,8 +1220,8 @@ This section concerns API calls related to dimensioning variables.
</table>
</div>
<div id="outline-container-orgacf427c" class="outline-4">
<h4 id="orgacf427c"><span class="section-number-4">3.1.1</span> C templates for front end</h4>
<div id="outline-container-org1394ae1" class="outline-4">
<h4 id="org1394ae1"><span class="section-number-4">3.1.1</span> C templates for front end</h4>
<div class="outline-text-4" id="text-3-1-1">
<p>
The <code>C</code> templates that correspond to each of the abovementioned functions can be found below.
@ -1410,8 +1410,8 @@ The basic (non-suffixed) API call on dimensioning variables deals with single pr
</div>
</div>
<div id="outline-container-orgc6b0080" class="outline-4">
<h4 id="orgc6b0080"><span class="section-number-4">3.1.2</span> Fortran templates for front end</h4>
<div id="outline-container-org90fbeca" class="outline-4">
<h4 id="org90fbeca"><span class="section-number-4">3.1.2</span> Fortran templates for front end</h4>
<div class="outline-text-4" id="text-3-1-2">
<p>
The <code>Fortran</code> templates that provide an access to the <code>C</code> API calls from Fortran.
@ -1498,8 +1498,8 @@ These templates are based on the use of <code>iso_c_binding</code>. Pointers hav
</div>
<div id="outline-container-org243f392" class="outline-3">
<h3 id="org243f392"><span class="section-number-3">3.2</span> Templates for front end has/read/write a dataset</h3>
<div id="outline-container-orgb218410" class="outline-3">
<h3 id="orgb218410"><span class="section-number-3">3.2</span> Templates for front end has/read/write a dataset</h3>
<div class="outline-text-3" id="text-3-2">
<p>
This section concerns API calls related to datasets.
@ -1568,8 +1568,8 @@ This section concerns API calls related to datasets.
</table>
</div>
<div id="outline-container-orgfd0b655" class="outline-4">
<h4 id="orgfd0b655"><span class="section-number-4">3.2.1</span> C templates for front end</h4>
<div id="outline-container-orgcd66ad0" class="outline-4">
<h4 id="orgcd66ad0"><span class="section-number-4">3.2.1</span> C templates for front end</h4>
<div class="outline-text-4" id="text-3-2-1">
<p>
The C templates that correspond to each of the abovementioned functions can be found below.
@ -1827,8 +1827,8 @@ The basic (non-suffixed) API call on datasets deals with double precision (see T
</div>
</div>
<div id="outline-container-orgaa5a68f" class="outline-4">
<h4 id="orgaa5a68f"><span class="section-number-4">3.2.2</span> Fortran templates for front end</h4>
<div id="outline-container-orged759ce" class="outline-4">
<h4 id="orged759ce"><span class="section-number-4">3.2.2</span> Fortran templates for front end</h4>
<div class="outline-text-4" id="text-3-2-2">
<p>
The <code>Fortran</code> templates that provide an access to the <code>C</code> API calls from <code>Fortran</code>.
@ -1915,8 +1915,8 @@ These templates are based on the use of <code>iso_c_binding</code>. Pointers hav
</div>
</div>
<div id="outline-container-orgb091d39" class="outline-2">
<h2 id="orgb091d39"><span class="section-number-2">4</span> Fortran helper/wrapper functions</h2>
<div id="outline-container-org2a63326" class="outline-2">
<h2 id="org2a63326"><span class="section-number-2">4</span> Fortran helper/wrapper functions</h2>
<div class="outline-text-2" id="text-4">
<p>
The function below adapts the original C-based <code>trexio_open</code> for Fortran.
@ -1945,7 +1945,7 @@ Note, that Fortran interface calls the main <code>TREXIO</code> API, which is wr
</div>
<div id="postamble" class="status">
<p class="author">Author: TREX-CoE</p>
<p class="date">Created: 2021-05-05 Wed 16:18</p>
<p class="date">Created: 2021-05-06 Thu 07:26</p>
<p class="validation"><a href="http://validator.w3.org/check?uri=referer">Validate</a></p>
</div>
</body>

42
templator_hdf5.html
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@ -3,7 +3,7 @@
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
<head>
<!-- 2021-05-05 Wed 16:18 -->
<!-- 2021-05-06 Thu 07:26 -->
<meta http-equiv="Content-Type" content="text/html;charset=utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1" />
<title>HDF5 back end</title>
@ -311,25 +311,25 @@ for the JavaScript code in this tag.
<h2>Table of Contents</h2>
<div id="text-table-of-contents">
<ul>
<li><a href="#orgae54eee">1. HDF5 back end</a>
<li><a href="#org58aa630">1. HDF5 back end</a>
<ul>
<li><a href="#orge5093fa">1.1. Template for HDF5 definitions</a></li>
<li><a href="#org8b7ea54">1.2. Template for HDF5 structures</a></li>
<li><a href="#org2f980e8">1.3. Template for HDF5 init/deinit</a></li>
<li><a href="#org166e330">1.4. Template for HDF5 has/read/write a number</a></li>
<li><a href="#org3f39a3c">1.5. Template for HDF5 has/read/write a dataset</a></li>
<li><a href="#org09757c0">1.1. Template for HDF5 definitions</a></li>
<li><a href="#orge7e0ca1">1.2. Template for HDF5 structures</a></li>
<li><a href="#org88cf9b5">1.3. Template for HDF5 init/deinit</a></li>
<li><a href="#org0e18ab9">1.4. Template for HDF5 has/read/write a number</a></li>
<li><a href="#org23d6da4">1.5. Template for HDF5 has/read/write a dataset</a></li>
</ul>
</li>
</ul>
</div>
</div>
<div id="outline-container-orgae54eee" class="outline-2">
<h2 id="orgae54eee"><span class="section-number-2">1</span> HDF5 back end</h2>
<div id="outline-container-org58aa630" class="outline-2">
<h2 id="org58aa630"><span class="section-number-2">1</span> HDF5 back end</h2>
<div class="outline-text-2" id="text-1">
</div>
<div id="outline-container-orge5093fa" class="outline-3">
<h3 id="orge5093fa"><span class="section-number-3">1.1</span> Template for HDF5 definitions</h3>
<div id="outline-container-org09757c0" class="outline-3">
<h3 id="org09757c0"><span class="section-number-3">1.1</span> Template for HDF5 definitions</h3>
<div class="outline-text-3" id="text-1-1">
<div class="org-src-container">
<pre class="src src-c"><span style="color: #483d8b;">#define</span> $GROUP$_GROUP_NAME <span style="color: #8b2252;">"$group$"</span>
@ -340,8 +340,8 @@ for the JavaScript code in this tag.
</div>
</div>
<div id="outline-container-org8b7ea54" class="outline-3">
<h3 id="org8b7ea54"><span class="section-number-3">1.2</span> Template for HDF5 structures</h3>
<div id="outline-container-orge7e0ca1" class="outline-3">
<h3 id="orge7e0ca1"><span class="section-number-3">1.2</span> Template for HDF5 structures</h3>
<div class="outline-text-3" id="text-1-2">
<div class="org-src-container">
<pre class="src src-c"><span style="color: #a020f0;">typedef</span> <span style="color: #a020f0;">struct</span> <span style="color: #228b22;">trexio_hdf5_s</span> {
@ -356,8 +356,8 @@ for the JavaScript code in this tag.
</div>
<div id="outline-container-org2f980e8" class="outline-3">
<h3 id="org2f980e8"><span class="section-number-3">1.3</span> Template for HDF5 init/deinit</h3>
<div id="outline-container-org88cf9b5" class="outline-3">
<h3 id="org88cf9b5"><span class="section-number-3">1.3</span> Template for HDF5 init/deinit</h3>
<div class="outline-text-3" id="text-1-3">
<div class="org-src-container">
<pre class="src src-c"><span style="color: #228b22;">trexio_exit_code</span>
@ -440,8 +440,8 @@ for the JavaScript code in this tag.
</div>
</div>
<div id="outline-container-org166e330" class="outline-3">
<h3 id="org166e330"><span class="section-number-3">1.4</span> Template for HDF5 has/read/write a number</h3>
<div id="outline-container-org0e18ab9" class="outline-3">
<h3 id="org0e18ab9"><span class="section-number-3">1.4</span> Template for HDF5 has/read/write a number</h3>
<div class="outline-text-3" id="text-1-4">
<div class="org-src-container">
<pre class="src src-c"><span style="color: #228b22;">trexio_exit_code</span>
@ -515,7 +515,7 @@ for the JavaScript code in this tag.
<span style="color: #a020f0;">if</span> (infile_num != num) {
<span style="color: #a020f0;">if</span> (infile_num != 0) {
printf(<span style="color: #8b2252;">"%lu -&gt; %lu %s \n"</span>, num, infile_num,
printf(<span style="color: #8b2252;">"%llu -&gt; %llu %s \n"</span>, num, infile_num,
<span style="color: #8b2252;">"This variable already exists. Overwriting it is not supported"</span>);
<span style="color: #a020f0;">return</span> TREXIO_FAILURE;
@ -564,8 +564,8 @@ for the JavaScript code in this tag.
</div>
</div>
<div id="outline-container-org3f39a3c" class="outline-3">
<h3 id="org3f39a3c"><span class="section-number-3">1.5</span> Template for HDF5 has/read/write a dataset</h3>
<div id="outline-container-org23d6da4" class="outline-3">
<h3 id="org23d6da4"><span class="section-number-3">1.5</span> Template for HDF5 has/read/write a dataset</h3>
<div class="outline-text-3" id="text-1-5">
<div class="org-src-container">
<pre class="src src-c"><span style="color: #228b22;">trexio_exit_code</span>
@ -699,7 +699,7 @@ for the JavaScript code in this tag.
</div>
<div id="postamble" class="status">
<p class="author">Author: TREX-CoE</p>
<p class="date">Created: 2021-05-05 Wed 16:18</p>
<p class="date">Created: 2021-05-06 Thu 07:26</p>
<p class="validation"><a href="http://validator.w3.org/check?uri=referer">Validate</a></p>
</div>
</body>

116
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@ -3,7 +3,7 @@
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
<head>
<!-- 2021-05-05 Wed 16:18 -->
<!-- 2021-05-06 Thu 07:26 -->
<meta http-equiv="Content-Type" content="text/html;charset=utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1" />
<title>TEXT back end</title>
@ -311,24 +311,24 @@ for the JavaScript code in this tag.
<h2>Table of Contents</h2>
<div id="text-table-of-contents">
<ul>
<li><a href="#orgbac3a54">1. TEXT back end</a>
<li><a href="#org7dc3f1f">1. TEXT back end</a>
<ul>
<li><a href="#orgac6af50">1.1. Template for group-related structures in text back end</a></li>
<li><a href="#org3bb84b0">1.2. Template for general structure in text back end</a></li>
<li><a href="#orga10b188">1.3. Initialize function (constant part)</a></li>
<li><a href="#org5fd00d1">1.4. Deinitialize function (templated part)</a></li>
<li><a href="#org39f209d">1.5. Template for text read struct</a></li>
<li><a href="#orgd417916">1.6. Template for text flush struct</a></li>
<li><a href="#orgde177bd">1.7. Template for text free memory</a></li>
<li><a href="#orgab3b7b1">1.8. Template for has/read/write the <code>$group_num$</code> attribute</a></li>
<li><a href="#org8cd6e08">1.9. Template for has/read/write the <code>$group_dset$</code> dataset</a></li>
<li><a href="#orga2c3450">1.10. RDM struct (hard-coded)</a>
<li><a href="#org670c2d5">1.1. Template for group-related structures in text back end</a></li>
<li><a href="#orgf7dc9df">1.2. Template for general structure in text back end</a></li>
<li><a href="#orgad59742">1.3. Initialize function (constant part)</a></li>
<li><a href="#org1020f33">1.4. Deinitialize function (templated part)</a></li>
<li><a href="#org2da2348">1.5. Template for text read struct</a></li>
<li><a href="#orgd7e9164">1.6. Template for text flush struct</a></li>
<li><a href="#org450577e">1.7. Template for text free memory</a></li>
<li><a href="#org2ee2f2b">1.8. Template for has/read/write the <code>$group_num$</code> attribute</a></li>
<li><a href="#orged6a8bd">1.9. Template for has/read/write the <code>$group_dset$</code> dataset</a></li>
<li><a href="#org7bd8598">1.10. RDM struct (hard-coded)</a>
<ul>
<li><a href="#org6b93964">1.10.1. Read the complete struct</a></li>
<li><a href="#org937acd4">1.10.2. Flush the complete struct</a></li>
<li><a href="#orgfcf44fa">1.10.3. Free memory</a></li>
<li><a href="#orgfbbdb6d">1.10.4. Read/Write the one<sub>e</sub> attribute</a></li>
<li><a href="#org126b1a1">1.10.5. Read/Write the two<sub>e</sub> attribute</a></li>
<li><a href="#org9ecec20">1.10.1. Read the complete struct</a></li>
<li><a href="#orgea20d9f">1.10.2. Flush the complete struct</a></li>
<li><a href="#org2bfdd42">1.10.3. Free memory</a></li>
<li><a href="#org5c16c75">1.10.4. Read/Write the one<sub>e</sub> attribute</a></li>
<li><a href="#orge4472a8">1.10.5. Read/Write the two<sub>e</sub> attribute</a></li>
</ul>
</li>
</ul>
@ -337,8 +337,8 @@ for the JavaScript code in this tag.
</div>
</div>
<div id="outline-container-orgbac3a54" class="outline-2">
<h2 id="orgbac3a54"><span class="section-number-2">1</span> TEXT back end</h2>
<div id="outline-container-org7dc3f1f" class="outline-2">
<h2 id="org7dc3f1f"><span class="section-number-2">1</span> TEXT back end</h2>
<div class="outline-text-2" id="text-1">
<p>
The "file" produced by the text back end is a directory with one
@ -359,8 +359,8 @@ The file is written when closed, or when the flush function is called.
</p>
</div>
<div id="outline-container-orgac6af50" class="outline-3">
<h3 id="orgac6af50"><span class="section-number-3">1.1</span> Template for group-related structures in text back end</h3>
<div id="outline-container-org670c2d5" class="outline-3">
<h3 id="org670c2d5"><span class="section-number-3">1.1</span> Template for group-related structures in text back end</h3>
<div class="outline-text-3" id="text-1-1">
<div class="org-src-container">
<pre class="src src-c"><span style="color: #a020f0;">typedef</span> <span style="color: #a020f0;">struct</span> $group$_s {
@ -376,8 +376,8 @@ The file is written when closed, or when the flush function is called.
</div>
</div>
<div id="outline-container-org3bb84b0" class="outline-3">
<h3 id="org3bb84b0"><span class="section-number-3">1.2</span> Template for general structure in text back end</h3>
<div id="outline-container-orgf7dc9df" class="outline-3">
<h3 id="orgf7dc9df"><span class="section-number-3">1.2</span> Template for general structure in text back end</h3>
<div class="outline-text-3" id="text-1-2">
<div class="org-src-container">
<pre class="src src-c"><span style="color: #a020f0;">typedef</span> <span style="color: #a020f0;">struct</span> <span style="color: #228b22;">rdm_s</span> {
@ -403,8 +403,8 @@ The file is written when closed, or when the flush function is called.
</div>
</div>
<div id="outline-container-orga10b188" class="outline-3">
<h3 id="orga10b188"><span class="section-number-3">1.3</span> Initialize function (constant part)</h3>
<div id="outline-container-orgad59742" class="outline-3">
<h3 id="orgad59742"><span class="section-number-3">1.3</span> Initialize function (constant part)</h3>
<div class="outline-text-3" id="text-1-3">
<div class="org-src-container">
<pre class="src src-c"><span style="color: #228b22;">trexio_exit_code</span>
@ -511,8 +511,8 @@ The file is written when closed, or when the flush function is called.
</div>
</div>
<div id="outline-container-org5fd00d1" class="outline-3">
<h3 id="org5fd00d1"><span class="section-number-3">1.4</span> Deinitialize function (templated part)</h3>
<div id="outline-container-org1020f33" class="outline-3">
<h3 id="org1020f33"><span class="section-number-3">1.4</span> Deinitialize function (templated part)</h3>
<div class="outline-text-3" id="text-1-4">
<div class="org-src-container">
<pre class="src src-c"><span style="color: #228b22;">trexio_exit_code</span>
@ -536,8 +536,8 @@ The file is written when closed, or when the flush function is called.
</div>
</div>
<div id="outline-container-org39f209d" class="outline-3">
<h3 id="org39f209d"><span class="section-number-3">1.5</span> Template for text read struct</h3>
<div id="outline-container-org2da2348" class="outline-3">
<h3 id="org2da2348"><span class="section-number-3">1.5</span> Template for text read struct</h3>
<div class="outline-text-3" id="text-1-5">
<div class="org-src-container">
<pre class="src src-c">$group$_t*
@ -632,7 +632,7 @@ trexio_text_read_$group$ (<span style="color: #228b22;">trexio_text_t</span>* <s
<span style="color: #a020f0;">return</span> <span style="color: #008b8b;">NULL</span>;
}
rc = fscanf(f, <span style="color: #8b2252;">"%lu\n"</span>, &amp;($group$-&gt;dims_$group_dset$[i]));
rc = fscanf(f, <span style="color: #8b2252;">"%llu\n"</span>, &amp;($group$-&gt;dims_$group_dset$[i]));
assert(!(rc != 1));
<span style="color: #a020f0;">if</span> (rc != 1) {
FREE(buffer);
@ -658,7 +658,7 @@ trexio_text_read_$group$ (<span style="color: #228b22;">trexio_text_t</span>* <s
<span style="color: #a020f0;">return</span> <span style="color: #008b8b;">NULL</span>;
}
rc = fscanf(f, <span style="color: #8b2252;">"%lu"</span>, &amp;($group$-&gt;$group_num$));
rc = fscanf(f, <span style="color: #8b2252;">"%llu"</span>, &amp;($group$-&gt;$group_num$));
assert(!(rc != 1));
<span style="color: #a020f0;">if</span> (rc != 1) {
FREE(buffer);
@ -734,8 +734,8 @@ trexio_text_read_$group$ (<span style="color: #228b22;">trexio_text_t</span>* <s
</div>
</div>
<div id="outline-container-orgd417916" class="outline-3">
<h3 id="orgd417916"><span class="section-number-3">1.6</span> Template for text flush struct</h3>
<div id="outline-container-orgd7e9164" class="outline-3">
<h3 id="orgd7e9164"><span class="section-number-3">1.6</span> Template for text flush struct</h3>
<div class="outline-text-3" id="text-1-6">
<div class="org-src-container">
<pre class="src src-c"><span style="color: #228b22;">trexio_exit_code</span>
@ -764,14 +764,14 @@ trexio_text_read_$group$ (<span style="color: #228b22;">trexio_text_t</span>* <s
<span style="color: #a020f0;">if</span> ($group$-&gt;rank_$group_dset$ != 0) size_$group_dset$ = 1;
<span style="color: #a020f0;">for</span> (<span style="color: #228b22;">unsigned</span> <span style="color: #228b22;">int</span> <span style="color: #a0522d;">i</span>=0; i&lt;$group$-&gt;rank_$group_dset$; ++i){
fprintf(f, <span style="color: #8b2252;">"dims_$group_dset$ %u %lu\n"</span>, i, $group$-&gt;dims_$group_dset$[i]);
fprintf(f, <span style="color: #8b2252;">"dims_$group_dset$ %u %llu\n"</span>, i, $group$-&gt;dims_$group_dset$[i]);
size_$group_dset$ *= $group$-&gt;dims_$group_dset$[i];
}
// <span style="color: #b22222;">END REPEAT GROUP_DSET</span>
// <span style="color: #b22222;">START REPEAT GROUP_NUM</span>
fprintf(f, <span style="color: #8b2252;">"$group_num$ %lu\n"</span>, $group$-&gt;$group_num$);
fprintf(f, <span style="color: #8b2252;">"$group_num$ %llu\n"</span>, $group$-&gt;$group_num$);
// <span style="color: #b22222;">END REPEAT GROUP_NUM</span>
/* <span style="color: #b22222;">Write arrays </span>*/
@ -793,8 +793,8 @@ trexio_text_read_$group$ (<span style="color: #228b22;">trexio_text_t</span>* <s
</div>
</div>
<div id="outline-container-orgde177bd" class="outline-3">
<h3 id="orgde177bd"><span class="section-number-3">1.7</span> Template for text free memory</h3>
<div id="outline-container-org450577e" class="outline-3">
<h3 id="org450577e"><span class="section-number-3">1.7</span> Template for text free memory</h3>
<div class="outline-text-3" id="text-1-7">
<p>
Memory is allocated when reading. The following function frees memory.
@ -835,8 +835,8 @@ Memory is allocated when reading. The following function frees memory.
</div>
</div>
<div id="outline-container-orgab3b7b1" class="outline-3">
<h3 id="orgab3b7b1"><span class="section-number-3">1.8</span> Template for has/read/write the <code>$group_num$</code> attribute</h3>
<div id="outline-container-org2ee2f2b" class="outline-3">
<h3 id="org2ee2f2b"><span class="section-number-3">1.8</span> Template for has/read/write the <code>$group_num$</code> attribute</h3>
<div class="outline-text-3" id="text-1-8">
<div class="org-src-container">
<pre class="src src-c"><span style="color: #228b22;">trexio_exit_code</span>
@ -898,8 +898,8 @@ Memory is allocated when reading. The following function frees memory.
</div>
</div>
<div id="outline-container-org8cd6e08" class="outline-3">
<h3 id="org8cd6e08"><span class="section-number-3">1.9</span> Template for has/read/write the <code>$group_dset$</code> dataset</h3>
<div id="outline-container-orged6a8bd" class="outline-3">
<h3 id="orged6a8bd"><span class="section-number-3">1.9</span> Template for has/read/write the <code>$group_dset$</code> dataset</h3>
<div class="outline-text-3" id="text-1-9">
<p>
The <code>group_dset</code> array is assumed allocated with the appropriate size.
@ -996,12 +996,12 @@ The <code>group_dset</code> array is assumed allocated with the appropriate size
</div>
</div>
<div id="outline-container-orga2c3450" class="outline-3">
<h3 id="orga2c3450"><span class="section-number-3">1.10</span> RDM struct (hard-coded)</h3>
<div id="outline-container-org7bd8598" class="outline-3">
<h3 id="org7bd8598"><span class="section-number-3">1.10</span> RDM struct (hard-coded)</h3>
<div class="outline-text-3" id="text-1-10">
</div>
<div id="outline-container-org6b93964" class="outline-4">
<h4 id="org6b93964"><span class="section-number-4">1.10.1</span> Read the complete struct</h4>
<div id="outline-container-org9ecec20" class="outline-4">
<h4 id="org9ecec20"><span class="section-number-4">1.10.1</span> Read the complete struct</h4>
<div class="outline-text-4" id="text-1-10-1">
<div class="org-src-container">
<pre class="src src-c"><span style="color: #228b22;">rdm_t</span>* <span style="color: #0000ff;">trexio_text_read_rdm</span>(<span style="color: #228b22;">trexio_text_t</span>* <span style="color: #a020f0;">const</span> <span style="color: #a0522d;">file</span>);
@ -1055,7 +1055,7 @@ The <code>group_dset</code> array is assumed allocated with the appropriate size
assert (rc == 1);
assert (strcmp(buffer, <span style="color: #8b2252;">"dim_one_e"</span>) == 0);
rc = fscanf(f, <span style="color: #8b2252;">"%lu"</span>, &amp;(rdm-&gt;dim_one_e));
rc = fscanf(f, <span style="color: #8b2252;">"%llu"</span>, &amp;(rdm-&gt;dim_one_e));
assert (rc == 1);
/* <span style="color: #b22222;">Allocate arrays </span>*/
@ -1109,8 +1109,8 @@ The <code>group_dset</code> array is assumed allocated with the appropriate size
</div>
</div>
<div id="outline-container-org937acd4" class="outline-4">
<h4 id="org937acd4"><span class="section-number-4">1.10.2</span> Flush the complete struct</h4>
<div id="outline-container-orgea20d9f" class="outline-4">
<h4 id="orgea20d9f"><span class="section-number-4">1.10.2</span> Flush the complete struct</h4>
<div class="outline-text-4" id="text-1-10-2">
<div class="org-src-container">
<pre class="src src-c"><span style="color: #228b22;">trexio_exit_code</span> <span style="color: #0000ff;">trexio_text_flush_rdm</span>(<span style="color: #228b22;">trexio_text_t</span>* <span style="color: #a020f0;">const</span> <span style="color: #a0522d;">file</span>);
@ -1133,7 +1133,7 @@ The <code>group_dset</code> array is assumed allocated with the appropriate size
fseek(f, 0L, SEEK_SET);
/* <span style="color: #b22222;">Write the dimensioning variables </span>*/
fprintf(f, <span style="color: #8b2252;">"num %lu\n"</span>, rdm-&gt;dim_one_e);
fprintf(f, <span style="color: #8b2252;">"num %llu\n"</span>, rdm-&gt;dim_one_e);
/* <span style="color: #b22222;">Write arrays </span>*/
fprintf(f, <span style="color: #8b2252;">"one_e\n"</span>);
@ -1153,8 +1153,8 @@ The <code>group_dset</code> array is assumed allocated with the appropriate size
</div>
</div>
<div id="outline-container-orgfcf44fa" class="outline-4">
<h4 id="orgfcf44fa"><span class="section-number-4">1.10.3</span> Free memory</h4>
<div id="outline-container-org2bfdd42" class="outline-4">
<h4 id="org2bfdd42"><span class="section-number-4">1.10.3</span> Free memory</h4>
<div class="outline-text-4" id="text-1-10-3">
<p>
Memory is allocated when reading. The followig function frees memory.
@ -1199,8 +1199,8 @@ Memory is allocated when reading. The followig function frees memory.
</div>
</div>
<div id="outline-container-orgfbbdb6d" class="outline-4">
<h4 id="orgfbbdb6d"><span class="section-number-4">1.10.4</span> Read/Write the one<sub>e</sub> attribute</h4>
<div id="outline-container-org5c16c75" class="outline-4">
<h4 id="org5c16c75"><span class="section-number-4">1.10.4</span> Read/Write the one<sub>e</sub> attribute</h4>
<div class="outline-text-4" id="text-1-10-4">
<p>
The <code>one_e</code> array is assumed allocated with the appropriate size.
@ -1266,8 +1266,8 @@ The <code>one_e</code> array is assumed allocated with the appropriate size.
</div>
</div>
<div id="outline-container-org126b1a1" class="outline-4">
<h4 id="org126b1a1"><span class="section-number-4">1.10.5</span> Read/Write the two<sub>e</sub> attribute</h4>
<div id="outline-container-orge4472a8" class="outline-4">
<h4 id="orge4472a8"><span class="section-number-4">1.10.5</span> Read/Write the two<sub>e</sub> attribute</h4>
<div class="outline-text-4" id="text-1-10-5">
<p>
<code>two_e</code> is a sparse data structure, which can be too large to fit
@ -1316,7 +1316,7 @@ file for each sparse float structure.
fseek(f, (<span style="color: #228b22;">long</span>) <span style="color: #228b22;">offset</span> * <span style="color: #a0522d;">line_length</span>, <span style="color: #a0522d;">SEEK_SET</span>);
<span style="color: #a020f0;">for</span> (<span style="color: #228b22;">uint64_t</span> <span style="color: #a0522d;">i</span>=0 ; i&lt;size ; ++i) {
<span style="color: #228b22;">int</span> <span style="color: #a0522d;">rc</span> = fscanf(f, <span style="color: #8b2252;">"%9ld %9ld %9ld %9ld %24le\n"</span>,
<span style="color: #228b22;">int</span> <span style="color: #a0522d;">rc</span> = fscanf(f, <span style="color: #8b2252;">"%9lld %9lld %9lld %9lld %24le\n"</span>,
&amp;index[4*i],
&amp;index[4*i+1],
&amp;index[4*i+2],
@ -1355,7 +1355,7 @@ file for each sparse float structure.
fseek(f, (<span style="color: #228b22;">long</span>) <span style="color: #228b22;">offset</span> * <span style="color: #a0522d;">line_length</span>, <span style="color: #a0522d;">SEEK_SET</span>);
<span style="color: #a020f0;">for</span> (<span style="color: #228b22;">uint64_t</span> <span style="color: #a0522d;">i</span>=0 ; i&lt;size ; ++i) {
<span style="color: #228b22;">int</span> <span style="color: #a0522d;">rc</span> = fprintf(f, <span style="color: #8b2252;">"%9ld %9ld %9ld %9ld %24le\n"</span>,
<span style="color: #228b22;">int</span> <span style="color: #a0522d;">rc</span> = fprintf(f, <span style="color: #8b2252;">"%9lld %9lld %9lld %9lld %24le\n"</span>,
index[4*i],
index[4*i+1],
index[4*i+2],
@ -1375,7 +1375,7 @@ file for each sparse float structure.
</div>
<div id="postamble" class="status">
<p class="author">Author: TREX-CoE</p>
<p class="date">Created: 2021-05-05 Wed 16:18</p>
<p class="date">Created: 2021-05-06 Thu 07:26</p>
<p class="validation"><a href="http://validator.w3.org/check?uri=referer">Validate</a></p>
</div>
</body>