Fixing CI

src/Makefile

@@ -20,7 +20,7 @@ OBJECT_FILES=$(filter-out $(EXCLUDED_OBJECTS), $(patsubst %.org,%.o,$(ORG_SOURCE
 INCLUDE=-I$(QMCKL_ROOT)/include/
 
 # Compiler options
-  
+
 #  GNU, Intel and LLVM compilers are supported. Choose here:
 
 
@@ -42,14 +42,14 @@ FFLAGS=-fPIC  $(INCLUDE) \
 	-fcheck=all -Waliasing -Wampersand -Wconversion -Wsurprising \
 	-Wintrinsics-std -Wno-tabs -Wintrinsic-shadow -Wline-truncation \
 	-Wreal-q-constant -Wuninitialized  -fbacktrace -finit-real=nan \
-	-ffpe-trap=zero,overflow,underflow 
+	-ffpe-trap=zero,overflow,underflow
 
-LIBS+=-lgfortran -lm 
+LIBS+=-lgfortran -lm
 #----------------------------------------------------------
 endif
 
 # Intel
-   
+
 
 ifeq ($(COMPILER),INTEL)
 #----------------------------------------------------------
@@ -65,7 +65,7 @@ CC=icc -xHost
 endif
 
 # LLVM
-   
+
 
 ifeq ($(COMPILER),LLVM)
 #----------------------------------------------------------
@@ -87,7 +87,7 @@ endif
 .PHONY: clean
 .SECONDARY: # Needed to keep the produced C and Fortran files
 
-libqmckl.so: Makefile.generated 
+libqmckl.so: Makefile.generated
 	$(MAKE) -f Makefile.generated
 
 ../include/qmckl.h: libqmckl.so
@@ -97,7 +97,7 @@ test: Makefile.generated ../include/qmckl.h
 	$(MAKE) -f Makefile.generated test
 
 doc: $(ORG_SOURCE_FILES)
-	$(QMCKL_ROOT)/tools/create_doc.sh 
+	$(QMCKL_ROOT)/tools/build_doc.sh
 
 clean:
 	$(RM)	test_qmckl_* test_qmckl.c test_qmckl \

src/test_qmckl.org

@@ -65,9 +65,9 @@ echo "#+end_src"
   #+begin_src c :tangle no
     { (char*) "test_qmckl_error", test_qmckl_error, NULL,NULL,MUNIT_TEST_OPTION_NONE,NULL},
     { (char*) "test_qmckl_context", test_qmckl_context, NULL,NULL,MUNIT_TEST_OPTION_NONE,NULL},
-//  { (char*) "test_qmckl_memory", test_qmckl_memory, NULL,NULL,MUNIT_TEST_OPTION_NONE,NULL},
+    { (char*) "test_qmckl_memory", test_qmckl_memory, NULL,NULL,MUNIT_TEST_OPTION_NONE,NULL},
-//  { (char*) "test_qmckl_distance", test_qmckl_distance, NULL,NULL,MUNIT_TEST_OPTION_NONE,NULL},
+    { (char*) "test_qmckl_distance", test_qmckl_distance, NULL,NULL,MUNIT_TEST_OPTION_NONE,NULL},
-//  { (char*) "test_qmckl_ao", test_qmckl_ao, NULL,NULL,MUNIT_TEST_OPTION_NONE,NULL},
+    { (char*) "test_qmckl_ao", test_qmckl_ao, NULL,NULL,MUNIT_TEST_OPTION_NONE,NULL},
   #+end_src
   :end:
 

tools/Building.org

@@ -10,9 +10,9 @@ echo "This file was created by tools/Building.org"
 
   #+NAME: check-src
   #+begin_src bash
-if [[ $(basename $PWD) != "src" ]] ; then
+if [[ $(basename ${PWD}) != "src" ]] ; then
-        echo "This script needs to be run in the src directory"
+    echo "This script needs to be run in the src directory"
-        exit -1
+    exit -1
 fi
   #+end_src
 
@@ -200,22 +200,26 @@ Makefile.generated: Makefile $(QMCKL_ROOT)/tools/create_makefile.sh  $(ORG_SOURC
 
   The file is not tangled if the last modification date of the org
   file is less recent than one of the tangled files.
+
   #+begin_src bash
 function tangle()
 {
-    if [[ -f ${1%.org}.c && $1 -ot ${1%.org}.c ]]
+    local org_file=$1
-    then return
+    local c_file=${org_file%.org}.c
-    elif [[ -f ${1%.org}.f90 && $1 -ot ${1%.org}.f90 ]]
+    local f_file=${org_file%.org}.f90
-    then return
-    fi
-    emacs --batch $1 --load=../tools/config_tangle.el -f org-babel-tangle
-}
 
+    if [[ ${org_file} -ot ${c_file} ]] ; then
+        return
+    elif [[ ${org_file} -ot ${f_file} ]] ; then
+        return
+    fi
+    emacs --batch ${org_file} --load=../tools/config_tangle.el -f org-babel-tangle
+}
 
 for i in $@
 do
-        echo "--- $i ----"
+    echo "--- ${i} ----"
-        tangle $i
+    tangle ${i}
 done
   #+end_src
 
@@ -247,14 +251,9 @@ ${QMCKL_ROOT}/tools/tangle.sh *.org
 
   #+begin_src bash
 OBJECTS="qmckl_f.o"
-for i in $(ls qmckl_*.c) ; do
+for i in $(ls qmckl_*.c qmckl_*f.f90) ; do
-    FILE=${i%.c}
+    FILE=${i%.*}
-    OBJECTS="${OBJECTS} ${FILE}.o"
+    OBJECTS+=" ${FILE}.o"
-done >> $OUTPUT
-
-for i in $(ls qmckl*_f.f90) ; do
-    FILE=${i%.f90}
-    OBJECTS="${OBJECTS} ${FILE}.o"
 done >> $OUTPUT
   #+end_src
 
@@ -263,8 +262,8 @@ done >> $OUTPUT
   #+begin_src bash
 TESTS=""
 for i in $(ls test_qmckl_*.c) ; do
-    FILE=${i%.c}.o
+    FILE=${i%.c}
-    TESTS="${TESTS} ${FILE}"
+    TESTS+=" ${FILE}.o"
 done >> $OUTPUT
   #+end_src
 
@@ -273,8 +272,8 @@ done >> $OUTPUT
   #+begin_src bash
 TESTS_F=""
 for i in $(ls test_qmckl_*_f.f90) ; do
-    FILE=${i%.f90}.o
+    FILE=${i%.f90}
-    TESTS_F="${TESTS_F} ${FILE}"
+    TESTS_F+=" ${FILE}.o"
 done >> $OUTPUT
   #+end_src
 

tools/build_qmckl_h.sh

@@ -69,7 +69,7 @@ cat << EOF > ${OUTPUT}
  *     OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
  *     
  *     
- *     
+ *    
  *    
  */
 
@@ -139,7 +139,7 @@ cat << EOF > ${OUTPUT}
 !     OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 !     
 !     
-!     
+!    
 !    
 !
 module qmckl

tools/config_tangle.el

@@ -14,7 +14,6 @@
                                    ("gnu" . 10)))
 
 
-(require 'htmlize)
 (require 'font-lock)
 (setq org-confirm-babel-evaluate nil)
 (global-font-lock-mode t)

tools/create_makefile.sh

@@ -7,7 +7,7 @@
 #   This script generates the Makefile that compiles the library.
 #   The ~OUTPUT~ variable contains the name of the generated Makefile,typically
 #   =Makefile.generated=.
-  
+
 
 # This file was created by tools/Building.org
 
@@ -29,14 +29,9 @@ ${QMCKL_ROOT}/tools/tangle.sh *.org
 
 
 OBJECTS="qmckl_f.o"
-for i in $(ls qmckl_*.c) ; do
+for i in $(ls qmckl_*.c qmckl_*f.f90) ; do
-    FILE=${i%.c}
+    FILE=${i%.*}
-    OBJECTS="${OBJECTS} ${FILE}.o"
+    OBJECTS+=" ${FILE}.o"
-done >> $OUTPUT
-
-for i in $(ls qmckl*_f.f90) ; do
-    FILE=${i%.f90}
-    OBJECTS="${OBJECTS} ${FILE}.o"
 done >> $OUTPUT
 
 
@@ -46,8 +41,8 @@ done >> $OUTPUT
 
 TESTS=""
 for i in $(ls test_qmckl_*.c) ; do
-    FILE=${i%.c}.o
+    FILE=${i%.c}
-    TESTS="${TESTS} ${FILE}"
+    TESTS+=" ${FILE}.o"
 done >> $OUTPUT
 
 
@@ -57,8 +52,8 @@ done >> $OUTPUT
 
 TESTS_F=""
 for i in $(ls test_qmckl_*_f.f90) ; do
-    FILE=${i%.f90}.o
+    FILE=${i%.f90}
-    TESTS_F="${TESTS_F} ${FILE}"
+    TESTS_F+=" ${FILE}.o"
 done >> $OUTPUT
 
 
@@ -68,7 +63,7 @@ done >> $OUTPUT
 
 cat << EOF > ${OUTPUT}
 CC=$CC
-CFLAGS=$CFLAGS -I../munit/ 
+CFLAGS=$CFLAGS -I../munit/
 
 FC=$FC
 FFLAGS=$FFLAGS
@@ -80,8 +75,8 @@ LIBS=$LIBS
 
 libqmckl.so: \$(OBJECT_FILES)
 	\$(CC) -shared \$(OBJECT_FILES) -o libqmckl.so
-           
+
-%.o: %.c 
+%.o: %.c
 	\$(CC) \$(CFLAGS) -c \$*.c -o \$*.o
 
 %.o: %.f90 qmckl_f.o

tools/tangle.sh

@@ -19,19 +19,23 @@
 # The file is not tangled if the last modification date of the org
 # file is less recent than one of the tangled files.
 
+
 function tangle()
 {
-    if [[ -f ${1%.org}.c && $1 -ot ${1%.org}.c ]]
+    local org_file=$1
-    then return
+    local c_file=${org_file%.org}.c
-    elif [[ -f ${1%.org}.f90 && $1 -ot ${1%.org}.f90 ]]
+    local f_file=${org_file%.org}.f90
-    then return
-    fi
-    emacs --batch $1 --load=../tools/config_tangle.el -f org-babel-tangle
-}
 
+    if [[ ${org_file} -ot ${c_file} ]] ; then
+        return
+    elif [[ ${org_file} -ot ${f_file} ]] ; then
+        return
+    fi
+    emacs --batch ${org_file} --load=../tools/config_tangle.el -f org-babel-tangle
+}
 
 for i in $@
 do
-        echo "--- $i ----"
+    echo "--- ${i} ----"
-        tangle $i
+    tangle ${i}
 done