Working on automake

COPYING

@@ -0,0 +1 @@
+LICENSE

Makefile.am

@@ -1,24 +1,24 @@
 # QMCkl - Quantum Monte Carlo kernel library
 #
 # BSD 3-Clause License
-# 
+#
 # Copyright (c) 2020, TREX Center of Excellence
 # All rights reserved.
-# 
+#
 # Redistribution and use in source and binary forms, with or without
 # modification, are permitted provided that the following conditions are met:
-# 
+#
 # 1. Redistributions of source code must retain the above copyright notice, this
 #    list of conditions and the following disclaimer.
-# 
+#
 # 2. Redistributions in binary form must reproduce the above copyright notice,
 #    this list of conditions and the following disclaimer in the documentation
 #    and/or other materials provided with the distribution.
-# 
+#
 # 3. Neither the name of the copyright holder nor the names of its
 #    contributors may be used to endorse or promote products derived from
 #    this software without specific prior written permission.
-# 
+#
 # THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
 # AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
 # IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
@@ -37,10 +37,66 @@ VERSION_MAJOR   = @VERSION_MAJOR@
 VERSION_MINOR   = @VERSION_MINOR@
 VERSION_PATCH   = @VERSION_PATCH@
 
-SUBDIRS = src
+SUBDIRS =
+CLEANFILES = 
 
 pkgconfigdir = $(libdir)/pkgconfig
-pkgconfig_DATA = qmckl.pc
+pkgconfig_DATA = $(srcdir)/qmckl.pc
+
+qmckl_h = $(srcdir)/include/qmckl.h
+include_HEADERS = $(qmckl_h)
+
+qmckl_f = $(srcdir)/share/qmckl/fortran/qmckl_f.f90
+fortrandir = $(datadir)/$(PACKAGE_NAME)/fortran/
+fortran_DATA = $(qmckl_f)
+
+export srcdir qmckl_f qmckl_h
+
+sources_tangled = src/qmckl_ao.c
+
+
+if QMCKL_DEVEL
+# <-----
+dist_src_DATA = $(ORG_FILES)
+
+BUILT_SOURCES = $(C_FILES) $(F_FILES) $(FH_FUNC_FILES) $(FH_TYPE_FILES) $(H_FUNC_FILES) $(H_TYPE_FILES) $(H_PRIVATE_FUNC_FILES) $(H_PRIVATE_TYPE_FILES)
+CLEANFILES += $(BUILT_SOURCES) $(C_TEST_FILES) $(F_TEST_FILES)
+
+# ----->
+endif
+
+## Silent
+
+tangle_verbose   = $(tangle_verbose_@AM_V@)
+tangle_verbose_  = $(tangle_verbose_@AM_DEFAULT_V@)
+tangle_verbose_0 = @echo "  TANGLE   $@";
+
+cat_h_verbose   = $(cat_h_verbose_@AM_V@)
+cat_h_verbose_  = $(cat_h_verbose_@AM_DEFAULT_V@)
+cat_h_verbose_0 = @echo "  HEADER   $@";
+
+## Rules
+include $(srcdir)/generated.mk
+
+SUFFIXES = .f90 .h .org .c _f.f90 _func.h _type.h _private_func.h _private_type.h
+
+$(srcdir)/generated.mk: $(ORG_FILES)
+	$(srcdir)/tools/build_makefile.sh
+
+$(qmckl_h): $(H_FUNC_FILES) $(H_TYPE_FILES)
+	$(cat_h_verbose)$(srcdir)/tools/build_qmckl_h.sh
+
+$(qmckl_f): $(FH_FUNC_FILES) $(FH_TYPE_FILES)
+	$(cat_h_verbose)$(srcdir)/tools/build_qmckl_f.sh
+
+$(srcdir)/src/qmckl_f.f90: $(qmckl_f)
+	cp $(qmckl_f) $(srcdir)/src/qmckl_f.f90
+
+#lib_LTLIBRARIES = $(top_srcdir)/src/libqmckl.la
+#
+#$(top_srcdir)/src/libqmckl.la;
+#	$(MAKE) -C src libqmckl.la
+#
 
 rpms srcrpm:
 	for dir in $(SUBDIRS); do \
@@ -49,6 +105,4 @@ rpms srcrpm:
 
 .PHONY: rpms srcrpm
 
-README: README.md
-COPYING: LICENSE
 

Makefile.in

@@ -17,24 +17,24 @@
 # QMCkl - Quantum Monte Carlo kernel library
 #
 # BSD 3-Clause License
-# 
+#
 # Copyright (c) 2020, TREX Center of Excellence
 # All rights reserved.
-# 
+#
 # Redistribution and use in source and binary forms, with or without
 # modification, are permitted provided that the following conditions are met:
-# 
+#
 # 1. Redistributions of source code must retain the above copyright notice, this
 #    list of conditions and the following disclaimer.
-# 
+#
 # 2. Redistributions in binary form must reproduce the above copyright notice,
 #    this list of conditions and the following disclaimer in the documentation
 #    and/or other materials provided with the distribution.
-# 
+#
 # 3. Neither the name of the copyright holder nor the names of its
 #    contributors may be used to endorse or promote products derived from
 #    this software without specific prior written permission.
-# 
+#
 # THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
 # AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
 # IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
@@ -46,6 +46,7 @@
 # OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
 # OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 
+
 VPATH = @srcdir@
 am__is_gnu_make = { \
   if test -z '$(MAKELEVEL)'; then \
@@ -120,6 +121,7 @@ PRE_UNINSTALL = :
 POST_UNINSTALL = :
 build_triplet = @build@
 host_triplet = @host@
+@QMCKL_DEVEL_TRUE@am__append_1 = $(BUILT_SOURCES) $(C_TEST_FILES) $(F_TEST_FILES)
 subdir = .
 ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/libtool.m4 \
@@ -129,7 +131,8 @@ am__aclocal_m4_deps = $(top_srcdir)/m4/libtool.m4 \
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 DIST_COMMON = $(srcdir)/Makefile.am $(top_srcdir)/configure \
-	$(am__configure_deps) $(am__DIST_COMMON)
+	$(am__configure_deps) $(am__dist_src_DATA_DIST) \
+	$(include_HEADERS) $(am__DIST_COMMON)
 am__CONFIG_DISTCLEAN_FILES = config.status config.cache config.log \
  configure.lineno config.status.lineno
 mkinstalldirs = $(install_sh) -d
@@ -163,6 +166,13 @@ am__can_run_installinfo = \
     n|no|NO) false;; \
     *) (install-info --version) >/dev/null 2>&1;; \
   esac
+am__dist_src_DATA_DIST = $(srcdir)/org/qmckl_ao.org \
+	$(srcdir)/org/qmckl_context.org \
+	$(srcdir)/org/qmckl_distance.org \
+	$(srcdir)/org/qmckl_electron.org $(srcdir)/org/qmckl_error.org \
+	$(srcdir)/org/qmckl_memory.org $(srcdir)/org/qmckl_numprec.org \
+	$(srcdir)/org/qmckl.org $(srcdir)/org/README.org \
+	$(srcdir)/org/test_qmckl.org
 am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
 am__vpath_adj = case $$p in \
     $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
@@ -190,8 +200,10 @@ am__uninstall_files_from_dir = { \
     || { echo " ( cd '$$dir' && rm -f" $$files ")"; \
          $(am__cd) "$$dir" && rm -f $$files; }; \
   }
-am__installdirs = "$(DESTDIR)$(pkgconfigdir)"
+am__installdirs = "$(DESTDIR)$(srcdir)" "$(DESTDIR)$(fortrandir)" \
-DATA = $(pkgconfig_DATA)
+	"$(DESTDIR)$(pkgconfigdir)" "$(DESTDIR)$(includedir)"
+DATA = $(dist_src_DATA) $(fortran_DATA) $(pkgconfig_DATA)
+HEADERS = $(include_HEADERS)
 RECURSIVE_CLEAN_TARGETS = mostlyclean-recursive clean-recursive	\
   distclean-recursive maintainer-clean-recursive
 am__recursive_targets = \
@@ -221,10 +233,10 @@ ETAGS = etags
 CTAGS = ctags
 CSCOPE = cscope
 DIST_SUBDIRS = $(SUBDIRS)
-am__DIST_COMMON = $(srcdir)/Makefile.in $(srcdir)/qmckl.pc.in \
+am__DIST_COMMON = $(srcdir)/Makefile.in $(srcdir)/generated.mk \
-	$(top_srcdir)/include/config.h.in AUTHORS COPYING ChangeLog \
+	$(srcdir)/qmckl.pc.in $(top_srcdir)/include/config.h.in \
-	INSTALL NEWS README compile config.guess config.sub depcomp \
+	AUTHORS COPYING ChangeLog INSTALL NEWS README compile \
-	install-sh ltmain.sh missing
+	config.guess config.sub depcomp install-sh ltmain.sh missing
 DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
 distdir = $(PACKAGE)-$(VERSION)
 top_distdir = $(distdir)
@@ -281,7 +293,6 @@ CFLAGS = @CFLAGS@
 CPP = @CPP@
 CPPFLAGS = @CPPFLAGS@
 CYGPATH_W = @CYGPATH_W@
-C_FILES = @C_FILES@
 DEFS = @DEFS@
 DEPDIR = @DEPDIR@
 DLLTOOL = @DLLTOOL@
@@ -298,15 +309,8 @@ FCFLAGS = @FCFLAGS@
 FCFLAGS_f90 = @FCFLAGS_f90@
 FCLIBS = @FCLIBS@
 FGREP = @FGREP@
-FH_FUNC_FILES = @FH_FUNC_FILES@
-FH_TYPE_FILES = @FH_TYPE_FILES@
-F_FILES = @F_FILES@
 GREP = @GREP@
 HAS_CPPCHECK = @HAS_CPPCHECK@
-H_FUNC_FILES = @H_FUNC_FILES@
-H_PRIVATE_FUNC_FILES = @H_PRIVATE_FUNC_FILES@
-H_PRIVATE_TYPE_FILES = @H_PRIVATE_TYPE_FILES@
-H_TYPE_FILES = @H_TYPE_FILES@
 INSTALL = @INSTALL@
 INSTALL_DATA = @INSTALL_DATA@
 INSTALL_PROGRAM = @INSTALL_PROGRAM@
@@ -329,7 +333,6 @@ NM = @NM@
 NMEDIT = @NMEDIT@
 OBJDUMP = @OBJDUMP@
 OBJEXT = @OBJEXT@
-ORG_FILES = @ORG_FILES@
 OTOOL = @OTOOL@
 OTOOL64 = @OTOOL64@
 PACKAGE = @PACKAGE@
@@ -409,15 +412,50 @@ top_build_prefix = @top_build_prefix@
 top_builddir = @top_builddir@
 top_srcdir = @top_srcdir@
 ACLOCAL_AMFLAGS = -I m4
-SUBDIRS = src
+SUBDIRS = 
+CLEANFILES = $(am__append_1)
 pkgconfigdir = $(libdir)/pkgconfig
-pkgconfig_DATA = qmckl.pc
+pkgconfig_DATA = $(srcdir)/qmckl.pc
-all: all-recursive
+qmckl_h = $(srcdir)/include/qmckl.h
+include_HEADERS = $(qmckl_h)
+qmckl_f = $(srcdir)/share/qmckl/fortran/qmckl_f.f90
+fortrandir = $(datadir)/$(PACKAGE_NAME)/fortran/
+fortran_DATA = $(qmckl_f)
+sources_tangled = src/qmckl_ao.c
+
+# <-----
+@QMCKL_DEVEL_TRUE@dist_src_DATA = $(ORG_FILES)
+@QMCKL_DEVEL_TRUE@BUILT_SOURCES = $(C_FILES) $(F_FILES) $(FH_FUNC_FILES) $(FH_TYPE_FILES) $(H_FUNC_FILES) $(H_TYPE_FILES) $(H_PRIVATE_FUNC_FILES) $(H_PRIVATE_TYPE_FILES)
+
+# ----->
+tangle_verbose = $(tangle_verbose_@AM_V@)
+tangle_verbose_ = $(tangle_verbose_@AM_DEFAULT_V@)
+tangle_verbose_0 = @echo "  TANGLE   $@";
+cat_h_verbose = $(cat_h_verbose_@AM_V@)
+cat_h_verbose_ = $(cat_h_verbose_@AM_DEFAULT_V@)
+cat_h_verbose_0 = @echo "  HEADER   $@";
+ORG_FILES = $(srcdir)/org/qmckl_ao.org $(srcdir)/org/qmckl_context.org $(srcdir)/org/qmckl_distance.org $(srcdir)/org/qmckl_electron.org $(srcdir)/org/qmckl_error.org $(srcdir)/org/qmckl_memory.org $(srcdir)/org/qmckl_numprec.org $(srcdir)/org/qmckl.org $(srcdir)/org/README.org $(srcdir)/org/test_qmckl.org 
+C_FILES = $(srcdir)/src/qmckl_ao.c $(srcdir)/src/qmckl_context.c $(srcdir)/src/qmckl_electron.c $(srcdir)/src/qmckl_error.c $(srcdir)/src/qmckl_memory.c $(srcdir)/src/qmckl_numprec.c
+F_FILES = $(srcdir)/src/qmckl_ao_f.f90 $(srcdir)/src/qmckl_distance_f.f90 $(srcdir)/src/qmckl_electron_f.f90
+C_O_FILES = $(srcdir)/src/qmckl_ao.o $(srcdir)/src/qmckl_context.o $(srcdir)/src/qmckl_electron.o $(srcdir)/src/qmckl_error.o $(srcdir)/src/qmckl_memory.o $(srcdir)/src/qmckl_numprec.o
+F_O_FILES = 
+FH_FUNC_FILES = $(srcdir)/src/qmckl_ao_fh_func.f90 $(srcdir)/src/qmckl_context_fh_func.f90 $(srcdir)/src/qmckl_distance_fh_func.f90 $(srcdir)/src/qmckl_error_fh_func.f90 $(srcdir)/src/qmckl_numprec_fh_func.f90
+FH_TYPE_FILES = $(srcdir)/src/qmckl_context_fh_type.f90 $(srcdir)/src/qmckl_error_fh_type.f90
+H_FUNC_FILES = $(srcdir)/src/qmckl_ao_func.h $(srcdir)/src/qmckl_context_func.h $(srcdir)/src/qmckl_distance_func.h $(srcdir)/src/qmckl_electron_func.h $(srcdir)/src/qmckl_error_func.h $(srcdir)/src/qmckl_memory_func.h $(srcdir)/src/qmckl_numprec_func.h
+H_TYPE_FILES = $(srcdir)/src/qmckl_context_type.h $(srcdir)/src/qmckl_error_type.h $(srcdir)/src/qmckl_numprec_type.h
+H_PRIVATE_FUNC_FILES = $(srcdir)/src/qmckl_ao_private_func.h $(srcdir)/src/qmckl_electron_private_func.h $(srcdir)/src/qmckl_memory_private_func.h
+H_PRIVATE_TYPE_FILES = $(srcdir)/src/qmckl_ao_private_type.h $(srcdir)/src/qmckl_context_private_type.h $(srcdir)/src/qmckl_electron_private_type.h $(srcdir)/src/qmckl_error_private_type.h $(srcdir)/src/qmckl_memory_private_type.h $(srcdir)/src/qmckl_numprec_private_type.h
+C_TEST_FILES = $(srcdir)/src/test_qmckl_ao.c $(srcdir)/src/test_qmckl_context.c $(srcdir)/src/test_qmckl_distance.c $(srcdir)/src/test_qmckl_electron.c $(srcdir)/src/test_qmckl_error.c $(srcdir)/src/test_qmckl_memory.c $(srcdir)/src/test_qmckl_numprec.c
+F_TEST_FILES = $(srcdir)/src/test_qmckl_ao_f.f90 $(srcdir)/src/test_qmckl_distance_f.f90
+SUFFIXES = .f90 .h .org .c _f.f90 _func.h _type.h _private_func.h _private_type.h
+all: $(BUILT_SOURCES)
+	$(MAKE) $(AM_MAKEFLAGS) all-recursive
 
 .SUFFIXES:
+.SUFFIXES: .f90 .h .org .c _f.f90 _func.h _type.h _private_func.h _private_type.h
 am--refresh: Makefile
 	@:
-$(srcdir)/Makefile.in: @MAINTAINER_MODE_TRUE@ $(srcdir)/Makefile.am  $(am__configure_deps)
+$(srcdir)/Makefile.in: @MAINTAINER_MODE_TRUE@ $(srcdir)/Makefile.am $(srcdir)/generated.mk $(am__configure_deps)
 	@for dep in $?; do \
 	  case '$(am__configure_deps)' in \
 	    *$$dep*) \
@@ -439,6 +477,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
 	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $@ $(am__maybe_remake_depfiles)'; \
 	    cd $(top_builddir) && $(SHELL) ./config.status $@ $(am__maybe_remake_depfiles);; \
 	esac;
+$(srcdir)/generated.mk $(am__empty):
 
 $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
 	$(SHELL) ./config.status --recheck
@@ -474,6 +513,48 @@ clean-libtool:
 
 distclean-libtool:
 	-rm -f libtool config.lt
+install-dist_srcDATA: $(dist_src_DATA)
+	@$(NORMAL_INSTALL)
+	@list='$(dist_src_DATA)'; test -n "$(srcdir)" || list=; \
+	if test -n "$$list"; then \
+	  echo " $(MKDIR_P) '$(DESTDIR)$(srcdir)'"; \
+	  $(MKDIR_P) "$(DESTDIR)$(srcdir)" || exit 1; \
+	fi; \
+	for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  echo "$$d$$p"; \
+	done | $(am__base_list) | \
+	while read files; do \
+	  echo " $(INSTALL_DATA) $$files '$(DESTDIR)$(srcdir)'"; \
+	  $(INSTALL_DATA) $$files "$(DESTDIR)$(srcdir)" || exit $$?; \
+	done
+
+uninstall-dist_srcDATA:
+	@$(NORMAL_UNINSTALL)
+	@list='$(dist_src_DATA)'; test -n "$(srcdir)" || list=; \
+	files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
+	dir='$(DESTDIR)$(srcdir)'; $(am__uninstall_files_from_dir)
+install-fortranDATA: $(fortran_DATA)
+	@$(NORMAL_INSTALL)
+	@list='$(fortran_DATA)'; test -n "$(fortrandir)" || list=; \
+	if test -n "$$list"; then \
+	  echo " $(MKDIR_P) '$(DESTDIR)$(fortrandir)'"; \
+	  $(MKDIR_P) "$(DESTDIR)$(fortrandir)" || exit 1; \
+	fi; \
+	for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  echo "$$d$$p"; \
+	done | $(am__base_list) | \
+	while read files; do \
+	  echo " $(INSTALL_DATA) $$files '$(DESTDIR)$(fortrandir)'"; \
+	  $(INSTALL_DATA) $$files "$(DESTDIR)$(fortrandir)" || exit $$?; \
+	done
+
+uninstall-fortranDATA:
+	@$(NORMAL_UNINSTALL)
+	@list='$(fortran_DATA)'; test -n "$(fortrandir)" || list=; \
+	files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
+	dir='$(DESTDIR)$(fortrandir)'; $(am__uninstall_files_from_dir)
 install-pkgconfigDATA: $(pkgconfig_DATA)
 	@$(NORMAL_INSTALL)
 	@list='$(pkgconfig_DATA)'; test -n "$(pkgconfigdir)" || list=; \
@@ -495,6 +576,27 @@ uninstall-pkgconfigDATA:
 	@list='$(pkgconfig_DATA)'; test -n "$(pkgconfigdir)" || list=; \
 	files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
 	dir='$(DESTDIR)$(pkgconfigdir)'; $(am__uninstall_files_from_dir)
+install-includeHEADERS: $(include_HEADERS)
+	@$(NORMAL_INSTALL)
+	@list='$(include_HEADERS)'; test -n "$(includedir)" || list=; \
+	if test -n "$$list"; then \
+	  echo " $(MKDIR_P) '$(DESTDIR)$(includedir)'"; \
+	  $(MKDIR_P) "$(DESTDIR)$(includedir)" || exit 1; \
+	fi; \
+	for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  echo "$$d$$p"; \
+	done | $(am__base_list) | \
+	while read files; do \
+	  echo " $(INSTALL_HEADER) $$files '$(DESTDIR)$(includedir)'"; \
+	  $(INSTALL_HEADER) $$files "$(DESTDIR)$(includedir)" || exit $$?; \
+	done
+
+uninstall-includeHEADERS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(include_HEADERS)'; test -n "$(includedir)" || list=; \
+	files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
+	dir='$(DESTDIR)$(includedir)'; $(am__uninstall_files_from_dir)
 
 # This directory's subdirectories are mostly independent; you can cd
 # into them and run 'make' without going through this Makefile.
@@ -794,14 +896,16 @@ distcleancheck: distclean
 	       $(distcleancheck_listfiles) ; \
 	       exit 1; } >&2
 check-am: all-am
-check: check-recursive
+check: $(BUILT_SOURCES)
-all-am: Makefile $(DATA)
+	$(MAKE) $(AM_MAKEFLAGS) check-recursive
+all-am: Makefile $(DATA) $(HEADERS)
 installdirs: installdirs-recursive
 installdirs-am:
-	for dir in "$(DESTDIR)$(pkgconfigdir)"; do \
+	for dir in "$(DESTDIR)$(srcdir)" "$(DESTDIR)$(fortrandir)" "$(DESTDIR)$(pkgconfigdir)" "$(DESTDIR)$(includedir)"; do \
 	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
 	done
-install: install-recursive
+install: $(BUILT_SOURCES)
+	$(MAKE) $(AM_MAKEFLAGS) install-recursive
 install-exec: install-exec-recursive
 install-data: install-data-recursive
 uninstall: uninstall-recursive
@@ -823,6 +927,7 @@ install-strip:
 mostlyclean-generic:
 
 clean-generic:
+	-test -z "$(CLEANFILES)" || rm -f $(CLEANFILES)
 
 distclean-generic:
 	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
@@ -831,6 +936,7 @@ distclean-generic:
 maintainer-clean-generic:
 	@echo "This command is intended for maintainers to use"
 	@echo "it deletes files that may require special tools to rebuild."
+	-test -z "$(BUILT_SOURCES)" || rm -f $(BUILT_SOURCES)
 clean: clean-recursive
 
 clean-am: clean-generic clean-libtool mostlyclean-am
@@ -853,7 +959,8 @@ info: info-recursive
 
 info-am:
 
-install-data-am: install-pkgconfigDATA
+install-data-am: install-dist_srcDATA install-fortranDATA \
+	install-includeHEADERS install-pkgconfigDATA
 
 install-dvi: install-dvi-recursive
 
@@ -899,9 +1006,11 @@ ps: ps-recursive
 
 ps-am:
 
-uninstall-am: uninstall-pkgconfigDATA
+uninstall-am: uninstall-dist_srcDATA uninstall-fortranDATA \
+	uninstall-includeHEADERS uninstall-pkgconfigDATA
 
-.MAKE: $(am__recursive_targets) install-am install-strip
+.MAKE: $(am__recursive_targets) all check install install-am \
+	install-strip
 
 .PHONY: $(am__recursive_targets) CTAGS GTAGS TAGS all all-am \
 	am--refresh check check-am clean clean-cscope clean-generic \
@@ -911,18 +1020,85 @@ uninstall-am: uninstall-pkgconfigDATA
 	distclean-hdr distclean-libtool distclean-tags distcleancheck \
 	distdir distuninstallcheck dvi dvi-am html html-am info \
 	info-am install install-am install-data install-data-am \
-	install-dvi install-dvi-am install-exec install-exec-am \
+	install-dist_srcDATA install-dvi install-dvi-am install-exec \
-	install-html install-html-am install-info install-info-am \
+	install-exec-am install-fortranDATA install-html \
-	install-man install-pdf install-pdf-am install-pkgconfigDATA \
+	install-html-am install-includeHEADERS install-info \
-	install-ps install-ps-am install-strip installcheck \
+	install-info-am install-man install-pdf install-pdf-am \
-	installcheck-am installdirs installdirs-am maintainer-clean \
+	install-pkgconfigDATA install-ps install-ps-am install-strip \
-	maintainer-clean-generic mostlyclean mostlyclean-generic \
+	installcheck installcheck-am installdirs installdirs-am \
-	mostlyclean-libtool pdf pdf-am ps ps-am tags tags-am uninstall \
+	maintainer-clean maintainer-clean-generic mostlyclean \
-	uninstall-am uninstall-pkgconfigDATA
+	mostlyclean-generic mostlyclean-libtool pdf pdf-am ps ps-am \
+	tags tags-am uninstall uninstall-am uninstall-dist_srcDATA \
+	uninstall-fortranDATA uninstall-includeHEADERS \
+	uninstall-pkgconfigDATA
 
 .PRECIOUS: Makefile
 
 
+export srcdir qmckl_f qmckl_h
+
+$(srcdir)/src/qmckl_context.c $(srcdir)/src/qmckl_context_func.h $(srcdir)/src/qmckl_context_type.h $(srcdir)/src/qmckl_context_private_type.h $(srcdir)/src/qmckl_context_fh_func.f90 $(srcdir)/src/qmckl_context_fh_type.f90 $(srcdir)/src/test_qmckl_context.c : org/qmckl_context.org
+	$(tangle_verbose)$(srcdir)/tools/tangle.sh org/qmckl_context.org
+
+$(srcdir)/src/qmckl_ao.c $(srcdir)/src/qmckl_ao_func.h $(srcdir)/src/qmckl_ao_private_type.h $(srcdir)/src/qmckl_ao_private_func.h $(srcdir)/src/qmckl_ao_f.f90 $(srcdir)/src/qmckl_ao_fh_func.f90 $(srcdir)/src/test_qmckl_ao.c $(srcdir)/src/test_qmckl_ao_f.f90 : org/qmckl_ao.org
+	$(tangle_verbose)$(srcdir)/tools/tangle.sh org/qmckl_ao.org
+
+$(srcdir)/src/qmckl_numprec.c $(srcdir)/src/qmckl_numprec_func.h $(srcdir)/src/qmckl_numprec_type.h $(srcdir)/src/qmckl_numprec_private_type.h $(srcdir)/src/qmckl_numprec_fh_func.f90 $(srcdir)/src/test_qmckl_numprec.c : org/qmckl_numprec.org
+	$(tangle_verbose)$(srcdir)/tools/tangle.sh org/qmckl_numprec.org
+
+$(srcdir)/src/qmckl_electron.c $(srcdir)/src/qmckl_electron_func.h $(srcdir)/src/qmckl_electron_private_type.h $(srcdir)/src/qmckl_electron_private_func.h $(srcdir)/src/qmckl_electron_f.f90 $(srcdir)/src/test_qmckl_electron.c : org/qmckl_electron.org
+	$(tangle_verbose)$(srcdir)/tools/tangle.sh org/qmckl_electron.org
+
+$(srcdir)/src/qmckl_error.c $(srcdir)/src/qmckl_error_func.h $(srcdir)/src/qmckl_error_type.h $(srcdir)/src/qmckl_error_private_type.h $(srcdir)/src/qmckl_error_fh_func.f90 $(srcdir)/src/qmckl_error_fh_type.f90 $(srcdir)/src/test_qmckl_error.c : org/qmckl_error.org
+	$(tangle_verbose)$(srcdir)/tools/tangle.sh org/qmckl_error.org
+
+$(srcdir)/src/qmckl_distance_func.h $(srcdir)/src/qmckl_distance_f.f90 $(srcdir)/src/qmckl_distance_fh_func.f90 $(srcdir)/src/test_qmckl_distance.c $(srcdir)/src/test_qmckl_distance_f.f90 : org/qmckl_distance.org
+	$(tangle_verbose)$(srcdir)/tools/tangle.sh org/qmckl_distance.org
+
+$(srcdir)/src/qmckl_memory.c $(srcdir)/src/qmckl_memory_func.h $(srcdir)/src/qmckl_memory_private_type.h $(srcdir)/src/qmckl_memory_private_func.h $(srcdir)/src/test_qmckl_memory.c : org/qmckl_memory.org
+	$(tangle_verbose)$(srcdir)/tools/tangle.sh org/qmckl_memory.org
+
+$(srcdir)/src/qmckl_ao_f.o: $(srcdir)/src/qmckl_ao_f.f90 $(srcdir)/src/qmckl_ao_fh_func.f90 qmckl_f.o
+$(srcdir)/src/qmckl_ao.o: $(srcdir)/src/qmckl_ao.c $(srcdir)/src/qmckl_ao_func.h $(srcdir)/src/qmckl_ao_private_type.h $(srcdir)/src/qmckl_ao_private_func.h $(qmckl_h)
+$(srcdir)/src/qmckl_context_f.o: $(srcdir)/src/qmckl_context_fh_func.f90 $(srcdir)/src/qmckl_context_fh_type.f90 qmckl_f.o
+$(srcdir)/src/qmckl_context.o: $(srcdir)/src/qmckl_context.c $(srcdir)/src/qmckl_context_func.h $(srcdir)/src/qmckl_context_type.h $(srcdir)/src/qmckl_context_private_type.h $(qmckl_h)
+$(srcdir)/src/qmckl_distance_f.o: $(srcdir)/src/qmckl_distance_f.f90 $(srcdir)/src/qmckl_distance_fh_func.f90 qmckl_f.o
+$(srcdir)/src/qmckl_distance.o: $(srcdir)/src/qmckl_distance_func.h $(qmckl_h)
+$(srcdir)/src/qmckl_electron_f.o: $(srcdir)/src/qmckl_electron_f.f90 qmckl_f.o
+$(srcdir)/src/qmckl_electron.o: $(srcdir)/src/qmckl_electron.c $(srcdir)/src/qmckl_electron_func.h $(srcdir)/src/qmckl_electron_private_type.h $(srcdir)/src/qmckl_electron_private_func.h $(qmckl_h)
+$(srcdir)/src/qmckl_error_f.o: $(srcdir)/src/qmckl_error_fh_func.f90 $(srcdir)/src/qmckl_error_fh_type.f90 qmckl_f.o
+$(srcdir)/src/qmckl_error.o: $(srcdir)/src/qmckl_error.c $(srcdir)/src/qmckl_error_func.h $(srcdir)/src/qmckl_error_type.h $(srcdir)/src/qmckl_error_private_type.h $(qmckl_h)
+$(srcdir)/src/qmckl_memory.o: $(srcdir)/src/qmckl_memory.c $(srcdir)/src/qmckl_memory_func.h $(srcdir)/src/qmckl_memory_private_type.h $(srcdir)/src/qmckl_memory_private_func.h $(qmckl_h)
+$(srcdir)/src/qmckl_numprec_f.o: $(srcdir)/src/qmckl_numprec_fh_func.f90 qmckl_f.o
+$(srcdir)/src/qmckl_numprec.o: $(srcdir)/src/qmckl_numprec.c $(srcdir)/src/qmckl_numprec_func.h $(srcdir)/src/qmckl_numprec_type.h $(srcdir)/src/qmckl_numprec_private_type.h $(qmckl_h)
+$(srcdir)/src/test_qmckl_ao_f.o: $(srcdir)/src/test_qmckl_ao_f.f90 $(srcdir)/src/qmckl_ao_f.o qmckl_f.o
+$(srcdir)/src/test_qmckl_ao.o: $(srcdir)/src/test_qmckl_ao.c $(srcdir)/src/qmckl_ao.o $(qmckl_h)
+$(srcdir)/src/test_qmckl_context.o: $(srcdir)/src/test_qmckl_context.c $(srcdir)/src/qmckl_context.o $(qmckl_h)
+$(srcdir)/src/test_qmckl_distance_f.o: $(srcdir)/src/test_qmckl_distance_f.f90 $(srcdir)/src/qmckl_distance_f.o qmckl_f.o
+$(srcdir)/src/test_qmckl_distance.o: $(srcdir)/src/test_qmckl_distance.c $(srcdir)/src/qmckl_distance.o $(qmckl_h)
+$(srcdir)/src/test_qmckl_electron.o: $(srcdir)/src/test_qmckl_electron.c $(srcdir)/src/qmckl_electron.o $(qmckl_h)
+$(srcdir)/src/test_qmckl_error.o: $(srcdir)/src/test_qmckl_error.c $(srcdir)/src/qmckl_error.o $(qmckl_h)
+$(srcdir)/src/test_qmckl_memory.o: $(srcdir)/src/test_qmckl_memory.c $(srcdir)/src/qmckl_memory.o $(qmckl_h)
+$(srcdir)/src/test_qmckl_numprec.o: $(srcdir)/src/test_qmckl_numprec.c $(srcdir)/src/qmckl_numprec.o $(qmckl_h)
+
+$(srcdir)/generated.mk: $(ORG_FILES)
+	$(srcdir)/tools/build_makefile.sh
+
+$(qmckl_h): $(H_FUNC_FILES) $(H_TYPE_FILES)
+	$(cat_h_verbose)$(srcdir)/tools/build_qmckl_h.sh
+
+$(qmckl_f): $(FH_FUNC_FILES) $(FH_TYPE_FILES)
+	$(cat_h_verbose)$(srcdir)/tools/build_qmckl_f.sh
+
+$(srcdir)/src/qmckl_f.f90: $(qmckl_f)
+	cp $(qmckl_f) $(srcdir)/src/qmckl_f.f90
+
+#lib_LTLIBRARIES = $(top_srcdir)/src/libqmckl.la
+#
+#$(top_srcdir)/src/libqmckl.la;
+#	$(MAKE) -C src libqmckl.la
+#
+
 rpms srcrpm:
 	for dir in $(SUBDIRS); do \
 	  (cd $$dir && $(MAKE) $(AM_MAKEFLAGS) $@) || exit 1; \
@@ -930,9 +1106,6 @@ rpms srcrpm:
 
 .PHONY: rpms srcrpm
 
-README: README.md
-COPYING: LICENSE
-
 # Tell versions [3.59,3.63) of GNU make to not export all variables.
 # Otherwise a system limit (for SysV at least) may be exceeded.
 .NOEXPORT:

README

@@ -0,0 +1 @@
+README.md

README.md

@@ -31,7 +31,7 @@ in org-mode files and produce the source code and the documentation from these f
 
 ```
 autoreconf 
-./configure --enable-maintainer-mode --enable-debug
+QMCKL_DEVEL=1 ./configure --enable-debug
 make
 make check
 ```

configure.ac

@@ -41,7 +41,7 @@ AC_INIT([QMCkl],[0.1.1],
 AM_INIT_AUTOMAKE([color-tests parallel-tests silent-rules 1.11])
 AM_MAINTAINER_MODE()
 LT_INIT
-AC_CONFIG_SRCDIR([src/README.org])
+AC_CONFIG_SRCDIR([Makefile.in])
 AC_CONFIG_HEADERS([include/config.h])
 AC_CONFIG_MACRO_DIR([m4])
 #AM_MAINTAINER_MODE
@@ -148,29 +148,12 @@ if test "$ok" = "yes"; then
         ARGS="${ARGS} efence"
 fi
 
-AC_ARG_WITH(munit, [AC_HELP_STRING([--without-munit],[use munit for testing])], ok=yes, ok=no)
-if test "$ok" = "no"; then
-AC_CHECK_FILE([munit/munit.h], [],
-  AC_MSG_ERROR([
-  -------------------------------------------------
-  Error: Git submodule for munit is not downloaded.
-  $ git submodule update --init
-  -------------------------------------------------
-]) )
-else
-  ARGS="${ARGS} munit"
-  AC_DEFINE(HAVE_MUNIT,1,[Define when using munit])
-fi
-
 
 # Checks for header files.
 
 ## qmckl
 AC_CHECK_HEADERS([inttypes.h malloc.h stdint.h stdlib.h string.h strings.h unistd.h])
 
-## munit
-AC_CHECK_HEADERS([fcntl.h langinfo.h limits.h locale.h mach/mach.h sys/time.h])
-
 # Checks for typedefs, structures, and compiler characteristics.
 
 ## qmckl
@@ -181,10 +164,6 @@ AC_TYPE_SIZE_T
 AC_TYPE_UINT32_T
 AC_TYPE_UINT64_T
 
-## munit
-AC_TYPE_PID_T
-AC_C_INLINE
-AC_TYPE_SSIZE_T
 
 # Checks for library functions.
 
@@ -192,16 +171,13 @@ AC_TYPE_SSIZE_T
 AC_FUNC_MALLOC
 AC_CHECK_FUNCS([memset strerror])
 
-## munit
+# Development mode
-AC_FUNC_REALLOC
+AM_CONDITIONAL([QMCKL_DEVEL],[test "x$QMCKL_DEVEL" != x])
-AC_FUNC_STRERROR_R
-AC_FUNC_FORK
-AC_CHECK_FUNCS([clock_gettime dup2 gettimeofday nl_langinfo setlocale strcasecmp strtoul])
 
-if test "x${MAINT}" = "x${MAINTAINER_MODE_TRUE}"; then
+if test "x${QMCKL_DEVEL}" != "x"; then
 
   AC_PROG_AWK
-  cd src && ../tools/create_makefile.sh && cd ..
+  ${srcdir}/tools/build_makefile.sh
 
   AC_CHECK_PROGS([EMACS],[emacs26 emacs],[no])
   if test x${EMACS} == xno ; then
@@ -216,17 +192,31 @@ if test "x${MAINT}" = "x${MAINTAINER_MODE_TRUE}"; then
   if test x${HAS_CPPCHECK} != xno ; then
         HAS_CPPCHECK=1
   fi
-fi
 
-AC_SUBST([ORG_FILES])
+  ## munit
-AC_SUBST([C_FILES])
+  AC_ARG_WITH(munit, [AC_HELP_STRING([--without-munit],[use munit for testing])], ok=yes, ok=no)
-AC_SUBST([F_FILES])
+  if test "$ok" = "no"; then
-AC_SUBST([FH_FUNC_FILES])
+  AC_CHECK_FILE([munit/munit.h], [],
-AC_SUBST([FH_TYPE_FILES])
+    AC_MSG_ERROR([
-AC_SUBST([H_FUNC_FILES])
+    -------------------------------------------------
-AC_SUBST([H_TYPE_FILES])
+    Error: Git submodule for munit is not downloaded.
-AC_SUBST([H_PRIVATE_FUNC_FILES])
+    $ git submodule update --init
-AC_SUBST([H_PRIVATE_TYPE_FILES])
+    -------------------------------------------------
+  ]) )
+  else
+    ARGS="${ARGS} munit"
+    AC_DEFINE(HAVE_MUNIT,1,[Define when using munit])
+  fi
+  AC_CHECK_HEADERS([fcntl.h langinfo.h limits.h locale.h mach/mach.h sys/time.h])
+  AC_TYPE_PID_T
+  AC_C_INLINE
+  AC_TYPE_SSIZE_T
+  AC_FUNC_REALLOC
+  AC_FUNC_STRERROR_R
+  AC_FUNC_FORK
+  AC_CHECK_FUNCS([clock_gettime dup2 gettimeofday nl_langinfo setlocale strcasecmp strtoul])
+
+fi
 
 #PKG-CONFIG
 #mkl-dynamic-lp64-seq
@@ -238,7 +228,7 @@ AC_SUBST([PKG_CFLAGS])
 
 AC_CONFIG_FILES([Makefile
                 qmckl.pc
-                src/Makefile])
+                ])
 
 
 AC_OUTPUT

configure.ac.dist.in

@@ -1,168 +0,0 @@
-#                                               -*- Autoconf -*-
-# Process this file with autoconf to produce a configure script.
-#
-# configure script for maintainers.
-
-AC_PREREQ([2.69])
-
-AC_INIT([@PACKAGE_NAME@],[@PACKAGE_VERSION@],
-        [@PACKAGE_BUGREPORT@], [],
-        [@PACKAGE_URL@])
-
-AC_CONFIG_SRCDIR([src/qmckl_ao.c])
-AC_CONFIG_HEADERS([include/config.h])
-AC_CONFIG_MACRO_DIR([m4])
-#AM_MAINTAINER_MODE
-
-VERSION_MAJOR=`echo ${PACKAGE_VERSION} | cut -d. -f1`
-VERSION_MINOR=`echo ${PACKAGE_VERSION} | cut -d. -f2`
-VERSION_PATCH=`echo ${PACKAGE_VERSION} | cut -d. -f3 | cut -d- -f1`
-AC_DEFINE_UNQUOTED(QMCKL_VERSION_MAJOR, [$VERSION_MAJOR], [major version])
-AC_DEFINE_UNQUOTED(QMCKL_VERSION_MINOR, [$VERSION_MINOR], [minor version])
-AC_DEFINE_UNQUOTED(QMCKL_VERSION_PATCH, [$VERSION_PATCH], [patch version])
-
-#AM_INIT_AUTOMAKE([foreign color-tests parallel-tests silent-rules 1.11])
-#AM_SILENT_RULES(yes)
-#AC_SUBST(SHARED_VERSION_INFO)
-#AM_ENABLE_SHARED(no) dnl shared libs cause too many headaches to be default
-#AC_PROG_LIBTOOL
-
-AC_LANG(C)
-
-# Checks for programs.
-AC_PROG_CC
-AC_PROG_CC_C_O
-AC_PROG_FC
-AC_PROG_FC_C_O
-AC_FC_SRCEXT([f90])
-AC_FC_FREEFORM
-AC_PROG_INSTALL
-AC_PROG_LN_S
-AC_PROG_CC_C99
-PKG_PROG_PKG_CONFIG()
-PKG_LIBS=""
-PKG_CFLAGS=""
-
-# fPIC option
-AC_MSG_CHECKING(whether fPIC compiler option is accepted in C)
-SAVED_CFLAGS="${CFLAGS}"
-CFLAGS="${CFLAGS} -fPIC -Werror"
-AC_COMPILE_IFELSE([AC_LANG_PROGRAM([], [return 0;])],
-    [AC_MSG_RESULT(yes)
-     CFLAGS="${SAVED_CFLAGS} -fPIC"],
-    [AC_MSG_RESULT(no)
-     CFLAGS="${SAVED_CFLAGS}"])
-
-AC_MSG_CHECKING(whether fPIC compiler option is accepted in Fortran)
-FCFLAGS="${FCFLAGS} -fPIC -Werror"
-SAVED_FCFLAGS="${FCFLAGS}"
-AC_LANG_PUSH(Fortran)
-AC_COMPILE_IFELSE([AC_LANG_PROGRAM([], [])],
-    [AC_MSG_RESULT(yes)
-     FCFLAGS="${SAVED_FCFLAGS} -fPIC"],
-    [AC_MSG_RESULT(no)
-     FCFLAGS="${SAVED_FCFLAGS}"])
-AC_LANG_POP()
-
-# Checks for libraries.
-
-AC_FC_LIBRARY_LDFLAGS
-
-AC_CHECK_LIB([m], [sqrt])
-AC_CHECK_HEADERS([assert.h errno.h malloc.h math.h pthread.h stdbool.h stdint.h stdio.h stdlib.h string.h])
-
-## pthread
-AC_CHECK_LIB([pthread], [pthread_create])
-
-# OpenMP
-AC_ARG_WITH(openmp, [AC_HELP_STRING([--with-openmp],[enable OpenMP])], with_omp=$withval, with_omp=no)
-if test "x$with_omp" = xyes; then
-   AC_DEFINE([USE_OPENMP], [1], [Define to use OpenMP threading.])
-   AX_OPENMP([],
-    [AC_MSG_ERROR([Could not find OpenMP flags; configure with --without-openmp])])
-   CFLAGS="${CFLAGS} ${OPENMP_CFLAGS}"
-fi
-
-
-## BLAS
-AX_BLAS([], [AC_MSG_ERROR([BLAS was not found.])])
-
-## LAPACK
-AX_LAPACK([], [AC_MSG_ERROR([LAPACK was not found.])])
-
-# Checks for header files.
-
-## qmckl
-AC_CHECK_HEADERS([inttypes.h malloc.h stdint.h stdlib.h string.h strings.h unistd.h])
-
-# Checks for typedefs, structures, and compiler characteristics.
-
-## qmckl
-AC_CHECK_HEADER_STDBOOL
-AC_TYPE_INT32_T
-AC_TYPE_INT64_T
-AC_TYPE_SIZE_T
-AC_TYPE_UINT32_T
-AC_TYPE_UINT64_T
-
-# Checks for library functions.
-
-## qmckl
-AC_FUNC_MALLOC
-AC_CHECK_FUNCS([memset strerror])
-
-# Options.
-
-AC_ARG_ENABLE(debug, [AC_HELP_STRING([--enable-debug],[compile for debugging])], ok=$enableval, ok=no)
-if test "$ok" = "yes"; then
-        if test "$GCC" = "yes"; then
-	        CFLAGS="$CFLAGS \
--Wall -W -Wbad-function-cast -Wcast-qual \
--Wpointer-arith -Wcast-align -Wpedantic -Wextra -fmax-errors=3"
-        fi
-        if test "$GFC" = "yes"; then
-	        FCFLAGS="$FCFLAGS \
--fcheck=all -Waliasing -Wampersand -Wconversion \
--Wsurprising -ffpe-trap=zero,overflow,underflow \
--Wintrinsics-std -Wno-tabs -Wintrinsic-shadow -Wline-truncation \
--Wreal-q-constant -Wuninitialized  -fbacktrace -finit-real=nan"
-        fi
-        if test "$FC" = "ifort"; then
-	        FCFLAGS="$FCFLAGS \
--traceback -check all -debug all -fpe-all=0  -implicitnone"
-        fi
-	AC_DEFINE(DEBUG,1,[Define to turn on debugging checks])
-fi
-
-AC_ARG_ENABLE(debug-malloc, [AC_HELP_STRING([--enable-debug-malloc],[use debug malloc/free])], ok=$enableval, ok=no)
-if test "$ok" = "yes"; then
-	AC_DEFINE(DEBUG_MALLOC,1,[Define to use debugging malloc/free])
-fi
-
-AC_ARG_ENABLE(prof, [AC_HELP_STRING([--enable-prof],[compile for profiling])], ok=$enableval, ok=no)
-if test "$ok" = "yes"; then
-	CFLAGS="${CFLAGS} -pg"
-	AC_DEFINE(ENABLE_PROF,1,[Define when using the profiler tool])
-fi
-
-AC_ARG_WITH(efence, [AC_HELP_STRING([--with-efence],[use ElectricFence library])], ok=$withval, ok=no)
-if test "$ok" = "yes"; then
-	AC_CHECK_LIB(efence, malloc)
-fi
-
-
-#PKG-CONFIG
-#mkl-dynamic-lp64-seq
-
-LIBS="${LAPACK_LIBS} ${BLAS_LIBS} ${LIBS}"
-PKG_LIBS="${PKG_LIBS} ${LIBS}"
-AC_SUBST([PKG_LIBS])
-AC_SUBST([PKG_CFLAGS])
-
-AC_CONFIG_FILES([Makefile
-                 qmckl.pc
-                 src/Makefile
-                ])
-
-
-AC_OUTPUT

include/.gitignore

@@ -1 +1,3 @@
-
+config.h.in
+config.h
+qmckl.h

lib/.gitignore

@@ -1,2 +0,0 @@
-libqmckl.so
-libqmckl.a

share/doc/qmckl/html/qmckl.css

@@ -1,972 +0,0 @@
-/* Adapted from worg.css */
-
-@import url(https://fonts.googleapis.com/css?family=Droid+Sans|Droid+Sans+Mono|Droid+Serif);
-
-@media all
-{
-    html {
-	margin: 0;
-	font: .9em/1.6em "Droid Serif", Cambria, Georgia, "DejaVu Serif", serif;
-	background-image: url(/img/org-mode-unicorn-logo-worg.png);
-	background-attachment: fixed;
-	background-position: right bottom;
-	background-repeat: no-repeat;
-	background-color: white;
-    }
-
-    body {
-	font-size: 14pt;
-	line-height: 22pt;
-	color: black;
-	margin-top: 0;
-    }
-
-    body #content {
-	padding-top: 2em;
-	margin: auto;
-	max-width: 70%;
-	background-color: white;
-    }
-
-    body #support {
-	position: fixed;
-	top:0;
-	display:block;
-	font-size: 12pt;
-	right:0pt;
-	text-align: right;
-	padding: .2em 1em;
-	background: #EEE;
-	border-radius: 10px;
-    }
-    
-    body .title {
-	margin-left: 0px;
-	font-size: 22pt;
-    }
-
-    #org-div-home-and-up{
-	position: fixed;
-	right: 0.5em;
-	margin-top: 70px;
-	font-family:sans-serif;
-    }
-
-    /* TOC inspired by http://jashkenas.github.com/coffee-script */
-    #table-of-contents {
-	margin-top: 105px;
-	font-size: 10pt;
-	font-family:sans-serif;
-	position: fixed;
-	right: 0em;
-	top: 0em;
-	background: white;
-	line-height: 12pt;
-	text-align: right;
-	box-shadow: 0 0 1em #777777;
-	-webkit-box-shadow: 0 0 1em #777777;
-	-moz-box-shadow: 0 0 1em #777777;
-	-webkit-border-bottom-left-radius: 5px;
-	-moz-border-radius-bottomleft: 5px;
-	/* ensure doesn't flow off the screen when expanded */
-	max-height: 80%;
-	overflow: auto; }
-    #table-of-contents h2 {
-	font-size: 13pt;
-	max-width: 9em;
-	border: 0;
-	font-weight: normal;
-	padding-left: 0.5em;
-	padding-right: 0.5em;
-	padding-top: 0.05em;
-	padding-bottom: 0.05em; }
-    #table-of-contents #text-table-of-contents {
-	display: none;
-	text-align: left; }
-    #table-of-contents:hover #text-table-of-contents {
-	display: block;
-	padding: 0.5em;
-	margin-top: -1.5em; }
-
-    #license {
-      background-color: #eeeeee;
-    }
-
-    h1 {
-	font-size:2.1em;
-	padding:0 0 30px 0;
-	margin-top: 10px;
-	margin-bottom: 10px;
-	margin-right: 7%;
-	color: grey;
-    }
-
-    h2 {
-	font-family:sans-serif;
-	font-size:1.45em;
-	padding:10px 0 10px 0;
-	color: black;
-	border-bottom: 1px solid #ddd;
-	padding-top: 1.5em;
-    }
-
-    .outline-text-2 {
-	margin-left: 0.1em
-    }
-
-    h3 {
-	font-family:sans-serif;
-	font-size:1.3em;
-	color: grey;
-	margin-left: 0.6em;
-	padding-top: 1.5em;
-    }
-
-    /* #A34D32;*/
-
-
-    .outline-text-3 {
-	margin-left: 0.9em;
-    }
-
-    h4 {
-	font-family:sans-serif;
-	font-size:1.2em;
-	margin-left: 1.2em;
-	color: #A5573E;
-	padding-top: 1.5em;
-    }
-
-    .outline-text-4 {
-	margin-left: 1.45em;
-    }
-
-    a {text-decoration: none; font-weight: 400;}
-    a:visited {text-decoration: none; font-weight: 400;}
-    a:hover {text-decoration: underline;}
-
-    .todo {
-	color: #CA0000;
-    }
-
-    .done {
-	color: #006666;
-    }
-
-    .timestamp-kwd {
-	color: #444;
-    }
-
-    .tag {
-        background-color: #ffff;
-        color: #ffff;
-    }
-
-    li {
-	margin: .4em;
-    }
-
-    table {
-	border: 1;
-	border-color: grey;
-    }
-
-    thead {
-	border: 0;
-    }
-
-    tbody {
-	border: 0;
-    }
-
-    tr {
-	border: 0;
-    }
-
-    td {
-	border-left: 0px;
-	border-right: 0px;
-	border-top: 0px;
-	border-bottom: 0px;
-    }
-
-    th {
-	border-left: 0px;
-	border-right: 0px;
-	border-top: 1px solid grey;
-	border-bottom: 1px solid grey;
-    }
-
-    code {
-	font-size: 100%;
-	color: black;
-	padding: 0px 0.2em;
-    }
-
-    img {
-	border: 0;
-    }
-
-    .share img {
-	opacity: .4;
-	-moz-opacity: .4;
-	filter: alpha(opacity=40);
-    }
-
-    .share img:hover {
-	opacity: 1;
-	-moz-opacity: 1;
-	filter: alpha(opacity=100);
-    }
-
-    pre {
-	font-family: Droid Sans Mono, Monaco, Consolas, "Lucida Console", monospace;
-	color: black;
-	font-size: 90%;
-	padding: 0.5em;
-	overflow: auto;
-	border: none;
-	background-color: #f2f2f2;
-	border-radius: 5px;
-    }
-
-    .org-info-box {
-	clear:both;
-	margin-left:auto;
-	margin-right:auto;
-	padding:0.7em;
-    }
-    .org-info-box img {
-	float:left;
-	margin:0em 0.5em 0em 0em;
-    }
-    .org-info-box p {
-	margin:0em;
-	padding:0em;
-    }
-
-
-    .builtin {
-	/* font-lock-builtin-face */
-	color: #f4a460;
-    }
-    .comment {
-	/* font-lock-comment-face */
-	color: #737373;
-    }
-    .comment-delimiter {
-	/* font-lock-comment-delimiter-face */
-	color: #666666;
-    }
-    .constant {
-	/* font-lock-constant-face */
-	color: #db7093;
-    }
-    .doc {
-	/* font-lock-doc-face */
-	color: #b3b3b3;
-    }
-    .function-name {
-	/* font-lock-function-name-face */
-	color: #5f9ea0;
-    }
-    .headline {
-	/* headline-face */
-	color: #ffffff;
-	background-color: #000000;
-	font-weight: bold;
-    }
-    .keyword {
-	/* font-lock-keyword-face */
-	color: #4682b4;
-    }
-    .negation-char {
-    }
-    .regexp-grouping-backslash {
-    }
-    .regexp-grouping-construct {
-    }
-    .string {
-	/* font-lock-string-face */
-	color: #ccc79a;
-    }
-    .todo-comment {
-	/* todo-comment-face */
-	color: #ffffff;
-	background-color: #000000;
-	font-weight: bold;
-    }
-    .variable-name {
-	/* font-lock-variable-name-face */
-	color: #ff6a6a;
-    }
-    .warning {
-	/* font-lock-warning-face */
-	color: #ffffff;
-	background-color: #cd5c5c;
-	font-weight: bold;
-    }
-    .important {
-	/* font-lock-warning-face */
-	background-color: #e3e3f7;
-    }
-    .exercise {
-	/* font-lock-warning-face */
-	background-color: #e3f7e3;
-    }
-    .note {
-	/* font-lock-warning-face */
-	background-color: #f7f7d9;
-    }
-    pre.a {
-	color: inherit;
-	background-color: inherit;
-	font: inherit;
-	text-decoration: inherit;
-    }
-    pre.a:hover {
-	text-decoration: underline;
-    }
-
-    /* Styles for org-info.js */
-
-    .org-info-js_info-navigation
-    {
-	border-style:none;
-    }
-
-    #org-info-js_console-label
-    {
-	font-size:10px;
-	font-weight:bold;
-	white-space:nowrap;
-    }
-
-    .org-info-js_search-highlight
-    {
-	background-color:#ffff00;
-	color:#000000;
-	font-weight:bold;
-    }
-
-    #org-info-js-window
-    {
-	border-bottom:1px solid black;
-	padding-bottom:10px;
-	margin-bottom:10px;
-    }
-
-
-
-    .org-info-search-highlight
-    {
-	background-color:#adefef; /* same color as emacs default */
-	color:#000000;
-	font-weight:bold;
-    }
-
-    .org-bbdb-company {
-	/* bbdb-company */
-	font-style: italic;
-    }
-    .org-bbdb-field-name {
-    }
-    .org-bbdb-field-value {
-    }
-    .org-bbdb-name {
-	/* bbdb-name */
-	text-decoration: underline;
-    }
-    .org-bold {
-	/* bold */
-	font-weight: bold;
-    }
-    .org-bold-italic {
-	/* bold-italic */
-	font-weight: bold;
-	font-style: italic;
-    }
-    .org-border {
-	/* border */
-	background-color: #000000;
-    }
-    .org-buffer-menu-buffer {
-	/* buffer-menu-buffer */
-	font-weight: bold;
-    }
-    .org-builtin {
-	/* font-lock-builtin-face */
-	color: #da70d6;
-    }
-    .org-button {
-	/* button */
-	text-decoration: underline;
-    }
-    .org-c-nonbreakable-space {
-	/* c-nonbreakable-space-face */
-	background-color: #ff0000;
-	font-weight: bold;
-    }
-    .org-calendar-today {
-	/* calendar-today */
-	text-decoration: underline;
-    }
-    .org-comment {
-	/* font-lock-comment-face */
-	color: #b22222;
-    }
-    .org-comment-delimiter {
-	/* font-lock-comment-delimiter-face */
-	color: #b22222;
-    }
-    .org-constant {
-	/* font-lock-constant-face */
-	color: #5f9ea0;
-    }
-    .org-cursor {
-	/* cursor */
-	background-color: #000000;
-    }
-    .org-default {
-	/* default */
-	color: #000000;
-	background-color: #ffffff;
-    }
-    .org-diary {
-	/* diary */
-	color: #ff0000;
-    }
-    .org-doc {
-	/* font-lock-doc-face */
-	color: #bc8f8f;
-    }
-    .org-escape-glyph {
-	/* escape-glyph */
-	color: #a52a2a;
-    }
-    .org-file-name-shadow {
-	/* file-name-shadow */
-	color: #7f7f7f;
-    }
-    .org-fixed-pitch {
-    }
-    .org-fringe {
-	/* fringe */
-	background-color: #f2f2f2;
-    }
-    .org-function-name {
-	/* font-lock-function-name-face */
-	color: #0000ff;
-    }
-    .org-header-line {
-	/* header-line */
-	color: #333333;
-	background-color: #e5e5e5;
-    }
-    .org-help-argument-name {
-	/* help-argument-name */
-	font-style: italic;
-    }
-    .org-highlight {
-	/* highlight */
-	background-color: #b4eeb4;
-    }
-    .org-holiday {
-	/* holiday */
-	background-color: #ffc0cb;
-    }
-    .org-info-header-node {
-	/* info-header-node */
-	color: #a52a2a;
-	font-weight: bold;
-	font-style: italic;
-    }
-    .org-info-header-xref {
-	/* info-header-xref */
-	color: #0000ff;
-	text-decoration: underline;
-    }
-    .org-info-menu-header {
-	/* info-menu-header */
-	font-weight: bold;
-    }
-    .org-info-menu-star {
-	/* info-menu-star */
-	color: #ff0000;
-    }
-    .org-info-node {
-	/* info-node */
-	color: #a52a2a;
-	font-weight: bold;
-	font-style: italic;
-    }
-    .org-info-title-1 {
-	/* info-title-1 */
-	font-size: 172%;
-	font-weight: bold;
-    }
-    .org-info-title-2 {
-	/* info-title-2 */
-	font-size: 144%;
-	font-weight: bold;
-    }
-    .org-info-title-3 {
-	/* info-title-3 */
-	font-size: 120%;
-	font-weight: bold;
-    }
-    .org-info-title-4 {
-	/* info-title-4 */
-	font-weight: bold;
-    }
-    .org-info-xref {
-	/* info-xref */
-	color: #0000ff;
-	text-decoration: underline;
-    }
-    .org-isearch {
-	/* isearch */
-	color: #b0e2ff;
-	background-color: #cd00cd;
-    }
-    .org-italic {
-	/* italic */
-	font-style: italic;
-    }
-    .org-keyword {
-	/* font-lock-keyword-face */
-	color: #a020f0;
-    }
-    .org-lazy-highlight {
-	/* lazy-highlight */
-	background-color: #afeeee;
-    }
-    .org-link {
-	/* link */
-	color: #0000ff;
-	text-decoration: underline;
-    }
-    .org-link-visited {
-	/* link-visited */
-	color: #8b008b;
-	text-decoration: underline;
-    }
-    .org-match {
-	/* match */
-	background-color: #ffff00;
-    }
-    .org-menu {
-    }
-    .org-message-cited-text {
-	/* message-cited-text */
-	color: #ff0000;
-    }
-    .org-message-header-cc {
-	/* message-header-cc */
-	color: #191970;
-    }
-    .org-message-header-name {
-	/* message-header-name */
-	color: #6495ed;
-    }
-    .org-message-header-newsgroups {
-	/* message-header-newsgroups */
-	color: #00008b;
-	font-weight: bold;
-	font-style: italic;
-    }
-    .org-message-header-other {
-	/* message-header-other */
-	color: #4682b4;
-    }
-    .org-message-header-subject {
-	/* message-header-subject */
-	color: #000080;
-	font-weight: bold;
-    }
-    .org-message-header-to {
-	/* message-header-to */
-	color: #191970;
-	font-weight: bold;
-    }
-    .org-message-header-xheader {
-	/* message-header-xheader */
-	color: #0000ff;
-    }
-    .org-message-mml {
-	/* message-mml */
-	color: #228b22;
-    }
-    .org-message-separator {
-	/* message-separator */
-	color: #a52a2a;
-    }
-    .org-minibuffer-prompt {
-	/* minibuffer-prompt */
-	color: #0000cd;
-    }
-    .org-mm-uu-extract {
-	/* mm-uu-extract */
-	color: #006400;
-	background-color: #ffffe0;
-    }
-    .org-mode-line {
-	/* mode-line */
-	color: #000000;
-	background-color: #bfbfbf;
-    }
-    .org-mode-line-buffer-id {
-	/* mode-line-buffer-id */
-	font-weight: bold;
-    }
-    .org-mode-line-highlight {
-    }
-    .org-mode-line-inactive {
-	/* mode-line-inactive */
-	color: #333333;
-	background-color: #e5e5e5;
-    }
-    .org-mouse {
-	/* mouse */
-	background-color: #000000;
-    }
-    .org-negation-char {
-    }
-    .org-next-error {
-	/* next-error */
-	background-color: #eedc82;
-    }
-    .org-nobreak-space {
-	/* nobreak-space */
-	color: #a52a2a;
-	text-decoration: underline;
-    }
-    .org-org-agenda-date {
-	/* org-agenda-date */
-	color: #0000ff;
-    }
-    .org-org-agenda-date-weekend {
-	/* org-agenda-date-weekend */
-	color: #0000ff;
-	font-weight: bold;
-    }
-    .org-org-agenda-restriction-lock {
-	/* org-agenda-restriction-lock */
-	background-color: #ffff00;
-    }
-    .org-org-agenda-structure {
-	/* org-agenda-structure */
-	color: #0000ff;
-    }
-    .org-org-archived {
-	/* org-archived */
-	color: #7f7f7f;
-    }
-    .org-org-code {
-	/* org-code */
-	color: #7f7f7f;
-    }
-    .org-org-column {
-	/* org-column */
-	background-color: #e5e5e5;
-    }
-    .org-org-column-title {
-	/* org-column-title */
-	background-color: #e5e5e5;
-	font-weight: bold;
-	text-decoration: underline;
-    }
-    .org-org-date {
-	/* org-date */
-	color: #a020f0;
-	text-decoration: underline;
-    }
-    .org-org-done {
-	/* org-done */
-	color: #228b22;
-	font-weight: bold;
-    }
-    .org-org-drawer {
-	/* org-drawer */
-	color: #0000ff;
-    }
-    .org-org-ellipsis {
-	/* org-ellipsis */
-	color: #b8860b;
-	text-decoration: underline;
-    }
-    .org-org-formula {
-	/* org-formula */
-	color: #b22222;
-    }
-    .org-org-headline-done {
-	/* org-headline-done */
-	color: #bc8f8f;
-    }
-    .org-org-hide {
-	/* org-hide */
-	color: #e5e5e5;
-    }
-    .org-org-latex-and-export-specials {
-	/* org-latex-and-export-specials */
-	color: #8b4513;
-    }
-    .org-org-level-1 {
-	/* org-level-1 */
-	color: #0000ff;
-    }
-    .org-org-level-2 {
-	/* org-level-2 */
-	color: #b8860b;
-    }
-    .org-org-level-3 {
-	/* org-level-3 */
-	color: #a020f0;
-    }
-    .org-org-level-4 {
-	/* org-level-4 */
-	color: #b22222;
-    }
-    .org-org-level-5 {
-	/* org-level-5 */
-	color: #228b22;
-    }
-    .org-org-level-6 {
-	/* org-level-6 */
-	color: #5f9ea0;
-    }
-    .org-org-level-7 {
-	/* org-level-7 */
-	color: #da70d6;
-    }
-    .org-org-level-8 {
-	/* org-level-8 */
-	color: #bc8f8f;
-    }
-    .org-org-link {
-	/* org-link */
-	color: #a020f0;
-	text-decoration: underline;
-    }
-    .org-org-property-value {
-    }
-    .org-org-scheduled-previously {
-	/* org-scheduled-previously */
-	color: #b22222;
-    }
-    .org-org-scheduled-today {
-	/* org-scheduled-today */
-	color: #006400;
-    }
-    .org-org-sexp-date {
-	/* org-sexp-date */
-	color: #a020f0;
-    }
-    .org-org-special-keyword {
-	/* org-special-keyword */
-	color: #bc8f8f;
-    }
-    .org-org-table {
-	/* org-table */
-	color: #0000ff;
-    }
-    .org-org-tag {
-	/* org-tag */
-	font-weight: bold;
-    }
-    .org-org-target {
-	/* org-target */
-	text-decoration: underline;
-    }
-    .org-org-time-grid {
-	/* org-time-grid */
-	color: #b8860b;
-    }
-    .org-org-todo {
-	/* org-todo */
-	color: #ff0000;
-    }
-    .org-org-upcoming-deadline {
-	/* org-upcoming-deadline */
-	color: #b22222;
-    }
-    .org-org-verbatim {
-	/* org-verbatim */
-	color: #7f7f7f;
-	text-decoration: underline;
-    }
-    .org-org-warning {
-	/* org-warning */
-	color: #ff0000;
-	font-weight: bold;
-    }
-    .org-outline-1 {
-	/* outline-1 */
-	color: #0000ff;
-    }
-    .org-outline-2 {
-	/* outline-2 */
-	color: #b8860b;
-    }
-    .org-outline-3 {
-	/* outline-3 */
-	color: #a020f0;
-    }
-    .org-outline-4 {
-	/* outline-4 */
-	color: #b22222;
-    }
-    .org-outline-5 {
-	/* outline-5 */
-	color: #228b22;
-    }
-    .org-outline-6 {
-	/* outline-6 */
-	color: #5f9ea0;
-    }
-    .org-outline-7 {
-	/* outline-7 */
-	color: #da70d6;
-    }
-    .org-outline-8 {
-	/* outline-8 */
-	color: #bc8f8f;
-    }
-    .outline-text-1, .outline-text-2, .outline-text-3, .outline-text-4, .outline-text-5, .outline-text-6 {
-    /* Add more spacing between section. Padding, so that folding with org-info.js works as expected. */
-
-    }
-
-    .org-preprocessor {
-	/* font-lock-preprocessor-face */
-	color: #da70d6;
-    }
-    .org-query-replace {
-	/* query-replace */
-	color: #b0e2ff;
-	background-color: #cd00cd;
-    }
-    .org-regexp-grouping-backslash {
-	/* font-lock-regexp-grouping-backslash */
-	font-weight: bold;
-    }
-    .org-regexp-grouping-construct {
-	/* font-lock-regexp-grouping-construct */
-	font-weight: bold;
-    }
-    .org-region {
-	/* region */
-	background-color: #eedc82;
-    }
-    .org-rmail-highlight {
-    }
-    .org-scroll-bar {
-	/* scroll-bar */
-	background-color: #bfbfbf;
-    }
-    .org-secondary-selection {
-	/* secondary-selection */
-	background-color: #ffff00;
-    }
-    .org-shadow {
-	/* shadow */
-	color: #7f7f7f;
-    }
-    .org-show-paren-match {
-	/* show-paren-match */
-	background-color: #40e0d0;
-    }
-    .org-show-paren-mismatch {
-	/* show-paren-mismatch */
-	color: #ffffff;
-	background-color: #a020f0;
-    }
-    .org-string {
-	/* font-lock-string-face */
-	color: #bc8f8f;
-    }
-    .org-texinfo-heading {
-	/* texinfo-heading */
-	color: #0000ff;
-    }
-    .org-tool-bar {
-	/* tool-bar */
-	color: #000000;
-	background-color: #bfbfbf;
-    }
-    .org-tooltip {
-	/* tooltip */
-	color: #000000;
-	background-color: #ffffe0;
-    }
-    .org-trailing-whitespace {
-	/* trailing-whitespace */
-	background-color: #ff0000;
-    }
-    .org-type {
-	/* font-lock-type-face */
-	color: #228b22;
-    }
-    .org-underline {
-	/* underline */
-	text-decoration: underline;
-    }
-    .org-variable-name {
-	/* font-lock-variable-name-face */
-	color: #b8860b;
-    }
-    .org-variable-pitch {
-    }
-    .org-vertical-border {
-    }
-    .org-warning {
-	/* font-lock-warning-face */
-	color: #ff0000;
-	font-weight: bold;
-    }
-    .rss_box {}
-    .rss_title, rss_title a {}
-    .rss_items {}
-    .rss_item a:link, .rss_item a:visited, .rss_item a:active {}
-    .rss_item a:hover {}
-    .rss_date {}
-
-    pre.src {
-        position: static;
-        overflow: visible;
-        padding-top: 1.2em;
-    }
-
-    label.org-src-name {
-	font-size: 80%;
-	font-style: italic;
-    }
-
-    #show_source {margin: 0; padding: 0;}
-
-    #postamble {
-	font-size: 75%;
-	min-width: 700px;
-	max-width: 80%;
-	line-height: 14pt;
-	margin-left: 20px;
-	margin-top: 10px;
-	padding: .2em;
-	background-color: #ffffff;
-	z-index: -1000;
-    }
-
-
-} /* END OF @media all */
-
-@media screen
-{
-    #table-of-contents {
-	position: fixed;
-	margin-top: 105px;
-	float: right;
-	border: 1px solid #red;
-	max-width: 50%;
-	overflow: auto;
-    }
-} /* END OF @media screen */

src/Makefile.am

@@ -8,14 +8,15 @@ libqmckl_la_version = $(VERSION_MAJOR).$(VERSION_MINOR)
 #lib_LTLIBRARIES = libqmckl-$(libqmckl_so_version).la
 lib_LTLIBRARIES = libqmckl.la
 
+
 include generated.mk
-qmckl_h = $(top_srcdir)/include/qmckl.h
-qmckl_f = $(top_srcdir)/share/qmckl/fortran/qmckl_f.f90
 
 BUILT_SOURCES= $(C_FILES) $(F_FILES) $(FH_FUNC_FILES) $(FH_TYPE_FILES) $(H_FUNC_FILES) $(H_TYPE_FILES) $(H_PRIVATE_FUNC_FILES) $(H_PRIVATE_TYPE_FILES)
 
 libqmckl_la_CPPFLAGS = -I$(srcdir) -I$(top_srcdir)/include
-libqmckl_la_SOURCES = $(C_FILES) $(F_FILES) $(qmckl_h) $(qmckl_f) $(H_PRIVATE_FUNC_FILES) $(H_PRIVATE_TYPE_FILES)
+libqmckl_la_SOURCES = qmckl.h qmckl_f.f90 $(C_FILES) $(F_FILES) $(H_FUNC_FILES) $(H_TYPE_FILES) $(H_PRIVATE_FUNC_FILES) $(H_PRIVATE_TYPE_FILES)
+
+dist_src_DATA = $(ORG_FILES)
 
 tangle_verbose   = $(tangle_verbose_@AM_V@)
 tangle_verbose_  = $(tangle_verbose_@AM_DEFAULT_V@)
@@ -25,32 +26,24 @@ cat_h_verbose   = $(cat_h_verbose_@AM_V@)
 cat_h_verbose_  = $(cat_h_verbose_@AM_DEFAULT_V@)
 cat_h_verbose_0 = @echo "  HEADER   $@";
 
-
+SUFFIXES = .f90 .h .org .c _f.f90 _func.h _type.h _private_func.h _private_type.h
 
 export top_srcdir
 
+if QMCKL_DEVEL
+
 Makefile.in: generated.mk
 
 generated.mk: $(ORG_FILES)
-	$(top_srcdir)/tools/create_makefile.sh
+	cd $(top_srcdir) && ./tools/create_makefile.sh
 
 qmckl.h qmckl_f.f90: $(FH_FUNC_FILES) $(H_FUNC_FILES) $(H_TYPE_FILES)
 	$(cat_h_verbose)$(top_srcdir)/tools/build_qmckl_h.sh
 
-SUFFIXES = .f90 .h .org .c
+.org_private_func.h .org_private_type.h .org_type.h .org_func.h .org.h .org_f.f90 .org.c:
-
-.f90: $(ORG_FILES)
-	$(tangle_verbose)$(top_srcdir)/tools/tangle.sh $(ORG_FILES)
-
-.h: $(ORG_FILES)
-	$(tangle_verbose)$(top_srcdir)/tools/tangle.sh $(ORG_FILES)
-
-.org.c:
 	$(tangle_verbose)$(top_srcdir)/tools/tangle.sh $<
 
-$(qmckl_f): qmckl_f.f90
+.h .f90 _f.f90 _func.h _type.h _private_func.h _private_type.h .c: $(ORG_FILES)
-	mv qmckl_f.f90 $(qmckl_f)
-
-$(qmckl_h): qmckl.h
-	mv qmckl.h $(qmckl_h)
 
+CLEANFILES = $(BUILT_SOURCES) $(C_TEST_FILES) $(F_TEST_FILES) qmckl_f.f90 qmckl.h
+endif

src/Makefile.in

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-	    echo "$(subdir)/$$i"; \
-	  else \
-	    echo "$$sdir/$$i"; \
-	  fi; \
-	done >> $(top_builddir)/cscope.files
-
-distclean-tags:
-	-rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
-
-distdir: $(BUILT_SOURCES)
-	$(MAKE) $(AM_MAKEFLAGS) distdir-am
-
-distdir-am: $(DISTFILES)
-	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	list='$(DISTFILES)'; \
-	  dist_files=`for file in $$list; do echo $$file; done | \
-	  sed -e "s|^$$srcdirstrip/||;t" \
-	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
-	case $$dist_files in \
-	  */*) $(MKDIR_P) `echo "$$dist_files" | \
-			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
-			   sort -u` ;; \
-	esac; \
-	for file in $$dist_files; do \
-	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
-	  if test -d $$d/$$file; then \
-	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
-	    if test -d "$(distdir)/$$file"; then \
-	      find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
-	    fi; \
-	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
-	      cp -fpR $(srcdir)/$$file "$(distdir)$$dir" || exit 1; \
-	      find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
-	    fi; \
-	    cp -fpR $$d/$$file "$(distdir)$$dir" || exit 1; \
-	  else \
-	    test -f "$(distdir)/$$file" \
-	    || cp -p $$d/$$file "$(distdir)/$$file" \
-	    || exit 1; \
-	  fi; \
-	done
-	@list='$(DIST_SUBDIRS)'; for subdir in $$list; do \
-	  if test "$$subdir" = .; then :; else \
-	    $(am__make_dryrun) \
-	      || test -d "$(distdir)/$$subdir" \
-	      || $(MKDIR_P) "$(distdir)/$$subdir" \
-	      || exit 1; \
-	    dir1=$$subdir; dir2="$(distdir)/$$subdir"; \
-	    $(am__relativize); \
-	    new_distdir=$$reldir; \
-	    dir1=$$subdir; dir2="$(top_distdir)"; \
-	    $(am__relativize); \
-	    new_top_distdir=$$reldir; \
-	    echo " (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) top_distdir="$$new_top_distdir" distdir="$$new_distdir" \\"; \
-	    echo "     am__remove_distdir=: am__skip_length_check=: am__skip_mode_fix=: distdir)"; \
-	    ($(am__cd) $$subdir && \
-	      $(MAKE) $(AM_MAKEFLAGS) \
-	        top_distdir="$$new_top_distdir" \
-	        distdir="$$new_distdir" \
-		am__remove_distdir=: \
-		am__skip_length_check=: \
-		am__skip_mode_fix=: \
-	        distdir) \
-	      || exit 1; \
-	  fi; \
-	done
-check-am: all-am
-check: $(BUILT_SOURCES)
-	$(MAKE) $(AM_MAKEFLAGS) check-recursive
-all-am: Makefile $(LTLIBRARIES)
-installdirs: installdirs-recursive
-installdirs-am:
-	for dir in "$(DESTDIR)$(libdir)"; do \
-	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
-	done
-install: $(BUILT_SOURCES)
-	$(MAKE) $(AM_MAKEFLAGS) install-recursive
-install-exec: install-exec-recursive
-install-data: install-data-recursive
-uninstall: uninstall-recursive
-
-install-am: all-am
-	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
-
-installcheck: installcheck-recursive
-install-strip:
-	if test -z '$(STRIP)'; then \
-	  $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	    install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	      install; \
-	else \
-	  $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	    install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	    "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \
-	fi
-mostlyclean-generic:
-
-clean-generic:
-
-distclean-generic:
-	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-	-test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES)
-
-maintainer-clean-generic:
-	@echo "This command is intended for maintainers to use"
-	@echo "it deletes files that may require special tools to rebuild."
-	-test -z "$(BUILT_SOURCES)" || rm -f $(BUILT_SOURCES)
-clean: clean-recursive
-
-clean-am: clean-generic clean-libLTLIBRARIES clean-libtool \
-	mostlyclean-am
-
-distclean: distclean-recursive
-		-rm -f ./$(DEPDIR)/libqmckl_la-qmckl_ao.Plo
-	-rm -f ./$(DEPDIR)/libqmckl_la-qmckl_context.Plo
-	-rm -f ./$(DEPDIR)/libqmckl_la-qmckl_electron.Plo
-	-rm -f ./$(DEPDIR)/libqmckl_la-qmckl_error.Plo
-	-rm -f ./$(DEPDIR)/libqmckl_la-qmckl_memory.Plo
-	-rm -f ./$(DEPDIR)/libqmckl_la-qmckl_numprec.Plo
-	-rm -f Makefile
-distclean-am: clean-am distclean-compile distclean-generic \
-	distclean-tags
-
-dvi: dvi-recursive
-
-dvi-am:
-
-html: html-recursive
-
-html-am:
-
-info: info-recursive
-
-info-am:
-
-install-data-am:
-
-install-dvi: install-dvi-recursive
-
-install-dvi-am:
-
-install-exec-am: install-libLTLIBRARIES
-
-install-html: install-html-recursive
-
-install-html-am:
-
-install-info: install-info-recursive
-
-install-info-am:
-
-install-man:
-
-install-pdf: install-pdf-recursive
-
-install-pdf-am:
-
-install-ps: install-ps-recursive
-
-install-ps-am:
-
-installcheck-am:
-
-maintainer-clean: maintainer-clean-recursive
-		-rm -f ./$(DEPDIR)/libqmckl_la-qmckl_ao.Plo
-	-rm -f ./$(DEPDIR)/libqmckl_la-qmckl_context.Plo
-	-rm -f ./$(DEPDIR)/libqmckl_la-qmckl_electron.Plo
-	-rm -f ./$(DEPDIR)/libqmckl_la-qmckl_error.Plo
-	-rm -f ./$(DEPDIR)/libqmckl_la-qmckl_memory.Plo
-	-rm -f ./$(DEPDIR)/libqmckl_la-qmckl_numprec.Plo
-	-rm -f Makefile
-maintainer-clean-am: distclean-am maintainer-clean-generic
-
-mostlyclean: mostlyclean-recursive
-
-mostlyclean-am: mostlyclean-compile mostlyclean-generic \
-	mostlyclean-libtool
-
-pdf: pdf-recursive
-
-pdf-am:
-
-ps: ps-recursive
-
-ps-am:
-
-uninstall-am: uninstall-libLTLIBRARIES
-
-.MAKE: $(am__recursive_targets) all check install install-am \
-	install-strip
-
-.PHONY: $(am__recursive_targets) CTAGS GTAGS TAGS all all-am \
-	am--depfiles check check-am clean clean-generic \
-	clean-libLTLIBRARIES clean-libtool cscopelist-am ctags \
-	ctags-am distclean distclean-compile distclean-generic \
-	distclean-libtool distclean-tags distdir dvi dvi-am html \
-	html-am info info-am install install-am install-data \
-	install-data-am install-dvi install-dvi-am install-exec \
-	install-exec-am install-html install-html-am install-info \
-	install-info-am install-libLTLIBRARIES install-man install-pdf \
-	install-pdf-am install-ps install-ps-am install-strip \
-	installcheck installcheck-am installdirs installdirs-am \
-	maintainer-clean maintainer-clean-generic mostlyclean \
-	mostlyclean-compile mostlyclean-generic mostlyclean-libtool \
-	pdf pdf-am ps ps-am tags tags-am uninstall uninstall-am \
-	uninstall-libLTLIBRARIES
-
-.PRECIOUS: Makefile
-
-export LC_MESSAGES
-
-qmckl_ao.c: qmckl_ao.org qmckl_ao_func.h qmckl_ao_private_type.h qmckl_ao_private_func.h
-qmckl_ao_f.f90: qmckl_ao.org qmckl_ao_fh_func.f90 qmckl_f.o
-qmckl_ao_fh_func.f90: qmckl_ao.org
-qmckl_ao_func.h: qmckl_ao.org
-qmckl_ao_private_func.h: qmckl_ao.org
-qmckl_ao_private_type.h: qmckl_ao.org
-qmckl_context.c: qmckl_context.org qmckl_context_func.h qmckl_context_type.h qmckl_context_private_type.h
-qmckl_context_f.f90: qmckl_context_fh_func.f90 qmckl_context_fh_type.f90 qmckl_f.o
-qmckl_context_fh_func.f90: qmckl_context.org
-qmckl_context_fh_type.f90: qmckl_context.org
-qmckl_context_func.h: qmckl_context.org
-qmckl_context_private_type.h: qmckl_context.org
-qmckl_context_type.h: qmckl_context.org
-qmckl_distance.c: qmckl_distance_func.h
-qmckl_distance_f.f90: qmckl_distance.org qmckl_distance_fh_func.f90 qmckl_f.o
-qmckl_distance_fh_func.f90: qmckl_distance.org
-qmckl_distance_func.h: qmckl_distance.org
-qmckl_electron.c: qmckl_electron.org qmckl_electron_func.h qmckl_electron_private_type.h qmckl_electron_private_func.h
-qmckl_electron_f.f90: qmckl_electron.org qmckl_f.o
-qmckl_electron_func.h: qmckl_electron.org
-qmckl_electron_private_func.h: qmckl_electron.org
-qmckl_electron_private_type.h: qmckl_electron.org
-qmckl_error.c: qmckl_error.org qmckl_error_func.h qmckl_error_type.h qmckl_error_private_type.h
-qmckl_error_f.f90: qmckl_error_fh_func.f90 qmckl_error_fh_type.f90 qmckl_f.o
-qmckl_error_fh_func.f90: qmckl_error.org
-qmckl_error_fh_type.f90: qmckl_error.org
-qmckl_error_func.h: qmckl_error.org
-qmckl_error_private_type.h: qmckl_error.org
-qmckl_error_type.h: qmckl_error.org
-qmckl_memory.c: qmckl_memory.org qmckl_memory_func.h qmckl_memory_private_type.h qmckl_memory_private_func.h
-qmckl_memory_func.h: qmckl_memory.org
-qmckl_memory_private_func.h: qmckl_memory.org
-qmckl_memory_private_type.h: qmckl_memory.org
-qmckl_numprec.c: qmckl_numprec.org qmckl_numprec_func.h qmckl_numprec_type.h qmckl_numprec_private_type.h
-qmckl_numprec_f.f90: qmckl_numprec_fh_func.f90 qmckl_f.o
-qmckl_numprec_fh_func.f90: qmckl_numprec.org
-qmckl_numprec_func.h: qmckl_numprec.org
-qmckl_numprec_private_type.h: qmckl_numprec.org
-qmckl_numprec_type.h: qmckl_numprec.org
-test_qmckl_ao.c: qmckl_ao.org qmckl_ao.org qmckl_ao_func.h qmckl_ao_private_type.h qmckl_ao_private_func.h
-test_qmckl_ao_f.f90: qmckl_ao.org qmckl_f.o
-test_qmckl_context.c: qmckl_context.org qmckl_context.org qmckl_context_func.h qmckl_context_type.h qmckl_context_private_type.h
-test_qmckl_distance.c: qmckl_distance.org qmckl_distance_func.h
-test_qmckl_distance_f.f90: qmckl_distance.org qmckl_f.o
-test_qmckl_electron.c: qmckl_electron.org qmckl_electron.org qmckl_electron_func.h qmckl_electron_private_type.h qmckl_electron_private_func.h
-test_qmckl_error.c: qmckl_error.org qmckl_error.org qmckl_error_func.h qmckl_error_type.h qmckl_error_private_type.h
-test_qmckl_memory.c: qmckl_memory.org qmckl_memory.org qmckl_memory_func.h qmckl_memory_private_type.h qmckl_memory_private_func.h
-test_qmckl_numprec.c: qmckl_numprec.org qmckl_numprec.org qmckl_numprec_func.h qmckl_numprec_type.h qmckl_numprec_private_type.h
-
-export top_srcdir
-
-Makefile.in: generated.mk
-
-generated.mk: $(ORG_FILES)
-	$(top_srcdir)/tools/create_makefile.sh
-
-qmckl.h qmckl_f.f90: $(FH_FUNC_FILES) $(H_FUNC_FILES) $(H_TYPE_FILES)
-	$(cat_h_verbose)$(top_srcdir)/tools/build_qmckl_h.sh
-
-.f90: $(ORG_FILES)
-	$(tangle_verbose)$(top_srcdir)/tools/tangle.sh $(ORG_FILES)
-
-.h: $(ORG_FILES)
-	$(tangle_verbose)$(top_srcdir)/tools/tangle.sh $(ORG_FILES)
-
-.org.c:
-	$(tangle_verbose)$(top_srcdir)/tools/tangle.sh $<
-
-$(qmckl_f): qmckl_f.f90
-	mv qmckl_f.f90 $(qmckl_f)
-
-$(qmckl_h): qmckl.h
-	mv qmckl.h $(qmckl_h)
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:

tools/build_doc.sh

@@ -1,45 +1,39 @@
 #!/bin/bash
-# Script to build the documentation
+# Script to build the documentation.
+
+set -e
+
+if [[ -z ${srcdir} ]] ; then
+   echo "Error: srcdir environment variable is not defined"
+   exit 1
+fi
 
 
-readonly DOCS=${top_srcdir}/share/doc/qmckl/
+readonly DOCS=${srcdir}/share/doc/qmckl/
-readonly SRC=${top_srcdir}/src/
+readonly ORG=${srcdir}/org/
 readonly HTMLIZE=${DOCS}/html/htmlize.el
-readonly CONFIG_DOC=${top_srcdir}/tools/config_doc.el
+readonly CONFIG_DOC=${srcdir}/tools/config_doc.el
-readonly CONFIG_TANGLE=${top_srcdir}/tools/config_tangle.el
+readonly CONFIG_TANGLE=${srcdir}/tools/config_tangle.el
 
+# Checks that all the defined global variables correspond to files.
 
-
+for dir in ${DOCS}/html ${DOCS}/text ${ORG}
-
+do
-
+    if [[ ! -d ${dir} ]]
-function check_preconditions()
-{
-#   Checks that all the defined global variables correspond to files.
-
-    if [[ -z ${top_srcdir} ]]
     then
-        print "top_srcdir is not defined"
+        print "${dir} not found"
-        exit 1
+        exit 2
     fi
+done
 
-    for dir in ${DOCS}/html ${DOCS}/text ${SRC}
+for file in ${CONFIG_DOC} ${CONFIG_TANGLE}
-    do
+do
-        if [[ ! -d ${dir} ]]
+    if [[ ! -f ${file} ]]
-        then
+    then
-            print "${dir} not found"
+        print "${file} not found"
-            exit 2
+        exit 3
-        fi
+    fi
-    done
+done
-
-    for file in ${CONFIG_DOC} ${CONFIG_TANGLE}
-    do
-        if [[ ! -f ${file} ]]
-        then
-            print "${file} not found"
-            exit 3
-        fi
-    done
-}
 
 
 
@@ -53,7 +47,7 @@ function install_htmlize()
 
     [[ -f ${HTMLIZE} ]] || (
         cd ${DOCS}/html
-        git clone ${url} \
+        ${srcdir}/missing git clone ${url} \
             && cp ${repo}/htmlize.el ${HTMLIZE} \
             && rm -rf ${repo}
         cd -
@@ -71,8 +65,8 @@ function extract_doc()
 #   Extracts documentation from an org-mode file.
 
     local org=$1
-    local local_html=${SRC}/${org%.org}.html
+    local local_html=${ORG}/${org%.org}.html
-    local local_text=${SRC}/${org%.org}.txt
+    local local_text=${ORG}/${org%.org}.txt
     local html=${DOCS}/html/${org%.org}.html
     local text=${DOCS}/text/${org%.org}.txt
 
@@ -80,7 +74,7 @@ function extract_doc()
     then
         return
     fi
-    emacs --batch                    \
+    ${srcdir}/missing emacs --batch  \
           --load ${HTMLIZE}          \
           --load ${CONFIG_DOC}       \
           ${org}                     \
@@ -97,8 +91,6 @@ function extract_doc()
 
 function main() {
 
-    check_preconditions || exit 1
-
     # Install htmlize if needed
     install_htmlize || exit 2
 
@@ -108,7 +100,6 @@ function main() {
 
     for i in *.org
     do
-        echo
         echo "=======  ${i} ======="
         extract_doc ${i}
     done
@@ -122,5 +113,6 @@ function main() {
     else
         exit 3
     fi
+
 }
 main

tools/build_makefile.sh

@@ -0,0 +1,197 @@
+#!/bin/bash
+#
+# Creates all the dependencies from the org-mode files
+
+set -e
+
+if [[ -z ${srcdir} ]] ; then
+   echo "Error: srcdir environment variable is not defined"
+   exit 1
+fi
+
+WD=$PWD
+
+function make_src()
+{
+
+    cd ${srcdir}
+
+    declare -A DEPS DEPS_ORG
+
+    C_FILES=
+    F_FILES=
+    FH_FUNC_FILES=
+    FH_TYPE_FILES=
+    H_FUNC_FILES=
+    H_TYPE_FILES=
+    H_PRIVATE_FUNC_FILES=
+    H_PRIVATE_TYPE_FILES=
+    C_TEST_FILES=
+    F_TEST_FILES=
+
+    for org in org/*.org ; do
+        ORG_FILES+="\$(srcdir)/$org "
+        i=${org%.org}
+        i="\$(srcdir)/src/${i#org/}"
+        c="${i}.c"
+        o="${i}.o"
+        h_func="${i}_func.h"
+        h_type="${i}_type.h"
+        h_private_func="${i}_private_func.h"
+        h_private_type="${i}_private_type.h"
+        f90="${i}_f.f90"
+        fo="${i}_f.o"
+        fh_func="${i}_fh_func.f90"
+        fh_type="${i}_fh_type.f90"
+
+        grep -q "(eval c)" $org
+        if [[ $? -eq 0 ]] ; then
+            DEPS_ORG[$org]+="$c "
+            DEPS[$o]+=" $c "
+            C_FILES+=" $c"
+            C_O_FILES+=" $o"
+        fi
+
+        grep -q "(eval h_func)" $org
+        if [[ $? -eq 0 ]] ; then
+            DEPS_ORG[$org]+="$h_func "
+            DEPS[$o]+=" $h_func"
+            H_FUNC_FILES+=" $h_func"
+        fi
+
+        grep -q "(eval h_type)" $org
+        if [[ $? -eq 0 ]] ; then
+            DEPS_ORG[$org]+="$h_type "
+            DEPS[$o]+=" $h_type"
+            H_TYPE_FILES+=" $h_type"
+        fi
+
+        grep -q "(eval h_private_type)" $org
+        if [[ $? -eq 0 ]] ; then
+            DEPS_ORG[$org]+="$h_private_type "
+            DEPS[$o]+=" $h_private_type"
+            H_PRIVATE_TYPE_FILES+=" $h_private_type"
+        fi
+
+        grep -q "(eval h_private_func)" $org
+        if [[ $? -eq 0 ]] ; then
+            DEPS_ORG[$org]+="$h_private_func "
+            DEPS[$o]+=" $h_private_func"
+            H_PRIVATE_FUNC_FILES+=" $h_private_func"
+        fi
+
+        grep -q "(eval f)" $org
+        if [[ $? -eq 0 ]] ; then
+            DEPS_ORG[$org]+="$f90 "
+            DEPS[$fo]+="$f90 "
+            F_FILES+=" $f90"
+        fi
+
+        grep -q "(eval fh_func)" $org
+        if [[ $? -eq 0 ]] ; then
+            DEPS_ORG[$org]+="$fh_func "
+            DEPS[$fo]+=" $fh_func"
+            FH_FUNC_FILES+=" $fh_func"
+        fi
+
+        grep -q "(eval fh_type)" $org
+        if [[ $? -eq 0 ]] ; then
+            DEPS_ORG[$org]+="$fh_type "
+            DEPS[$fo]+=" $fh_type"
+            FH_TYPE_FILES+=" $fh_type"
+        fi
+    done
+
+    for org in org/*.org ; do
+        i=${org%.org}
+        i=${i#org/}
+        o="\$(srcdir)/src/${i}.o"
+        fo="\$(srcdir)/src/${i}_f.o"
+        c="\$(srcdir)/src/${i}.c"
+        f90="\$(srcdir)/src/${i}_f.f90"
+        c_test_o="\$(srcdir)/src/test_${i}.o"
+        f_test_o="\$(srcdir)/src/test_${i}_f.o"
+        c_test="\$(srcdir)/src/test_${i}.c"
+        f_test="\$(srcdir)/src/test_${i}_f.f90"
+        grep -q "(eval c_test)" $org
+        if [[ $? -eq 0 ]] ; then
+            DEPS_ORG[$org]+="$c_test "
+            DEPS[$c_test_o]+=" $c_test $o"
+            C_TEST_FILES+=" $c_test"
+        fi
+
+        grep -q "(eval f_test)" $org
+        if [[ $? -eq 0 ]] ; then
+            DEPS_ORG[$org]+="$f_test "
+            DEPS[$f_test_o]+=" $f_test $fo"
+            F_TEST_FILES+=" $f_test"
+        fi
+    done
+
+    for org in org/*.org ; do
+        i=${org%.org}
+        i="\$(srcdir)/src/${i#org/}"
+        c="${i}.c"
+        o="${i}.o"
+        fo="${i}_f.o"
+        for i in ${!DEPS[@]} ; do
+            extension="${i##*.}"
+            grep -q "$i" $org
+            if [[ $? -ne 0 ]] ; then
+                if [[ "$extension" == h ]] ; then
+                    DEPS[$o]+=" $i"
+                elif [[ "$extension" == f90 ]] ; then
+                    DEPS[$fo]+=" $i"
+                fi
+            fi
+        done
+    done
+
+    for f in ${!DEPS[@]} ; do
+        if [[ "${f/_f.o/_f.ox}" == ${f}x ]] ; then
+            DEPS["${f}"]+=" qmckl_f.o"
+        elif [[ "${f/.o/.ox}" == ${f}x ]] ; then
+            DEPS["$f"]+=" \$(qmckl_h)"
+        fi
+    done
+
+    OUTPUT=${WD}/generated.mk
+    echo > ${OUTPUT}
+    echo "## Source files" > ${OUTPUT}
+    echo >> ${OUTPUT}
+    echo "ORG_FILES=${ORG_FILES}" >> ${OUTPUT}
+    echo "C_FILES=${C_FILES}" >> ${OUTPUT}
+    echo "F_FILES=${F_FILES}" >> ${OUTPUT}
+    echo "C_O_FILES=${C_O_FILES}" >> ${OUTPUT}
+    echo "F_O_FILES=${F_O_FILES}" >> ${OUTPUT}
+    echo "FH_FUNC_FILES=${FH_FUNC_FILES}" >> ${OUTPUT}
+    echo "FH_TYPE_FILES=${FH_TYPE_FILES}" >> ${OUTPUT}
+    echo "H_FUNC_FILES=${H_FUNC_FILES}" >> ${OUTPUT}
+    echo "H_TYPE_FILES=${H_TYPE_FILES}" >> ${OUTPUT}
+    echo "H_PRIVATE_FUNC_FILES=${H_PRIVATE_FUNC_FILES}" >> ${OUTPUT}
+    echo "H_PRIVATE_TYPE_FILES=${H_PRIVATE_TYPE_FILES}" >> ${OUTPUT}
+    echo "C_TEST_FILES=${C_TEST_FILES}" >> ${OUTPUT}
+    echo "F_TEST_FILES=${F_TEST_FILES}" >> ${OUTPUT}
+    echo >> ${OUTPUT}
+
+    echo >> ${OUTPUT}
+    echo "## Org-mode inherited dependencies" >> ${OUTPUT}
+    echo >> ${OUTPUT}
+    for f in ${!DEPS_ORG[@]} ; do
+        echo ${DEPS_ORG[$f]}: $f
+        echo "	\$(tangle_verbose)\$(srcdir)/tools/tangle.sh $f"
+        echo ""
+    done >> ${OUTPUT}
+    echo >> ${OUTPUT}
+
+    echo >> ${OUTPUT}
+    echo "## Source dependencies" >> ${OUTPUT}
+    echo >> ${OUTPUT}
+    for f in ${!DEPS[@]} ; do
+        echo ${f}: ${DEPS[$f]}
+    done | sort >> ${OUTPUT}
+}
+
+
+make_src
+

tools/build_qmckl_f.sh

@@ -0,0 +1,91 @@
+#!/bin/bash
+# Script to build the final qmckl_f.f90 file
+
+set -e
+
+# All the produced header files are concatenated in the =qmckl_f.f90=
+# file, located in the share/qmckl/fortran directory.
+
+
+# Check required environment variables
+# ------------------------------------
+
+if [[ -z ${srcdir} ]] ; then
+   echo "Error: srcdir environment variable is not defined"
+   exit 1
+fi
+
+if [[ -z ${qmckl_f} ]] ; then
+   echo "Error: qmckl_f environment variable is not defined"
+   exit 1
+fi
+
+
+
+# Generate Fortran interface file
+# -------------------------------
+
+HEADERS_TYPE="${srcdir}/src/qmckl_*_fh_type.f90"
+HEADERS="${srcdir}/src/qmckl_*_fh_func.f90"
+
+OUTPUT="${qmckl_f}"
+cat << EOF > ${OUTPUT}
+!
+!    ------------------------------------------
+!     QMCkl - Quantum Monte Carlo kernel library
+!     ------------------------------------------
+!    
+!     Documentation : https://trex-coe.github.io/qmckl
+!     Issues        : https://github.com/trex-coe/qmckl/issues
+!    
+!     BSD 3-Clause License
+!     
+!     Copyright (c) 2020, TREX Center of Excellence
+!     All rights reserved.
+!     
+!     Redistribution and use in source and binary forms, with or without
+!     modification, are permitted provided that the following conditions are met:
+!     
+!     1. Redistributions of source code must retain the above copyright notice, this
+!        list of conditions and the following disclaimer.
+!     
+!     2. Redistributions in binary form must reproduce the above copyright notice,
+!        this list of conditions and the following disclaimer in the documentation
+!        and/or other materials provided with the distribution.
+!     
+!     3. Neither the name of the copyright holder nor the names of its
+!        contributors may be used to endorse or promote products derived from
+!        this software without specific prior written permission.
+!     
+!     THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+!     AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+!     IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+!     DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
+!     FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+!     DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+!     SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+!     CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+!     OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+!     OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+!     
+!     
+!    
+!    
+!
+module qmckl
+  use, intrinsic :: iso_c_binding
+EOF
+
+for i in ${HEADERS_TYPE}
+do
+    cat $i >> ${OUTPUT}
+done
+
+for i in ${HEADERS}
+do
+    cat $i >> ${OUTPUT}
+done
+
+cat << EOF >> ${OUTPUT}
+end module qmckl
+EOF

tools/build_qmckl_h.sh

@@ -5,26 +5,38 @@
 # file, located in the include directory. The =*_private.h= files
 # are excluded.
 
-# Put =.h= files in the correct order:
+set -e
 
 
+# Check required environment variables
+# ------------------------------------
+
+if [[ -z ${srcdir} ]] ; then
+   echo "Error: srcdir environment variable is not defined"
+   exit 1
+fi
+
+if [[ -z ${qmckl_h} ]] ; then
+   echo "Error: qmckl_h environment variable is not defined"
+   exit 1
+fi
+
+
+# Generate C header file
+# ----------------------
+
 HEADERS=""
-for i in $(cat table_of_contents)
+for i in $(cat ${srcdir}/org/table_of_contents)
 do
     HEADERS+="${i%.org}_type.h "
 done
 
-for i in $(cat table_of_contents)
+for i in $(cat ${srcdir}/org/table_of_contents)
 do
     HEADERS+="${i%.org}_func.h "
 done
 
-
+OUTPUT=${qmckl_h}
-
-# Generate C header file
-
-
-OUTPUT="qmckl.h"
 
 cat << EOF > ${OUTPUT}
 /*
@@ -80,8 +92,9 @@ EOF
 
 for i in ${HEADERS}
 do
-    if [[ -f $i ]] ; then
+    header=${srcdir}/src/$i 
-        cat $i >> ${OUTPUT}
+    if [[ -f $header ]] ; then
+        cat $header >> ${OUTPUT}
     fi
 done
 
@@ -90,71 +103,3 @@ cat << EOF >> ${OUTPUT}
 EOF
 
 
-
-# Generate Fortran interface file from all =qmckl_*_fh.f90= files
-
-
-HEADERS_TYPE="qmckl_*_fh_type.f90"
-HEADERS="qmckl_*_fh_func.f90"
-
-OUTPUT="qmckl_f.f90"
-cat << EOF > ${OUTPUT}
-!
-!    ------------------------------------------
-!     QMCkl - Quantum Monte Carlo kernel library
-!     ------------------------------------------
-!    
-!     Documentation : https://trex-coe.github.io/qmckl
-!     Issues        : https://github.com/trex-coe/qmckl/issues
-!    
-!     BSD 3-Clause License
-!     
-!     Copyright (c) 2020, TREX Center of Excellence
-!     All rights reserved.
-!     
-!     Redistribution and use in source and binary forms, with or without
-!     modification, are permitted provided that the following conditions are met:
-!     
-!     1. Redistributions of source code must retain the above copyright notice, this
-!        list of conditions and the following disclaimer.
-!     
-!     2. Redistributions in binary form must reproduce the above copyright notice,
-!        this list of conditions and the following disclaimer in the documentation
-!        and/or other materials provided with the distribution.
-!     
-!     3. Neither the name of the copyright holder nor the names of its
-!        contributors may be used to endorse or promote products derived from
-!        this software without specific prior written permission.
-!     
-!     THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
-!     AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
-!     IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
-!     DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
-!     FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
-!     DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
-!     SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
-!     CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
-!     OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
-!     OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-!     
-!     
-!    
-!    
-!
-module qmckl
-  use, intrinsic :: iso_c_binding
-EOF
-
-for i in ${HEADERS_TYPE}
-do
-    cat $i >> ${OUTPUT}
-done
-
-for i in ${HEADERS}
-do
-    cat $i >> ${OUTPUT}
-done
-
-cat << EOF >> ${OUTPUT}
-end module qmckl
-EOF

tools/config_tangle.el

@@ -34,16 +34,17 @@
 
 ; The following is required to compute the file names
 (setq pwd (file-name-directory buffer-file-name))
+(setq wd (concat pwd "/../src/"))
 (setq name (file-name-nondirectory (substring buffer-file-name 0 -4)))
-(setq f  (concat pwd name "_f.f90"))
+(setq f  (concat wd name "_f.f90"))
-(setq fh_func (concat pwd name "_fh_func.f90"))
+(setq fh_func (concat wd name "_fh_func.f90"))
-(setq fh_type (concat pwd name "_fh_type.f90"))
+(setq fh_type (concat wd name "_fh_type.f90"))
-(setq c  (concat pwd name ".c"))
+(setq c  (concat wd name ".c"))
-(setq h_func  (concat name "_func.h"))
+(setq h_func  (concat wd name "_func.h"))
-(setq h_type  (concat name "_type.h"))
+(setq h_type  (concat wd name "_type.h"))
-(setq h_private_type  (concat name "_private_type.h"))
+(setq h_private_type  (concat wd name "_private_type.h"))
-(setq h_private_func  (concat name "_private_func.h"))
+(setq h_private_func  (concat wd name "_private_func.h"))
-(setq c_test  (concat pwd "test_" name ".c"))
+(setq c_test  (concat wd "test_" name ".c"))
-(setq f_test  (concat pwd "test_" name "_f.f90"))
+(setq f_test  (concat wd "test_" name "_f.f90"))
 (org-babel-lob-ingest "../tools/lib.org")
 

tools/create_makefile.sh

@@ -1,146 +0,0 @@
-#!/bin/bash
-
-
-function org_files() {
-    echo ORG_FILES=$(echo *.org)
-}
-
-declare -A DEPS
-
-C_FILES=
-F_FILES=
-FH_FUNC_FILES=
-FH_TYPE_FILES=
-H_FUNC_FILES=
-H_TYPE_FILES=
-H_PRIVATE_FUNC_FILES=
-H_PRIVATE_TYPE_FILES=
-C_TEST_FILES=
-F_TEST_FILES=
-
-for org in qmckl_*.org ; do
-    i=${org%.org}
-    c=${i}.c
-    h_func=${i}_func.h
-    h_type=${i}_type.h
-    h_private_func=${i}_private_func.h
-    h_private_type=${i}_private_type.h
-    f90=${i}_f.f90
-    fh_func=${i}_fh_func.f90
-    fh_type=${i}_fh_type.f90
-
-    grep -q "(eval c)" $org
-    if [[ $? -eq 0 ]] ; then
-        DEPS["$c"]+=" $org"
-        C_FILES+=" $c"
-    fi
-
-    grep -q "(eval h_func)" $org
-    if [[ $? -eq 0 ]] ; then
-        DEPS[$h_func]+=" $org"
-        DEPS[$c]+=" $h_func"
-        H_FUNC_FILES+=" $h_func"
-    fi
-
-    grep -q "(eval h_type)" $org
-    if [[ $? -eq 0 ]] ; then
-        DEPS[$h_type]+=" $org"
-        DEPS[$c]+=" $h_type"
-        H_TYPE_FILES+=" $h_type"
-    fi
-
-    grep -q "(eval h_private_type)" $org
-    if [[ $? -eq 0 ]] ; then
-        DEPS[$h_private_type]+=" $org"
-        DEPS[$c]+=" $h_private_type"
-        H_PRIVATE_TYPE_FILES+=" $h_private_type"
-    fi
-
-    grep -q "(eval h_private_func)" $org
-    if [[ $? -eq 0 ]] ; then
-        DEPS[$h_private_func]+=" $org"
-        DEPS[$c]+=" $h_private_func"
-        H_PRIVATE_FUNC_FILES+=" $h_private_func"
-    fi
-
-    grep -q "(eval f)" $org
-    if [[ $? -eq 0 ]] ; then
-        DEPS[$f90]+=" $org"
-        F_FILES+=" $f90"
-    fi
-
-    grep -q "(eval fh_func)" $org
-    if [[ $? -eq 0 ]] ; then
-        DEPS[$fh_func]+=" $org"
-        DEPS[$f90]+=" $fh_func"
-        FH_FUNC_FILES+=" $fh_func"
-    fi
-
-    grep -q "(eval fh_type)" $org
-    if [[ $? -eq 0 ]] ; then
-        DEPS[$fh_type]+=" $org"
-        DEPS[$f90]+=" $fh_type"
-        FH_TYPE_FILES+=" $fh_type"
-    fi
-done
-
-for org in qmckl_*.org ; do
-    i=${org%.org}
-    c=${i}.c
-    f90=${i}.f90
-    c_test=test_${i}.c
-    f_test=test_${i}_f.f90
-    grep -q "(eval c_test)" $org
-    if [[ $? -eq 0 ]] ; then
-        DEPS[$c_test]+=" $org ${DEPS[$c]}"
-        C_TEST_FILES+=" $c_test"
-    fi
-
-    grep -q "(eval f_test)" $org
-    if [[ $? -eq 0 ]] ; then
-        DEPS[$f_test]+=" $org ${DEPS[$f90]}"
-        F_TEST_FILES+=" $f_test"
-    fi
-done
-
-for org in ${ORG_FILES} ; do
-    i=${org%.org}
-    c=${i}.c
-    f90=${i}.f90
-    for f in ${!DEPS[@]} ; do
-        extension="${f##*.}"
-        grep -q "$f" $org
-        if [[ $? -ne 0 ]] ; then
-            if [[ extension == ".h" ]] ; then
-                DEPS[$c]+=" $f"
-            elif [[ extension == ".f90" ]] ; then
-                DEPS[$f90]+=" $f"
-            fi
-        fi
-    done
-done
-
-for f in ${!DEPS[@]} ; do
-    if [[ "${f/_f.f90/_f.f90x}" == "${f}x" ]] ; then
-        DEPS["$f"]+=" qmckl_f.o"
-    fi
-done
-
-echo > generated.mk
-echo "C_FILES=${C_FILES}" >> generated.mk
-echo "F_FILES=${F_FILES}" >> generated.mk
-echo "FH_FUNC_FILES=${FH_FUNC_FILES}" >> generated.mk
-echo "FH_TYPE_FILES=${FH_TYPE_FILES}" >> generated.mk
-echo "H_FUNC_FILES=${H_FUNC_FILES}" >> generated.mk
-echo "H_TYPE_FILES=${H_TYPE_FILES}" >> generated.mk
-echo "H_PRIVATE_FUNC_FILES=${H_PRIVATE_FUNC_FILES}" >> generated.mk
-echo "H_PRIVATE_TYPE_FILES=${H_PRIVATE_TYPE_FILES}" >> generated.mk
-echo "C_TEST_FILES=${C_TEST_FILES}" >> generated.mk
-echo "F_TEST_FILES=${F_TEST_FILES}" >> generated.mk
-echo >> generated.mk
-
-for f in ${!DEPS[@]} ; do
-    echo ${f}: ${DEPS[$f]}
-done | sort >> generated.mk
-
-

tools/tangle.sh

@@ -8,12 +8,11 @@
 # date of the org file is older than one of the tangled files.
 # The =missing= script is used to check if emacs is present on the system.
 
-if [[ $(basename $PWD) != "src" ]] ; then
+if [[ -z ${srcdir} ]] ; then
-        print "Error: $0 needs to be run from src directory"
+  print "Error: srcdir environment variable is not defined"
-        exit 1
+  exit 1
 fi
 
-
 function tangle()
 {
     local org_file=$1
@@ -25,9 +24,9 @@ function tangle()
     elif [[ ${org_file} -ot ${f_file} ]] ; then
         return
     fi
-    ../missing \
+    ./missing \
         emacs --batch ${org_file} \
-         --load=${top_srcdir}/tools/config_tangle.el \
+         --load=${PWD}/tools/config_tangle.el \
         -f org-babel-tangle
 }