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Accelerated AO->MO transformation

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This commit is contained in:
Anthony Scemama 2022-03-28 16:53:36 +02:00
parent 5ecb1d6326
commit 9b1f648437
4 changed files with 274 additions and 88 deletions
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2
org/qmckl_ao.org
View File

@ -139,6 +139,7 @@ int main() {
| ~ao_num~ | ~int64_t~ | Number of AOs |
| ~ao_cartesian~ | ~bool~ | If true, use polynomials. Otherwise, use spherical harmonics |
| ~ao_factor~ | ~double[ao_num]~ | Normalization factor of the AO |
|---------------------+----------------------+----------------------------------------------------------------------|
For H_2 with the following basis set,
@ -2491,6 +2492,7 @@ free(ao_factor_test);
| ~shell_vgl_date~ | ~uint64_t~ | Last modification date of Value, gradients, Laplacian of the AOs at current positions |
| ~ao_vgl~ | ~double[point_num][5][ao_num]~ | Value, gradients, Laplacian of the primitives at current positions |
| ~ao_vgl_date~ | ~uint64_t~ | Last modification date of Value, gradients, Laplacian of the AOs at current positions |
|----------------------+-----------------------------------+----------------------------------------------------------------------------------------------|
*** After initialization

8
org/qmckl_determinant.org
View File

@ -1239,9 +1239,9 @@ assert(rc == QMCKL_SUCCESS);
assert(qmckl_ao_basis_provided(context));
double ao_vgl[5][walk_num][elec_num][chbrclf_ao_num];
double ao_vgl[walk_num*elec_num][5][chbrclf_ao_num];
rc = qmckl_get_ao_basis_ao_vgl(context, &(ao_vgl[0][0][0][0]), (int64_t) 5*walk_num*elec_num*chbrclf_ao_num);
rc = qmckl_get_ao_basis_ao_vgl(context, &(ao_vgl[0][0][0]), (int64_t) 5*walk_num*elec_num*chbrclf_ao_num);
assert (rc == QMCKL_SUCCESS);
/* Set up MO data */
@ -1256,8 +1256,8 @@ assert (rc == QMCKL_SUCCESS);
assert(qmckl_mo_basis_provided(context));
double mo_vgl[5][elec_num][chbrclf_mo_num];
rc = qmckl_get_mo_basis_vgl(context, &(mo_vgl[0][0][0]));
double mo_vgl[walk_num*elec_num][5][chbrclf_mo_num];
rc = qmckl_get_mo_basis_mo_vgl(context, &(mo_vgl[0][0][0]), 5*walk_num*elec_num*chbrclf_mo_num);
assert (rc == QMCKL_SUCCESS);
/* Set up determinant data */

8
org/qmckl_local_energy.org
View File

@ -655,9 +655,9 @@ assert(rc == QMCKL_SUCCESS);
assert(qmckl_ao_basis_provided(context));
double ao_vgl[5][walk_num][elec_num][chbrclf_ao_num];
double ao_vgl[walk_num*elec_num][5][chbrclf_ao_num];
rc = qmckl_get_ao_basis_ao_vgl(context, &(ao_vgl[0][0][0][0]),
rc = qmckl_get_ao_basis_ao_vgl(context, &(ao_vgl[0][0][0]),
(int64_t) 5*walk_num*elec_num*chbrclf_ao_num);
assert (rc == QMCKL_SUCCESS);
@ -673,8 +673,8 @@ assert (rc == QMCKL_SUCCESS);
assert(qmckl_mo_basis_provided(context));
double mo_vgl[5][elec_num][chbrclf_mo_num];
rc = qmckl_get_mo_basis_vgl(context, &(mo_vgl[0][0][0]));
double mo_vgl[walk_num*elec_num][5][chbrclf_mo_num];
rc = qmckl_get_mo_basis_mo_vgl(context, &(mo_vgl[0][0][0]), 5*walk_num*elec_num*chbrclf_mo_num);
assert (rc == QMCKL_SUCCESS);
/* Set up determinant data */

344
org/qmckl_mo.org
View File

@ -84,13 +84,14 @@ int main() {
The following arrays are stored in the context:
|---------------+--------------------+----------------------|
| ~mo_num~ | | Number of MOs |
| ~coefficient~ | ~[mo_num][ao_num]~ | Orbital coefficients |
|-----------------+--------------------+----------------------------------------|
| ~mo_num~ | | Number of MOs |
| ~coefficient~ | ~[mo_num][ao_num]~ | Orbital coefficients |
| ~coefficient_t~ | ~[ao_num][mo_num]~ | Transposed of the Orbital coefficients |
|-----------------+--------------------+----------------------------------------|
Computed data:
|---------------+--------------------------+-------------------------------------------------------------------------------------|
|---------------+--------------------------+-------------------------------------------------------------------------------------|
| ~mo_vgl~ | ~[point_num][5][mo_num]~ | Value, gradients, Laplacian of the MOs at point positions |
| ~mo_vgl_date~ | ~uint64_t~ | Late modification date of Value, gradients, Laplacian of the MOs at point positions |
@ -101,9 +102,10 @@ int main() {
#+begin_src c :comments org :tangle (eval h_private_type)
typedef struct qmckl_mo_basis_struct {
int64_t mo_num;
double * coefficient;
double * restrict coefficient;
double * restrict coefficient_t;
double * mo_vgl;
double * restrict mo_vgl;
uint64_t mo_vgl_date;
int32_t uninitialized;
@ -355,6 +357,34 @@ qmckl_exit_code qmckl_finalize_mo_basis(qmckl_context context) {
qmckl_context_struct* const ctx = (qmckl_context_struct* const) context;
assert (ctx != NULL);
qmckl_memory_info_struct mem_info = qmckl_memory_info_struct_zero;
mem_info.size = ctx->ao_basis.ao_num * ctx->mo_basis.mo_num * sizeof(double);
double* new_array = (double*) qmckl_malloc(context, mem_info);
if (new_array == NULL) {
return qmckl_failwith( context,
QMCKL_ALLOCATION_FAILED,
"qmckl_finalize_mo_basis",
NULL);
}
assert (ctx->mo_basis.coefficient != NULL);
if (ctx->mo_basis.coefficient_t != NULL) {
qmckl_exit_code rc = qmckl_free(context, ctx->mo_basis.coefficient);
if (rc != QMCKL_SUCCESS) {
return qmckl_failwith( context, rc,
"qmckl_finalize_mo_basis",
NULL);
}
}
for (int64_t i=0 ; i<ctx->ao_basis.ao_num ; ++i) {
for (int64_t j=0 ; j<ctx->mo_basis.mo_num ; ++j) {
new_array[i*ctx->mo_basis.mo_num + j] = ctx->mo_basis.coefficient[j*ctx->ao_basis.ao_num + i];
}
}
ctx->mo_basis.coefficient_t = new_array;
qmckl_exit_code rc = QMCKL_SUCCESS;
return rc;
}
@ -367,11 +397,18 @@ qmckl_exit_code qmckl_finalize_mo_basis(qmckl_context context) {
*** Get
#+begin_src c :comments org :tangle (eval h_func) :noweb yes
qmckl_exit_code qmckl_get_mo_basis_vgl(qmckl_context context, double* const mo_vgl);
qmckl_exit_code
qmckl_get_mo_basis_mo_vgl(qmckl_context context,
double* const mo_vgl,
const int64_t size_max);
#+end_src
#+begin_src c :comments org :tangle (eval c) :noweb yes :exports none
qmckl_exit_code qmckl_get_mo_basis_vgl(qmckl_context context, double* const mo_vgl) {
qmckl_exit_code
qmckl_get_mo_basis_mo_vgl(qmckl_context context,
double* const mo_vgl,
const int64_t size_max)
{
if (qmckl_context_check(context) == QMCKL_NULL_CONTEXT) {
return QMCKL_NULL_CONTEXT;
@ -388,7 +425,13 @@ qmckl_exit_code qmckl_get_mo_basis_vgl(qmckl_context context, double* const mo_v
qmckl_context_struct* const ctx = (qmckl_context_struct* const) context;
assert (ctx != NULL);
size_t sze = 5 * ctx->point.num * ctx->mo_basis.mo_num;
size_t sze = ctx->point.num * 5 * ctx->mo_basis.mo_num;
if (size_max < sze) {
return qmckl_failwith( context,
QMCKL_INVALID_ARG_3,
"qmckl_get_mo_basis_mo_vgl",
"input array too small");
}
memcpy(mo_vgl, ctx->mo_basis.mo_vgl, sze * sizeof(double));
return QMCKL_SUCCESS;
@ -396,17 +439,84 @@ qmckl_exit_code qmckl_get_mo_basis_vgl(qmckl_context context, double* const mo_v
#+end_src
#+begin_src f90 :tangle (eval fh_func) :comments org :exports none
interface
integer(c_int32_t) function qmckl_get_mo_basis_vgl (context, mo_vgl) &
bind(C)
use, intrinsic :: iso_c_binding
import
implicit none
interface
integer(c_int32_t) function qmckl_get_mo_basis_mo_vgl (context, &
mo_vgl, size_max) bind(C)
use, intrinsic :: iso_c_binding
import
implicit none
integer (c_int64_t) , intent(in) , value :: context
double precision, intent(out) :: mo_vgl(*)
integer (c_int64_t) , intent(in) , value :: size_max
end function qmckl_get_mo_basis_mo_vgl
end interface
#+end_src
integer (c_int64_t) , intent(in) , value :: context
double precision, intent(out) :: mo_vgl(*)
end function
end interface
Uses the given array to compute the VGL.
#+begin_src c :comments org :tangle (eval h_func) :noweb yes
qmckl_exit_code
qmckl_get_mo_basis_mo_vgl_inplace (qmckl_context context,
double* const mo_vgl,
const int64_t size_max);
#+end_src
#+begin_src c :comments org :tangle (eval c) :noweb yes :exports none
qmckl_exit_code
qmckl_get_mo_basis_mo_vgl_inplace (qmckl_context context,
double* const mo_vgl,
const int64_t size_max)
{
if (qmckl_context_check(context) == QMCKL_NULL_CONTEXT) {
return qmckl_failwith( context,
QMCKL_INVALID_CONTEXT,
"qmckl_get_mo_basis_mo_vgl",
NULL);
}
qmckl_exit_code rc;
qmckl_context_struct* const ctx = (qmckl_context_struct* const) context;
assert (ctx != NULL);
int64_t sze = ctx->mo_basis.mo_num * 5 * ctx->point.num;
if (size_max < sze) {
return qmckl_failwith( context,
QMCKL_INVALID_ARG_3,
"qmckl_get_mo_basis_mo_vgl",
"input array too small");
}
rc = qmckl_context_touch(context);
if (rc != QMCKL_SUCCESS) return rc;
double* old_array = ctx->mo_basis.mo_vgl;
ctx->mo_basis.mo_vgl = mo_vgl;
rc = qmckl_provide_mo_vgl(context);
if (rc != QMCKL_SUCCESS) return rc;
ctx->mo_basis.mo_vgl = old_array;
return QMCKL_SUCCESS;
}
#+end_src
#+begin_src f90 :tangle (eval fh_func) :comments org :exports none
interface
integer(c_int32_t) function qmckl_get_mo_basis_mo_vgl_inplace (context, &
mo_vgl, size_max) bind(C)
use, intrinsic :: iso_c_binding
import
implicit none
integer (c_int64_t) , intent(in) , value :: context
double precision, intent(out) :: mo_vgl(*)
integer (c_int64_t) , intent(in) , value :: size_max
end function qmckl_get_mo_basis_mo_vgl_inplace
end interface
#+end_src
*** Provide
@ -462,19 +572,19 @@ qmckl_exit_code qmckl_provide_mo_vgl(qmckl_context context)
if (mo_vgl == NULL) {
return qmckl_failwith( context,
QMCKL_ALLOCATION_FAILED,
"qmckl_mo_basis_vgl",
"qmckl_mo_basis_mo_vgl",
NULL);
}
ctx->mo_basis.mo_vgl = mo_vgl;
}
rc = qmckl_compute_mo_basis_vgl(context,
ctx->ao_basis.ao_num,
ctx->mo_basis.mo_num,
ctx->point.num,
ctx->mo_basis.coefficient,
ctx->ao_basis.ao_vgl,
ctx->mo_basis.mo_vgl);
rc = qmckl_compute_mo_basis_mo_vgl(context,
ctx->ao_basis.ao_num,
ctx->mo_basis.mo_num,
ctx->point.num,
ctx->mo_basis.coefficient_t,
ctx->ao_basis.ao_vgl,
ctx->mo_basis.mo_vgl);
if (rc != QMCKL_SUCCESS) {
return rc;
}
@ -488,25 +598,34 @@ qmckl_exit_code qmckl_provide_mo_vgl(qmckl_context context)
*** Compute
:PROPERTIES:
:Name: qmckl_compute_mo_basis_vgl
:Name: qmckl_compute_mo_basis_mo_vgl
:CRetType: qmckl_exit_code
:FRetType: qmckl_exit_code
:END:
#+NAME: qmckl_mo_basis_vgl_args
| ~qmckl_context~ | ~context~ | in | Global state |
| ~int64_t~ | ~ao_num~ | in | Number of AOs |
| ~int64_t~ | ~mo_num~ | in | Number of MOs |
| ~int64_t~ | ~point_num~ | in | Number of points |
| ~double~ | ~coef_normalized[mo_num][ao_num]~ | in | AO to MO transformation matrix |
| ~double~ | ~ao_vgl[point_num][5][ao_num]~ | in | Value, gradients and Laplacian of the AOs |
| ~double~ | ~mo_vgl[point_num][5][mo_num]~ | out | Value, gradients and Laplacian of the MOs |
#+NAME: qmckl_mo_basis_mo_vgl_args
| Variable | Type | In/Out | Description |
|---------------------+--------------------------------+--------+-------------------------------------------------|
| ~context~ | ~qmckl_context~ | in | Global state |
| ~ao_num~ | ~int64_t~ | in | Number of AOs |
| ~mo_num~ | ~int64_t~ | in | Number of MOs |
| ~point_num~ | ~int64_t~ | in | Number of points |
| ~coef_normalized_t~ | ~double[mo_num][ao_num]~ | in | Transpose of the AO to MO transformation matrix |
| ~ao_vgl~ | ~double[point_num][5][ao_num]~ | in | Value, gradients and Laplacian of the AOs |
| ~mo_vgl~ | ~double[point_num][5][mo_num]~ | out | Value, gradients and Laplacian of the MOs |
The matrix of AO values is very sparse, so we use a sparse-dense
matrix multiplication instead of a dgemm, as exposed in
https://dx.doi.org/10.1007/978-3-642-38718-0_14.
#+begin_src f90 :comments org :tangle (eval f) :noweb yes
integer function qmckl_compute_mo_basis_vgl_f(context, &
integer function qmckl_compute_mo_basis_mo_vgl_doc_f(context, &
ao_num, mo_num, point_num, &
coef_normalized, ao_vgl, mo_vgl) &
coef_normalized_t, ao_vgl, mo_vgl) &
result(info)
use qmckl
implicit none
@ -514,55 +633,69 @@ integer function qmckl_compute_mo_basis_vgl_f(context, &
integer*8 , intent(in) :: ao_num, mo_num
integer*8 , intent(in) :: point_num
double precision , intent(in) :: ao_vgl(ao_num,5,point_num)
double precision , intent(in) :: coef_normalized(ao_num,mo_num)
double precision , intent(in) :: coef_normalized_t(ao_num,mo_num)
double precision , intent(out) :: mo_vgl(mo_num,5,point_num)
character :: TransA, TransB
double precision :: alpha, beta
integer*8 :: M, N, K, LDA, LDB, LDC, i,j
integer :: i,j,k
double precision :: c1, c2, c3, c4, c5
TransA = 'T'
TransB = 'N'
M = mo_num
N = point_num*5_8
K = int(ao_num,8)
alpha = 1.d0
beta = 0.d0
LDA = size(coef_normalized,1)
LDB = size(ao_vgl,1)
LDC = size(mo_vgl,1)
do j=1,point_num
mo_vgl(:,:,j) = 0.d0
do k=1,ao_num
if (ao_vgl(k,1,j) /= 0.d0) then
c1 = ao_vgl(k,1,j)
c2 = ao_vgl(k,2,j)
c3 = ao_vgl(k,3,j)
c4 = ao_vgl(k,4,j)
c5 = ao_vgl(k,5,j)
do i=1,mo_num
mo_vgl(i,1,j) = mo_vgl(i,1,j) + coef_normalized_t(i,k) * c1
mo_vgl(i,2,j) = mo_vgl(i,2,j) + coef_normalized_t(i,k) * c2
mo_vgl(i,3,j) = mo_vgl(i,3,j) + coef_normalized_t(i,k) * c3
mo_vgl(i,4,j) = mo_vgl(i,4,j) + coef_normalized_t(i,k) * c4
mo_vgl(i,5,j) = mo_vgl(i,5,j) + coef_normalized_t(i,k) * c5
end do
end if
end do
end do
info = qmckl_dgemm(context,TransA, TransB, M, N, K, alpha, &
coef_normalized, int(size(coef_normalized,1),8), &
ao_vgl, int(size(ao_vgl,1),8), beta, &
mo_vgl,LDC)
info = QMCKL_SUCCESS
end function qmckl_compute_mo_basis_vgl_f
end function qmckl_compute_mo_basis_mo_vgl_doc_f
#+end_src
#+CALL: generate_c_header(table=qmckl_mo_basis_vgl_args,rettyp=get_value("CRetType"),fname="qmckl_compute_mo_basis_vgl"))
#+CALL: generate_c_header(table=qmckl_mo_basis_mo_vgl_args,rettyp=get_value("CRetType"),fname="qmckl_compute_mo_basis_mo_vgl"))
#+RESULTS:
#+begin_src c :tangle (eval h_func) :comments org
qmckl_exit_code qmckl_compute_mo_basis_vgl (
const qmckl_context context,
const int64_t ao_num,
const int64_t mo_num,
const int64_t point_num,
const double* coef_normalized,
const double* ao_vgl,
double* const mo_vgl );
qmckl_exit_code qmckl_compute_mo_basis_mo_vgl (
const qmckl_context context,
const int64_t ao_num,
const int64_t mo_num,
const int64_t point_num,
const double* coef_normalized_t,
const double* ao_vgl,
double* const mo_vgl );
#+end_src
#+CALL: generate_c_header(table=qmckl_mo_basis_mo_vgl_args,rettyp=get_value("CRetType"),fname="qmckl_compute_mo_basis_mo_vgl_doc"))
#+CALL: generate_c_interface(table=qmckl_mo_basis_vgl_args,rettyp=get_value("CRetType"),fname="qmckl_compute_mo_basis_vgl"))
#+RESULTS:
#+begin_src c :tangle (eval h_func) :comments org
qmckl_exit_code qmckl_compute_mo_basis_mo_vgl_doc (
const qmckl_context context,
const int64_t ao_num,
const int64_t mo_num,
const int64_t point_num,
const double* coef_normalized_t,
const double* ao_vgl,
double* const mo_vgl );
#+end_src
#+CALL: generate_c_interface(table=qmckl_mo_basis_mo_vgl_args,rettyp=get_value("CRetType"),fname="qmckl_compute_mo_basis_mo_vgl_doc"))
#+RESULTS:
#+begin_src f90 :tangle (eval f) :comments org :exports none
integer(c_int32_t) function qmckl_compute_mo_basis_vgl &
(context, ao_num, mo_num, point_num, coef_normalized, ao_vgl, mo_vgl) &
bind(C) result(info)
integer(c_int32_t) function qmckl_compute_mo_basis_mo_vgl_doc &
(context, ao_num, mo_num, point_num, coef_normalized_t, ao_vgl, mo_vgl) &
bind(C) result(info)
use, intrinsic :: iso_c_binding
implicit none
@ -571,15 +704,66 @@ end function qmckl_compute_mo_basis_vgl_f
integer (c_int64_t) , intent(in) , value :: ao_num
integer (c_int64_t) , intent(in) , value :: mo_num
integer (c_int64_t) , intent(in) , value :: point_num
real (c_double ) , intent(in) :: coef_normalized(ao_num,mo_num)
real (c_double ) , intent(in) :: coef_normalized_t(ao_num,mo_num)
real (c_double ) , intent(in) :: ao_vgl(ao_num,5,point_num)
real (c_double ) , intent(out) :: mo_vgl(mo_num,5,point_num)
integer(c_int32_t), external :: qmckl_compute_mo_basis_vgl_f
info = qmckl_compute_mo_basis_vgl_f &
(context, ao_num, mo_num, point_num, coef_normalized, ao_vgl, mo_vgl)
integer(c_int32_t), external :: qmckl_compute_mo_basis_mo_vgl_doc_f
info = qmckl_compute_mo_basis_mo_vgl_doc_f &
(context, ao_num, mo_num, point_num, coef_normalized_t, ao_vgl, mo_vgl)
end function qmckl_compute_mo_basis_vgl
end function qmckl_compute_mo_basis_mo_vgl_doc
#+end_src
#+begin_src c :tangle (eval c) :comments org
qmckl_exit_code
qmckl_compute_mo_basis_mo_vgl (const qmckl_context context,
const int64_t ao_num,
const int64_t mo_num,
const int64_t point_num,
const double* coef_normalized_t,
const double* ao_vgl,
double* const mo_vgl )
{
#ifdef HAVE_HPC
return qmckl_compute_mo_basis_mo_vgl_hpc (context, ao_num, mo_num, point_num, coef_normalized_t, ao_vgl, mo_vgl);
#else
return qmckl_compute_mo_basis_mo_vgl_doc (context, ao_num, mo_num, point_num, coef_normalized_t, ao_vgl, mo_vgl);
#endif
}
#+end_src
*** HPC version
#+begin_src c :tangle (eval h_func) :comments org
#ifdef HAVE_HPC
qmckl_exit_code
qmckl_compute_mo_basis_mo_vgl_hpc (const qmckl_context context,
const int64_t ao_num,
const int64_t mo_num,
const int64_t point_num,
const double* coef_normalized_t,
const double* ao_vgl,
double* const mo_vgl );
#endif
#+end_src
#+begin_src c :tangle (eval c) :comments org
#ifdef HAVE_HPC
qmckl_exit_code
qmckl_compute_mo_basis_mo_vgl_hpc (const qmckl_context context,
const int64_t ao_num,
const int64_t mo_num,
const int64_t point_num,
const double* restrict coef_normalized_t,
const double* restrict ao_vgl,
double* restrict const mo_vgl )
{
return qmckl_compute_mo_basis_mo_vgl_doc (context, ao_num, mo_num, point_num, coef_normalized_t, ao_vgl, mo_vgl);
}
#endif
#+end_src
*** Test
@ -772,7 +956,7 @@ assert (rc == QMCKL_SUCCESS);
assert(qmckl_mo_basis_provided(context));
double mo_vgl[walk_num*elec_num][5][chbrclf_mo_num];
rc = qmckl_get_mo_basis_vgl(context, &(mo_vgl[0][0][0]));
rc = qmckl_get_mo_basis_mo_vgl(context, &(mo_vgl[0][0][0]), walk_num*elec_num*5*chbrclf_mo_num);
assert (rc == QMCKL_SUCCESS);
// Test overlap of MO
@ -807,7 +991,7 @@ assert (rc == QMCKL_SUCCESS);
//
// // Calculate value of MO (1st electron)
// double mo_vgl[5][walk_num][elec_num][chbrclf_mo_num];
// rc = qmckl_get_mo_basis_vgl(context, &(mo_vgl[0][0][0][0]));
// rc = qmckl_get_mo_basis_mo_vgl(context, &(mo_vgl[0][0][0][0]));
// assert (rc == QMCKL_SUCCESS);
// ovlmo1 += mo_vgl[0][0][0][0]*mo_vgl[0][0][0][0]*dr3;
// }