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@ -3,7 +3,7 @@
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"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
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<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
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<head>
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<!-- 2024-12-13 Fri 15:08 -->
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<!-- 2024-12-13 Fri 15:44 -->
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<meta http-equiv="Content-Type" content="text/html;charset=utf-8" />
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<meta name="viewport" content="width=device-width, initial-scale=1" />
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<title>QMCkl source code documentation</title>
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@ -375,7 +375,7 @@ and bug reports should be submitted at
|
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</div>
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||||
<div id="postamble" class="status">
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<p class="author">Author: TREX CoE</p>
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<p class="date">Created: 2024-12-13 Fri 15:08</p>
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||||
<p class="date">Created: 2024-12-13 Fri 15:44</p>
|
||||
<p class="validation"><a href="http://validator.w3.org/check?uri=referer">Validate</a></p>
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||||
</div>
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||||
</body>
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||||
118
qmckl.html
118
qmckl.html
@ -3,7 +3,7 @@
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"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
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<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
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<head>
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<!-- 2024-12-13 Fri 15:08 -->
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<!-- 2024-12-13 Fri 15:44 -->
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<meta http-equiv="Content-Type" content="text/html;charset=utf-8" />
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<meta name="viewport" content="width=device-width, initial-scale=1" />
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<title>Introduction</title>
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||||
@ -346,36 +346,36 @@ for the JavaScript code in this tag.
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||||
<h2>Table of Contents</h2>
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||||
<div id="text-table-of-contents">
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||||
<ul>
|
||||
<li><a href="#org51701b6">1. Installing QMCkl</a>
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||||
<li><a href="#orgc93ba1b">1. Installing QMCkl</a>
|
||||
<ul>
|
||||
<li><a href="#orgfe28ae7">1.1. Installing from the released tarball (for end users)</a></li>
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||||
<li><a href="#org2cc76f5">1.2. Installing from the source repository (for developers)</a></li>
|
||||
<li><a href="#org5b74a43">1.1. Installing from the released tarball (for end users)</a></li>
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||||
<li><a href="#org3a5177d">1.2. Installing from the source repository (for developers)</a></li>
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||||
</ul>
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||||
</li>
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||||
<li><a href="#orgd7e9197">2. Using QMCkl</a></li>
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||||
<li><a href="#org9a9df06">3. Developing in QMCkl</a>
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||||
<li><a href="#orgf130790">2. Using QMCkl</a></li>
|
||||
<li><a href="#orgf51af0f">3. Developing in QMCkl</a>
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||||
<ul>
|
||||
<li><a href="#orgc727204">3.1. Literate programming</a></li>
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||||
<li><a href="#org1bf8615">3.2. Source code editing</a></li>
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||||
<li><a href="#org366f573">3.3. Choice of the programming language</a></li>
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||||
<li><a href="#org912ea0f">3.4. Coding rules</a></li>
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<li><a href="#orgbc8535f">3.5. Design of the library</a></li>
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<li><a href="#org223fc0b">3.6. Naming conventions</a></li>
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||||
<li><a href="#org60470a9">3.7. Application programming interface</a></li>
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<li><a href="#orgba4d9b5">3.8. Global state</a></li>
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<li><a href="#orgf052a76">3.9. Headers</a></li>
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||||
<li><a href="#org4f09b49">3.10. Low-level functions</a></li>
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||||
<li><a href="#org160572f">3.11. High-level functions</a></li>
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||||
<li><a href="#org11c7f40">3.12. Numerical precision</a></li>
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<li><a href="#org6c3dda5">3.13. Algorithms</a></li>
|
||||
<li><a href="#org639d5ba">3.1. Literate programming</a></li>
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||||
<li><a href="#org4afd0d2">3.2. Source code editing</a></li>
|
||||
<li><a href="#org561ccc7">3.3. Choice of the programming language</a></li>
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||||
<li><a href="#org1fe03e3">3.4. Coding rules</a></li>
|
||||
<li><a href="#orga0b5745">3.5. Design of the library</a></li>
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||||
<li><a href="#org013a29a">3.6. Naming conventions</a></li>
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||||
<li><a href="#org821004c">3.7. Application programming interface</a></li>
|
||||
<li><a href="#org05c1c42">3.8. Global state</a></li>
|
||||
<li><a href="#org4095637">3.9. Headers</a></li>
|
||||
<li><a href="#org905c4f1">3.10. Low-level functions</a></li>
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||||
<li><a href="#org8d662ca">3.11. High-level functions</a></li>
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||||
<li><a href="#org40df108">3.12. Numerical precision</a></li>
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<li><a href="#org859ae2a">3.13. Algorithms</a></li>
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</ul>
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</li>
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</ul>
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</div>
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</div>
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||||
<div id="outline-container-org51701b6" class="outline-2">
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||||
<h2 id="org51701b6"><span class="section-number-2">1</span> Installing QMCkl</h2>
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||||
<div id="outline-container-orgc93ba1b" class="outline-2">
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||||
<h2 id="orgc93ba1b"><span class="section-number-2">1</span> Installing QMCkl</h2>
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<div class="outline-text-2" id="text-1">
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||||
<p>
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The latest version fo QMCkl can be downloaded
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@ -384,8 +384,8 @@ The latest version fo QMCkl can be downloaded
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||||
</p>
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||||
</div>
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||||
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||||
<div id="outline-container-orgfe28ae7" class="outline-3">
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<h3 id="orgfe28ae7"><span class="section-number-3">1.1</span> Installing from the released tarball (for end users)</h3>
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<div id="outline-container-org5b74a43" class="outline-3">
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||||
<h3 id="org5b74a43"><span class="section-number-3">1.1</span> Installing from the released tarball (for end users)</h3>
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<div class="outline-text-3" id="text-1-1">
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<p>
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QMCkl is built with GNU Autotools, so the usual
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@ -400,8 +400,8 @@ options are defined using <code>CFLAGS</code> and <code>FCFLAGS</code>.
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</div>
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</div>
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<div id="outline-container-org2cc76f5" class="outline-3">
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<h3 id="org2cc76f5"><span class="section-number-3">1.2</span> Installing from the source repository (for developers)</h3>
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||||
<div id="outline-container-org3a5177d" class="outline-3">
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||||
<h3 id="org3a5177d"><span class="section-number-3">1.2</span> Installing from the source repository (for developers)</h3>
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||||
<div class="outline-text-3" id="text-1-2">
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||||
<p>
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To compile from the source repository, additional dependencies are
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@ -422,8 +422,8 @@ to be executed first.
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</div>
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</div>
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<div id="outline-container-orgd7e9197" class="outline-2">
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<h2 id="orgd7e9197"><span class="section-number-2">2</span> Using QMCkl</h2>
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||||
<div id="outline-container-orgf130790" class="outline-2">
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<h2 id="orgf130790"><span class="section-number-2">2</span> Using QMCkl</h2>
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<div class="outline-text-2" id="text-2">
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<p>
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The <code>qmckl.h</code> header file installed in the <code>${prefix}/include</code> directory
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@ -452,12 +452,12 @@ Both files are located in the <code>include/</code> directory.
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</div>
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</div>
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||||
<div id="outline-container-org9a9df06" class="outline-2">
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||||
<h2 id="org9a9df06"><span class="section-number-2">3</span> Developing in QMCkl</h2>
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||||
<div id="outline-container-orgf51af0f" class="outline-2">
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<h2 id="orgf51af0f"><span class="section-number-2">3</span> Developing in QMCkl</h2>
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<div class="outline-text-2" id="text-3">
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||||
</div>
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||||
<div id="outline-container-orgc727204" class="outline-3">
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<h3 id="orgc727204"><span class="section-number-3">3.1</span> Literate programming</h3>
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||||
<div id="outline-container-org639d5ba" class="outline-3">
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<h3 id="org639d5ba"><span class="section-number-3">3.1</span> Literate programming</h3>
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<div class="outline-text-3" id="text-3-1">
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||||
<p>
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In a traditional source code, most of the lines of source files of a program
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@ -507,8 +507,8 @@ tarball contains the generated source code.
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</div>
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</div>
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<div id="outline-container-org1bf8615" class="outline-3">
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<h3 id="org1bf8615"><span class="section-number-3">3.2</span> Source code editing</h3>
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||||
<div id="outline-container-org4afd0d2" class="outline-3">
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||||
<h3 id="org4afd0d2"><span class="section-number-3">3.2</span> Source code editing</h3>
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<div class="outline-text-3" id="text-3-2">
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||||
<p>
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||||
For a tutorial on literate programming with org-mode, follow <a href="http://www.howardism.org/Technical/Emacs/literate-programming-tutorial.html">this link</a>.
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||||
@ -539,8 +539,8 @@ org-mode.
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||||
</div>
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||||
</div>
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||||
<div id="outline-container-org366f573" class="outline-3">
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<h3 id="org366f573"><span class="section-number-3">3.3</span> Choice of the programming language</h3>
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<div id="outline-container-org561ccc7" class="outline-3">
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<h3 id="org561ccc7"><span class="section-number-3">3.3</span> Choice of the programming language</h3>
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<div class="outline-text-3" id="text-3-3">
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<p>
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||||
Most of the codes of the <a href="https://trex-coe.eu">TREX CoE</a> are written in Fortran with some
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@ -604,8 +604,8 @@ For more guidelines on using Fortran to generate a C interface, see
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||||
</div>
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</div>
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||||
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||||
<div id="outline-container-org912ea0f" class="outline-3">
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||||
<h3 id="org912ea0f"><span class="section-number-3">3.4</span> Coding rules</h3>
|
||||
<div id="outline-container-org1fe03e3" class="outline-3">
|
||||
<h3 id="org1fe03e3"><span class="section-number-3">3.4</span> Coding rules</h3>
|
||||
<div class="outline-text-3" id="text-3-4">
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||||
<p>
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||||
The authors should follow the recommendations of the C99
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||||
@ -625,8 +625,8 @@ make cppcheck ; cat cppcheck.out
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||||
</div>
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||||
</div>
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||||
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||||
<div id="outline-container-orgbc8535f" class="outline-3">
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||||
<h3 id="orgbc8535f"><span class="section-number-3">3.5</span> Design of the library</h3>
|
||||
<div id="outline-container-orga0b5745" class="outline-3">
|
||||
<h3 id="orga0b5745"><span class="section-number-3">3.5</span> Design of the library</h3>
|
||||
<div class="outline-text-3" id="text-3-5">
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||||
<p>
|
||||
The proposed API should allow the library to: deal with memory transfers
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||||
@ -637,8 +637,8 @@ functions (see below).
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||||
</div>
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||||
</div>
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||||
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||||
<div id="outline-container-org223fc0b" class="outline-3">
|
||||
<h3 id="org223fc0b"><span class="section-number-3">3.6</span> Naming conventions</h3>
|
||||
<div id="outline-container-org013a29a" class="outline-3">
|
||||
<h3 id="org013a29a"><span class="section-number-3">3.6</span> Naming conventions</h3>
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||||
<div class="outline-text-3" id="text-3-6">
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||||
<p>
|
||||
To avoid namespace collisions, we use <code>qmckl_</code> as a prefix for all exported
|
||||
@ -659,8 +659,8 @@ form is allowed.
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||||
</div>
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||||
</div>
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||||
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||||
<div id="outline-container-org60470a9" class="outline-3">
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||||
<h3 id="org60470a9"><span class="section-number-3">3.7</span> Application programming interface</h3>
|
||||
<div id="outline-container-org821004c" class="outline-3">
|
||||
<h3 id="org821004c"><span class="section-number-3">3.7</span> Application programming interface</h3>
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||||
<div class="outline-text-3" id="text-3-7">
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<p>
|
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In the C language, the number of bits used by the integer types can change
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@ -692,15 +692,15 @@ bindings in other languages in other repositories.
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</div>
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</div>
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<div id="outline-container-orgba4d9b5" class="outline-3">
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||||
<h3 id="orgba4d9b5"><span class="section-number-3">3.8</span> Global state</h3>
|
||||
<div id="outline-container-org05c1c42" class="outline-3">
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||||
<h3 id="org05c1c42"><span class="section-number-3">3.8</span> Global state</h3>
|
||||
<div class="outline-text-3" id="text-3-8">
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||||
<p>
|
||||
Global variables should be avoided in the library, because it is
|
||||
possible that one single program needs to use multiple instances
|
||||
of the library. To solve this problem we propose to use a pointer
|
||||
to a <a href="./qmckl_context.html"><code>context</code></a> variable, built by the library with the
|
||||
<code>qmckl_context_create</code> function. The <a id="orgf7db7e3">=context=</a> contains the global
|
||||
<code>qmckl_context_create</code> function. The <a id="org6381f2a">=context=</a> contains the global
|
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state of the library, and is used as the first argument of many
|
||||
QMCkl functions.
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||||
</p>
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||||
@ -714,8 +714,8 @@ the state is done by setters and getters, prefixed by
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||||
</div>
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</div>
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||||
<div id="outline-container-orgf052a76" class="outline-3">
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||||
<h3 id="orgf052a76"><span class="section-number-3">3.9</span> Headers</h3>
|
||||
<div id="outline-container-org4095637" class="outline-3">
|
||||
<h3 id="org4095637"><span class="section-number-3">3.9</span> Headers</h3>
|
||||
<div class="outline-text-3" id="text-3-9">
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||||
<p>
|
||||
A single <code>qmckl.h</code> header to be distributed by the library
|
||||
@ -803,8 +803,8 @@ and the types definitions should be written in the <code>*fh_type.f90</code> fil
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org4f09b49" class="outline-3">
|
||||
<h3 id="org4f09b49"><span class="section-number-3">3.10</span> Low-level functions</h3>
|
||||
<div id="outline-container-org905c4f1" class="outline-3">
|
||||
<h3 id="org905c4f1"><span class="section-number-3">3.10</span> Low-level functions</h3>
|
||||
<div class="outline-text-3" id="text-3-10">
|
||||
<p>
|
||||
Low-level functions are very simple functions which are leaves of
|
||||
@ -813,14 +813,14 @@ the function call tree (they don't call any other QMCkl function).
|
||||
|
||||
<p>
|
||||
These functions are <i>pure</i>, and unaware of the QMCkl
|
||||
<a href="#orgf7db7e3"><code>context</code></a>. They are not allowed to allocate/deallocate memory, and
|
||||
<a href="#org6381f2a"><code>context</code></a>. They are not allowed to allocate/deallocate memory, and
|
||||
if they need temporary memory it should be provided in input.
|
||||
</p>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org160572f" class="outline-3">
|
||||
<h3 id="org160572f"><span class="section-number-3">3.11</span> High-level functions</h3>
|
||||
<div id="outline-container-org8d662ca" class="outline-3">
|
||||
<h3 id="org8d662ca"><span class="section-number-3">3.11</span> High-level functions</h3>
|
||||
<div class="outline-text-3" id="text-3-11">
|
||||
<p>
|
||||
High-level functions are at the top of the function call tree.
|
||||
@ -832,8 +832,8 @@ temporary storage, to simplify the use of accelerators.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org11c7f40" class="outline-3">
|
||||
<h3 id="org11c7f40"><span class="section-number-3">3.12</span> Numerical precision</h3>
|
||||
<div id="outline-container-org40df108" class="outline-3">
|
||||
<h3 id="org40df108"><span class="section-number-3">3.12</span> Numerical precision</h3>
|
||||
<div class="outline-text-3" id="text-3-12">
|
||||
<p>
|
||||
The minimal number of bits of precision required for a function
|
||||
@ -841,7 +841,7 @@ should be given as an input of low-level computational
|
||||
functions. This input will be used to define the values of the
|
||||
different thresholds that might be used to avoid computing
|
||||
unnecessary noise. High-level functions will use the precision
|
||||
specified in the <a href="#orgf7db7e3"><code>context</code></a> variable.
|
||||
specified in the <a href="#org6381f2a"><code>context</code></a> variable.
|
||||
</p>
|
||||
|
||||
<p>
|
||||
@ -909,8 +909,8 @@ following points :
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org6c3dda5" class="outline-3">
|
||||
<h3 id="org6c3dda5"><span class="section-number-3">3.13</span> Algorithms</h3>
|
||||
<div id="outline-container-org859ae2a" class="outline-3">
|
||||
<h3 id="org859ae2a"><span class="section-number-3">3.13</span> Algorithms</h3>
|
||||
<div class="outline-text-3" id="text-3-13">
|
||||
<p>
|
||||
Reducing the scaling of an algorithm usually implies also reducing
|
||||
@ -926,7 +926,7 @@ implemented adapted to different problem sizes.
|
||||
</div>
|
||||
<div id="postamble" class="status">
|
||||
<p class="author">Author: TREX CoE</p>
|
||||
<p class="date">Created: 2024-12-13 Fri 15:08</p>
|
||||
<p class="date">Created: 2024-12-13 Fri 15:44</p>
|
||||
<p class="validation"><a href="http://validator.w3.org/check?uri=referer">Validate</a></p>
|
||||
</div>
|
||||
</body>
|
||||
|
||||
218
qmckl_ao.html
218
qmckl_ao.html
@ -3,7 +3,7 @@
|
||||
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
|
||||
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
|
||||
<head>
|
||||
<!-- 2024-12-13 Fri 15:09 -->
|
||||
<!-- 2024-12-13 Fri 15:45 -->
|
||||
<meta http-equiv="Content-Type" content="text/html;charset=utf-8" />
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1" />
|
||||
<title>Atomic Orbitals</title>
|
||||
@ -346,62 +346,62 @@ for the JavaScript code in this tag.
|
||||
<h2>Table of Contents</h2>
|
||||
<div id="text-table-of-contents">
|
||||
<ul>
|
||||
<li><a href="#org7419d37">1. Introduction</a></li>
|
||||
<li><a href="#orgb42b5a6">2. Context</a>
|
||||
<li><a href="#orgc444a78">1. Introduction</a></li>
|
||||
<li><a href="#org693c580">2. Context</a>
|
||||
<ul>
|
||||
<li><a href="#org119573c">2.1. Constant data</a>
|
||||
<li><a href="#org85c813c">2.1. Constant data</a>
|
||||
<ul>
|
||||
<li><a href="#orga1630fc">2.1.1. Initialization functions</a>
|
||||
<li><a href="#org73548f8">2.1.1. Initialization functions</a>
|
||||
<ul>
|
||||
<li><a href="#org300bfba">2.1.1.1. C interface</a></li>
|
||||
<li><a href="#org6306b00">2.1.1.2. Fortran interface</a></li>
|
||||
<li><a href="#org9211578">2.1.1.1. C interface</a></li>
|
||||
<li><a href="#org62dce6f">2.1.1.2. Fortran interface</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#orgb5849a4">2.1.2. Access functions</a>
|
||||
<li><a href="#org0de0336">2.1.2. Access functions</a>
|
||||
<ul>
|
||||
<li><a href="#orgd086733">2.1.2.1. C interface</a></li>
|
||||
<li><a href="#org3b4f13d">2.1.2.2. Fortran interface</a></li>
|
||||
<li><a href="#orgfb100c7">2.1.2.1. C interface</a></li>
|
||||
<li><a href="#orgf500818">2.1.2.2. Fortran interface</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#org351c031">2.2. Computed data</a>
|
||||
<li><a href="#orgd36d890">2.2. Computed data</a>
|
||||
<ul>
|
||||
<li><a href="#org5c3128f">2.2.1. After initialization</a></li>
|
||||
<li><a href="#orgea228ea">2.2.2. <span class="todo TODO">TODO</span> HPC-specific data structures</a></li>
|
||||
<li><a href="#orgb42402c">2.2.3. Access functions</a></li>
|
||||
<li><a href="#orgd5badd0">2.2.1. After initialization</a></li>
|
||||
<li><a href="#org538b7b6">2.2.2. <span class="todo TODO">TODO</span> HPC-specific data structures</a></li>
|
||||
<li><a href="#org27aef35">2.2.3. Access functions</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#org86f525f">3. Radial part</a>
|
||||
<li><a href="#org5ac2cd3">3. Radial part</a>
|
||||
<ul>
|
||||
<li><a href="#orgd3654b5">3.1. General functions for Gaussian basis functions</a></li>
|
||||
<li><a href="#org1ee351e">3.2. Computation of primitives</a></li>
|
||||
<li><a href="#orgf9141aa">3.3. Computation of shells</a></li>
|
||||
<li><a href="#orged4ef40">3.1. General functions for Gaussian basis functions</a></li>
|
||||
<li><a href="#org90bd06e">3.2. Computation of primitives</a></li>
|
||||
<li><a href="#org5cca535">3.3. Computation of shells</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#org4c2fcae">4. Polynomial part</a>
|
||||
<li><a href="#orgf1e9e05">4. Polynomial part</a>
|
||||
<ul>
|
||||
<li><a href="#org653f4fb">4.1. General functions for Powers of \(x-X_i\)</a></li>
|
||||
<li><a href="#org7748838">4.2. General functions for Value, Gradient and Laplacian of a polynomial</a></li>
|
||||
<li><a href="#orgf4729ac">4.1. General functions for Powers of \(x-X_i\)</a></li>
|
||||
<li><a href="#orgda0d7cc">4.2. General functions for Value, Gradient and Laplacian of a polynomial</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#orgeefe35b">5. Combining radial and polynomial parts</a>
|
||||
<li><a href="#orgd092ed5">5. Combining radial and polynomial parts</a>
|
||||
<ul>
|
||||
<li><a href="#orga296305">5.1. Determination of nucleus ranges</a></li>
|
||||
<li><a href="#org087bfef">5.2. Values only</a>
|
||||
<li><a href="#org4a45611">5.1. Determination of nucleus ranges</a></li>
|
||||
<li><a href="#org8780723">5.2. Values only</a>
|
||||
<ul>
|
||||
<li><a href="#orgaa9bd85">5.2.1. Unoptimized version</a></li>
|
||||
<li><a href="#orge53320b">5.2.2. HPC version</a></li>
|
||||
<li><a href="#org5efd7df">5.2.3. Interfaces</a></li>
|
||||
<li><a href="#org8b71c14">5.2.1. Unoptimized version</a></li>
|
||||
<li><a href="#orgda79a14">5.2.2. HPC version</a></li>
|
||||
<li><a href="#org0128715">5.2.3. Interfaces</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#orgc13a4d7">5.3. Value, gradients, Laplacian</a>
|
||||
<li><a href="#orgd9a3352">5.3. Value, gradients, Laplacian</a>
|
||||
<ul>
|
||||
<li><a href="#org387944f">5.3.1. Reference version</a></li>
|
||||
<li><a href="#org7b3ef53">5.3.2. HPC version</a></li>
|
||||
<li><a href="#org8fcd4a0">5.3.3. Interfaces</a></li>
|
||||
<li><a href="#org5dae94d">5.3.1. Reference version</a></li>
|
||||
<li><a href="#org4d0ff87">5.3.2. HPC version</a></li>
|
||||
<li><a href="#org6b102ef">5.3.3. Interfaces</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
@ -410,8 +410,8 @@ for the JavaScript code in this tag.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org7419d37" class="outline-2">
|
||||
<h2 id="org7419d37"><span class="section-number-2">1</span> Introduction</h2>
|
||||
<div id="outline-container-orgc444a78" class="outline-2">
|
||||
<h2 id="orgc444a78"><span class="section-number-2">1</span> Introduction</h2>
|
||||
<div class="outline-text-2" id="text-1">
|
||||
<p>
|
||||
The atomic basis set is defined as a list of shells. Each shell \(s\) is
|
||||
@ -464,19 +464,19 @@ gradients and Laplacian of the atomic basis functions.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgb42b5a6" class="outline-2">
|
||||
<h2 id="orgb42b5a6"><span class="section-number-2">2</span> Context</h2>
|
||||
<div id="outline-container-org693c580" class="outline-2">
|
||||
<h2 id="org693c580"><span class="section-number-2">2</span> Context</h2>
|
||||
<div class="outline-text-2" id="text-2">
|
||||
</div>
|
||||
<div id="outline-container-org119573c" class="outline-3">
|
||||
<h3 id="org119573c"><span class="section-number-3">2.1</span> Constant data</h3>
|
||||
<div id="outline-container-org85c813c" class="outline-3">
|
||||
<h3 id="org85c813c"><span class="section-number-3">2.1</span> Constant data</h3>
|
||||
<div class="outline-text-3" id="text-2-1">
|
||||
<p>
|
||||
The following arrays are stored in the context, and need to be set
|
||||
when initializing the library:
|
||||
</p>
|
||||
|
||||
<table id="org8717b96" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="org2ec92c6" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -710,7 +710,7 @@ calling the functions:
|
||||
</p>
|
||||
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-C" id="org2d612a9"><span style="color: #228b22;">qmckl_exit_code</span> <span style="color: #0000ff;">qmckl_set_ao_basis_$V$</span> ( <span style="color: #228b22;">qmckl_context</span> <span style="color: #a0522d;">context</span>,
|
||||
<pre class="src src-C" id="org2b1f3d6"><span style="color: #228b22;">qmckl_exit_code</span> <span style="color: #0000ff;">qmckl_set_ao_basis_$V$</span> ( <span style="color: #228b22;">qmckl_context</span> <span style="color: #a0522d;">context</span>,
|
||||
<span style="color: #a020f0;">const</span> $type_of_V$ $V$);
|
||||
|
||||
<span style="color: #228b22;">qmckl_exit_code</span> <span style="color: #0000ff;">qmckl_get_ao_basis_$V$</span> ( <span style="color: #a020f0;">const</span> <span style="color: #228b22;">qmckl_context</span> <span style="color: #a0522d;">context</span>,
|
||||
@ -747,7 +747,7 @@ For array variables, use the rule:
|
||||
</p>
|
||||
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-C" id="org571a27b"><span style="color: #228b22;">qmckl_exit_code</span> <span style="color: #0000ff;">qmckl_set_ao_basis_$V$</span> ( <span style="color: #228b22;">qmckl_context</span> <span style="color: #a0522d;">context</span>,
|
||||
<pre class="src src-C" id="orgfa176ec"><span style="color: #228b22;">qmckl_exit_code</span> <span style="color: #0000ff;">qmckl_set_ao_basis_$V$</span> ( <span style="color: #228b22;">qmckl_context</span> <span style="color: #a0522d;">context</span>,
|
||||
<span style="color: #a020f0;">const</span> $type_of_V$ $V$,
|
||||
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">int64_t</span> <span style="color: #a0522d;">size_max</span>);
|
||||
|
||||
@ -785,17 +785,17 @@ For array variables, use the rule:
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orga1630fc" class="outline-4">
|
||||
<h4 id="orga1630fc"><span class="section-number-4">2.1.1</span> Initialization functions</h4>
|
||||
<div id="outline-container-org73548f8" class="outline-4">
|
||||
<h4 id="org73548f8"><span class="section-number-4">2.1.1</span> Initialization functions</h4>
|
||||
<div class="outline-text-4" id="text-2-1-1">
|
||||
<p>
|
||||
<code>size_max</code> is the dimension of the input array, which should be
|
||||
equal of larger than the value given in the table of section <a href="#orgb42b5a6">2</a>.
|
||||
equal of larger than the value given in the table of section <a href="#org693c580">2</a>.
|
||||
</p>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org300bfba" class="outline-5">
|
||||
<h5 id="org300bfba"><span class="section-number-5">2.1.1.1</span> C interface</h5>
|
||||
<div id="outline-container-org9211578" class="outline-5">
|
||||
<h5 id="org9211578"><span class="section-number-5">2.1.1.1</span> C interface</h5>
|
||||
<div class="outline-text-5" id="text-2-1-1-1">
|
||||
<p>
|
||||
To set the basis set, all the following functions need to be
|
||||
@ -919,8 +919,8 @@ called.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org6306b00" class="outline-5">
|
||||
<h5 id="org6306b00"><span class="section-number-5">2.1.1.2</span> Fortran interface</h5>
|
||||
<div id="outline-container-org62dce6f" class="outline-5">
|
||||
<h5 id="org62dce6f"><span class="section-number-5">2.1.1.2</span> Fortran interface</h5>
|
||||
<div class="outline-text-5" id="text-2-1-1-2">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-f90"><span style="color: #a020f0;">interface</span>
|
||||
@ -1103,17 +1103,17 @@ called.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgb5849a4" class="outline-4">
|
||||
<h4 id="orgb5849a4"><span class="section-number-4">2.1.2</span> Access functions</h4>
|
||||
<div id="outline-container-org0de0336" class="outline-4">
|
||||
<h4 id="org0de0336"><span class="section-number-4">2.1.2</span> Access functions</h4>
|
||||
<div class="outline-text-4" id="text-2-1-2">
|
||||
<p>
|
||||
<code>size_max</code> is the dimension of the input array, which should be
|
||||
equal of larger than the value given in the table of section <a href="#orgb42b5a6">2</a>.
|
||||
equal of larger than the value given in the table of section <a href="#org693c580">2</a>.
|
||||
</p>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgd086733" class="outline-5">
|
||||
<h5 id="orgd086733"><span class="section-number-5">2.1.2.1</span> C interface</h5>
|
||||
<div id="outline-container-orgfb100c7" class="outline-5">
|
||||
<h5 id="orgfb100c7"><span class="section-number-5">2.1.2.1</span> C interface</h5>
|
||||
<div class="outline-text-5" id="text-2-1-2-1">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">qmckl_exit_code</span>
|
||||
@ -1235,8 +1235,8 @@ function returns <code>true</code>.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org3b4f13d" class="outline-5">
|
||||
<h5 id="org3b4f13d"><span class="section-number-5">2.1.2.2</span> Fortran interface</h5>
|
||||
<div id="outline-container-orgf500818" class="outline-5">
|
||||
<h5 id="orgf500818"><span class="section-number-5">2.1.2.2</span> Fortran interface</h5>
|
||||
<div class="outline-text-5" id="text-2-1-2-2">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-f90"><span style="color: #a020f0;">interface</span>
|
||||
@ -1420,8 +1420,8 @@ function returns <code>true</code>.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org351c031" class="outline-3">
|
||||
<h3 id="org351c031"><span class="section-number-3">2.2</span> Computed data</h3>
|
||||
<div id="outline-container-orgd36d890" class="outline-3">
|
||||
<h3 id="orgd36d890"><span class="section-number-3">2.2</span> Computed data</h3>
|
||||
<div class="outline-text-3" id="text-2-2">
|
||||
<p>
|
||||
The following data is computed as described in the next sections:
|
||||
@ -1496,8 +1496,8 @@ The following data is computed as described in the next sections:
|
||||
</table>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org5c3128f" class="outline-4">
|
||||
<h4 id="org5c3128f"><span class="section-number-4">2.2.1</span> After initialization</h4>
|
||||
<div id="outline-container-orgd5badd0" class="outline-4">
|
||||
<h4 id="orgd5badd0"><span class="section-number-4">2.2.1</span> After initialization</h4>
|
||||
<div class="outline-text-4" id="text-2-2-1">
|
||||
<p>
|
||||
When the basis set is completely entered, extra data structures may be
|
||||
@ -1511,8 +1511,8 @@ the context.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgea228ea" class="outline-4">
|
||||
<h4 id="orgea228ea"><span class="section-number-4">2.2.2</span> <span class="todo TODO">TODO</span> HPC-specific data structures</h4>
|
||||
<div id="outline-container-org538b7b6" class="outline-4">
|
||||
<h4 id="org538b7b6"><span class="section-number-4">2.2.2</span> <span class="todo TODO">TODO</span> HPC-specific data structures</h4>
|
||||
<div class="outline-text-4" id="text-2-2-2">
|
||||
<p>
|
||||
For faster access, we provide extra arrays for the shell information as:
|
||||
@ -1542,8 +1542,8 @@ which is a matrix-vector product.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgb42402c" class="outline-4">
|
||||
<h4 id="orgb42402c"><span class="section-number-4">2.2.3</span> Access functions</h4>
|
||||
<div id="outline-container-org27aef35" class="outline-4">
|
||||
<h4 id="org27aef35"><span class="section-number-4">2.2.3</span> Access functions</h4>
|
||||
<div class="outline-text-4" id="text-2-2-3">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">qmckl_exit_code</span>
|
||||
@ -1556,7 +1556,7 @@ which is a matrix-vector product.
|
||||
<p>
|
||||
Returns the array of values, gradients an Laplacian of primitive
|
||||
basis functions evaluated at the current coordinates.
|
||||
See section <a href="#org1ee351e">3.2</a>.
|
||||
See section <a href="#org90bd06e">3.2</a>.
|
||||
</p>
|
||||
|
||||
<div class="org-src-container">
|
||||
@ -1569,7 +1569,7 @@ See section <a href="#org1ee351e">3.2</a>.
|
||||
|
||||
<p>
|
||||
Returns the array of values, gradients an Laplacian of contracted shells
|
||||
evaluated at the current coordinates. See section <a href="#orgf9141aa">3.3</a>.
|
||||
evaluated at the current coordinates. See section <a href="#org5cca535">3.3</a>.
|
||||
</p>
|
||||
|
||||
<div class="org-src-container">
|
||||
@ -1583,7 +1583,7 @@ evaluated at the current coordinates. See section <a href="#orgf9141aa">3.3</a>.
|
||||
<p>
|
||||
Returns the array of values, gradients an Laplacian of the atomic orbitals
|
||||
evaluated at the current coordinates.
|
||||
See section <a href="#orgeefe35b">5</a>.
|
||||
See section <a href="#orgd092ed5">5</a>.
|
||||
</p>
|
||||
|
||||
<p>
|
||||
@ -1608,7 +1608,7 @@ Uses the given array to compute the VGL.
|
||||
|
||||
<p>
|
||||
Returns the array of values of the atomic orbitals evaluated at
|
||||
the current coordinates. See section <a href="#orgeefe35b">5</a>.
|
||||
the current coordinates. See section <a href="#orgd092ed5">5</a>.
|
||||
</p>
|
||||
|
||||
<p>
|
||||
@ -1627,12 +1627,12 @@ Uses the given array to compute the value.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org86f525f" class="outline-2">
|
||||
<h2 id="org86f525f"><span class="section-number-2">3</span> Radial part</h2>
|
||||
<div id="outline-container-org5ac2cd3" class="outline-2">
|
||||
<h2 id="org5ac2cd3"><span class="section-number-2">3</span> Radial part</h2>
|
||||
<div class="outline-text-2" id="text-3">
|
||||
</div>
|
||||
<div id="outline-container-orgd3654b5" class="outline-3">
|
||||
<h3 id="orgd3654b5"><span class="section-number-3">3.1</span> General functions for Gaussian basis functions</h3>
|
||||
<div id="outline-container-orged4ef40" class="outline-3">
|
||||
<h3 id="orged4ef40"><span class="section-number-3">3.1</span> General functions for Gaussian basis functions</h3>
|
||||
<div class="outline-text-3" id="text-3-1">
|
||||
<p>
|
||||
<code>qmckl_ao_gaussian_vgl</code> computes the values, gradients and
|
||||
@ -1805,10 +1805,10 @@ Requirements:
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org1ee351e" class="outline-3">
|
||||
<h3 id="org1ee351e"><span class="section-number-3">3.2</span> Computation of primitives</h3>
|
||||
<div id="outline-container-org90bd06e" class="outline-3">
|
||||
<h3 id="org90bd06e"><span class="section-number-3">3.2</span> Computation of primitives</h3>
|
||||
<div class="outline-text-3" id="text-3-2">
|
||||
<table id="orgd63977c" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="org62b191f" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -1969,10 +1969,10 @@ Requirements:
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgf9141aa" class="outline-3">
|
||||
<h3 id="orgf9141aa"><span class="section-number-3">3.3</span> Computation of shells</h3>
|
||||
<div id="outline-container-org5cca535" class="outline-3">
|
||||
<h3 id="org5cca535"><span class="section-number-3">3.3</span> Computation of shells</h3>
|
||||
<div class="outline-text-3" id="text-3-3">
|
||||
<table id="org87fd609" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="org4dc9c24" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -2228,8 +2228,8 @@ Requirements:
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org4c2fcae" class="outline-2">
|
||||
<h2 id="org4c2fcae"><span class="section-number-2">4</span> Polynomial part</h2>
|
||||
<div id="outline-container-orgf1e9e05" class="outline-2">
|
||||
<h2 id="orgf1e9e05"><span class="section-number-2">4</span> Polynomial part</h2>
|
||||
<div class="outline-text-2" id="text-4">
|
||||
<p>
|
||||
Going from the atomic basis set to AOs implies a systematic
|
||||
@ -2249,8 +2249,8 @@ f & : & f_{xxx}, f_{xxy}, f_{xxz}, f_{xyy}, f_{xyz}, f_{xzz}, f_{yyy}, f_{yyz},
|
||||
\end{eqnarray}
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org653f4fb" class="outline-3">
|
||||
<h3 id="org653f4fb"><span class="section-number-3">4.1</span> General functions for Powers of \(x-X_i\)</h3>
|
||||
<div id="outline-container-orgf4729ac" class="outline-3">
|
||||
<h3 id="orgf4729ac"><span class="section-number-3">4.1</span> General functions for Powers of \(x-X_i\)</h3>
|
||||
<div class="outline-text-3" id="text-4-1">
|
||||
<p>
|
||||
The <code>qmckl_ao_power</code> function computes all the powers of the <code>n</code>
|
||||
@ -2262,7 +2262,7 @@ the \(n\) points:
|
||||
\[ P_{ik} = X_i^k \]
|
||||
</p>
|
||||
|
||||
<table id="org98eaa43" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="orga1a414f" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -2403,8 +2403,8 @@ Requirements:
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org7748838" class="outline-3">
|
||||
<h3 id="org7748838"><span class="section-number-3">4.2</span> General functions for Value, Gradient and Laplacian of a polynomial</h3>
|
||||
<div id="outline-container-orgda0d7cc" class="outline-3">
|
||||
<h3 id="orgda0d7cc"><span class="section-number-3">4.2</span> General functions for Value, Gradient and Laplacian of a polynomial</h3>
|
||||
<div class="outline-text-3" id="text-4-2">
|
||||
<p>
|
||||
A polynomial is centered on a nucleus \(\mathbf{R}_i\)
|
||||
@ -2449,7 +2449,7 @@ Laplacians at a given point in space, of all polynomials with an
|
||||
angular momentum up to <code>lmax</code>.
|
||||
</p>
|
||||
|
||||
<table id="org4f61ffc" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="org483acfd" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -3245,12 +3245,12 @@ For example, with a=0, b=2 and c=1 the string is "yyz"</li>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgeefe35b" class="outline-2">
|
||||
<h2 id="orgeefe35b"><span class="section-number-2">5</span> Combining radial and polynomial parts</h2>
|
||||
<div id="outline-container-orgd092ed5" class="outline-2">
|
||||
<h2 id="orgd092ed5"><span class="section-number-2">5</span> Combining radial and polynomial parts</h2>
|
||||
<div class="outline-text-2" id="text-5">
|
||||
</div>
|
||||
<div id="outline-container-orga296305" class="outline-3">
|
||||
<h3 id="orga296305"><span class="section-number-3">5.1</span> Determination of nucleus ranges</h3>
|
||||
<div id="outline-container-org4a45611" class="outline-3">
|
||||
<h3 id="org4a45611"><span class="section-number-3">5.1</span> Determination of nucleus ranges</h3>
|
||||
<div class="outline-text-3" id="text-5-1">
|
||||
<p>
|
||||
The range of a nucleus is defined as the distance beyond which all
|
||||
@ -3416,14 +3416,14 @@ of bits of precision (1-53), a range is given.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org087bfef" class="outline-3">
|
||||
<h3 id="org087bfef"><span class="section-number-3">5.2</span> Values only</h3>
|
||||
<div id="outline-container-org8780723" class="outline-3">
|
||||
<h3 id="org8780723"><span class="section-number-3">5.2</span> Values only</h3>
|
||||
<div class="outline-text-3" id="text-5-2">
|
||||
</div>
|
||||
<div id="outline-container-orgaa9bd85" class="outline-4">
|
||||
<h4 id="orgaa9bd85"><span class="section-number-4">5.2.1</span> Unoptimized version</h4>
|
||||
<div id="outline-container-org8b71c14" class="outline-4">
|
||||
<h4 id="org8b71c14"><span class="section-number-4">5.2.1</span> Unoptimized version</h4>
|
||||
<div class="outline-text-4" id="text-5-2-1">
|
||||
<table id="org905b459" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="org66cb7e1" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -3663,10 +3663,10 @@ of bits of precision (1-53), a range is given.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orge53320b" class="outline-4">
|
||||
<h4 id="orge53320b"><span class="section-number-4">5.2.2</span> HPC version</h4>
|
||||
<div id="outline-container-orgda79a14" class="outline-4">
|
||||
<h4 id="orgda79a14"><span class="section-number-4">5.2.2</span> HPC version</h4>
|
||||
<div class="outline-text-4" id="text-5-2-2">
|
||||
<table id="org81e98ca" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="org69a306d" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -3824,8 +3824,8 @@ of bits of precision (1-53), a range is given.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org5efd7df" class="outline-4">
|
||||
<h4 id="org5efd7df"><span class="section-number-4">5.2.3</span> Interfaces</h4>
|
||||
<div id="outline-container-org0128715" class="outline-4">
|
||||
<h4 id="org0128715"><span class="section-number-4">5.2.3</span> Interfaces</h4>
|
||||
<div class="outline-text-4" id="text-5-2-3">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">qmckl_exit_code</span> <span style="color: #0000ff;">qmckl_compute_ao_value_doc</span> (
|
||||
@ -3874,14 +3874,14 @@ of bits of precision (1-53), a range is given.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgc13a4d7" class="outline-3">
|
||||
<h3 id="orgc13a4d7"><span class="section-number-3">5.3</span> Value, gradients, Laplacian</h3>
|
||||
<div id="outline-container-orgd9a3352" class="outline-3">
|
||||
<h3 id="orgd9a3352"><span class="section-number-3">5.3</span> Value, gradients, Laplacian</h3>
|
||||
<div class="outline-text-3" id="text-5-3">
|
||||
</div>
|
||||
<div id="outline-container-org387944f" class="outline-4">
|
||||
<h4 id="org387944f"><span class="section-number-4">5.3.1</span> Reference version</h4>
|
||||
<div id="outline-container-org5dae94d" class="outline-4">
|
||||
<h4 id="org5dae94d"><span class="section-number-4">5.3.1</span> Reference version</h4>
|
||||
<div class="outline-text-4" id="text-5-3-1">
|
||||
<table id="orgcdd013c" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="org94da5b4" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -4149,10 +4149,10 @@ of bits of precision (1-53), a range is given.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org7b3ef53" class="outline-4">
|
||||
<h4 id="org7b3ef53"><span class="section-number-4">5.3.2</span> HPC version</h4>
|
||||
<div id="outline-container-org4d0ff87" class="outline-4">
|
||||
<h4 id="org4d0ff87"><span class="section-number-4">5.3.2</span> HPC version</h4>
|
||||
<div class="outline-text-4" id="text-5-3-2">
|
||||
<table id="orgcd6a1cd" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="org6f7e9e5" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -4311,8 +4311,8 @@ of bits of precision (1-53), a range is given.
|
||||
</div>
|
||||
|
||||
|
||||
<div id="outline-container-org8fcd4a0" class="outline-4">
|
||||
<h4 id="org8fcd4a0"><span class="section-number-4">5.3.3</span> Interfaces</h4>
|
||||
<div id="outline-container-org6b102ef" class="outline-4">
|
||||
<h4 id="org6b102ef"><span class="section-number-4">5.3.3</span> Interfaces</h4>
|
||||
<div class="outline-text-4" id="text-5-3-3">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">qmckl_exit_code</span> <span style="color: #0000ff;">qmckl_compute_ao_vgl_doc</span> (
|
||||
@ -4364,7 +4364,7 @@ of bits of precision (1-53), a range is given.
|
||||
</div>
|
||||
<div id="postamble" class="status">
|
||||
<p class="author">Author: TREX CoE</p>
|
||||
<p class="date">Created: 2024-12-13 Fri 15:09</p>
|
||||
<p class="date">Created: 2024-12-13 Fri 15:45</p>
|
||||
<p class="validation"><a href="http://validator.w3.org/check?uri=referer">Validate</a></p>
|
||||
</div>
|
||||
</body>
|
||||
|
||||
184
qmckl_blas.html
184
qmckl_blas.html
@ -3,7 +3,7 @@
|
||||
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
|
||||
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
|
||||
<head>
|
||||
<!-- 2024-12-13 Fri 15:09 -->
|
||||
<!-- 2024-12-13 Fri 15:45 -->
|
||||
<meta http-equiv="Content-Type" content="text/html;charset=utf-8" />
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1" />
|
||||
<title>BLAS functions</title>
|
||||
@ -346,56 +346,56 @@ for the JavaScript code in this tag.
|
||||
<h2>Table of Contents</h2>
|
||||
<div id="text-table-of-contents">
|
||||
<ul>
|
||||
<li><a href="#org9d7aca1">-</a></li>
|
||||
<li><a href="#org3689096">1. Data types</a>
|
||||
<li><a href="#org86f20cc">-</a></li>
|
||||
<li><a href="#orgf5779c2">1. Data types</a>
|
||||
<ul>
|
||||
<li><a href="#orgbc75bdd">1.1. Vector</a></li>
|
||||
<li><a href="#org29e91af">1.2. Matrix</a></li>
|
||||
<li><a href="#orga0901fc">1.3. Tensor</a></li>
|
||||
<li><a href="#orgee55fdd">1.4. Reshaping</a>
|
||||
<li><a href="#org130e298">1.1. Vector</a></li>
|
||||
<li><a href="#org78c2d6b">1.2. Matrix</a></li>
|
||||
<li><a href="#orgcdb6a06">1.3. Tensor</a></li>
|
||||
<li><a href="#org417ae4c">1.4. Reshaping</a>
|
||||
<ul>
|
||||
<li><a href="#orgfb28424">1.4.1. Vector -> Matrix</a></li>
|
||||
<li><a href="#org141a8c3">1.4.2. Vector -> Tensor</a></li>
|
||||
<li><a href="#org6163a2f">1.4.3. Matrix -> Vector</a></li>
|
||||
<li><a href="#orgc6f27ec">1.4.4. Matrix -> Tensor</a></li>
|
||||
<li><a href="#org4e0aad0">1.4.5. Tensor -> Vector</a></li>
|
||||
<li><a href="#orgc68def3">1.4.6. Tensor -> Matrix</a></li>
|
||||
<li><a href="#org30c1110">1.4.1. Vector -> Matrix</a></li>
|
||||
<li><a href="#orgb5b4b75">1.4.2. Vector -> Tensor</a></li>
|
||||
<li><a href="#org4817c05">1.4.3. Matrix -> Vector</a></li>
|
||||
<li><a href="#orgb004492">1.4.4. Matrix -> Tensor</a></li>
|
||||
<li><a href="#org67aee3a">1.4.5. Tensor -> Vector</a></li>
|
||||
<li><a href="#org128dd92">1.4.6. Tensor -> Matrix</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#orga275f71">1.5. Access macros</a></li>
|
||||
<li><a href="#orgc660871">1.6. Set all elements</a>
|
||||
<li><a href="#org338b819">1.5. Access macros</a></li>
|
||||
<li><a href="#org767a243">1.6. Set all elements</a>
|
||||
<ul>
|
||||
<li><a href="#orgbaccb05">1.6.1. Vector</a></li>
|
||||
<li><a href="#org8fb8bdd">1.6.2. Matrix</a></li>
|
||||
<li><a href="#orgab89173">1.6.3. Tensor</a></li>
|
||||
<li><a href="#org2fb2b1c">1.6.1. Vector</a></li>
|
||||
<li><a href="#orgc2a2cf1">1.6.2. Matrix</a></li>
|
||||
<li><a href="#orgf4e5017">1.6.3. Tensor</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#org310f497">1.7. Copy to/from to <code>double*</code></a></li>
|
||||
<li><a href="#org3225c9f">1.8. Allocate and copy to <code>double*</code></a></li>
|
||||
<li><a href="#org5ac6ae7">1.7. Copy to/from to <code>double*</code></a></li>
|
||||
<li><a href="#org45007c2">1.8. Allocate and copy to <code>double*</code></a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#orga6d286c">2. Matrix operations</a>
|
||||
<li><a href="#org31a5c13">2. Matrix operations</a>
|
||||
<ul>
|
||||
<li><a href="#orgb2e56bd">2.1. <code>qmckl_dgemm</code></a></li>
|
||||
<li><a href="#org9106e4d">2.2. <code>qmckl_dgemm_safe</code></a></li>
|
||||
<li><a href="#org12f5590">2.3. <code>qmckl_matmul</code></a></li>
|
||||
<li><a href="#orgdbc6481">2.4. <code>qmckl_adjugate</code></a></li>
|
||||
<li><a href="#org7c22a04">2.5. <code>qmckl_adjugate_safe</code></a>
|
||||
<li><a href="#orge88d115">2.1. <code>qmckl_dgemm</code></a></li>
|
||||
<li><a href="#org74d36b2">2.2. <code>qmckl_dgemm_safe</code></a></li>
|
||||
<li><a href="#org645d95c">2.3. <code>qmckl_matmul</code></a></li>
|
||||
<li><a href="#orga572b30">2.4. <code>qmckl_adjugate</code></a></li>
|
||||
<li><a href="#org9d4544d">2.5. <code>qmckl_adjugate_safe</code></a>
|
||||
<ul>
|
||||
<li><a href="#org20c93e7">2.5.1. C interface</a></li>
|
||||
<li><a href="#org0eb74a1">2.5.1. C interface</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#org440805a">2.6. <code>qmckl_transpose</code></a></li>
|
||||
<li><a href="#org97b38d1">2.6. <code>qmckl_transpose</code></a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#orgf572071">3. Utilities</a></li>
|
||||
<li><a href="#org5017e6e">3. Utilities</a></li>
|
||||
</ul>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org9d7aca1" class="outline-2">
|
||||
<h2 id="org9d7aca1">-</h2>
|
||||
<div class="outline-text-2" id="text-org9d7aca1">
|
||||
<div id="outline-container-org86f20cc" class="outline-2">
|
||||
<h2 id="org86f20cc">-</h2>
|
||||
<div class="outline-text-2" id="text-org86f20cc">
|
||||
<p>
|
||||
Basic linear algebra data types and operations are described in this file.
|
||||
The data types are private, so that HPC implementations can use
|
||||
@ -409,12 +409,12 @@ are not intended to be passed to external codes.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org3689096" class="outline-2">
|
||||
<h2 id="org3689096"><span class="section-number-2">1</span> Data types</h2>
|
||||
<div id="outline-container-orgf5779c2" class="outline-2">
|
||||
<h2 id="orgf5779c2"><span class="section-number-2">1</span> Data types</h2>
|
||||
<div class="outline-text-2" id="text-1">
|
||||
</div>
|
||||
<div id="outline-container-orgbc75bdd" class="outline-3">
|
||||
<h3 id="orgbc75bdd"><span class="section-number-3">1.1</span> Vector</h3>
|
||||
<div id="outline-container-org130e298" class="outline-3">
|
||||
<h3 id="org130e298"><span class="section-number-3">1.1</span> Vector</h3>
|
||||
<div class="outline-text-3" id="text-1-1">
|
||||
<table border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
@ -468,8 +468,8 @@ Allocates a new vector. If the allocation failed the size is zero.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org29e91af" class="outline-3">
|
||||
<h3 id="org29e91af"><span class="section-number-3">1.2</span> Matrix</h3>
|
||||
<div id="outline-container-org78c2d6b" class="outline-3">
|
||||
<h3 id="org78c2d6b"><span class="section-number-3">1.2</span> Matrix</h3>
|
||||
<div class="outline-text-3" id="text-1-2">
|
||||
<table border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
@ -529,8 +529,8 @@ Allocates a new matrix. If the allocation failed the sizes are zero.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orga0901fc" class="outline-3">
|
||||
<h3 id="orga0901fc"><span class="section-number-3">1.3</span> Tensor</h3>
|
||||
<div id="outline-container-orgcdb6a06" class="outline-3">
|
||||
<h3 id="orgcdb6a06"><span class="section-number-3">1.3</span> Tensor</h3>
|
||||
<div class="outline-text-3" id="text-1-3">
|
||||
<table border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
@ -597,16 +597,16 @@ is zero.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgee55fdd" class="outline-3">
|
||||
<h3 id="orgee55fdd"><span class="section-number-3">1.4</span> Reshaping</h3>
|
||||
<div id="outline-container-org417ae4c" class="outline-3">
|
||||
<h3 id="org417ae4c"><span class="section-number-3">1.4</span> Reshaping</h3>
|
||||
<div class="outline-text-3" id="text-1-4">
|
||||
<p>
|
||||
Reshaping occurs in-place and the pointer to the data is copied.
|
||||
</p>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgfb28424" class="outline-4">
|
||||
<h4 id="orgfb28424"><span class="section-number-4">1.4.1</span> Vector -> Matrix</h4>
|
||||
<div id="outline-container-org30c1110" class="outline-4">
|
||||
<h4 id="org30c1110"><span class="section-number-4">1.4.1</span> Vector -> Matrix</h4>
|
||||
<div class="outline-text-4" id="text-1-4-1">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">qmckl_matrix</span>
|
||||
@ -622,8 +622,8 @@ Reshapes a vector into a matrix.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org141a8c3" class="outline-4">
|
||||
<h4 id="org141a8c3"><span class="section-number-4">1.4.2</span> Vector -> Tensor</h4>
|
||||
<div id="outline-container-orgb5b4b75" class="outline-4">
|
||||
<h4 id="orgb5b4b75"><span class="section-number-4">1.4.2</span> Vector -> Tensor</h4>
|
||||
<div class="outline-text-4" id="text-1-4-2">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">qmckl_tensor</span>
|
||||
@ -639,8 +639,8 @@ Reshapes a vector into a tensor.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org6163a2f" class="outline-4">
|
||||
<h4 id="org6163a2f"><span class="section-number-4">1.4.3</span> Matrix -> Vector</h4>
|
||||
<div id="outline-container-org4817c05" class="outline-4">
|
||||
<h4 id="org4817c05"><span class="section-number-4">1.4.3</span> Matrix -> Vector</h4>
|
||||
<div class="outline-text-4" id="text-1-4-3">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">qmckl_vector</span>
|
||||
@ -654,8 +654,8 @@ Reshapes a matrix into a vector.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgc6f27ec" class="outline-4">
|
||||
<h4 id="orgc6f27ec"><span class="section-number-4">1.4.4</span> Matrix -> Tensor</h4>
|
||||
<div id="outline-container-orgb004492" class="outline-4">
|
||||
<h4 id="orgb004492"><span class="section-number-4">1.4.4</span> Matrix -> Tensor</h4>
|
||||
<div class="outline-text-4" id="text-1-4-4">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">qmckl_tensor</span>
|
||||
@ -671,8 +671,8 @@ Reshapes a matrix into a tensor.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org4e0aad0" class="outline-4">
|
||||
<h4 id="org4e0aad0"><span class="section-number-4">1.4.5</span> Tensor -> Vector</h4>
|
||||
<div id="outline-container-org67aee3a" class="outline-4">
|
||||
<h4 id="org67aee3a"><span class="section-number-4">1.4.5</span> Tensor -> Vector</h4>
|
||||
<div class="outline-text-4" id="text-1-4-5">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">qmckl_vector</span>
|
||||
@ -686,8 +686,8 @@ Reshapes a tensor into a vector.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgc68def3" class="outline-4">
|
||||
<h4 id="orgc68def3"><span class="section-number-4">1.4.6</span> Tensor -> Matrix</h4>
|
||||
<div id="outline-container-org128dd92" class="outline-4">
|
||||
<h4 id="org128dd92"><span class="section-number-4">1.4.6</span> Tensor -> Matrix</h4>
|
||||
<div class="outline-text-4" id="text-1-4-6">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">qmckl_matrix</span>
|
||||
@ -704,8 +704,8 @@ Reshapes a tensor into a vector.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orga275f71" class="outline-3">
|
||||
<h3 id="orga275f71"><span class="section-number-3">1.5</span> Access macros</h3>
|
||||
<div id="outline-container-org338b819" class="outline-3">
|
||||
<h3 id="org338b819"><span class="section-number-3">1.5</span> Access macros</h3>
|
||||
<div class="outline-text-3" id="text-1-5">
|
||||
<p>
|
||||
Macros are provided to ease the access to vectors, matrices and
|
||||
@ -730,12 +730,12 @@ For example:
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgc660871" class="outline-3">
|
||||
<h3 id="orgc660871"><span class="section-number-3">1.6</span> Set all elements</h3>
|
||||
<div id="outline-container-org767a243" class="outline-3">
|
||||
<h3 id="org767a243"><span class="section-number-3">1.6</span> Set all elements</h3>
|
||||
<div class="outline-text-3" id="text-1-6">
|
||||
</div>
|
||||
<div id="outline-container-orgbaccb05" class="outline-4">
|
||||
<h4 id="orgbaccb05"><span class="section-number-4">1.6.1</span> Vector</h4>
|
||||
<div id="outline-container-org2fb2b1c" class="outline-4">
|
||||
<h4 id="org2fb2b1c"><span class="section-number-4">1.6.1</span> Vector</h4>
|
||||
<div class="outline-text-4" id="text-1-6-1">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">qmckl_vector</span>
|
||||
@ -745,8 +745,8 @@ For example:
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org8fb8bdd" class="outline-4">
|
||||
<h4 id="org8fb8bdd"><span class="section-number-4">1.6.2</span> Matrix</h4>
|
||||
<div id="outline-container-orgc2a2cf1" class="outline-4">
|
||||
<h4 id="orgc2a2cf1"><span class="section-number-4">1.6.2</span> Matrix</h4>
|
||||
<div class="outline-text-4" id="text-1-6-2">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">qmckl_matrix</span>
|
||||
@ -756,8 +756,8 @@ For example:
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgab89173" class="outline-4">
|
||||
<h4 id="orgab89173"><span class="section-number-4">1.6.3</span> Tensor</h4>
|
||||
<div id="outline-container-orgf4e5017" class="outline-4">
|
||||
<h4 id="orgf4e5017"><span class="section-number-4">1.6.3</span> Tensor</h4>
|
||||
<div class="outline-text-4" id="text-1-6-3">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">qmckl_tensor</span>
|
||||
@ -768,8 +768,8 @@ For example:
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org310f497" class="outline-3">
|
||||
<h3 id="org310f497"><span class="section-number-3">1.7</span> Copy to/from to <code>double*</code></h3>
|
||||
<div id="outline-container-org5ac6ae7" class="outline-3">
|
||||
<h3 id="org5ac6ae7"><span class="section-number-3">1.7</span> Copy to/from to <code>double*</code></h3>
|
||||
<div class="outline-text-3" id="text-1-7">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">qmckl_exit_code</span>
|
||||
@ -851,8 +851,8 @@ Converts a <code>double*</code> to a tensor.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org3225c9f" class="outline-3">
|
||||
<h3 id="org3225c9f"><span class="section-number-3">1.8</span> Allocate and copy to <code>double*</code></h3>
|
||||
<div id="outline-container-org45007c2" class="outline-3">
|
||||
<h3 id="org45007c2"><span class="section-number-3">1.8</span> Allocate and copy to <code>double*</code></h3>
|
||||
<div class="outline-text-3" id="text-1-8">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">double</span>* <span style="color: #0000ff;">qmckl_alloc_double_of_vector</span>(<span style="color: #a020f0;">const</span> <span style="color: #228b22;">qmckl_context</span> <span style="color: #a0522d;">context</span>,
|
||||
@ -876,12 +876,12 @@ Converts a <code>double*</code> to a tensor.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orga6d286c" class="outline-2">
|
||||
<h2 id="orga6d286c"><span class="section-number-2">2</span> Matrix operations</h2>
|
||||
<div id="outline-container-org31a5c13" class="outline-2">
|
||||
<h2 id="org31a5c13"><span class="section-number-2">2</span> Matrix operations</h2>
|
||||
<div class="outline-text-2" id="text-2">
|
||||
</div>
|
||||
<div id="outline-container-orgb2e56bd" class="outline-3">
|
||||
<h3 id="orgb2e56bd"><span class="section-number-3">2.1</span> <code>qmckl_dgemm</code></h3>
|
||||
<div id="outline-container-orge88d115" class="outline-3">
|
||||
<h3 id="orge88d115"><span class="section-number-3">2.1</span> <code>qmckl_dgemm</code></h3>
|
||||
<div class="outline-text-3" id="text-2-1">
|
||||
<p>
|
||||
Matrix multiplication with a BLAS interface:
|
||||
@ -893,7 +893,7 @@ Matrix multiplication with a BLAS interface:
|
||||
\]
|
||||
</p>
|
||||
|
||||
<table id="org6a8c506" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="org7cf8ff8" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -1052,8 +1052,8 @@ Requirements:
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org9106e4d" class="outline-3">
|
||||
<h3 id="org9106e4d"><span class="section-number-3">2.2</span> <code>qmckl_dgemm_safe</code></h3>
|
||||
<div id="outline-container-org74d36b2" class="outline-3">
|
||||
<h3 id="org74d36b2"><span class="section-number-3">2.2</span> <code>qmckl_dgemm_safe</code></h3>
|
||||
<div class="outline-text-3" id="text-2-2">
|
||||
<p>
|
||||
"Size-safe" proxy function with the same functionality as <code>qmckl_dgemm</code>
|
||||
@ -1062,7 +1062,7 @@ are required primarily for the Python API, where compatibility with
|
||||
NumPy arrays implies that sizes of the input and output arrays are provided.
|
||||
</p>
|
||||
|
||||
<table id="org096605c" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="org0be45c4" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -1248,8 +1248,8 @@ Requirements:
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org12f5590" class="outline-3">
|
||||
<h3 id="org12f5590"><span class="section-number-3">2.3</span> <code>qmckl_matmul</code></h3>
|
||||
<div id="outline-container-org645d95c" class="outline-3">
|
||||
<h3 id="org645d95c"><span class="section-number-3">2.3</span> <code>qmckl_matmul</code></h3>
|
||||
<div class="outline-text-3" id="text-2-3">
|
||||
<p>
|
||||
Matrix multiplication using the <code>qmckl_matrix</code> data type:
|
||||
@ -1261,7 +1261,7 @@ Matrix multiplication using the <code>qmckl_matrix</code> data type:
|
||||
\]
|
||||
</p>
|
||||
|
||||
<table id="orgf9bd87f" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="org021b83c" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -1355,8 +1355,8 @@ Matrix multiplication using the <code>qmckl_matrix</code> data type:
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgdbc6481" class="outline-3">
|
||||
<h3 id="orgdbc6481"><span class="section-number-3">2.4</span> <code>qmckl_adjugate</code></h3>
|
||||
<div id="outline-container-orga572b30" class="outline-3">
|
||||
<h3 id="orga572b30"><span class="section-number-3">2.4</span> <code>qmckl_adjugate</code></h3>
|
||||
<div class="outline-text-3" id="text-2-4">
|
||||
<p>
|
||||
Given a matrix \(\mathbf{A}\), the adjugate matrix
|
||||
@ -1374,7 +1374,7 @@ of \(\mathbf{A}\).
|
||||
See also: <a href="https://en.wikipedia.org/wiki/Adjugate_matrix">https://en.wikipedia.org/wiki/Adjugate_matrix</a>
|
||||
</p>
|
||||
|
||||
<table id="orgc1444a4" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="org8c7606f" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -1570,8 +1570,8 @@ determinant with the inverse:
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org7c22a04" class="outline-3">
|
||||
<h3 id="org7c22a04"><span class="section-number-3">2.5</span> <code>qmckl_adjugate_safe</code></h3>
|
||||
<div id="outline-container-org9d4544d" class="outline-3">
|
||||
<h3 id="org9d4544d"><span class="section-number-3">2.5</span> <code>qmckl_adjugate_safe</code></h3>
|
||||
<div class="outline-text-3" id="text-2-5">
|
||||
<p>
|
||||
"Size-safe" proxy function with the same functionality as <code>qmckl_adjugate</code>
|
||||
@ -1581,7 +1581,7 @@ NumPy arrays implies that sizes of the input and output arrays are provided.
|
||||
</p>
|
||||
|
||||
|
||||
<table id="orgb8e538d" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="org40f0151" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -1703,13 +1703,13 @@ LAPACK library.
|
||||
</p>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org20c93e7" class="outline-4">
|
||||
<h4 id="org20c93e7"><span class="section-number-4">2.5.1</span> C interface</h4>
|
||||
<div id="outline-container-org0eb74a1" class="outline-4">
|
||||
<h4 id="org0eb74a1"><span class="section-number-4">2.5.1</span> C interface</h4>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org440805a" class="outline-3">
|
||||
<h3 id="org440805a"><span class="section-number-3">2.6</span> <code>qmckl_transpose</code></h3>
|
||||
<div id="outline-container-org97b38d1" class="outline-3">
|
||||
<h3 id="org97b38d1"><span class="section-number-3">2.6</span> <code>qmckl_transpose</code></h3>
|
||||
<div class="outline-text-3" id="text-2-6">
|
||||
<p>
|
||||
Transposes a matrix: \(A^\dagger_{ji} = A_{ij}\).
|
||||
@ -1770,8 +1770,8 @@ Transposes a matrix: \(A^\dagger_{ji} = A_{ij}\).
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgf572071" class="outline-2">
|
||||
<h2 id="orgf572071"><span class="section-number-2">3</span> Utilities</h2>
|
||||
<div id="outline-container-org5017e6e" class="outline-2">
|
||||
<h2 id="org5017e6e"><span class="section-number-2">3</span> Utilities</h2>
|
||||
<div class="outline-text-2" id="text-3">
|
||||
<p>
|
||||
Trick to make MKL efficient on AMD
|
||||
@ -1789,7 +1789,7 @@ Trick to make MKL efficient on AMD
|
||||
</div>
|
||||
<div id="postamble" class="status">
|
||||
<p class="author">Author: TREX CoE</p>
|
||||
<p class="date">Created: 2024-12-13 Fri 15:09</p>
|
||||
<p class="date">Created: 2024-12-13 Fri 15:45</p>
|
||||
<p class="validation"><a href="http://validator.w3.org/check?uri=referer">Validate</a></p>
|
||||
</div>
|
||||
</body>
|
||||
|
||||
@ -3,7 +3,7 @@
|
||||
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
|
||||
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
|
||||
<head>
|
||||
<!-- 2024-12-13 Fri 15:09 -->
|
||||
<!-- 2024-12-13 Fri 15:45 -->
|
||||
<meta http-equiv="Content-Type" content="text/html;charset=utf-8" />
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1" />
|
||||
<title>Context</title>
|
||||
@ -324,21 +324,21 @@ for the JavaScript code in this tag.
|
||||
<h2>Table of Contents</h2>
|
||||
<div id="text-table-of-contents">
|
||||
<ul>
|
||||
<li><a href="#orgbb05625">1. Context handling</a>
|
||||
<li><a href="#orga7db57b">1. Context handling</a>
|
||||
<ul>
|
||||
<li><a href="#org73dd408">1.1. Data structure</a></li>
|
||||
<li><a href="#orgc16297f">1.2. Creation</a></li>
|
||||
<li><a href="#org5ddcb9e">1.3. Locking</a></li>
|
||||
<li><a href="#org77b6a11">1.4. <span class="todo TODO">TODO</span> Copy</a></li>
|
||||
<li><a href="#orgbd43772">1.5. Destroy</a></li>
|
||||
<li><a href="#orgb4203e9">1.1. Data structure</a></li>
|
||||
<li><a href="#org0dd24cd">1.2. Creation</a></li>
|
||||
<li><a href="#org1c40b15">1.3. Locking</a></li>
|
||||
<li><a href="#org44570eb">1.4. <span class="todo TODO">TODO</span> Copy</a></li>
|
||||
<li><a href="#org3cc70fb">1.5. Destroy</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgbb05625" class="outline-2">
|
||||
<h2 id="orgbb05625"><span class="section-number-2">1</span> Context handling</h2>
|
||||
<div id="outline-container-orga7db57b" class="outline-2">
|
||||
<h2 id="orga7db57b"><span class="section-number-2">1</span> Context handling</h2>
|
||||
<div class="outline-text-2" id="text-1">
|
||||
<p>
|
||||
The context variable is a handle for the state of the library,
|
||||
@ -351,7 +351,7 @@ A value of <code>QMCKL_NULL_CONTEXT</code> for the context is equivalent to a
|
||||
</p>
|
||||
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c" id="orgbcd62d9"><span style="color: #a020f0;">typedef</span> <span style="color: #228b22;">int64_t</span> <span style="color: #228b22;">qmckl_context</span> ;
|
||||
<pre class="src src-c" id="orgdaa319b"><span style="color: #a020f0;">typedef</span> <span style="color: #228b22;">int64_t</span> <span style="color: #228b22;">qmckl_context</span> ;
|
||||
<span style="color: #483d8b;">#define</span> <span style="color: #a0522d;">QMCKL_NULL_CONTEXT</span> (qmckl_context) 0
|
||||
</pre>
|
||||
</div>
|
||||
@ -369,8 +369,8 @@ and <code>ctx</code> is a <code>qmckl_context_struct*</code> pointer.
|
||||
</p>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org73dd408" class="outline-3">
|
||||
<h3 id="org73dd408"><span class="section-number-3">1.1</span> Data structure</h3>
|
||||
<div id="outline-container-orgb4203e9" class="outline-3">
|
||||
<h3 id="orgb4203e9"><span class="section-number-3">1.1</span> Data structure</h3>
|
||||
<div class="outline-text-3" id="text-1-1">
|
||||
<p>
|
||||
The qmckl<sub>extra</sub> pointer lets the other implementation of the library
|
||||
@ -406,7 +406,7 @@ to be recomputed. The date is incremented when the context is touched.
|
||||
|
||||
<p>
|
||||
When a new element is added to the context, the functions
|
||||
<a href="#orgc16297f"><code>qmckl_context_create</code></a> <a href="#orgbd43772"><code>qmckl_context_destroy</code></a> and <a href="#org77b6a11"><code>qmckl_context_copy</code></a>
|
||||
<a href="#org0dd24cd"><code>qmckl_context_create</code></a> <a href="#org3cc70fb"><code>qmckl_context_destroy</code></a> and <a href="#org44570eb"><code>qmckl_context_copy</code></a>
|
||||
should be updated in order to make deep copies.
|
||||
</p>
|
||||
|
||||
@ -427,8 +427,8 @@ This has the effect to increment the date of the context.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgc16297f" class="outline-3">
|
||||
<h3 id="orgc16297f"><span class="section-number-3">1.2</span> Creation</h3>
|
||||
<div id="outline-container-org0dd24cd" class="outline-3">
|
||||
<h3 id="org0dd24cd"><span class="section-number-3">1.2</span> Creation</h3>
|
||||
<div class="outline-text-3" id="text-1-2">
|
||||
<p>
|
||||
To create a new context, <code>qmckl_context_create()</code> should be used.
|
||||
@ -445,8 +445,8 @@ To create a new context, <code>qmckl_context_create()</code> should be used.
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
<div id="outline-container-org5ddcb9e" class="outline-3">
|
||||
<h3 id="org5ddcb9e"><span class="section-number-3">1.3</span> Locking</h3>
|
||||
<div id="outline-container-org1c40b15" class="outline-3">
|
||||
<h3 id="org1c40b15"><span class="section-number-3">1.3</span> Locking</h3>
|
||||
<div class="outline-text-3" id="text-1-3">
|
||||
<p>
|
||||
For thread safety, the context may be locked/unlocked. The lock is
|
||||
@ -462,8 +462,8 @@ number of times the thread has locked it is saved in the
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
<div id="outline-container-org77b6a11" class="outline-3">
|
||||
<h3 id="org77b6a11"><span class="section-number-3">1.4</span> <span class="todo TODO">TODO</span> Copy</h3>
|
||||
<div id="outline-container-org44570eb" class="outline-3">
|
||||
<h3 id="org44570eb"><span class="section-number-3">1.4</span> <span class="todo TODO">TODO</span> Copy</h3>
|
||||
<div class="outline-text-3" id="text-1-4">
|
||||
<p>
|
||||
<code>qmckl_context_copy</code> makes a deep copy of a context. It returns
|
||||
@ -471,8 +471,8 @@ number of times the thread has locked it is saved in the
|
||||
</p>
|
||||
</div>
|
||||
</div>
|
||||
<div id="outline-container-orgbd43772" class="outline-3">
|
||||
<h3 id="orgbd43772"><span class="section-number-3">1.5</span> Destroy</h3>
|
||||
<div id="outline-container-org3cc70fb" class="outline-3">
|
||||
<h3 id="org3cc70fb"><span class="section-number-3">1.5</span> Destroy</h3>
|
||||
<div class="outline-text-3" id="text-1-5">
|
||||
<p>
|
||||
The context is destroyed with <code>qmckl_context_destroy</code>, leaving the ancestors untouched.
|
||||
@ -490,7 +490,7 @@ It frees the context, and returns the previous context.
|
||||
</div>
|
||||
<div id="postamble" class="status">
|
||||
<p class="author">Author: TREX CoE</p>
|
||||
<p class="date">Created: 2024-12-13 Fri 15:09</p>
|
||||
<p class="date">Created: 2024-12-13 Fri 15:45</p>
|
||||
<p class="validation"><a href="http://validator.w3.org/check?uri=referer">Validate</a></p>
|
||||
</div>
|
||||
</body>
|
||||
|
||||
@ -3,7 +3,7 @@
|
||||
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
|
||||
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
|
||||
<head>
|
||||
<!-- 2024-12-13 Fri 15:09 -->
|
||||
<!-- 2024-12-13 Fri 15:45 -->
|
||||
<meta http-equiv="Content-Type" content="text/html;charset=utf-8" />
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1" />
|
||||
<title>Slater Determinant</title>
|
||||
@ -324,32 +324,32 @@ for the JavaScript code in this tag.
|
||||
<h2>Table of Contents</h2>
|
||||
<div id="text-table-of-contents">
|
||||
<ul>
|
||||
<li><a href="#org62e0068">1. Context</a>
|
||||
<li><a href="#org89650e3">1. Context</a>
|
||||
<ul>
|
||||
<li><a href="#orgcb31f08">1.1. Data structure</a></li>
|
||||
<li><a href="#orgefda369">1.2. Access functions</a></li>
|
||||
<li><a href="#org7300ba7">1.3. Initialization functions</a></li>
|
||||
<li><a href="#orgecdd163">1.4. Fortran Interfaces</a></li>
|
||||
<li><a href="#org065deec">1.5. Test</a></li>
|
||||
<li><a href="#org7866ef8">1.1. Data structure</a></li>
|
||||
<li><a href="#org8cafb55">1.2. Access functions</a></li>
|
||||
<li><a href="#org51ab463">1.3. Initialization functions</a></li>
|
||||
<li><a href="#org363992d">1.4. Fortran Interfaces</a></li>
|
||||
<li><a href="#org55cd61c">1.5. Test</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#org7169089">2. Computation</a>
|
||||
<li><a href="#orgda35052">2. Computation</a>
|
||||
<ul>
|
||||
<li><a href="#org1384c16">2.1. Determinant matrix</a>
|
||||
<li><a href="#orgf25a407">2.1. Determinant matrix</a>
|
||||
<ul>
|
||||
<li><a href="#orgd8f4be3">2.1.1. Get</a></li>
|
||||
<li><a href="#orge135382">2.1.2. Provide</a></li>
|
||||
<li><a href="#org92e7367">2.1.3. Compute alpha</a></li>
|
||||
<li><a href="#org4cbb003">2.1.4. Compute beta</a></li>
|
||||
<li><a href="#org7b897a6">2.1.5. Test</a></li>
|
||||
<li><a href="#org2933505">2.1.1. Get</a></li>
|
||||
<li><a href="#org40fbb84">2.1.2. Provide</a></li>
|
||||
<li><a href="#org5461c21">2.1.3. Compute alpha</a></li>
|
||||
<li><a href="#orgc685a41">2.1.4. Compute beta</a></li>
|
||||
<li><a href="#orge6410ad">2.1.5. Test</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#org0d5e100">2.2. Inverse of Determinant matrix</a>
|
||||
<li><a href="#org44bd5a9">2.2. Inverse of Determinant matrix</a>
|
||||
<ul>
|
||||
<li><a href="#org2039afe">2.2.1. Get</a></li>
|
||||
<li><a href="#org0a765f6">2.2.2. Provide</a></li>
|
||||
<li><a href="#orga7a8715">2.2.3. Compute alpha</a></li>
|
||||
<li><a href="#orgc9a172c">2.2.4. Compute beta</a></li>
|
||||
<li><a href="#org68124fb">2.2.1. Get</a></li>
|
||||
<li><a href="#org34a8756">2.2.2. Provide</a></li>
|
||||
<li><a href="#orgb00e1b9">2.2.3. Compute alpha</a></li>
|
||||
<li><a href="#org0c4fd68">2.2.4. Compute beta</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
@ -358,8 +358,8 @@ for the JavaScript code in this tag.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org62e0068" class="outline-2">
|
||||
<h2 id="org62e0068"><span class="section-number-2">1</span> Context</h2>
|
||||
<div id="outline-container-org89650e3" class="outline-2">
|
||||
<h2 id="org89650e3"><span class="section-number-2">1</span> Context</h2>
|
||||
<div class="outline-text-2" id="text-1">
|
||||
<p>
|
||||
The following arrays are stored in the context:
|
||||
@ -535,8 +535,8 @@ Computed data:
|
||||
</table>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgcb31f08" class="outline-3">
|
||||
<h3 id="orgcb31f08"><span class="section-number-3">1.1</span> Data structure</h3>
|
||||
<div id="outline-container-org7866ef8" class="outline-3">
|
||||
<h3 id="org7866ef8"><span class="section-number-3">1.1</span> Data structure</h3>
|
||||
<div class="outline-text-3" id="text-1-1">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #a020f0;">typedef</span> <span style="color: #a020f0;">struct</span> <span style="color: #228b22;">qmckl_determinant_struct</span> {
|
||||
@ -604,8 +604,8 @@ this mechanism.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgefda369" class="outline-3">
|
||||
<h3 id="orgefda369"><span class="section-number-3">1.2</span> Access functions</h3>
|
||||
<div id="outline-container-org8cafb55" class="outline-3">
|
||||
<h3 id="org8cafb55"><span class="section-number-3">1.2</span> Access functions</h3>
|
||||
<div class="outline-text-3" id="text-1-2">
|
||||
<p>
|
||||
When all the data for the slater determinants have been provided, the following
|
||||
@ -619,8 +619,8 @@ function returns <code>true</code>.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org7300ba7" class="outline-3">
|
||||
<h3 id="org7300ba7"><span class="section-number-3">1.3</span> Initialization functions</h3>
|
||||
<div id="outline-container-org51ab463" class="outline-3">
|
||||
<h3 id="org51ab463"><span class="section-number-3">1.3</span> Initialization functions</h3>
|
||||
<div class="outline-text-3" id="text-1-3">
|
||||
<p>
|
||||
To set the basis set, all the following functions need to be
|
||||
@ -643,24 +643,24 @@ computed to accelerate the calculations.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgecdd163" class="outline-3">
|
||||
<h3 id="orgecdd163"><span class="section-number-3">1.4</span> Fortran Interfaces</h3>
|
||||
<div id="outline-container-org363992d" class="outline-3">
|
||||
<h3 id="org363992d"><span class="section-number-3">1.4</span> Fortran Interfaces</h3>
|
||||
</div>
|
||||
<div id="outline-container-org065deec" class="outline-3">
|
||||
<h3 id="org065deec"><span class="section-number-3">1.5</span> Test</h3>
|
||||
<div id="outline-container-org55cd61c" class="outline-3">
|
||||
<h3 id="org55cd61c"><span class="section-number-3">1.5</span> Test</h3>
|
||||
</div>
|
||||
</div>
|
||||
<div id="outline-container-org7169089" class="outline-2">
|
||||
<h2 id="org7169089"><span class="section-number-2">2</span> Computation</h2>
|
||||
<div id="outline-container-orgda35052" class="outline-2">
|
||||
<h2 id="orgda35052"><span class="section-number-2">2</span> Computation</h2>
|
||||
<div class="outline-text-2" id="text-2">
|
||||
</div>
|
||||
<div id="outline-container-org1384c16" class="outline-3">
|
||||
<h3 id="org1384c16"><span class="section-number-3">2.1</span> Determinant matrix</h3>
|
||||
<div id="outline-container-orgf25a407" class="outline-3">
|
||||
<h3 id="orgf25a407"><span class="section-number-3">2.1</span> Determinant matrix</h3>
|
||||
<div class="outline-text-3" id="text-2-1">
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgd8f4be3" class="outline-4">
|
||||
<h4 id="orgd8f4be3"><span class="section-number-4">2.1.1</span> Get</h4>
|
||||
<div id="outline-container-org2933505" class="outline-4">
|
||||
<h4 id="org2933505"><span class="section-number-4">2.1.1</span> Get</h4>
|
||||
<div class="outline-text-4" id="text-2-1-1">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">qmckl_exit_code</span> <span style="color: #0000ff;">qmckl_get_det_vgl_alpha</span>(<span style="color: #228b22;">qmckl_context</span> <span style="color: #a0522d;">context</span>, <span style="color: #228b22;">double</span>* <span style="color: #a020f0;">const</span> <span style="color: #a0522d;">det_vgl_alpha</span>);
|
||||
@ -670,14 +670,14 @@ computed to accelerate the calculations.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orge135382" class="outline-4">
|
||||
<h4 id="orge135382"><span class="section-number-4">2.1.2</span> Provide</h4>
|
||||
<div id="outline-container-org40fbb84" class="outline-4">
|
||||
<h4 id="org40fbb84"><span class="section-number-4">2.1.2</span> Provide</h4>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org92e7367" class="outline-4">
|
||||
<h4 id="org92e7367"><span class="section-number-4">2.1.3</span> Compute alpha</h4>
|
||||
<div id="outline-container-org5461c21" class="outline-4">
|
||||
<h4 id="org5461c21"><span class="section-number-4">2.1.3</span> Compute alpha</h4>
|
||||
<div class="outline-text-4" id="text-2-1-3">
|
||||
<table id="org0c96c54" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="org23f794b" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -851,10 +851,10 @@ computed to accelerate the calculations.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org4cbb003" class="outline-4">
|
||||
<h4 id="org4cbb003"><span class="section-number-4">2.1.4</span> Compute beta</h4>
|
||||
<div id="outline-container-orgc685a41" class="outline-4">
|
||||
<h4 id="orgc685a41"><span class="section-number-4">2.1.4</span> Compute beta</h4>
|
||||
<div class="outline-text-4" id="text-2-1-4">
|
||||
<table id="org9cbb423" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="orgc32bad9" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -1028,18 +1028,18 @@ computed to accelerate the calculations.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org7b897a6" class="outline-4">
|
||||
<h4 id="org7b897a6"><span class="section-number-4">2.1.5</span> Test</h4>
|
||||
<div id="outline-container-orge6410ad" class="outline-4">
|
||||
<h4 id="orge6410ad"><span class="section-number-4">2.1.5</span> Test</h4>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org0d5e100" class="outline-3">
|
||||
<h3 id="org0d5e100"><span class="section-number-3">2.2</span> Inverse of Determinant matrix</h3>
|
||||
<div id="outline-container-org44bd5a9" class="outline-3">
|
||||
<h3 id="org44bd5a9"><span class="section-number-3">2.2</span> Inverse of Determinant matrix</h3>
|
||||
<div class="outline-text-3" id="text-2-2">
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org2039afe" class="outline-4">
|
||||
<h4 id="org2039afe"><span class="section-number-4">2.2.1</span> Get</h4>
|
||||
<div id="outline-container-org68124fb" class="outline-4">
|
||||
<h4 id="org68124fb"><span class="section-number-4">2.2.1</span> Get</h4>
|
||||
<div class="outline-text-4" id="text-2-2-1">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">qmckl_exit_code</span> <span style="color: #0000ff;">qmckl_get_det_inv_matrix_alpha</span>(<span style="color: #228b22;">qmckl_context</span> <span style="color: #a0522d;">context</span>, <span style="color: #228b22;">double</span>* <span style="color: #a020f0;">const</span> <span style="color: #a0522d;">det_inv_matrix_alpha</span>);
|
||||
@ -1053,14 +1053,14 @@ computed to accelerate the calculations.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org0a765f6" class="outline-4">
|
||||
<h4 id="org0a765f6"><span class="section-number-4">2.2.2</span> Provide</h4>
|
||||
<div id="outline-container-org34a8756" class="outline-4">
|
||||
<h4 id="org34a8756"><span class="section-number-4">2.2.2</span> Provide</h4>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orga7a8715" class="outline-4">
|
||||
<h4 id="orga7a8715"><span class="section-number-4">2.2.3</span> Compute alpha</h4>
|
||||
<div id="outline-container-orgb00e1b9" class="outline-4">
|
||||
<h4 id="orgb00e1b9"><span class="section-number-4">2.2.3</span> Compute alpha</h4>
|
||||
<div class="outline-text-4" id="text-2-2-3">
|
||||
<table id="orgc6bcae7" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="org703c054" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -1222,10 +1222,10 @@ computed to accelerate the calculations.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgc9a172c" class="outline-4">
|
||||
<h4 id="orgc9a172c"><span class="section-number-4">2.2.4</span> Compute beta</h4>
|
||||
<div id="outline-container-org0c4fd68" class="outline-4">
|
||||
<h4 id="org0c4fd68"><span class="section-number-4">2.2.4</span> Compute beta</h4>
|
||||
<div class="outline-text-4" id="text-2-2-4">
|
||||
<table id="orgc09f81e" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="org275234e" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -1392,7 +1392,7 @@ computed to accelerate the calculations.
|
||||
</div>
|
||||
<div id="postamble" class="status">
|
||||
<p class="author">Author: TREX CoE</p>
|
||||
<p class="date">Created: 2024-12-13 Fri 15:09</p>
|
||||
<p class="date">Created: 2024-12-13 Fri 15:45</p>
|
||||
<p class="validation"><a href="http://validator.w3.org/check?uri=referer">Validate</a></p>
|
||||
</div>
|
||||
</body>
|
||||
|
||||
@ -3,7 +3,7 @@
|
||||
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
|
||||
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
|
||||
<head>
|
||||
<!-- 2024-12-13 Fri 15:09 -->
|
||||
<!-- 2024-12-13 Fri 15:45 -->
|
||||
<meta http-equiv="Content-Type" content="text/html;charset=utf-8" />
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1" />
|
||||
<title>Inter-particle distances</title>
|
||||
@ -346,54 +346,54 @@ for the JavaScript code in this tag.
|
||||
<h2>Table of Contents</h2>
|
||||
<div id="text-table-of-contents">
|
||||
<ul>
|
||||
<li><a href="#org3542877">1. Squared distance</a>
|
||||
<li><a href="#orgaa040dc">1. Squared distance</a>
|
||||
<ul>
|
||||
<li><a href="#org57e2b7b">1.1. <code>qmckl_distance_sq</code></a>
|
||||
<li><a href="#orgaccb09d">1.1. <code>qmckl_distance_sq</code></a>
|
||||
<ul>
|
||||
<li><a href="#orgef805ba">1.1.1. Performance</a></li>
|
||||
<li><a href="#org5cbaacd">1.1.1. Performance</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#org0a4cc2c">2. Distance</a>
|
||||
<li><a href="#org7009f08">2. Distance</a>
|
||||
<ul>
|
||||
<li><a href="#org1fc9a5c">2.1. <code>qmckl_distance</code></a>
|
||||
<li><a href="#orgdfa9a31">2.1. <code>qmckl_distance</code></a>
|
||||
<ul>
|
||||
<li><a href="#orgd6e8a64">2.1.1. Requirements</a></li>
|
||||
<li><a href="#orgb5b714f">2.1.2. C header</a></li>
|
||||
<li><a href="#orge078be3">2.1.3. Source</a></li>
|
||||
<li><a href="#orge47d661">2.1.4. Performance</a></li>
|
||||
<li><a href="#org350844c">2.1.1. Requirements</a></li>
|
||||
<li><a href="#org54176c8">2.1.2. C header</a></li>
|
||||
<li><a href="#orgced190f">2.1.3. Source</a></li>
|
||||
<li><a href="#org25c86f7">2.1.4. Performance</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#orgedcecc5">3. Rescaled Distance</a>
|
||||
<li><a href="#orge33bf53">3. Rescaled Distance</a>
|
||||
<ul>
|
||||
<li><a href="#org1dc263b">3.1. <code>qmckl_distance_rescaled</code></a>
|
||||
<li><a href="#orgd7424e6">3.1. <code>qmckl_distance_rescaled</code></a>
|
||||
<ul>
|
||||
<li><a href="#orgc0b8bfe">3.1.1. Requirements</a></li>
|
||||
<li><a href="#org032f67b">3.1.2. C header</a></li>
|
||||
<li><a href="#org814ba0f">3.1.3. Source</a></li>
|
||||
<li><a href="#org7e7a6c7">3.1.4. Performance</a></li>
|
||||
<li><a href="#orgd956f2c">3.1.1. Requirements</a></li>
|
||||
<li><a href="#org5a089b2">3.1.2. C header</a></li>
|
||||
<li><a href="#org6680065">3.1.3. Source</a></li>
|
||||
<li><a href="#org0bcee99">3.1.4. Performance</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#org707ab36">4. Rescaled Distance Derivatives</a>
|
||||
<li><a href="#org429616a">4. Rescaled Distance Derivatives</a>
|
||||
<ul>
|
||||
<li><a href="#org95a5f8a">4.1. <code>qmckl_distance_rescaled_gl</code></a></li>
|
||||
<li><a href="#orgb2918df">4.1. <code>qmckl_distance_rescaled_gl</code></a></li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org3542877" class="outline-2">
|
||||
<h2 id="org3542877"><span class="section-number-2">1</span> Squared distance</h2>
|
||||
<div id="outline-container-orgaa040dc" class="outline-2">
|
||||
<h2 id="orgaa040dc"><span class="section-number-2">1</span> Squared distance</h2>
|
||||
<div class="outline-text-2" id="text-1">
|
||||
</div>
|
||||
<div id="outline-container-org57e2b7b" class="outline-3">
|
||||
<h3 id="org57e2b7b"><span class="section-number-3">1.1</span> <code>qmckl_distance_sq</code></h3>
|
||||
<div id="outline-container-orgaccb09d" class="outline-3">
|
||||
<h3 id="orgaccb09d"><span class="section-number-3">1.1</span> <code>qmckl_distance_sq</code></h3>
|
||||
<div class="outline-text-3" id="text-1-1">
|
||||
<p>
|
||||
<code>qmckl_distance_sq</code> computes the matrix of the squared distances
|
||||
@ -406,7 +406,7 @@ between all pairs of points in two sets, one point within each set:
|
||||
\]
|
||||
</p>
|
||||
|
||||
<table id="org442b4cb" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="orgb3ebf8f" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -678,8 +678,8 @@ Requirements:
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgef805ba" class="outline-4">
|
||||
<h4 id="orgef805ba"><span class="section-number-4">1.1.1</span> Performance</h4>
|
||||
<div id="outline-container-org5cbaacd" class="outline-4">
|
||||
<h4 id="org5cbaacd"><span class="section-number-4">1.1.1</span> Performance</h4>
|
||||
<div class="outline-text-4" id="text-1-1-1">
|
||||
<p>
|
||||
This function is more efficient when <code>A</code> and <code>B</code> are
|
||||
@ -689,12 +689,12 @@ transposed.
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
<div id="outline-container-org0a4cc2c" class="outline-2">
|
||||
<h2 id="org0a4cc2c"><span class="section-number-2">2</span> Distance</h2>
|
||||
<div id="outline-container-org7009f08" class="outline-2">
|
||||
<h2 id="org7009f08"><span class="section-number-2">2</span> Distance</h2>
|
||||
<div class="outline-text-2" id="text-2">
|
||||
</div>
|
||||
<div id="outline-container-org1fc9a5c" class="outline-3">
|
||||
<h3 id="org1fc9a5c"><span class="section-number-3">2.1</span> <code>qmckl_distance</code></h3>
|
||||
<div id="outline-container-orgdfa9a31" class="outline-3">
|
||||
<h3 id="orgdfa9a31"><span class="section-number-3">2.1</span> <code>qmckl_distance</code></h3>
|
||||
<div class="outline-text-3" id="text-2-1">
|
||||
<p>
|
||||
<code>qmckl_distance</code> computes the matrix of the distances between all
|
||||
@ -712,7 +712,7 @@ If the input array is normal (<code>'N'</code>), the xyz coordinates are in
|
||||
the leading dimension: <code>[n][3]</code> in C and <code>(3,n)</code> in Fortran.
|
||||
</p>
|
||||
|
||||
<table id="org536bc67" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="org3592e28" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -813,8 +813,8 @@ the leading dimension: <code>[n][3]</code> in C and <code>(3,n)</code> in Fortra
|
||||
</table>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgd6e8a64" class="outline-4">
|
||||
<h4 id="orgd6e8a64"><span class="section-number-4">2.1.1</span> Requirements</h4>
|
||||
<div id="outline-container-org350844c" class="outline-4">
|
||||
<h4 id="org350844c"><span class="section-number-4">2.1.1</span> Requirements</h4>
|
||||
<div class="outline-text-4" id="text-2-1-1">
|
||||
<ul class="org-ul">
|
||||
<li><code>context</code> is not <code>QMCKL_NULL_CONTEXT</code></li>
|
||||
@ -832,8 +832,8 @@ the leading dimension: <code>[n][3]</code> in C and <code>(3,n)</code> in Fortra
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgb5b714f" class="outline-4">
|
||||
<h4 id="orgb5b714f"><span class="section-number-4">2.1.2</span> C header</h4>
|
||||
<div id="outline-container-org54176c8" class="outline-4">
|
||||
<h4 id="org54176c8"><span class="section-number-4">2.1.2</span> C header</h4>
|
||||
<div class="outline-text-4" id="text-2-1-2">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">qmckl_exit_code</span> <span style="color: #0000ff;">qmckl_distance</span> (
|
||||
@ -853,8 +853,8 @@ the leading dimension: <code>[n][3]</code> in C and <code>(3,n)</code> in Fortra
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orge078be3" class="outline-4">
|
||||
<h4 id="orge078be3"><span class="section-number-4">2.1.3</span> Source</h4>
|
||||
<div id="outline-container-orgced190f" class="outline-4">
|
||||
<h4 id="orgced190f"><span class="section-number-4">2.1.3</span> Source</h4>
|
||||
<div class="outline-text-4" id="text-2-1-3">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-f90"><span style="color: #a020f0;">function</span> <span style="color: #0000ff;">qmckl_distance</span>(context, transa, transb, m, n, <span style="color: #a020f0;">&</span>
|
||||
@ -1004,8 +1004,8 @@ the leading dimension: <code>[n][3]</code> in C and <code>(3,n)</code> in Fortra
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orge47d661" class="outline-4">
|
||||
<h4 id="orge47d661"><span class="section-number-4">2.1.4</span> Performance</h4>
|
||||
<div id="outline-container-org25c86f7" class="outline-4">
|
||||
<h4 id="org25c86f7"><span class="section-number-4">2.1.4</span> Performance</h4>
|
||||
<div class="outline-text-4" id="text-2-1-4">
|
||||
<p>
|
||||
This function is more efficient when <code>A</code> and <code>B</code> are transposed.
|
||||
@ -1015,12 +1015,12 @@ This function is more efficient when <code>A</code> and <code>B</code> are trans
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgedcecc5" class="outline-2">
|
||||
<h2 id="orgedcecc5"><span class="section-number-2">3</span> Rescaled Distance</h2>
|
||||
<div id="outline-container-orge33bf53" class="outline-2">
|
||||
<h2 id="orge33bf53"><span class="section-number-2">3</span> Rescaled Distance</h2>
|
||||
<div class="outline-text-2" id="text-3">
|
||||
</div>
|
||||
<div id="outline-container-org1dc263b" class="outline-3">
|
||||
<h3 id="org1dc263b"><span class="section-number-3">3.1</span> <code>qmckl_distance_rescaled</code></h3>
|
||||
<div id="outline-container-orgd7424e6" class="outline-3">
|
||||
<h3 id="orgd7424e6"><span class="section-number-3">3.1</span> <code>qmckl_distance_rescaled</code></h3>
|
||||
<div class="outline-text-3" id="text-3-1">
|
||||
<p>
|
||||
<code>qmckl_distance_rescaled</code> computes the matrix of the rescaled distances between all
|
||||
@ -1038,7 +1038,7 @@ If the input array is normal (<code>'N'</code>), the xyz coordinates are in
|
||||
the leading dimension: <code>[n][3]</code> in C and <code>(3,n)</code> in Fortran.
|
||||
</p>
|
||||
|
||||
<table id="orga2cd38f" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="orgc54742d" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -1146,8 +1146,8 @@ the leading dimension: <code>[n][3]</code> in C and <code>(3,n)</code> in Fortra
|
||||
</table>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgc0b8bfe" class="outline-4">
|
||||
<h4 id="orgc0b8bfe"><span class="section-number-4">3.1.1</span> Requirements</h4>
|
||||
<div id="outline-container-orgd956f2c" class="outline-4">
|
||||
<h4 id="orgd956f2c"><span class="section-number-4">3.1.1</span> Requirements</h4>
|
||||
<div class="outline-text-4" id="text-3-1-1">
|
||||
<ul class="org-ul">
|
||||
<li><code>context</code> is not <code>QMCKL_NULL_CONTEXT</code></li>
|
||||
@ -1165,8 +1165,8 @@ the leading dimension: <code>[n][3]</code> in C and <code>(3,n)</code> in Fortra
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org032f67b" class="outline-4">
|
||||
<h4 id="org032f67b"><span class="section-number-4">3.1.2</span> C header</h4>
|
||||
<div id="outline-container-org5a089b2" class="outline-4">
|
||||
<h4 id="org5a089b2"><span class="section-number-4">3.1.2</span> C header</h4>
|
||||
<div class="outline-text-4" id="text-3-1-2">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">qmckl_exit_code</span> <span style="color: #0000ff;">qmckl_distance_rescaled</span> (
|
||||
@ -1187,8 +1187,8 @@ the leading dimension: <code>[n][3]</code> in C and <code>(3,n)</code> in Fortra
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org814ba0f" class="outline-4">
|
||||
<h4 id="org814ba0f"><span class="section-number-4">3.1.3</span> Source</h4>
|
||||
<div id="outline-container-org6680065" class="outline-4">
|
||||
<h4 id="org6680065"><span class="section-number-4">3.1.3</span> Source</h4>
|
||||
<div class="outline-text-4" id="text-3-1-3">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-f90"><span style="color: #a020f0;">function</span> <span style="color: #0000ff;">qmckl_distance_rescaled</span>(context, transa, transb, m, n, <span style="color: #a020f0;">&</span>
|
||||
@ -1341,8 +1341,8 @@ the leading dimension: <code>[n][3]</code> in C and <code>(3,n)</code> in Fortra
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org7e7a6c7" class="outline-4">
|
||||
<h4 id="org7e7a6c7"><span class="section-number-4">3.1.4</span> Performance</h4>
|
||||
<div id="outline-container-org0bcee99" class="outline-4">
|
||||
<h4 id="org0bcee99"><span class="section-number-4">3.1.4</span> Performance</h4>
|
||||
<div class="outline-text-4" id="text-3-1-4">
|
||||
<p>
|
||||
This function is more efficient when <code>A</code> and <code>B</code> are transposed.
|
||||
@ -1351,12 +1351,12 @@ This function is more efficient when <code>A</code> and <code>B</code> are trans
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
<div id="outline-container-org707ab36" class="outline-2">
|
||||
<h2 id="org707ab36"><span class="section-number-2">4</span> Rescaled Distance Derivatives</h2>
|
||||
<div id="outline-container-org429616a" class="outline-2">
|
||||
<h2 id="org429616a"><span class="section-number-2">4</span> Rescaled Distance Derivatives</h2>
|
||||
<div class="outline-text-2" id="text-4">
|
||||
</div>
|
||||
<div id="outline-container-org95a5f8a" class="outline-3">
|
||||
<h3 id="org95a5f8a"><span class="section-number-3">4.1</span> <code>qmckl_distance_rescaled_gl</code></h3>
|
||||
<div id="outline-container-orgb2918df" class="outline-3">
|
||||
<h3 id="orgb2918df"><span class="section-number-3">4.1</span> <code>qmckl_distance_rescaled_gl</code></h3>
|
||||
<div class="outline-text-3" id="text-4-1">
|
||||
<p>
|
||||
<code>qmckl_distance_rescaled_gl</code> computes the matrix of the gradient and Laplacian of the
|
||||
@ -1411,7 +1411,7 @@ If the input array is normal (<code>'N'</code>), the xyz coordinates are in
|
||||
the leading dimension: <code>[n][3]</code> in C and <code>(3,n)</code> in Fortran.
|
||||
</p>
|
||||
|
||||
<table id="org617f712" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="org000f2c0" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -1731,7 +1731,7 @@ This function is more efficient when <code>A</code> and <code>B</code> are trans
|
||||
</div>
|
||||
<div id="postamble" class="status">
|
||||
<p class="author">Author: TREX CoE</p>
|
||||
<p class="date">Created: 2024-12-13 Fri 15:09</p>
|
||||
<p class="date">Created: 2024-12-13 Fri 15:45</p>
|
||||
<p class="validation"><a href="http://validator.w3.org/check?uri=referer">Validate</a></p>
|
||||
</div>
|
||||
</body>
|
||||
|
||||
@ -3,7 +3,7 @@
|
||||
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
|
||||
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
|
||||
<head>
|
||||
<!-- 2024-12-13 Fri 15:08 -->
|
||||
<!-- 2024-12-13 Fri 15:44 -->
|
||||
<meta http-equiv="Content-Type" content="text/html;charset=utf-8" />
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1" />
|
||||
<title>Electrons</title>
|
||||
@ -346,59 +346,59 @@ for the JavaScript code in this tag.
|
||||
<h2>Table of Contents</h2>
|
||||
<div id="text-table-of-contents">
|
||||
<ul>
|
||||
<li><a href="#orgbf2bc69">1. Context</a>
|
||||
<li><a href="#org6f1c625">1. Context</a>
|
||||
<ul>
|
||||
<li><a href="#org936800e">1.1. Data structure</a></li>
|
||||
<li><a href="#orgcecd964">1.2. Initialization functions</a></li>
|
||||
<li><a href="#org7aad39a">1.3. Access functions</a>
|
||||
<li><a href="#orgbd8d832">1.1. Data structure</a></li>
|
||||
<li><a href="#org23474c8">1.2. Initialization functions</a></li>
|
||||
<li><a href="#org9978d41">1.3. Access functions</a>
|
||||
<ul>
|
||||
<li><a href="#org4ba1397">1.3.1. Number of electrons</a></li>
|
||||
<li><a href="#orgb6cbb45">1.3.2. Number of walkers</a></li>
|
||||
<li><a href="#org869364a">1.3.3. Electron coordinates</a></li>
|
||||
<li><a href="#orgfb619d8">1.3.1. Number of electrons</a></li>
|
||||
<li><a href="#org37c4fe3">1.3.2. Number of walkers</a></li>
|
||||
<li><a href="#org5c956dc">1.3.3. Electron coordinates</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#org6a1bf88">1.4. Test</a></li>
|
||||
<li><a href="#orge165e58">1.4. Test</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#orgf327f78">2. Computation</a>
|
||||
<li><a href="#org9680552">2. Computation</a>
|
||||
<ul>
|
||||
<li><a href="#orgf1b8ea7">2.1. Electron-electron distances</a>
|
||||
<li><a href="#org3be8712">2.1. Electron-electron distances</a>
|
||||
<ul>
|
||||
<li><a href="#orgeb6a516">2.1.1. Get</a></li>
|
||||
<li><a href="#org92d61fd">2.1.2. Compute</a></li>
|
||||
<li><a href="#org12f05b8">2.1.3. Test</a></li>
|
||||
<li><a href="#org70cfb7f">2.1.1. Get</a></li>
|
||||
<li><a href="#orga6f486f">2.1.2. Compute</a></li>
|
||||
<li><a href="#orgef64030">2.1.3. Test</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#org250295d">2.2. Electron-electron potential</a>
|
||||
<li><a href="#org5fbefe3">2.2. Electron-electron potential</a>
|
||||
<ul>
|
||||
<li><a href="#orge2942d9">2.2.1. Get</a></li>
|
||||
<li><a href="#org95c2077">2.2.2. Compute</a></li>
|
||||
<li><a href="#org0845789">2.2.3. Test</a></li>
|
||||
<li><a href="#org2a523e0">2.2.1. Get</a></li>
|
||||
<li><a href="#org1dd9b46">2.2.2. Compute</a></li>
|
||||
<li><a href="#org14ab434">2.2.3. Test</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#orgfd71b9a">2.3. Electron-nucleus distances</a>
|
||||
<li><a href="#orgc4a7f6e">2.3. Electron-nucleus distances</a>
|
||||
<ul>
|
||||
<li><a href="#org89f9fb8">2.3.1. Get</a></li>
|
||||
<li><a href="#orgf7b627a">2.3.2. Compute</a></li>
|
||||
<li><a href="#org374aa59">2.3.3. Test</a></li>
|
||||
<li><a href="#org38c560d">2.3.1. Get</a></li>
|
||||
<li><a href="#orga3b0ba8">2.3.2. Compute</a></li>
|
||||
<li><a href="#org731d7ef">2.3.3. Test</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#org7531e26">2.4. Electron-nucleus potential</a>
|
||||
<li><a href="#org5aa9590">2.4. Electron-nucleus potential</a>
|
||||
<ul>
|
||||
<li><a href="#org873fba3">2.4.1. Get</a></li>
|
||||
<li><a href="#org8416a33">2.4.2. Compute</a></li>
|
||||
<li><a href="#orga909f2d">2.4.3. Test</a></li>
|
||||
<li><a href="#org3d2e0f5">2.4.1. Get</a></li>
|
||||
<li><a href="#org5038594">2.4.2. Compute</a></li>
|
||||
<li><a href="#orgb6b32bd">2.4.3. Test</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#orgf0461e0">2.5. Generate initial coordinates</a></li>
|
||||
<li><a href="#org45e3716">2.5. Generate initial coordinates</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgbf2bc69" class="outline-2">
|
||||
<h2 id="orgbf2bc69"><span class="section-number-2">1</span> Context</h2>
|
||||
<div id="outline-container-org6f1c625" class="outline-2">
|
||||
<h2 id="org6f1c625"><span class="section-number-2">1</span> Context</h2>
|
||||
<div class="outline-text-2" id="text-1">
|
||||
<p>
|
||||
The following data stored in the context:
|
||||
@ -539,8 +539,8 @@ Computed data:
|
||||
</table>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org936800e" class="outline-3">
|
||||
<h3 id="org936800e"><span class="section-number-3">1.1</span> Data structure</h3>
|
||||
<div id="outline-container-orgbd8d832" class="outline-3">
|
||||
<h3 id="orgbd8d832"><span class="section-number-3">1.1</span> Data structure</h3>
|
||||
<div class="outline-text-3" id="text-1-1">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c">
|
||||
@ -609,8 +609,8 @@ this mechanism.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgcecd964" class="outline-3">
|
||||
<h3 id="orgcecd964"><span class="section-number-3">1.2</span> Initialization functions</h3>
|
||||
<div id="outline-container-org23474c8" class="outline-3">
|
||||
<h3 id="org23474c8"><span class="section-number-3">1.2</span> Initialization functions</h3>
|
||||
<div class="outline-text-3" id="text-1-2">
|
||||
<p>
|
||||
To set the data relative to the electrons in the context, the
|
||||
@ -683,8 +683,8 @@ in the context.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org7aad39a" class="outline-3">
|
||||
<h3 id="org7aad39a"><span class="section-number-3">1.3</span> Access functions</h3>
|
||||
<div id="outline-container-org9978d41" class="outline-3">
|
||||
<h3 id="org9978d41"><span class="section-number-3">1.3</span> Access functions</h3>
|
||||
<div class="outline-text-3" id="text-1-3">
|
||||
<p>
|
||||
Access functions return <code>QMCKL_SUCCESS</code> when the data has been
|
||||
@ -696,12 +696,12 @@ contains the requested data. Otherwise, this variable is untouched.
|
||||
</p>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org4ba1397" class="outline-4">
|
||||
<h4 id="org4ba1397"><span class="section-number-4">1.3.1</span> Number of electrons</h4>
|
||||
<div id="outline-container-orgfb619d8" class="outline-4">
|
||||
<h4 id="orgfb619d8"><span class="section-number-4">1.3.1</span> Number of electrons</h4>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgb6cbb45" class="outline-4">
|
||||
<h4 id="orgb6cbb45"><span class="section-number-4">1.3.2</span> Number of walkers</h4>
|
||||
<div id="outline-container-org37c4fe3" class="outline-4">
|
||||
<h4 id="org37c4fe3"><span class="section-number-4">1.3.2</span> Number of walkers</h4>
|
||||
<div class="outline-text-4" id="text-1-3-2">
|
||||
<p>
|
||||
A walker is a set of electron coordinates that are arguments of
|
||||
@ -710,8 +710,8 @@ the wave function. <code>walk_num</code> is the number of walkers.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org869364a" class="outline-4">
|
||||
<h4 id="org869364a"><span class="section-number-4">1.3.3</span> Electron coordinates</h4>
|
||||
<div id="outline-container-org5c956dc" class="outline-4">
|
||||
<h4 id="org5c956dc"><span class="section-number-4">1.3.3</span> Electron coordinates</h4>
|
||||
<div class="outline-text-4" id="text-1-3-3">
|
||||
<p>
|
||||
Returns the current electron coordinates. The pointer is assumed
|
||||
@ -776,8 +776,8 @@ current points.
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
<div id="outline-container-org6a1bf88" class="outline-3">
|
||||
<h3 id="org6a1bf88"><span class="section-number-3">1.4</span> Test</h3>
|
||||
<div id="outline-container-orge165e58" class="outline-3">
|
||||
<h3 id="orge165e58"><span class="section-number-3">1.4</span> Test</h3>
|
||||
<div class="outline-text-3" id="text-1-4">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c">/* <span style="color: #b22222;">Reference input data</span> */
|
||||
@ -856,8 +856,8 @@ rc = qmckl_get_electron_coord (context, <span style="color: #8b2252;">'N'</span>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgf327f78" class="outline-2">
|
||||
<h2 id="orgf327f78"><span class="section-number-2">2</span> Computation</h2>
|
||||
<div id="outline-container-org9680552" class="outline-2">
|
||||
<h2 id="org9680552"><span class="section-number-2">2</span> Computation</h2>
|
||||
<div class="outline-text-2" id="text-2">
|
||||
<p>
|
||||
The computed data is stored in the context so that it can be reused
|
||||
@ -870,12 +870,12 @@ current date is stored.
|
||||
</p>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgf1b8ea7" class="outline-3">
|
||||
<h3 id="orgf1b8ea7"><span class="section-number-3">2.1</span> Electron-electron distances</h3>
|
||||
<div id="outline-container-org3be8712" class="outline-3">
|
||||
<h3 id="org3be8712"><span class="section-number-3">2.1</span> Electron-electron distances</h3>
|
||||
<div class="outline-text-3" id="text-2-1">
|
||||
</div>
|
||||
<div id="outline-container-orgeb6a516" class="outline-4">
|
||||
<h4 id="orgeb6a516"><span class="section-number-4">2.1.1</span> Get</h4>
|
||||
<div id="outline-container-org70cfb7f" class="outline-4">
|
||||
<h4 id="org70cfb7f"><span class="section-number-4">2.1.1</span> Get</h4>
|
||||
<div class="outline-text-4" id="text-2-1-1">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">qmckl_exit_code</span>
|
||||
@ -887,10 +887,10 @@ current date is stored.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org92d61fd" class="outline-4">
|
||||
<h4 id="org92d61fd"><span class="section-number-4">2.1.2</span> Compute</h4>
|
||||
<div id="outline-container-orga6f486f" class="outline-4">
|
||||
<h4 id="orga6f486f"><span class="section-number-4">2.1.2</span> Compute</h4>
|
||||
<div class="outline-text-4" id="text-2-1-2">
|
||||
<table id="org72f8ba9" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="org9bb3012" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -995,8 +995,8 @@ current date is stored.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org12f05b8" class="outline-4">
|
||||
<h4 id="org12f05b8"><span class="section-number-4">2.1.3</span> Test</h4>
|
||||
<div id="outline-container-orgef64030" class="outline-4">
|
||||
<h4 id="orgef64030"><span class="section-number-4">2.1.3</span> Test</h4>
|
||||
<div class="outline-text-4" id="text-2-1-3">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #0000ff;">assert</span>(<span style="color: #228b22;">qmckl_electron_provided</span>(<span style="color: #a0522d;">context</span>));
|
||||
@ -1030,8 +1030,8 @@ rc = qmckl_get_electron_ee_distance(context, ee_distance, walk_num * elec_num *
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org250295d" class="outline-3">
|
||||
<h3 id="org250295d"><span class="section-number-3">2.2</span> Electron-electron potential</h3>
|
||||
<div id="outline-container-org5fbefe3" class="outline-3">
|
||||
<h3 id="org5fbefe3"><span class="section-number-3">2.2</span> Electron-electron potential</h3>
|
||||
<div class="outline-text-3" id="text-2-2">
|
||||
<p>
|
||||
<code>ee_potential</code> is given by
|
||||
@ -1049,8 +1049,8 @@ distance.
|
||||
</p>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orge2942d9" class="outline-4">
|
||||
<h4 id="orge2942d9"><span class="section-number-4">2.2.1</span> Get</h4>
|
||||
<div id="outline-container-org2a523e0" class="outline-4">
|
||||
<h4 id="org2a523e0"><span class="section-number-4">2.2.1</span> Get</h4>
|
||||
<div class="outline-text-4" id="text-2-2-1">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">qmckl_exit_code</span> <span style="color: #0000ff;">qmckl_get_electron_ee_potential</span>(<span style="color: #228b22;">qmckl_context</span> <span style="color: #a0522d;">context</span>, <span style="color: #228b22;">double</span>* <span style="color: #a020f0;">const</span> <span style="color: #a0522d;">ee_potential</span>);
|
||||
@ -1059,10 +1059,10 @@ distance.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org95c2077" class="outline-4">
|
||||
<h4 id="org95c2077"><span class="section-number-4">2.2.2</span> Compute</h4>
|
||||
<div id="outline-container-org1dd9b46" class="outline-4">
|
||||
<h4 id="org1dd9b46"><span class="section-number-4">2.2.2</span> Compute</h4>
|
||||
<div class="outline-text-4" id="text-2-2-2">
|
||||
<table id="orgb5cbe9c" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="org65b6de6" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -1178,8 +1178,8 @@ distance.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org0845789" class="outline-4">
|
||||
<h4 id="org0845789"><span class="section-number-4">2.2.3</span> Test</h4>
|
||||
<div id="outline-container-org14ab434" class="outline-4">
|
||||
<h4 id="org14ab434"><span class="section-number-4">2.2.3</span> Test</h4>
|
||||
<div class="outline-text-4" id="text-2-2-3">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">double</span> <span style="color: #a0522d;">ee_potential</span>[walk_num];
|
||||
@ -1191,12 +1191,12 @@ rc = qmckl_get_electron_ee_potential(context, &(ee_potential[0]));
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
<div id="outline-container-orgfd71b9a" class="outline-3">
|
||||
<h3 id="orgfd71b9a"><span class="section-number-3">2.3</span> Electron-nucleus distances</h3>
|
||||
<div id="outline-container-orgc4a7f6e" class="outline-3">
|
||||
<h3 id="orgc4a7f6e"><span class="section-number-3">2.3</span> Electron-nucleus distances</h3>
|
||||
<div class="outline-text-3" id="text-2-3">
|
||||
</div>
|
||||
<div id="outline-container-org89f9fb8" class="outline-4">
|
||||
<h4 id="org89f9fb8"><span class="section-number-4">2.3.1</span> Get</h4>
|
||||
<div id="outline-container-org38c560d" class="outline-4">
|
||||
<h4 id="org38c560d"><span class="section-number-4">2.3.1</span> Get</h4>
|
||||
<div class="outline-text-4" id="text-2-3-1">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">qmckl_exit_code</span> <span style="color: #0000ff;">qmckl_get_electron_en_distance</span>(<span style="color: #228b22;">qmckl_context</span> <span style="color: #a0522d;">context</span>, <span style="color: #228b22;">double</span>* <span style="color: #a0522d;">distance</span>);
|
||||
@ -1205,10 +1205,10 @@ rc = qmckl_get_electron_ee_potential(context, &(ee_potential[0]));
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgf7b627a" class="outline-4">
|
||||
<h4 id="orgf7b627a"><span class="section-number-4">2.3.2</span> Compute</h4>
|
||||
<div id="outline-container-orga3b0ba8" class="outline-4">
|
||||
<h4 id="orga3b0ba8"><span class="section-number-4">2.3.2</span> Compute</h4>
|
||||
<div class="outline-text-4" id="text-2-3-2">
|
||||
<table id="org649ef4b" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="org0751ad4" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -1315,8 +1315,8 @@ rc = qmckl_get_electron_ee_potential(context, &(ee_potential[0]));
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org374aa59" class="outline-4">
|
||||
<h4 id="org374aa59"><span class="section-number-4">2.3.3</span> Test</h4>
|
||||
<div id="outline-container-org731d7ef" class="outline-4">
|
||||
<h4 id="org731d7ef"><span class="section-number-4">2.3.3</span> Test</h4>
|
||||
<div class="outline-text-4" id="text-2-3-3">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c">
|
||||
@ -1364,8 +1364,8 @@ rc = qmckl_get_electron_en_distance(context, &(en_distance[0][0][0]));
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org7531e26" class="outline-3">
|
||||
<h3 id="org7531e26"><span class="section-number-3">2.4</span> Electron-nucleus potential</h3>
|
||||
<div id="outline-container-org5aa9590" class="outline-3">
|
||||
<h3 id="org5aa9590"><span class="section-number-3">2.4</span> Electron-nucleus potential</h3>
|
||||
<div class="outline-text-3" id="text-2-4">
|
||||
<p>
|
||||
<code>en_potential</code> stores the <code>en</code> potential energy
|
||||
@ -1383,8 +1383,8 @@ distance and \[Z_A\] is the nuclear charge.
|
||||
</p>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org873fba3" class="outline-4">
|
||||
<h4 id="org873fba3"><span class="section-number-4">2.4.1</span> Get</h4>
|
||||
<div id="outline-container-org3d2e0f5" class="outline-4">
|
||||
<h4 id="org3d2e0f5"><span class="section-number-4">2.4.1</span> Get</h4>
|
||||
<div class="outline-text-4" id="text-2-4-1">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">qmckl_exit_code</span> <span style="color: #0000ff;">qmckl_get_electron_en_potential</span>(<span style="color: #228b22;">qmckl_context</span> <span style="color: #a0522d;">context</span>, <span style="color: #228b22;">double</span>* <span style="color: #a020f0;">const</span> <span style="color: #a0522d;">en_potential</span>);
|
||||
@ -1393,10 +1393,10 @@ distance and \[Z_A\] is the nuclear charge.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org8416a33" class="outline-4">
|
||||
<h4 id="org8416a33"><span class="section-number-4">2.4.2</span> Compute</h4>
|
||||
<div id="outline-container-org5038594" class="outline-4">
|
||||
<h4 id="org5038594"><span class="section-number-4">2.4.2</span> Compute</h4>
|
||||
<div class="outline-text-4" id="text-2-4-2">
|
||||
<table id="orge29ec6d" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="orga499498" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -1530,8 +1530,8 @@ distance and \[Z_A\] is the nuclear charge.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orga909f2d" class="outline-4">
|
||||
<h4 id="orga909f2d"><span class="section-number-4">2.4.3</span> Test</h4>
|
||||
<div id="outline-container-orgb6b32bd" class="outline-4">
|
||||
<h4 id="orgb6b32bd"><span class="section-number-4">2.4.3</span> Test</h4>
|
||||
<div class="outline-text-4" id="text-2-4-3">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">double</span> <span style="color: #a0522d;">en_potential</span>[walk_num];
|
||||
@ -1544,14 +1544,14 @@ rc = qmckl_get_electron_en_potential(context, &(en_potential[0]));
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgf0461e0" class="outline-3">
|
||||
<h3 id="orgf0461e0"><span class="section-number-3">2.5</span> Generate initial coordinates</h3>
|
||||
<div id="outline-container-org45e3716" class="outline-3">
|
||||
<h3 id="org45e3716"><span class="section-number-3">2.5</span> Generate initial coordinates</h3>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
<div id="postamble" class="status">
|
||||
<p class="author">Author: TREX CoE</p>
|
||||
<p class="date">Created: 2024-12-13 Fri 15:08</p>
|
||||
<p class="date">Created: 2024-12-13 Fri 15:44</p>
|
||||
<p class="validation"><a href="http://validator.w3.org/check?uri=referer">Validate</a></p>
|
||||
</div>
|
||||
</body>
|
||||
|
||||
@ -3,7 +3,7 @@
|
||||
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
|
||||
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
|
||||
<head>
|
||||
<!-- 2024-12-13 Fri 15:08 -->
|
||||
<!-- 2024-12-13 Fri 15:44 -->
|
||||
<meta http-equiv="Content-Type" content="text/html;charset=utf-8" />
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1" />
|
||||
<title>Error handling</title>
|
||||
@ -324,29 +324,29 @@ for the JavaScript code in this tag.
|
||||
<h2>Table of Contents</h2>
|
||||
<div id="text-table-of-contents">
|
||||
<ul>
|
||||
<li><a href="#org23c5215">-</a></li>
|
||||
<li><a href="#orgda64ef4">1. Decoding errors</a></li>
|
||||
<li><a href="#orga4637bb">2. Data structure in context</a></li>
|
||||
<li><a href="#org9b5be18">3. Updating errors in the context</a></li>
|
||||
<li><a href="#org64ecdfc">4. Get the error</a></li>
|
||||
<li><a href="#org4c06a6b">5. Failing</a></li>
|
||||
<li><a href="#org7d38b23">6. Last error</a>
|
||||
<li><a href="#orgf57f1c5">-</a></li>
|
||||
<li><a href="#orgfd281c3">1. Decoding errors</a></li>
|
||||
<li><a href="#orgaecf222">2. Data structure in context</a></li>
|
||||
<li><a href="#orga4b89d2">3. Updating errors in the context</a></li>
|
||||
<li><a href="#orgbe5ba98">4. Get the error</a></li>
|
||||
<li><a href="#org7fce99e">5. Failing</a></li>
|
||||
<li><a href="#org577196c">6. Last error</a>
|
||||
<ul>
|
||||
<li><a href="#org6d1a5bc">6.1. Fortran inteface</a></li>
|
||||
<li><a href="#org64b81c3">6.1. Fortran inteface</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#orgf316c49">7. Helper functions for debugging</a>
|
||||
<li><a href="#org15a8758">7. Helper functions for debugging</a>
|
||||
<ul>
|
||||
<li><a href="#org8da19cd">7.1. Fortran inteface</a></li>
|
||||
<li><a href="#org8bfa1dd">7.1. Fortran inteface</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org23c5215" class="outline-2">
|
||||
<h2 id="org23c5215">-</h2>
|
||||
<div class="outline-text-2" id="text-org23c5215">
|
||||
<div id="outline-container-orgf57f1c5" class="outline-2">
|
||||
<h2 id="orgf57f1c5">-</h2>
|
||||
<div class="outline-text-2" id="text-orgf57f1c5">
|
||||
<p>
|
||||
The library should never make the calling programs abort, nor
|
||||
perform any input/output operations. This decision has to be taken
|
||||
@ -357,7 +357,7 @@ by the developer of the code calling the library.
|
||||
All the functions return with an exit code, defined as
|
||||
</p>
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c" id="org983057c"><span style="color: #a020f0;">typedef</span> <span style="color: #228b22;">int32_t</span> <span style="color: #228b22;">qmckl_exit_code</span>;
|
||||
<pre class="src src-c" id="org0870149"><span style="color: #a020f0;">typedef</span> <span style="color: #228b22;">int32_t</span> <span style="color: #228b22;">qmckl_exit_code</span>;
|
||||
</pre>
|
||||
</div>
|
||||
|
||||
@ -374,7 +374,7 @@ error code is returned to the program.
|
||||
Here is the complete list of exit codes.
|
||||
</p>
|
||||
|
||||
<table id="org2b3ddcd" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="org813fafc" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -582,8 +582,8 @@ string is assumed to be large enough to contain the error message
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgda64ef4" class="outline-2">
|
||||
<h2 id="orgda64ef4"><span class="section-number-2">1</span> Decoding errors</h2>
|
||||
<div id="outline-container-orgfd281c3" class="outline-2">
|
||||
<h2 id="orgfd281c3"><span class="section-number-2">1</span> Decoding errors</h2>
|
||||
<div class="outline-text-2" id="text-1">
|
||||
<p>
|
||||
To decode the error messages, <code>qmckl_string_of_error</code> converts an
|
||||
@ -601,8 +601,8 @@ The text strings are extracted from the previous table.
|
||||
</p>
|
||||
</div>
|
||||
</div>
|
||||
<div id="outline-container-orga4637bb" class="outline-2">
|
||||
<h2 id="orga4637bb"><span class="section-number-2">2</span> Data structure in context</h2>
|
||||
<div id="outline-container-orgaecf222" class="outline-2">
|
||||
<h2 id="orgaecf222"><span class="section-number-2">2</span> Data structure in context</h2>
|
||||
<div class="outline-text-2" id="text-2">
|
||||
<p>
|
||||
The strings are declared internally with a maximum fixed size to avoid
|
||||
@ -625,8 +625,8 @@ dynamic memory allocation.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org9b5be18" class="outline-2">
|
||||
<h2 id="org9b5be18"><span class="section-number-2">3</span> Updating errors in the context</h2>
|
||||
<div id="outline-container-orga4b89d2" class="outline-2">
|
||||
<h2 id="orga4b89d2"><span class="section-number-2">3</span> Updating errors in the context</h2>
|
||||
<div class="outline-text-2" id="text-3">
|
||||
<p>
|
||||
The error is updated in the context using <code>qmckl_set_error</code>.
|
||||
@ -645,8 +645,8 @@ explaining the error. The exit code can't be <code>QMCKL_SUCCESS</code>.
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
<div id="outline-container-org64ecdfc" class="outline-2">
|
||||
<h2 id="org64ecdfc"><span class="section-number-2">4</span> Get the error</h2>
|
||||
<div id="outline-container-orgbe5ba98" class="outline-2">
|
||||
<h2 id="orgbe5ba98"><span class="section-number-2">4</span> Get the error</h2>
|
||||
<div class="outline-text-2" id="text-4">
|
||||
<p>
|
||||
Upon error, the error type and message can be obtained from the
|
||||
@ -665,8 +665,8 @@ function name and message is mandatory.
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
<div id="outline-container-org4c06a6b" class="outline-2">
|
||||
<h2 id="org4c06a6b"><span class="section-number-2">5</span> Failing</h2>
|
||||
<div id="outline-container-org7fce99e" class="outline-2">
|
||||
<h2 id="org7fce99e"><span class="section-number-2">5</span> Failing</h2>
|
||||
<div class="outline-text-2" id="text-5">
|
||||
<p>
|
||||
To make a function fail, the <code>qmckl_failwith</code> function should be
|
||||
@ -703,8 +703,8 @@ For example, this function can be used as
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org7d38b23" class="outline-2">
|
||||
<h2 id="org7d38b23"><span class="section-number-2">6</span> Last error</h2>
|
||||
<div id="outline-container-org577196c" class="outline-2">
|
||||
<h2 id="org577196c"><span class="section-number-2">6</span> Last error</h2>
|
||||
<div class="outline-text-2" id="text-6">
|
||||
<p>
|
||||
Returns a string describing the last error, using <code>qmckl_get_error</code>.
|
||||
@ -716,13 +716,13 @@ Returns a string describing the last error, using <code>qmckl_get_error</code>.
|
||||
</pre>
|
||||
</div>
|
||||
</div>
|
||||
<div id="outline-container-org6d1a5bc" class="outline-3">
|
||||
<h3 id="org6d1a5bc"><span class="section-number-3">6.1</span> Fortran inteface</h3>
|
||||
<div id="outline-container-org64b81c3" class="outline-3">
|
||||
<h3 id="org64b81c3"><span class="section-number-3">6.1</span> Fortran inteface</h3>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgf316c49" class="outline-2">
|
||||
<h2 id="orgf316c49"><span class="section-number-2">7</span> Helper functions for debugging</h2>
|
||||
<div id="outline-container-org15a8758" class="outline-2">
|
||||
<h2 id="org15a8758"><span class="section-number-2">7</span> Helper functions for debugging</h2>
|
||||
<div class="outline-text-2" id="text-7">
|
||||
<p>
|
||||
The following function prints to <code>stderr</code> an error message is the return code is
|
||||
@ -748,14 +748,14 @@ It should be used as:
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org8da19cd" class="outline-3">
|
||||
<h3 id="org8da19cd"><span class="section-number-3">7.1</span> Fortran inteface</h3>
|
||||
<div id="outline-container-org8bfa1dd" class="outline-3">
|
||||
<h3 id="org8bfa1dd"><span class="section-number-3">7.1</span> Fortran inteface</h3>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
<div id="postamble" class="status">
|
||||
<p class="author">Author: TREX CoE</p>
|
||||
<p class="date">Created: 2024-12-13 Fri 15:08</p>
|
||||
<p class="date">Created: 2024-12-13 Fri 15:44</p>
|
||||
<p class="validation"><a href="http://validator.w3.org/check?uri=referer">Validate</a></p>
|
||||
</div>
|
||||
</body>
|
||||
|
||||
@ -3,7 +3,7 @@
|
||||
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
|
||||
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
|
||||
<head>
|
||||
<!-- 2024-12-13 Fri 15:09 -->
|
||||
<!-- 2024-12-13 Fri 15:45 -->
|
||||
<meta http-equiv="Content-Type" content="text/html;charset=utf-8" />
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1" />
|
||||
<title>Code examples</title>
|
||||
@ -346,25 +346,25 @@ for the JavaScript code in this tag.
|
||||
<h2>Table of Contents</h2>
|
||||
<div id="text-table-of-contents">
|
||||
<ul>
|
||||
<li><a href="#orge7918d6">1. Overlap matrix in the MO basis</a>
|
||||
<li><a href="#orgbfe69e6">1. Overlap matrix in the MO basis</a>
|
||||
<ul>
|
||||
<li><a href="#orgdfc06a8">1.1. Python</a></li>
|
||||
<li><a href="#org82c469e">1.2. C</a></li>
|
||||
<li><a href="#org05230e4">1.3. Fortran</a></li>
|
||||
<li><a href="#org2576e1b">1.1. Python</a></li>
|
||||
<li><a href="#org2132151">1.2. C</a></li>
|
||||
<li><a href="#org9c96e1a">1.3. Fortran</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#orgc6165e9">2. Fortran</a>
|
||||
<li><a href="#org3c11a2d">2. Fortran</a>
|
||||
<ul>
|
||||
<li><a href="#orgfc7970a">2.1. Checking errors</a></li>
|
||||
<li><a href="#org1e87e70">2.2. Computing an atomic orbital on a grid</a></li>
|
||||
<li><a href="#org1857c4d">2.1. Checking errors</a></li>
|
||||
<li><a href="#org78821ed">2.2. Computing an atomic orbital on a grid</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orge7918d6" class="outline-2">
|
||||
<h2 id="orge7918d6"><span class="section-number-2">1</span> Overlap matrix in the MO basis</h2>
|
||||
<div id="outline-container-orgbfe69e6" class="outline-2">
|
||||
<h2 id="orgbfe69e6"><span class="section-number-2">1</span> Overlap matrix in the MO basis</h2>
|
||||
<div class="outline-text-2" id="text-1">
|
||||
<p>
|
||||
The focal point of this example is the numerical evaluation of the overlap
|
||||
@ -417,8 +417,8 @@ code.
|
||||
</p>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgdfc06a8" class="outline-3">
|
||||
<h3 id="orgdfc06a8"><span class="section-number-3">1.1</span> Python</h3>
|
||||
<div id="outline-container-org2576e1b" class="outline-3">
|
||||
<h3 id="org2576e1b"><span class="section-number-3">1.1</span> Python</h3>
|
||||
<div class="outline-text-3" id="text-1-1">
|
||||
<p>
|
||||
In this example, we will compute numerically the overlap
|
||||
@ -593,8 +593,8 @@ and finally we compute the overlap between all the MOs as
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org82c469e" class="outline-3">
|
||||
<h3 id="org82c469e"><span class="section-number-3">1.2</span> C</h3>
|
||||
<div id="outline-container-org2132151" class="outline-3">
|
||||
<h3 id="org2132151"><span class="section-number-3">1.2</span> C</h3>
|
||||
<div class="outline-text-3" id="text-1-2">
|
||||
<p>
|
||||
In this example, electron-nucleus cusp fitting is added.
|
||||
@ -922,8 +922,8 @@ and finally we compute the overlap between all the MOs as
|
||||
</div>
|
||||
|
||||
|
||||
<div id="outline-container-org05230e4" class="outline-3">
|
||||
<h3 id="org05230e4"><span class="section-number-3">1.3</span> Fortran</h3>
|
||||
<div id="outline-container-org9c96e1a" class="outline-3">
|
||||
<h3 id="org9c96e1a"><span class="section-number-3">1.3</span> Fortran</h3>
|
||||
<div class="outline-text-3" id="text-1-3">
|
||||
<p>
|
||||
Here is the same piece of code translated in Fortran
|
||||
@ -1099,12 +1099,12 @@ Here is the same piece of code translated in Fortran
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
<div id="outline-container-orgc6165e9" class="outline-2">
|
||||
<h2 id="orgc6165e9"><span class="section-number-2">2</span> Fortran</h2>
|
||||
<div id="outline-container-org3c11a2d" class="outline-2">
|
||||
<h2 id="org3c11a2d"><span class="section-number-2">2</span> Fortran</h2>
|
||||
<div class="outline-text-2" id="text-2">
|
||||
</div>
|
||||
<div id="outline-container-orgfc7970a" class="outline-3">
|
||||
<h3 id="orgfc7970a"><span class="section-number-3">2.1</span> Checking errors</h3>
|
||||
<div id="outline-container-org1857c4d" class="outline-3">
|
||||
<h3 id="org1857c4d"><span class="section-number-3">2.1</span> Checking errors</h3>
|
||||
<div class="outline-text-3" id="text-2-1">
|
||||
<p>
|
||||
All QMCkl functions return an error code. A convenient way to handle
|
||||
@ -1113,7 +1113,7 @@ error in text format and exits the program.
|
||||
</p>
|
||||
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-f90" id="org8d83146"><span style="color: #a020f0;">subroutine</span> <span style="color: #0000ff;">qmckl_check_error</span>(rc, message)
|
||||
<pre class="src src-f90" id="org6542333"><span style="color: #a020f0;">subroutine</span> <span style="color: #0000ff;">qmckl_check_error</span>(rc, message)
|
||||
<span style="color: #a020f0;">use</span> <span style="color: #0000ff;">qmckl</span>
|
||||
<span style="color: #a020f0;">implicit</span> <span style="color: #228b22;">none</span>
|
||||
<span style="color: #228b22;">integer</span>(qmckl_exit_code), <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> rc</span>
|
||||
@ -1131,8 +1131,8 @@ error in text format and exits the program.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org1e87e70" class="outline-3">
|
||||
<h3 id="org1e87e70"><span class="section-number-3">2.2</span> Computing an atomic orbital on a grid</h3>
|
||||
<div id="outline-container-org78821ed" class="outline-3">
|
||||
<h3 id="org78821ed"><span class="section-number-3">2.2</span> Computing an atomic orbital on a grid</h3>
|
||||
<div class="outline-text-3" id="text-2-2">
|
||||
<p>
|
||||
The following program, in Fortran, computes the values of an atomic
|
||||
@ -1351,7 +1351,7 @@ We finally print the value and Laplacian of the AO:
|
||||
</div>
|
||||
<div id="postamble" class="status">
|
||||
<p class="author">Author: TREX CoE</p>
|
||||
<p class="date">Created: 2024-12-13 Fri 15:09</p>
|
||||
<p class="date">Created: 2024-12-13 Fri 15:45</p>
|
||||
<p class="validation"><a href="http://validator.w3.org/check?uri=referer">Validate</a></p>
|
||||
</div>
|
||||
</body>
|
||||
|
||||
File diff suppressed because it is too large
Load Diff
@ -3,7 +3,7 @@
|
||||
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
|
||||
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
|
||||
<head>
|
||||
<!-- 2024-12-13 Fri 15:08 -->
|
||||
<!-- 2024-12-13 Fri 15:44 -->
|
||||
<meta http-equiv="Content-Type" content="text/html;charset=utf-8" />
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1" />
|
||||
<title>Local Energy</title>
|
||||
@ -346,44 +346,44 @@ for the JavaScript code in this tag.
|
||||
<h2>Table of Contents</h2>
|
||||
<div id="text-table-of-contents">
|
||||
<ul>
|
||||
<li><a href="#org76ad78e">1. Context</a>
|
||||
<li><a href="#org9c26334">1. Context</a>
|
||||
<ul>
|
||||
<li><a href="#org01a7736">1.1. Data structure</a></li>
|
||||
<li><a href="#org6875ab1">1.2. Access functions</a></li>
|
||||
<li><a href="#org8aa3a92">1.1. Data structure</a></li>
|
||||
<li><a href="#orgf23555e">1.2. Access functions</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#orgab1e6f6">2. Computation</a>
|
||||
<li><a href="#orge9ec148">2. Computation</a>
|
||||
<ul>
|
||||
<li><a href="#orgc9b3f30">2.1. Kinetic energy</a>
|
||||
<li><a href="#orga1a113c">2.1. Kinetic energy</a>
|
||||
<ul>
|
||||
<li><a href="#org4a7fb49">2.1.1. Get</a></li>
|
||||
<li><a href="#org98a7f09">2.1.2. Provide</a></li>
|
||||
<li><a href="#orgfd18286">2.1.3. Compute kinetic enregy</a></li>
|
||||
<li><a href="#org88c37d5">2.1.4. Test</a></li>
|
||||
<li><a href="#org014437c">2.1.1. Get</a></li>
|
||||
<li><a href="#orgbfa5011">2.1.2. Provide</a></li>
|
||||
<li><a href="#orgc26a2da">2.1.3. Compute kinetic enregy</a></li>
|
||||
<li><a href="#orga870098">2.1.4. Test</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#orgf96f579">2.2. Potential energy</a>
|
||||
<li><a href="#org630d335">2.2. Potential energy</a>
|
||||
<ul>
|
||||
<li><a href="#orgf025dcc">2.2.1. Get</a></li>
|
||||
<li><a href="#org57555e4">2.2.2. Provide</a></li>
|
||||
<li><a href="#org3c0141b">2.2.3. Compute potential enregy</a></li>
|
||||
<li><a href="#org22ffb63">2.2.4. Test</a></li>
|
||||
<li><a href="#org0718e6e">2.2.1. Get</a></li>
|
||||
<li><a href="#org5787f74">2.2.2. Provide</a></li>
|
||||
<li><a href="#org9ed8e30">2.2.3. Compute potential enregy</a></li>
|
||||
<li><a href="#org2ece01c">2.2.4. Test</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#org530d86b">2.3. Local energy</a>
|
||||
<li><a href="#org3be9c71">2.3. Local energy</a>
|
||||
<ul>
|
||||
<li><a href="#org34fcc96">2.3.1. Get</a></li>
|
||||
<li><a href="#org2bbffb5">2.3.2. Provide</a></li>
|
||||
<li><a href="#org88644a7">2.3.3. Compute local enregy</a></li>
|
||||
<li><a href="#org2880423">2.3.4. Test</a></li>
|
||||
<li><a href="#org0891ee9">2.3.1. Get</a></li>
|
||||
<li><a href="#org202c04b">2.3.2. Provide</a></li>
|
||||
<li><a href="#orge4c8e3b">2.3.3. Compute local enregy</a></li>
|
||||
<li><a href="#org295403b">2.3.4. Test</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#org96fbba8">2.4. Drift vector</a>
|
||||
<li><a href="#org5432f33">2.4. Drift vector</a>
|
||||
<ul>
|
||||
<li><a href="#orgfdafde4">2.4.1. Get</a></li>
|
||||
<li><a href="#orgbf75319">2.4.2. Provide</a></li>
|
||||
<li><a href="#org1457071">2.4.3. Compute drift vector</a></li>
|
||||
<li><a href="#org5c25afa">2.4.4. Test</a></li>
|
||||
<li><a href="#org48896bb">2.4.1. Get</a></li>
|
||||
<li><a href="#orgd22b9dc">2.4.2. Provide</a></li>
|
||||
<li><a href="#org65b78ae">2.4.3. Compute drift vector</a></li>
|
||||
<li><a href="#orgfbc3380">2.4.4. Test</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
@ -392,8 +392,8 @@ for the JavaScript code in this tag.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org76ad78e" class="outline-2">
|
||||
<h2 id="org76ad78e"><span class="section-number-2">1</span> Context</h2>
|
||||
<div id="outline-container-org9c26334" class="outline-2">
|
||||
<h2 id="org9c26334"><span class="section-number-2">1</span> Context</h2>
|
||||
<div class="outline-text-2" id="text-1">
|
||||
<p>
|
||||
The following arrays are stored in the context:
|
||||
@ -466,8 +466,8 @@ Computed data:
|
||||
</table>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org01a7736" class="outline-3">
|
||||
<h3 id="org01a7736"><span class="section-number-3">1.1</span> Data structure</h3>
|
||||
<div id="outline-container-org8aa3a92" class="outline-3">
|
||||
<h3 id="org8aa3a92"><span class="section-number-3">1.1</span> Data structure</h3>
|
||||
<div class="outline-text-3" id="text-1-1">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #a020f0;">typedef</span> <span style="color: #a020f0;">struct</span> <span style="color: #228b22;">qmckl_local_energy_struct</span> {
|
||||
@ -501,8 +501,8 @@ this mechanism.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org6875ab1" class="outline-3">
|
||||
<h3 id="org6875ab1"><span class="section-number-3">1.2</span> Access functions</h3>
|
||||
<div id="outline-container-orgf23555e" class="outline-3">
|
||||
<h3 id="orgf23555e"><span class="section-number-3">1.2</span> Access functions</h3>
|
||||
<div class="outline-text-3" id="text-1-2">
|
||||
<p>
|
||||
When all the data for the local energy have been provided, the following
|
||||
@ -517,12 +517,12 @@ function returns <code>true</code>.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgab1e6f6" class="outline-2">
|
||||
<h2 id="orgab1e6f6"><span class="section-number-2">2</span> Computation</h2>
|
||||
<div id="outline-container-orge9ec148" class="outline-2">
|
||||
<h2 id="orge9ec148"><span class="section-number-2">2</span> Computation</h2>
|
||||
<div class="outline-text-2" id="text-2">
|
||||
</div>
|
||||
<div id="outline-container-orgc9b3f30" class="outline-3">
|
||||
<h3 id="orgc9b3f30"><span class="section-number-3">2.1</span> Kinetic energy</h3>
|
||||
<div id="outline-container-orga1a113c" class="outline-3">
|
||||
<h3 id="orga1a113c"><span class="section-number-3">2.1</span> Kinetic energy</h3>
|
||||
<div class="outline-text-3" id="text-2-1">
|
||||
<p>
|
||||
Where the kinetic energy is given as:
|
||||
@ -546,8 +546,8 @@ case is given as follows:
|
||||
</p>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org4a7fb49" class="outline-4">
|
||||
<h4 id="org4a7fb49"><span class="section-number-4">2.1.1</span> Get</h4>
|
||||
<div id="outline-container-org014437c" class="outline-4">
|
||||
<h4 id="org014437c"><span class="section-number-4">2.1.1</span> Get</h4>
|
||||
<div class="outline-text-4" id="text-2-1-1">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">qmckl_exit_code</span> <span style="color: #0000ff;">qmckl_get_kinetic_energy</span>(<span style="color: #228b22;">qmckl_context</span> <span style="color: #a0522d;">context</span>, <span style="color: #228b22;">double</span>* <span style="color: #a020f0;">const</span> <span style="color: #a0522d;">kinetic_energy</span>);
|
||||
@ -556,14 +556,14 @@ case is given as follows:
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org98a7f09" class="outline-4">
|
||||
<h4 id="org98a7f09"><span class="section-number-4">2.1.2</span> Provide</h4>
|
||||
<div id="outline-container-orgbfa5011" class="outline-4">
|
||||
<h4 id="orgbfa5011"><span class="section-number-4">2.1.2</span> Provide</h4>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgfd18286" class="outline-4">
|
||||
<h4 id="orgfd18286"><span class="section-number-4">2.1.3</span> Compute kinetic enregy</h4>
|
||||
<div id="outline-container-orgc26a2da" class="outline-4">
|
||||
<h4 id="orgc26a2da"><span class="section-number-4">2.1.3</span> Compute kinetic enregy</h4>
|
||||
<div class="outline-text-4" id="text-2-1-3">
|
||||
<table id="org6ba2133" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="org2068927" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -792,12 +792,12 @@ case is given as follows:
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org88c37d5" class="outline-4">
|
||||
<h4 id="org88c37d5"><span class="section-number-4">2.1.4</span> Test</h4>
|
||||
<div id="outline-container-orga870098" class="outline-4">
|
||||
<h4 id="orga870098"><span class="section-number-4">2.1.4</span> Test</h4>
|
||||
</div>
|
||||
</div>
|
||||
<div id="outline-container-orgf96f579" class="outline-3">
|
||||
<h3 id="orgf96f579"><span class="section-number-3">2.2</span> Potential energy</h3>
|
||||
<div id="outline-container-org630d335" class="outline-3">
|
||||
<h3 id="org630d335"><span class="section-number-3">2.2</span> Potential energy</h3>
|
||||
<div class="outline-text-3" id="text-2-2">
|
||||
<p>
|
||||
The potential energy is the sum of all the following terms
|
||||
@ -833,8 +833,8 @@ contributions.
|
||||
</p>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgf025dcc" class="outline-4">
|
||||
<h4 id="orgf025dcc"><span class="section-number-4">2.2.1</span> Get</h4>
|
||||
<div id="outline-container-org0718e6e" class="outline-4">
|
||||
<h4 id="org0718e6e"><span class="section-number-4">2.2.1</span> Get</h4>
|
||||
<div class="outline-text-4" id="text-2-2-1">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">qmckl_exit_code</span> <span style="color: #0000ff;">qmckl_get_potential_energy</span>(<span style="color: #228b22;">qmckl_context</span> <span style="color: #a0522d;">context</span>, <span style="color: #228b22;">double</span>* <span style="color: #a020f0;">const</span> <span style="color: #a0522d;">potential_energy</span>);
|
||||
@ -843,14 +843,14 @@ contributions.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org57555e4" class="outline-4">
|
||||
<h4 id="org57555e4"><span class="section-number-4">2.2.2</span> Provide</h4>
|
||||
<div id="outline-container-org5787f74" class="outline-4">
|
||||
<h4 id="org5787f74"><span class="section-number-4">2.2.2</span> Provide</h4>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org3c0141b" class="outline-4">
|
||||
<h4 id="org3c0141b"><span class="section-number-4">2.2.3</span> Compute potential enregy</h4>
|
||||
<div id="outline-container-org9ed8e30" class="outline-4">
|
||||
<h4 id="org9ed8e30"><span class="section-number-4">2.2.3</span> Compute potential enregy</h4>
|
||||
<div class="outline-text-4" id="text-2-2-3">
|
||||
<table id="org29d4af8" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="orgea92be8" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -977,12 +977,12 @@ contributions.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org22ffb63" class="outline-4">
|
||||
<h4 id="org22ffb63"><span class="section-number-4">2.2.4</span> Test</h4>
|
||||
<div id="outline-container-org2ece01c" class="outline-4">
|
||||
<h4 id="org2ece01c"><span class="section-number-4">2.2.4</span> Test</h4>
|
||||
</div>
|
||||
</div>
|
||||
<div id="outline-container-org530d86b" class="outline-3">
|
||||
<h3 id="org530d86b"><span class="section-number-3">2.3</span> Local energy</h3>
|
||||
<div id="outline-container-org3be9c71" class="outline-3">
|
||||
<h3 id="org3be9c71"><span class="section-number-3">2.3</span> Local energy</h3>
|
||||
<div class="outline-text-3" id="text-2-3">
|
||||
<p>
|
||||
The local energy is the sum of kinetic and potential energies.
|
||||
@ -996,8 +996,8 @@ E_L = KE + PE
|
||||
</div>
|
||||
|
||||
|
||||
<div id="outline-container-org34fcc96" class="outline-4">
|
||||
<h4 id="org34fcc96"><span class="section-number-4">2.3.1</span> Get</h4>
|
||||
<div id="outline-container-org0891ee9" class="outline-4">
|
||||
<h4 id="org0891ee9"><span class="section-number-4">2.3.1</span> Get</h4>
|
||||
<div class="outline-text-4" id="text-2-3-1">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">qmckl_exit_code</span> <span style="color: #0000ff;">qmckl_get_local_energy</span>(<span style="color: #228b22;">qmckl_context</span> <span style="color: #a0522d;">context</span>, <span style="color: #228b22;">double</span>* <span style="color: #a020f0;">const</span> <span style="color: #a0522d;">local_energy</span>, <span style="color: #a020f0;">const</span> <span style="color: #228b22;">int64_t</span> <span style="color: #a0522d;">size_max</span>);
|
||||
@ -1006,14 +1006,14 @@ E_L = KE + PE
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org2bbffb5" class="outline-4">
|
||||
<h4 id="org2bbffb5"><span class="section-number-4">2.3.2</span> Provide</h4>
|
||||
<div id="outline-container-org202c04b" class="outline-4">
|
||||
<h4 id="org202c04b"><span class="section-number-4">2.3.2</span> Provide</h4>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org88644a7" class="outline-4">
|
||||
<h4 id="org88644a7"><span class="section-number-4">2.3.3</span> Compute local enregy</h4>
|
||||
<div id="outline-container-orge4c8e3b" class="outline-4">
|
||||
<h4 id="orge4c8e3b"><span class="section-number-4">2.3.3</span> Compute local enregy</h4>
|
||||
<div class="outline-text-4" id="text-2-3-3">
|
||||
<table id="org628dd3c" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="org50db23c" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -1109,12 +1109,12 @@ E_L = KE + PE
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org2880423" class="outline-4">
|
||||
<h4 id="org2880423"><span class="section-number-4">2.3.4</span> Test</h4>
|
||||
<div id="outline-container-org295403b" class="outline-4">
|
||||
<h4 id="org295403b"><span class="section-number-4">2.3.4</span> Test</h4>
|
||||
</div>
|
||||
</div>
|
||||
<div id="outline-container-org96fbba8" class="outline-3">
|
||||
<h3 id="org96fbba8"><span class="section-number-3">2.4</span> Drift vector</h3>
|
||||
<div id="outline-container-org5432f33" class="outline-3">
|
||||
<h3 id="org5432f33"><span class="section-number-3">2.4</span> Drift vector</h3>
|
||||
<div class="outline-text-3" id="text-2-4">
|
||||
<p>
|
||||
The drift vector is calculated as the ration of the gradient
|
||||
@ -1128,8 +1128,8 @@ with the determinant of the wavefunction.
|
||||
</p>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgfdafde4" class="outline-4">
|
||||
<h4 id="orgfdafde4"><span class="section-number-4">2.4.1</span> Get</h4>
|
||||
<div id="outline-container-org48896bb" class="outline-4">
|
||||
<h4 id="org48896bb"><span class="section-number-4">2.4.1</span> Get</h4>
|
||||
<div class="outline-text-4" id="text-2-4-1">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">qmckl_exit_code</span> <span style="color: #0000ff;">qmckl_get_drift_vector</span>(<span style="color: #228b22;">qmckl_context</span> <span style="color: #a0522d;">context</span>, <span style="color: #228b22;">double</span>* <span style="color: #a020f0;">const</span> <span style="color: #a0522d;">drift_vector</span>);
|
||||
@ -1138,14 +1138,14 @@ with the determinant of the wavefunction.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgbf75319" class="outline-4">
|
||||
<h4 id="orgbf75319"><span class="section-number-4">2.4.2</span> Provide</h4>
|
||||
<div id="outline-container-orgd22b9dc" class="outline-4">
|
||||
<h4 id="orgd22b9dc"><span class="section-number-4">2.4.2</span> Provide</h4>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org1457071" class="outline-4">
|
||||
<h4 id="org1457071"><span class="section-number-4">2.4.3</span> Compute drift vector</h4>
|
||||
<div id="outline-container-org65b78ae" class="outline-4">
|
||||
<h4 id="org65b78ae"><span class="section-number-4">2.4.3</span> Compute drift vector</h4>
|
||||
<div class="outline-text-4" id="text-2-4-3">
|
||||
<table id="org04eddfa" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="org0d1c9d2" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -1366,15 +1366,15 @@ with the determinant of the wavefunction.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org5c25afa" class="outline-4">
|
||||
<h4 id="org5c25afa"><span class="section-number-4">2.4.4</span> Test</h4>
|
||||
<div id="outline-container-orgfbc3380" class="outline-4">
|
||||
<h4 id="orgfbc3380"><span class="section-number-4">2.4.4</span> Test</h4>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
<div id="postamble" class="status">
|
||||
<p class="author">Author: TREX CoE</p>
|
||||
<p class="date">Created: 2024-12-13 Fri 15:08</p>
|
||||
<p class="date">Created: 2024-12-13 Fri 15:44</p>
|
||||
<p class="validation"><a href="http://validator.w3.org/check?uri=referer">Validate</a></p>
|
||||
</div>
|
||||
</body>
|
||||
|
||||
@ -3,7 +3,7 @@
|
||||
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
|
||||
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
|
||||
<head>
|
||||
<!-- 2024-12-13 Fri 15:09 -->
|
||||
<!-- 2024-12-13 Fri 15:45 -->
|
||||
<meta http-equiv="Content-Type" content="text/html;charset=utf-8" />
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1" />
|
||||
<title>Memory management</title>
|
||||
@ -324,16 +324,16 @@ for the JavaScript code in this tag.
|
||||
<h2>Table of Contents</h2>
|
||||
<div id="text-table-of-contents">
|
||||
<ul>
|
||||
<li><a href="#org94a1d05">1. Memory data structure for the context</a></li>
|
||||
<li><a href="#org57123a0">2. Passing info to allocation routines</a></li>
|
||||
<li><a href="#org08aa746">3. Allocation/deallocation functions</a></li>
|
||||
<li><a href="#org440142e">4. Get the size of a memory block</a></li>
|
||||
<li><a href="#orgd434147">1. Memory data structure for the context</a></li>
|
||||
<li><a href="#orge43b4ce">2. Passing info to allocation routines</a></li>
|
||||
<li><a href="#orgc3e2df4">3. Allocation/deallocation functions</a></li>
|
||||
<li><a href="#org58b15ab">4. Get the size of a memory block</a></li>
|
||||
</ul>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org94a1d05" class="outline-2">
|
||||
<h2 id="org94a1d05"><span class="section-number-2">1</span> Memory data structure for the context</h2>
|
||||
<div id="outline-container-orgd434147" class="outline-2">
|
||||
<h2 id="orgd434147"><span class="section-number-2">1</span> Memory data structure for the context</h2>
|
||||
<div class="outline-text-2" id="text-1">
|
||||
<p>
|
||||
Every time a new block of memory is allocated, the information
|
||||
@ -375,8 +375,8 @@ array, and the number of allocated blocks.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org57123a0" class="outline-2">
|
||||
<h2 id="org57123a0"><span class="section-number-2">2</span> Passing info to allocation routines</h2>
|
||||
<div id="outline-container-orge43b4ce" class="outline-2">
|
||||
<h2 id="orge43b4ce"><span class="section-number-2">2</span> Passing info to allocation routines</h2>
|
||||
<div class="outline-text-2" id="text-2">
|
||||
<p>
|
||||
Passing information to the allocation routine should be done by
|
||||
@ -385,8 +385,8 @@ passing an instance of a <code>qmckl_memory_info_struct</code>.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org08aa746" class="outline-2">
|
||||
<h2 id="org08aa746"><span class="section-number-2">3</span> Allocation/deallocation functions</h2>
|
||||
<div id="outline-container-orgc3e2df4" class="outline-2">
|
||||
<h2 id="orgc3e2df4"><span class="section-number-2">3</span> Allocation/deallocation functions</h2>
|
||||
<div class="outline-text-2" id="text-3">
|
||||
<p>
|
||||
Memory allocation inside the library should be done with
|
||||
@ -645,8 +645,8 @@ successful deallocation of the memory block.</li>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
<div id="outline-container-org440142e" class="outline-2">
|
||||
<h2 id="org440142e"><span class="section-number-2">4</span> Get the size of a memory block</h2>
|
||||
<div id="outline-container-org58b15ab" class="outline-2">
|
||||
<h2 id="org58b15ab"><span class="section-number-2">4</span> Get the size of a memory block</h2>
|
||||
<div class="outline-text-2" id="text-4">
|
||||
<p>
|
||||
All the blocks allocated with <code>qmckl_malloc</code> keep track of how many
|
||||
@ -741,7 +741,7 @@ rc = qmckl_context_destroy(context);
|
||||
</div>
|
||||
<div id="postamble" class="status">
|
||||
<p class="author">Author: TREX CoE</p>
|
||||
<p class="date">Created: 2024-12-13 Fri 15:09</p>
|
||||
<p class="date">Created: 2024-12-13 Fri 15:45</p>
|
||||
<p class="validation"><a href="http://validator.w3.org/check?uri=referer">Validate</a></p>
|
||||
</div>
|
||||
</body>
|
||||
|
||||
192
qmckl_mo.html
192
qmckl_mo.html
@ -3,7 +3,7 @@
|
||||
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
|
||||
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
|
||||
<head>
|
||||
<!-- 2024-12-13 Fri 15:09 -->
|
||||
<!-- 2024-12-13 Fri 15:45 -->
|
||||
<meta http-equiv="Content-Type" content="text/html;charset=utf-8" />
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1" />
|
||||
<title>Molecular Orbitals</title>
|
||||
@ -346,72 +346,72 @@ for the JavaScript code in this tag.
|
||||
<h2>Table of Contents</h2>
|
||||
<div id="text-table-of-contents">
|
||||
<ul>
|
||||
<li><a href="#org4552064">1. Context</a>
|
||||
<li><a href="#org945582a">1. Context</a>
|
||||
<ul>
|
||||
<li><a href="#orgac0c30b">1.1. Data structure</a></li>
|
||||
<li><a href="#org1d4a2d9">1.2. Initialization functions</a></li>
|
||||
<li><a href="#orgcbb79df">1.3. Cusp adjsutment functions</a></li>
|
||||
<li><a href="#orgc5b5159">1.4. Access functions</a>
|
||||
<li><a href="#org488dd1e">1.1. Data structure</a></li>
|
||||
<li><a href="#orge6618d6">1.2. Initialization functions</a></li>
|
||||
<li><a href="#org4ae7da4">1.3. Cusp adjsutment functions</a></li>
|
||||
<li><a href="#orgc0a1266">1.4. Access functions</a>
|
||||
<ul>
|
||||
<li><a href="#org7c503cf">1.4.1. Fortran interfaces</a></li>
|
||||
<li><a href="#orge8cde84">1.4.1. Fortran interfaces</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#org179760c">1.5. Update</a>
|
||||
<li><a href="#org7eb5742">1.5. Update</a>
|
||||
<ul>
|
||||
<li><a href="#org60a963e">1.5.1. Fortran interface</a></li>
|
||||
<li><a href="#orgf6bc2e0">1.5.1. Fortran interface</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#org195a40a">2. Computation</a>
|
||||
<li><a href="#org93e041b">2. Computation</a>
|
||||
<ul>
|
||||
<li><a href="#orgd096c2c">2.1. Parameters of the cusp-correction functions</a></li>
|
||||
<li><a href="#orgb39676d">2.2. Computation of MOs: values only</a>
|
||||
<li><a href="#orgb7fc36a">2.1. Parameters of the cusp-correction functions</a></li>
|
||||
<li><a href="#org6585ca3">2.2. Computation of MOs: values only</a>
|
||||
<ul>
|
||||
<li><a href="#orge2c5fd6">2.2.1. Get</a></li>
|
||||
<li><a href="#orgbb2cebc">2.2.2. Provide</a></li>
|
||||
<li><a href="#orgdd4ab50">2.2.3. Compute</a></li>
|
||||
<li><a href="#org90f5678">2.2.4. HPC version</a>
|
||||
<li><a href="#org948386c">2.2.1. Get</a></li>
|
||||
<li><a href="#org56cf0c1">2.2.2. Provide</a></li>
|
||||
<li><a href="#org6293d0b">2.2.3. Compute</a></li>
|
||||
<li><a href="#orgb3a3027">2.2.4. HPC version</a>
|
||||
<ul>
|
||||
<li><a href="#org26e1450">2.2.4.1. Single-precision</a></li>
|
||||
<li><a href="#orga28b0f2">2.2.4.2. Double-precision</a></li>
|
||||
<li><a href="#org53a86ea">2.2.4.1. Single-precision</a></li>
|
||||
<li><a href="#org75e0b78">2.2.4.2. Double-precision</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#orgd8f94a4">2.3. Computation of MOs: values, gradient, Laplacian</a>
|
||||
<li><a href="#org5d16c23">2.3. Computation of MOs: values, gradient, Laplacian</a>
|
||||
<ul>
|
||||
<li><a href="#org8321d06">2.3.1. Get</a></li>
|
||||
<li><a href="#orgfc017af">2.3.2. Provide</a></li>
|
||||
<li><a href="#orgf72eefd">2.3.3. Compute</a></li>
|
||||
<li><a href="#org6da792e">2.3.1. Get</a></li>
|
||||
<li><a href="#org1abeacb">2.3.2. Provide</a></li>
|
||||
<li><a href="#org46fa64c">2.3.3. Compute</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#org88ba43f">2.4. Computation of cusp-corrected MOs: values only</a>
|
||||
<li><a href="#orgc21bb37">2.4. Computation of cusp-corrected MOs: values only</a>
|
||||
<ul>
|
||||
<li><a href="#orgf36357d">2.4.1. Compute</a></li>
|
||||
<li><a href="#org347128b">2.4.2. HPC version</a></li>
|
||||
<li><a href="#org5116fab">2.4.1. Compute</a></li>
|
||||
<li><a href="#org2d201f3">2.4.2. HPC version</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#org74ebe5a">2.5. Computation of cusp-corrected MOs: values, gradient, Laplacian</a>
|
||||
<li><a href="#org8d9d1a8">2.5. Computation of cusp-corrected MOs: values, gradient, Laplacian</a>
|
||||
<ul>
|
||||
<li><a href="#org3a88091">2.5.1. Compute</a></li>
|
||||
<li><a href="#org3f0c811">2.5.2. HPC version</a></li>
|
||||
<li><a href="#orga000aec">2.5.1. Compute</a></li>
|
||||
<li><a href="#org45d4c0c">2.5.2. HPC version</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#org0076ad7">2.6. Rescaling of MO coefficients</a>
|
||||
<li><a href="#org617bd2a">2.6. Rescaling of MO coefficients</a>
|
||||
<ul>
|
||||
<li><a href="#orgfd5508f">2.6.1. Fortran interface</a></li>
|
||||
<li><a href="#org158e82c">2.6.1. Fortran interface</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#org3a18473">2.7. Test</a></li>
|
||||
<li><a href="#orgf319ed0">2.7. Test</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org4552064" class="outline-2">
|
||||
<h2 id="org4552064"><span class="section-number-2">1</span> Context</h2>
|
||||
<div id="outline-container-org945582a" class="outline-2">
|
||||
<h2 id="org945582a"><span class="section-number-2">1</span> Context</h2>
|
||||
<div class="outline-text-2" id="text-1">
|
||||
<p>
|
||||
The following arrays are stored in the context:
|
||||
@ -490,8 +490,8 @@ Computed data:
|
||||
</table>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgac0c30b" class="outline-3">
|
||||
<h3 id="orgac0c30b"><span class="section-number-3">1.1</span> Data structure</h3>
|
||||
<div id="outline-container-org488dd1e" class="outline-3">
|
||||
<h3 id="org488dd1e"><span class="section-number-3">1.1</span> Data structure</h3>
|
||||
<div class="outline-text-3" id="text-1-1">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #a020f0;">typedef</span> <span style="color: #a020f0;">struct</span> <span style="color: #228b22;">qmckl_mo_basis_struct</span> {
|
||||
@ -548,8 +548,8 @@ this mechanism.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org1d4a2d9" class="outline-3">
|
||||
<h3 id="org1d4a2d9"><span class="section-number-3">1.2</span> Initialization functions</h3>
|
||||
<div id="outline-container-orge6618d6" class="outline-3">
|
||||
<h3 id="orge6618d6"><span class="section-number-3">1.2</span> Initialization functions</h3>
|
||||
<div class="outline-text-3" id="text-1-2">
|
||||
<p>
|
||||
To set the basis set, all the following functions need to be
|
||||
@ -570,8 +570,8 @@ computed to accelerate the calculations.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgcbb79df" class="outline-3">
|
||||
<h3 id="orgcbb79df"><span class="section-number-3">1.3</span> Cusp adjsutment functions</h3>
|
||||
<div id="outline-container-org4ae7da4" class="outline-3">
|
||||
<h3 id="org4ae7da4"><span class="section-number-3">1.3</span> Cusp adjsutment functions</h3>
|
||||
<div class="outline-text-3" id="text-1-3">
|
||||
<p>
|
||||
To activate the cusp adjustment, the user must enter the radius of
|
||||
@ -586,8 +586,8 @@ of the non-\(s\) AOs at the center.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgc5b5159" class="outline-3">
|
||||
<h3 id="orgc5b5159"><span class="section-number-3">1.4</span> Access functions</h3>
|
||||
<div id="outline-container-orgc0a1266" class="outline-3">
|
||||
<h3 id="orgc0a1266"><span class="section-number-3">1.4</span> Access functions</h3>
|
||||
<div class="outline-text-3" id="text-1-4">
|
||||
<p>
|
||||
When all the data for the AOs have been provided, the following
|
||||
@ -600,13 +600,13 @@ function returns <code>true</code>.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org7c503cf" class="outline-4">
|
||||
<h4 id="org7c503cf"><span class="section-number-4">1.4.1</span> Fortran interfaces</h4>
|
||||
<div id="outline-container-orge8cde84" class="outline-4">
|
||||
<h4 id="orge8cde84"><span class="section-number-4">1.4.1</span> Fortran interfaces</h4>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org179760c" class="outline-3">
|
||||
<h3 id="org179760c"><span class="section-number-3">1.5</span> Update</h3>
|
||||
<div id="outline-container-org7eb5742" class="outline-3">
|
||||
<h3 id="org7eb5742"><span class="section-number-3">1.5</span> Update</h3>
|
||||
<div class="outline-text-3" id="text-1-5">
|
||||
<p>
|
||||
It may be desirable to remove certain molecular orbitals (MOs) that
|
||||
@ -633,25 +633,25 @@ calculation. If the integer is non-zero, the MO will be kept.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org60a963e" class="outline-4">
|
||||
<h4 id="org60a963e"><span class="section-number-4">1.5.1</span> Fortran interface</h4>
|
||||
<div id="outline-container-orgf6bc2e0" class="outline-4">
|
||||
<h4 id="orgf6bc2e0"><span class="section-number-4">1.5.1</span> Fortran interface</h4>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org195a40a" class="outline-2">
|
||||
<h2 id="org195a40a"><span class="section-number-2">2</span> Computation</h2>
|
||||
<div id="outline-container-org93e041b" class="outline-2">
|
||||
<h2 id="org93e041b"><span class="section-number-2">2</span> Computation</h2>
|
||||
<div class="outline-text-2" id="text-2">
|
||||
</div>
|
||||
<div id="outline-container-orgd096c2c" class="outline-3">
|
||||
<h3 id="orgd096c2c"><span class="section-number-3">2.1</span> Parameters of the cusp-correction functions</h3>
|
||||
<div id="outline-container-orgb7fc36a" class="outline-3">
|
||||
<h3 id="orgb7fc36a"><span class="section-number-3">2.1</span> Parameters of the cusp-correction functions</h3>
|
||||
</div>
|
||||
<div id="outline-container-orgb39676d" class="outline-3">
|
||||
<h3 id="orgb39676d"><span class="section-number-3">2.2</span> Computation of MOs: values only</h3>
|
||||
<div id="outline-container-org6585ca3" class="outline-3">
|
||||
<h3 id="org6585ca3"><span class="section-number-3">2.2</span> Computation of MOs: values only</h3>
|
||||
<div class="outline-text-3" id="text-2-2">
|
||||
</div>
|
||||
<div id="outline-container-orge2c5fd6" class="outline-4">
|
||||
<h4 id="orge2c5fd6"><span class="section-number-4">2.2.1</span> Get</h4>
|
||||
<div id="outline-container-org948386c" class="outline-4">
|
||||
<h4 id="org948386c"><span class="section-number-4">2.2.1</span> Get</h4>
|
||||
<div class="outline-text-4" id="text-2-2-1">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">qmckl_exit_code</span>
|
||||
@ -675,8 +675,8 @@ Uses the given array to compute the values.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgbb2cebc" class="outline-4">
|
||||
<h4 id="orgbb2cebc"><span class="section-number-4">2.2.2</span> Provide</h4>
|
||||
<div id="outline-container-org56cf0c1" class="outline-4">
|
||||
<h4 id="org56cf0c1"><span class="section-number-4">2.2.2</span> Provide</h4>
|
||||
<div class="outline-text-4" id="text-2-2-2">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">qmckl_exit_code</span> <span style="color: #0000ff;">qmckl_provide_mo_basis_mo_value</span>(<span style="color: #228b22;">qmckl_context</span> <span style="color: #a0522d;">context</span>);
|
||||
@ -761,10 +761,10 @@ Uses the given array to compute the values.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgdd4ab50" class="outline-4">
|
||||
<h4 id="orgdd4ab50"><span class="section-number-4">2.2.3</span> Compute</h4>
|
||||
<div id="outline-container-org6293d0b" class="outline-4">
|
||||
<h4 id="org6293d0b"><span class="section-number-4">2.2.3</span> Compute</h4>
|
||||
<div class="outline-text-4" id="text-2-2-3">
|
||||
<table id="org157ab9a" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="orgf59cba5" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -919,8 +919,8 @@ matrix multiplication instead of a dgemm, as exposed in
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org90f5678" class="outline-4">
|
||||
<h4 id="org90f5678"><span class="section-number-4">2.2.4</span> HPC version</h4>
|
||||
<div id="outline-container-orgb3a3027" class="outline-4">
|
||||
<h4 id="orgb3a3027"><span class="section-number-4">2.2.4</span> HPC version</h4>
|
||||
<div class="outline-text-4" id="text-2-2-4">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #483d8b;">#ifdef</span> HAVE_HPC
|
||||
@ -947,8 +947,8 @@ matrix multiplication instead of a dgemm, as exposed in
|
||||
</div>
|
||||
|
||||
|
||||
<div id="outline-container-org26e1450" class="outline-5">
|
||||
<h5 id="org26e1450"><span class="section-number-5">2.2.4.1</span> Single-precision</h5>
|
||||
<div id="outline-container-org53a86ea" class="outline-5">
|
||||
<h5 id="org53a86ea"><span class="section-number-5">2.2.4.1</span> Single-precision</h5>
|
||||
<div class="outline-text-5" id="text-2-2-4-1">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #483d8b;">#ifdef</span> HAVE_HPC
|
||||
@ -1069,8 +1069,8 @@ matrix multiplication instead of a dgemm, as exposed in
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orga28b0f2" class="outline-5">
|
||||
<h5 id="orga28b0f2"><span class="section-number-5">2.2.4.2</span> Double-precision</h5>
|
||||
<div id="outline-container-org75e0b78" class="outline-5">
|
||||
<h5 id="org75e0b78"><span class="section-number-5">2.2.4.2</span> Double-precision</h5>
|
||||
<div class="outline-text-5" id="text-2-2-4-2">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #483d8b;">#ifdef</span> HAVE_HPC
|
||||
@ -1187,12 +1187,12 @@ matrix multiplication instead of a dgemm, as exposed in
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgd8f94a4" class="outline-3">
|
||||
<h3 id="orgd8f94a4"><span class="section-number-3">2.3</span> Computation of MOs: values, gradient, Laplacian</h3>
|
||||
<div id="outline-container-org5d16c23" class="outline-3">
|
||||
<h3 id="org5d16c23"><span class="section-number-3">2.3</span> Computation of MOs: values, gradient, Laplacian</h3>
|
||||
<div class="outline-text-3" id="text-2-3">
|
||||
</div>
|
||||
<div id="outline-container-org8321d06" class="outline-4">
|
||||
<h4 id="org8321d06"><span class="section-number-4">2.3.1</span> Get</h4>
|
||||
<div id="outline-container-org6da792e" class="outline-4">
|
||||
<h4 id="org6da792e"><span class="section-number-4">2.3.1</span> Get</h4>
|
||||
<div class="outline-text-4" id="text-2-3-1">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">qmckl_exit_code</span>
|
||||
@ -1216,8 +1216,8 @@ Uses the given array to compute the VGL.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgfc017af" class="outline-4">
|
||||
<h4 id="orgfc017af"><span class="section-number-4">2.3.2</span> Provide</h4>
|
||||
<div id="outline-container-org1abeacb" class="outline-4">
|
||||
<h4 id="org1abeacb"><span class="section-number-4">2.3.2</span> Provide</h4>
|
||||
<div class="outline-text-4" id="text-2-3-2">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">qmckl_exit_code</span> <span style="color: #0000ff;">qmckl_provide_mo_basis_mo_vgl</span>(<span style="color: #228b22;">qmckl_context</span> <span style="color: #a0522d;">context</span>);
|
||||
@ -1301,10 +1301,10 @@ Uses the given array to compute the VGL.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgf72eefd" class="outline-4">
|
||||
<h4 id="orgf72eefd"><span class="section-number-4">2.3.3</span> Compute</h4>
|
||||
<div id="outline-container-org46fa64c" class="outline-4">
|
||||
<h4 id="org46fa64c"><span class="section-number-4">2.3.3</span> Compute</h4>
|
||||
<div class="outline-text-4" id="text-2-3-3">
|
||||
<table id="org7ca8a06" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="org59580fe" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -1473,14 +1473,14 @@ matrix multiplication instead of a dgemm, as exposed in
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org88ba43f" class="outline-3">
|
||||
<h3 id="org88ba43f"><span class="section-number-3">2.4</span> Computation of cusp-corrected MOs: values only</h3>
|
||||
<div id="outline-container-orgc21bb37" class="outline-3">
|
||||
<h3 id="orgc21bb37"><span class="section-number-3">2.4</span> Computation of cusp-corrected MOs: values only</h3>
|
||||
<div class="outline-text-3" id="text-2-4">
|
||||
</div>
|
||||
<div id="outline-container-orgf36357d" class="outline-4">
|
||||
<h4 id="orgf36357d"><span class="section-number-4">2.4.1</span> Compute</h4>
|
||||
<div id="outline-container-org5116fab" class="outline-4">
|
||||
<h4 id="org5116fab"><span class="section-number-4">2.4.1</span> Compute</h4>
|
||||
<div class="outline-text-4" id="text-2-4-1">
|
||||
<table id="org4f2e093" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="org05a4ea0" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -1719,8 +1719,8 @@ matrix multiplication instead of a dgemm, as exposed in
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org347128b" class="outline-4">
|
||||
<h4 id="org347128b"><span class="section-number-4">2.4.2</span> HPC version</h4>
|
||||
<div id="outline-container-org2d201f3" class="outline-4">
|
||||
<h4 id="org2d201f3"><span class="section-number-4">2.4.2</span> HPC version</h4>
|
||||
<div class="outline-text-4" id="text-2-4-2">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #483d8b;">#ifdef</span> HAVE_HPC
|
||||
@ -1858,14 +1858,14 @@ IVDEP
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org74ebe5a" class="outline-3">
|
||||
<h3 id="org74ebe5a"><span class="section-number-3">2.5</span> Computation of cusp-corrected MOs: values, gradient, Laplacian</h3>
|
||||
<div id="outline-container-org8d9d1a8" class="outline-3">
|
||||
<h3 id="org8d9d1a8"><span class="section-number-3">2.5</span> Computation of cusp-corrected MOs: values, gradient, Laplacian</h3>
|
||||
<div class="outline-text-3" id="text-2-5">
|
||||
</div>
|
||||
<div id="outline-container-org3a88091" class="outline-4">
|
||||
<h4 id="org3a88091"><span class="section-number-4">2.5.1</span> Compute</h4>
|
||||
<div id="outline-container-orga000aec" class="outline-4">
|
||||
<h4 id="orga000aec"><span class="section-number-4">2.5.1</span> Compute</h4>
|
||||
<div class="outline-text-4" id="text-2-5-1">
|
||||
<table id="orgbba5ff6" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="orgd5c2ac5" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -2165,8 +2165,8 @@ IVDEP
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org3f0c811" class="outline-4">
|
||||
<h4 id="org3f0c811"><span class="section-number-4">2.5.2</span> HPC version</h4>
|
||||
<div id="outline-container-org45d4c0c" class="outline-4">
|
||||
<h4 id="org45d4c0c"><span class="section-number-4">2.5.2</span> HPC version</h4>
|
||||
<div class="outline-text-4" id="text-2-5-2">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #483d8b;">#ifdef</span> HAVE_HPC
|
||||
@ -2365,8 +2365,8 @@ IVDEP
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org0076ad7" class="outline-3">
|
||||
<h3 id="org0076ad7"><span class="section-number-3">2.6</span> Rescaling of MO coefficients</h3>
|
||||
<div id="outline-container-org617bd2a" class="outline-3">
|
||||
<h3 id="org617bd2a"><span class="section-number-3">2.6</span> Rescaling of MO coefficients</h3>
|
||||
<div class="outline-text-3" id="text-2-6">
|
||||
<p>
|
||||
When evaluating Slater determinants, the value of the determinants
|
||||
@ -2383,19 +2383,19 @@ correct range.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgfd5508f" class="outline-4">
|
||||
<h4 id="orgfd5508f"><span class="section-number-4">2.6.1</span> Fortran interface</h4>
|
||||
<div id="outline-container-org158e82c" class="outline-4">
|
||||
<h4 id="org158e82c"><span class="section-number-4">2.6.1</span> Fortran interface</h4>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org3a18473" class="outline-3">
|
||||
<h3 id="org3a18473"><span class="section-number-3">2.7</span> Test</h3>
|
||||
<div id="outline-container-orgf319ed0" class="outline-3">
|
||||
<h3 id="orgf319ed0"><span class="section-number-3">2.7</span> Test</h3>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
<div id="postamble" class="status">
|
||||
<p class="author">Author: TREX CoE</p>
|
||||
<p class="date">Created: 2024-12-13 Fri 15:09</p>
|
||||
<p class="date">Created: 2024-12-13 Fri 15:45</p>
|
||||
<p class="validation"><a href="http://validator.w3.org/check?uri=referer">Validate</a></p>
|
||||
</div>
|
||||
</body>
|
||||
|
||||
@ -3,7 +3,7 @@
|
||||
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
|
||||
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
|
||||
<head>
|
||||
<!-- 2024-12-13 Fri 15:09 -->
|
||||
<!-- 2024-12-13 Fri 15:44 -->
|
||||
<meta http-equiv="Content-Type" content="text/html;charset=utf-8" />
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1" />
|
||||
<title>Nucleus</title>
|
||||
@ -346,28 +346,28 @@ for the JavaScript code in this tag.
|
||||
<h2>Table of Contents</h2>
|
||||
<div id="text-table-of-contents">
|
||||
<ul>
|
||||
<li><a href="#orgeb2a136">1. Context</a>
|
||||
<li><a href="#org2066e2b">1. Context</a>
|
||||
<ul>
|
||||
<li><a href="#org3188e7b">1.1. Data structure</a></li>
|
||||
<li><a href="#org203bb7f">1.2. Access functions</a></li>
|
||||
<li><a href="#orga9f1369">1.3. Initialization functions</a></li>
|
||||
<li><a href="#org721ef57">1.4. Test</a></li>
|
||||
<li><a href="#org26f9011">1.1. Data structure</a></li>
|
||||
<li><a href="#orgb52d708">1.2. Access functions</a></li>
|
||||
<li><a href="#org4f979a0">1.3. Initialization functions</a></li>
|
||||
<li><a href="#orge33b5e0">1.4. Test</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#orgf4c392b">2. Computation</a>
|
||||
<li><a href="#org90801b7">2. Computation</a>
|
||||
<ul>
|
||||
<li><a href="#orgdd920ec">2.1. Nucleus-nucleus distances</a>
|
||||
<li><a href="#org82afc92">2.1. Nucleus-nucleus distances</a>
|
||||
<ul>
|
||||
<li><a href="#orgee8dcce">2.1.1. Get</a></li>
|
||||
<li><a href="#org19aff9b">2.1.2. Compute</a></li>
|
||||
<li><a href="#org94d0bb0">2.1.3. Test</a></li>
|
||||
<li><a href="#orgfe4302b">2.1.1. Get</a></li>
|
||||
<li><a href="#org7b81029">2.1.2. Compute</a></li>
|
||||
<li><a href="#orgb0c4ddc">2.1.3. Test</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#org87b5560">2.2. Nuclear repulsion energy</a>
|
||||
<li><a href="#org9646fc8">2.2. Nuclear repulsion energy</a>
|
||||
<ul>
|
||||
<li><a href="#orge7de238">2.2.1. Get</a></li>
|
||||
<li><a href="#org4bd0f3c">2.2.2. Compute</a></li>
|
||||
<li><a href="#org5768080">2.2.3. Test</a></li>
|
||||
<li><a href="#org539f60c">2.2.1. Get</a></li>
|
||||
<li><a href="#org2b6a1c0">2.2.2. Compute</a></li>
|
||||
<li><a href="#orga752e8b">2.2.3. Test</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
@ -376,8 +376,8 @@ for the JavaScript code in this tag.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgeb2a136" class="outline-2">
|
||||
<h2 id="orgeb2a136"><span class="section-number-2">1</span> Context</h2>
|
||||
<div id="outline-container-org2066e2b" class="outline-2">
|
||||
<h2 id="org2066e2b"><span class="section-number-2">1</span> Context</h2>
|
||||
<div class="outline-text-2" id="text-1">
|
||||
<p>
|
||||
The following data stored in the context:
|
||||
@ -474,8 +474,8 @@ Computed data:
|
||||
</table>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org3188e7b" class="outline-3">
|
||||
<h3 id="org3188e7b"><span class="section-number-3">1.1</span> Data structure</h3>
|
||||
<div id="outline-container-org26f9011" class="outline-3">
|
||||
<h3 id="org26f9011"><span class="section-number-3">1.1</span> Data structure</h3>
|
||||
<div class="outline-text-3" id="text-1-1">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #a020f0;">typedef</span> <span style="color: #a020f0;">struct</span> <span style="color: #228b22;">qmckl_nucleus_struct</span> {
|
||||
@ -529,8 +529,8 @@ this mechanism.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org203bb7f" class="outline-3">
|
||||
<h3 id="org203bb7f"><span class="section-number-3">1.2</span> Access functions</h3>
|
||||
<div id="outline-container-orgb52d708" class="outline-3">
|
||||
<h3 id="orgb52d708"><span class="section-number-3">1.2</span> Access functions</h3>
|
||||
<div class="outline-text-3" id="text-1-2">
|
||||
<p>
|
||||
When all the data relative to nuclei have been set, the following
|
||||
@ -544,8 +544,8 @@ function returns <code>true</code>.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orga9f1369" class="outline-3">
|
||||
<h3 id="orga9f1369"><span class="section-number-3">1.3</span> Initialization functions</h3>
|
||||
<div id="outline-container-org4f979a0" class="outline-3">
|
||||
<h3 id="org4f979a0"><span class="section-number-3">1.3</span> Initialization functions</h3>
|
||||
<div class="outline-text-3" id="text-1-3">
|
||||
<p>
|
||||
To set the data relative to the nuclei in the context, the
|
||||
@ -591,8 +591,8 @@ are be given in atomic units.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org721ef57" class="outline-3">
|
||||
<h3 id="org721ef57"><span class="section-number-3">1.4</span> Test</h3>
|
||||
<div id="outline-container-orge33b5e0" class="outline-3">
|
||||
<h3 id="orge33b5e0"><span class="section-number-3">1.4</span> Test</h3>
|
||||
<div class="outline-text-3" id="text-1-4">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #a020f0;">const</span> <span style="color: #228b22;">double</span>* <span style="color: #a0522d;">nucl_charge</span> = chbrclf_charge;
|
||||
@ -661,8 +661,8 @@ rc = qmckl_get_nucleus_charge(context, nucl_charge2, chbrclf_nucl_num);
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgf4c392b" class="outline-2">
|
||||
<h2 id="orgf4c392b"><span class="section-number-2">2</span> Computation</h2>
|
||||
<div id="outline-container-org90801b7" class="outline-2">
|
||||
<h2 id="org90801b7"><span class="section-number-2">2</span> Computation</h2>
|
||||
<div class="outline-text-2" id="text-2">
|
||||
<p>
|
||||
The computed data is stored in the context so that it can be reused
|
||||
@ -675,12 +675,12 @@ current date is stored.
|
||||
</p>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgdd920ec" class="outline-3">
|
||||
<h3 id="orgdd920ec"><span class="section-number-3">2.1</span> Nucleus-nucleus distances</h3>
|
||||
<div id="outline-container-org82afc92" class="outline-3">
|
||||
<h3 id="org82afc92"><span class="section-number-3">2.1</span> Nucleus-nucleus distances</h3>
|
||||
<div class="outline-text-3" id="text-2-1">
|
||||
</div>
|
||||
<div id="outline-container-orgee8dcce" class="outline-4">
|
||||
<h4 id="orgee8dcce"><span class="section-number-4">2.1.1</span> Get</h4>
|
||||
<div id="outline-container-orgfe4302b" class="outline-4">
|
||||
<h4 id="orgfe4302b"><span class="section-number-4">2.1.1</span> Get</h4>
|
||||
<div class="outline-text-4" id="text-2-1-1">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">qmckl_exit_code</span>
|
||||
@ -692,10 +692,10 @@ current date is stored.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org19aff9b" class="outline-4">
|
||||
<h4 id="org19aff9b"><span class="section-number-4">2.1.2</span> Compute</h4>
|
||||
<div id="outline-container-org7b81029" class="outline-4">
|
||||
<h4 id="org7b81029"><span class="section-number-4">2.1.2</span> Compute</h4>
|
||||
<div class="outline-text-4" id="text-2-1-2">
|
||||
<table id="org1024a6f" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="org22ea0d6" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -773,8 +773,8 @@ current date is stored.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org94d0bb0" class="outline-4">
|
||||
<h4 id="org94d0bb0"><span class="section-number-4">2.1.3</span> Test</h4>
|
||||
<div id="outline-container-orgb0c4ddc" class="outline-4">
|
||||
<h4 id="orgb0c4ddc"><span class="section-number-4">2.1.3</span> Test</h4>
|
||||
<div class="outline-text-4" id="text-2-1-3">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c">/* <span style="color: #b22222;">Reference input data</span> */
|
||||
@ -793,8 +793,8 @@ rc = qmckl_get_nucleus_nn_distance(context, distance, chbrclf_nucl_num*chbrclf_n
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org87b5560" class="outline-3">
|
||||
<h3 id="org87b5560"><span class="section-number-3">2.2</span> Nuclear repulsion energy</h3>
|
||||
<div id="outline-container-org9646fc8" class="outline-3">
|
||||
<h3 id="org9646fc8"><span class="section-number-3">2.2</span> Nuclear repulsion energy</h3>
|
||||
<div class="outline-text-3" id="text-2-2">
|
||||
<p>
|
||||
\[
|
||||
@ -803,8 +803,8 @@ rc = qmckl_get_nucleus_nn_distance(context, distance, chbrclf_nucl_num*chbrclf_n
|
||||
</p>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orge7de238" class="outline-4">
|
||||
<h4 id="orge7de238"><span class="section-number-4">2.2.1</span> Get</h4>
|
||||
<div id="outline-container-org539f60c" class="outline-4">
|
||||
<h4 id="org539f60c"><span class="section-number-4">2.2.1</span> Get</h4>
|
||||
<div class="outline-text-4" id="text-2-2-1">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">qmckl_exit_code</span> <span style="color: #0000ff;">qmckl_get_nucleus_repulsion</span>(<span style="color: #228b22;">qmckl_context</span> <span style="color: #a0522d;">context</span>, <span style="color: #228b22;">double</span>* <span style="color: #a020f0;">const</span> <span style="color: #a0522d;">energy</span>);
|
||||
@ -813,10 +813,10 @@ rc = qmckl_get_nucleus_nn_distance(context, distance, chbrclf_nucl_num*chbrclf_n
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org4bd0f3c" class="outline-4">
|
||||
<h4 id="org4bd0f3c"><span class="section-number-4">2.2.2</span> Compute</h4>
|
||||
<div id="outline-container-org2b6a1c0" class="outline-4">
|
||||
<h4 id="org2b6a1c0"><span class="section-number-4">2.2.2</span> Compute</h4>
|
||||
<div class="outline-text-4" id="text-2-2-2">
|
||||
<table id="orgfaf1d71" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="orgf07c175" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -906,8 +906,8 @@ rc = qmckl_get_nucleus_nn_distance(context, distance, chbrclf_nucl_num*chbrclf_n
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org5768080" class="outline-4">
|
||||
<h4 id="org5768080"><span class="section-number-4">2.2.3</span> Test</h4>
|
||||
<div id="outline-container-orga752e8b" class="outline-4">
|
||||
<h4 id="orga752e8b"><span class="section-number-4">2.2.3</span> Test</h4>
|
||||
<div class="outline-text-4" id="text-2-2-3">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c">/* <span style="color: #b22222;">Reference input data</span> */
|
||||
@ -927,7 +927,7 @@ rc = qmckl_get_nucleus_repulsion(context, &rep);
|
||||
</div>
|
||||
<div id="postamble" class="status">
|
||||
<p class="author">Author: TREX CoE</p>
|
||||
<p class="date">Created: 2024-12-13 Fri 15:09</p>
|
||||
<p class="date">Created: 2024-12-13 Fri 15:44</p>
|
||||
<p class="validation"><a href="http://validator.w3.org/check?uri=referer">Validate</a></p>
|
||||
</div>
|
||||
</body>
|
||||
|
||||
@ -3,7 +3,7 @@
|
||||
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
|
||||
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
|
||||
<head>
|
||||
<!-- 2024-12-13 Fri 15:08 -->
|
||||
<!-- 2024-12-13 Fri 15:44 -->
|
||||
<meta http-equiv="Content-Type" content="text/html;charset=utf-8" />
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1" />
|
||||
<title>‎</title>
|
||||
@ -345,18 +345,18 @@ for the JavaScript code in this tag.
|
||||
<h2>Table of Contents</h2>
|
||||
<div id="text-table-of-contents">
|
||||
<ul>
|
||||
<li><a href="#org04dca0b">1. Control of the numerical precision</a></li>
|
||||
<li><a href="#org6538b70">2. Precision</a></li>
|
||||
<li><a href="#org70f3ab1">3. Range</a></li>
|
||||
<li><a href="#org84917dd">4. Helper functions</a>
|
||||
<li><a href="#org80709d5">1. Control of the numerical precision</a></li>
|
||||
<li><a href="#orgaad49f6">2. Precision</a></li>
|
||||
<li><a href="#org6cac8f4">3. Range</a></li>
|
||||
<li><a href="#orgfed47b8">4. Helper functions</a>
|
||||
<ul>
|
||||
<li><a href="#org7b2da5d">4.1. Epsilon</a></li>
|
||||
<li><a href="#org6f3c44e">4.2. Testing the number of unchanged bits</a></li>
|
||||
<li><a href="#orgde5bde7">4.1. Epsilon</a></li>
|
||||
<li><a href="#orgcfc5f0b">4.2. Testing the number of unchanged bits</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#org0a698bc">5. Approximate functions</a>
|
||||
<li><a href="#orge4934c9">5. Approximate functions</a>
|
||||
<ul>
|
||||
<li><a href="#org8ae8eb4">5.1. Exponential</a></li>
|
||||
<li><a href="#org01a2d86">5.1. Exponential</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
@ -366,8 +366,8 @@ for the JavaScript code in this tag.
|
||||
3+TITLE: Numerical precision
|
||||
</p>
|
||||
|
||||
<div id="outline-container-org04dca0b" class="outline-2">
|
||||
<h2 id="org04dca0b"><span class="section-number-2">1</span> Control of the numerical precision</h2>
|
||||
<div id="outline-container-org80709d5" class="outline-2">
|
||||
<h2 id="org80709d5"><span class="section-number-2">1</span> Control of the numerical precision</h2>
|
||||
<div class="outline-text-2" id="text-1">
|
||||
<p>
|
||||
Controlling numerical precision enables optimizations. Here, the
|
||||
@ -378,7 +378,7 @@ Arithmetic (IEEE 754),
|
||||
sign bit) and <i>range</i> refers to the number of exponent bits.
|
||||
</p>
|
||||
|
||||
<table id="orgee471c8" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="org62b04b5" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -422,8 +422,8 @@ integer. The update functions return <code>QMCKL_SUCCESS</code> or
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org6538b70" class="outline-2">
|
||||
<h2 id="org6538b70"><span class="section-number-2">2</span> Precision</h2>
|
||||
<div id="outline-container-orgaad49f6" class="outline-2">
|
||||
<h2 id="orgaad49f6"><span class="section-number-2">2</span> Precision</h2>
|
||||
<div class="outline-text-2" id="text-2">
|
||||
<p>
|
||||
<code>qmckl_context_set_numprec_precision</code> modifies the parameter for the
|
||||
@ -510,8 +510,8 @@ numerical precision in the context.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org70f3ab1" class="outline-2">
|
||||
<h2 id="org70f3ab1"><span class="section-number-2">3</span> Range</h2>
|
||||
<div id="outline-container-org6cac8f4" class="outline-2">
|
||||
<h2 id="org6cac8f4"><span class="section-number-2">3</span> Range</h2>
|
||||
<div class="outline-text-2" id="text-3">
|
||||
<p>
|
||||
<code>qmckl_set_numprec_range</code> modifies the parameter for the numerical
|
||||
@ -586,12 +586,12 @@ range in a given context.
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
<div id="outline-container-org84917dd" class="outline-2">
|
||||
<h2 id="org84917dd"><span class="section-number-2">4</span> Helper functions</h2>
|
||||
<div id="outline-container-orgfed47b8" class="outline-2">
|
||||
<h2 id="orgfed47b8"><span class="section-number-2">4</span> Helper functions</h2>
|
||||
<div class="outline-text-2" id="text-4">
|
||||
</div>
|
||||
<div id="outline-container-org7b2da5d" class="outline-3">
|
||||
<h3 id="org7b2da5d"><span class="section-number-3">4.1</span> Epsilon</h3>
|
||||
<div id="outline-container-orgde5bde7" class="outline-3">
|
||||
<h3 id="orgde5bde7"><span class="section-number-3">4.1</span> Epsilon</h3>
|
||||
<div class="outline-text-3" id="text-4-1">
|
||||
<p>
|
||||
<code>qmckl_get_numprec_epsilon</code> returns \(\epsilon = 2^{1-n}\) where <code>n</code> is the precision.
|
||||
@ -610,8 +610,8 @@ We need to remove the sign bit from the precision.
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
<div id="outline-container-org6f3c44e" class="outline-3">
|
||||
<h3 id="org6f3c44e"><span class="section-number-3">4.2</span> Testing the number of unchanged bits</h3>
|
||||
<div id="outline-container-orgcfc5f0b" class="outline-3">
|
||||
<h3 id="orgcfc5f0b"><span class="section-number-3">4.2</span> Testing the number of unchanged bits</h3>
|
||||
<div class="outline-text-3" id="text-4-2">
|
||||
<p>
|
||||
To test that a given approximation keeps a given number of bits
|
||||
@ -681,12 +681,12 @@ numbers differ.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org0a698bc" class="outline-2">
|
||||
<h2 id="org0a698bc"><span class="section-number-2">5</span> Approximate functions</h2>
|
||||
<div id="outline-container-orge4934c9" class="outline-2">
|
||||
<h2 id="orge4934c9"><span class="section-number-2">5</span> Approximate functions</h2>
|
||||
<div class="outline-text-2" id="text-5">
|
||||
</div>
|
||||
<div id="outline-container-org8ae8eb4" class="outline-3">
|
||||
<h3 id="org8ae8eb4"><span class="section-number-3">5.1</span> Exponential</h3>
|
||||
<div id="outline-container-org01a2d86" class="outline-3">
|
||||
<h3 id="org01a2d86"><span class="section-number-3">5.1</span> Exponential</h3>
|
||||
<div class="outline-text-3" id="text-5-1">
|
||||
<p>
|
||||
Fast exponential function, adapted from Johan Rade's implementation
|
||||
@ -741,7 +741,7 @@ N. Schraudolph, "A Fast, Compact Approximation of the Exponential Function",
|
||||
</div>
|
||||
<div id="postamble" class="status">
|
||||
<p class="author">Author: TREX CoE</p>
|
||||
<p class="date">Created: 2024-12-13 Fri 15:08</p>
|
||||
<p class="date">Created: 2024-12-13 Fri 15:44</p>
|
||||
<p class="validation"><a href="http://validator.w3.org/check?uri=referer">Validate</a></p>
|
||||
</div>
|
||||
</body>
|
||||
|
||||
@ -3,7 +3,7 @@
|
||||
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
|
||||
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
|
||||
<head>
|
||||
<!-- 2024-12-13 Fri 15:08 -->
|
||||
<!-- 2024-12-13 Fri 15:44 -->
|
||||
<meta http-equiv="Content-Type" content="text/html;charset=utf-8" />
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1" />
|
||||
<title>Point</title>
|
||||
@ -346,25 +346,25 @@ for the JavaScript code in this tag.
|
||||
<h2>Table of Contents</h2>
|
||||
<div id="text-table-of-contents">
|
||||
<ul>
|
||||
<li><a href="#org07dd279">1. Context</a>
|
||||
<li><a href="#org3d4b63a">1. Context</a>
|
||||
<ul>
|
||||
<li><a href="#orge5f2517">1.1. Data structure</a></li>
|
||||
<li><a href="#orgf7e964b">1.2. Access functions</a>
|
||||
<li><a href="#org5a8adf4">1.1. Data structure</a></li>
|
||||
<li><a href="#orgc3e4cde">1.2. Access functions</a>
|
||||
<ul>
|
||||
<li><a href="#org0dc4023">1.2.1. Number of points</a></li>
|
||||
<li><a href="#org1520081">1.2.2. Point coordinates</a></li>
|
||||
<li><a href="#org9aa7518">1.2.1. Number of points</a></li>
|
||||
<li><a href="#orgd6cbed9">1.2.2. Point coordinates</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#org2e89076">1.3. Initialization functions</a></li>
|
||||
<li><a href="#org3f3e6f8">1.4. Test</a></li>
|
||||
<li><a href="#orgc283166">1.3. Initialization functions</a></li>
|
||||
<li><a href="#org4cb3119">1.4. Test</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org07dd279" class="outline-2">
|
||||
<h2 id="org07dd279"><span class="section-number-2">1</span> Context</h2>
|
||||
<div id="outline-container-org3d4b63a" class="outline-2">
|
||||
<h2 id="org3d4b63a"><span class="section-number-2">1</span> Context</h2>
|
||||
<div class="outline-text-2" id="text-1">
|
||||
<p>
|
||||
The following data stored in the context:
|
||||
@ -414,8 +414,8 @@ corresponds to the 3 × <code>num</code> matrix.
|
||||
</p>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orge5f2517" class="outline-3">
|
||||
<h3 id="orge5f2517"><span class="section-number-3">1.1</span> Data structure</h3>
|
||||
<div id="outline-container-org5a8adf4" class="outline-3">
|
||||
<h3 id="org5a8adf4"><span class="section-number-3">1.1</span> Data structure</h3>
|
||||
<div class="outline-text-3" id="text-1-1">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #a020f0;">typedef</span> <span style="color: #a020f0;">struct</span> <span style="color: #228b22;">qmckl_point_struct</span> {
|
||||
@ -451,8 +451,8 @@ corresponds to the 3 × <code>num</code> matrix.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgf7e964b" class="outline-3">
|
||||
<h3 id="orgf7e964b"><span class="section-number-3">1.2</span> Access functions</h3>
|
||||
<div id="outline-container-orgc3e4cde" class="outline-3">
|
||||
<h3 id="orgc3e4cde"><span class="section-number-3">1.2</span> Access functions</h3>
|
||||
<div class="outline-text-3" id="text-1-2">
|
||||
<p>
|
||||
Access functions return <code>QMCKL_SUCCESS</code> when the data has been
|
||||
@ -463,8 +463,8 @@ contains the requested data. Otherwise, this variable is untouched.
|
||||
</p>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org0dc4023" class="outline-4">
|
||||
<h4 id="org0dc4023"><span class="section-number-4">1.2.1</span> Number of points</h4>
|
||||
<div id="outline-container-org9aa7518" class="outline-4">
|
||||
<h4 id="org9aa7518"><span class="section-number-4">1.2.1</span> Number of points</h4>
|
||||
<div class="outline-text-4" id="text-1-2-1">
|
||||
<p>
|
||||
Returns the number of points stored in the context.
|
||||
@ -486,8 +486,8 @@ Returns the number of points stored in the context.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org1520081" class="outline-4">
|
||||
<h4 id="org1520081"><span class="section-number-4">1.2.2</span> Point coordinates</h4>
|
||||
<div id="outline-container-orgd6cbed9" class="outline-4">
|
||||
<h4 id="orgd6cbed9"><span class="section-number-4">1.2.2</span> Point coordinates</h4>
|
||||
<div class="outline-text-4" id="text-1-2-2">
|
||||
<p>
|
||||
Returns the point coordinates as sequences of (x,y,z).
|
||||
@ -515,8 +515,8 @@ The pointer is assumed to point on a memory block of size
|
||||
</div>
|
||||
|
||||
|
||||
<div id="outline-container-org2e89076" class="outline-3">
|
||||
<h3 id="org2e89076"><span class="section-number-3">1.3</span> Initialization functions</h3>
|
||||
<div id="outline-container-orgc283166" class="outline-3">
|
||||
<h3 id="orgc283166"><span class="section-number-3">1.3</span> Initialization functions</h3>
|
||||
<div class="outline-text-3" id="text-1-3">
|
||||
<p>
|
||||
When the data is set in the context, if the arrays are large
|
||||
@ -655,8 +655,8 @@ Copy a sequence of <code>num</code> points \((x,y,z)\) into the context.
|
||||
</div>
|
||||
|
||||
|
||||
<div id="outline-container-org3f3e6f8" class="outline-3">
|
||||
<h3 id="org3f3e6f8"><span class="section-number-3">1.4</span> Test</h3>
|
||||
<div id="outline-container-org4cb3119" class="outline-3">
|
||||
<h3 id="org4cb3119"><span class="section-number-3">1.4</span> Test</h3>
|
||||
<div class="outline-text-3" id="text-1-4">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c">/* <span style="color: #b22222;">Reference input data</span> */
|
||||
@ -715,7 +715,7 @@ rc = qmckl_get_point (context, <span style="color: #8b2252;">'N'</span>, coord3,
|
||||
</div>
|
||||
<div id="postamble" class="status">
|
||||
<p class="author">Author: TREX CoE</p>
|
||||
<p class="date">Created: 2024-12-13 Fri 15:08</p>
|
||||
<p class="date">Created: 2024-12-13 Fri 15:44</p>
|
||||
<p class="validation"><a href="http://validator.w3.org/check?uri=referer">Validate</a></p>
|
||||
</div>
|
||||
</body>
|
||||
|
||||
@ -3,7 +3,7 @@
|
||||
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
|
||||
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
|
||||
<head>
|
||||
<!-- 2024-12-13 Fri 15:09 -->
|
||||
<!-- 2024-12-13 Fri 15:45 -->
|
||||
<meta http-equiv="Content-Type" content="text/html;charset=utf-8" />
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1" />
|
||||
<title>Sherman-Morrison-Woodbury</title>
|
||||
@ -346,118 +346,118 @@ for the JavaScript code in this tag.
|
||||
<h2>Table of Contents</h2>
|
||||
<div id="text-table-of-contents">
|
||||
<ul>
|
||||
<li><a href="#org6d7f814">1. Headers</a></li>
|
||||
<li><a href="#orgd8d400e">2. Naïve Sherman-Morrison</a>
|
||||
<li><a href="#orgdcd3626">1. Headers</a></li>
|
||||
<li><a href="#org395f8a2">2. Naïve Sherman-Morrison</a>
|
||||
<ul>
|
||||
<li><a href="#org9d1cfb7">2.1. <code>qmckl_sm_naive</code></a>
|
||||
<li><a href="#org3a560a4">2.1. <code>qmckl_sm_naive</code></a>
|
||||
<ul>
|
||||
<li><a href="#org2542ecc">2.1.1. Introduction</a></li>
|
||||
<li><a href="#org07abcea">2.1.2. API</a></li>
|
||||
<li><a href="#org82ceff6">2.1.3. Requirements</a></li>
|
||||
<li><a href="#org3ad6bf9">2.1.4. Pedagogical kernel source (in Fortran)</a>
|
||||
<li><a href="#orge737a47">2.1.1. Introduction</a></li>
|
||||
<li><a href="#orgff8fd0a">2.1.2. API</a></li>
|
||||
<li><a href="#orga0073cf">2.1.3. Requirements</a></li>
|
||||
<li><a href="#org8655bee">2.1.4. Pedagogical kernel source (in Fortran)</a>
|
||||
<ul>
|
||||
<li><a href="#org0976738">2.1.4.1. C interface (not directly exposed)</a></li>
|
||||
<li><a href="#org60fa75d">2.1.4.1. C interface (not directly exposed)</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#org43cf801">2.1.5. C headers (exposed in qmckl.h)</a></li>
|
||||
<li><a href="#orgc515a94">2.1.6. C sources</a></li>
|
||||
<li><a href="#orga31d2c2">2.1.7. Fortran interfaces (exposed in qmckl<sub>f.F90</sub>)</a></li>
|
||||
<li><a href="#orgd1496a0">2.1.8. Performance</a></li>
|
||||
<li><a href="#org2f73f3a">2.1.9. Tests</a></li>
|
||||
<li><a href="#orgdcc65d8">2.1.5. C headers (exposed in qmckl.h)</a></li>
|
||||
<li><a href="#org4f467ce">2.1.6. C sources</a></li>
|
||||
<li><a href="#org85f1814">2.1.7. Fortran interfaces (exposed in qmckl<sub>f.F90</sub>)</a></li>
|
||||
<li><a href="#orgb2166ea">2.1.8. Performance</a></li>
|
||||
<li><a href="#org528dc47">2.1.9. Tests</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#org73280c7">3. Sherman-Morrison with Slagel Splitting (core)</a>
|
||||
<li><a href="#org926b53b">3. Sherman-Morrison with Slagel Splitting (core)</a>
|
||||
<ul>
|
||||
<li><a href="#org061671c">3.1. <code>qmckl_sm_splitting_core</code></a>
|
||||
<li><a href="#org41a68ed">3.1. <code>qmckl_sm_splitting_core</code></a>
|
||||
<ul>
|
||||
<li><a href="#orgaa19840">3.1.1. Introduction</a></li>
|
||||
<li><a href="#org4a4f327">3.1.2. API</a></li>
|
||||
<li><a href="#orgfa87110">3.1.3. Requirements</a></li>
|
||||
<li><a href="#org8d5b4bb">3.1.4. Pedagogical kernel source (in Fortran)</a>
|
||||
<li><a href="#org8f32ea1">3.1.1. Introduction</a></li>
|
||||
<li><a href="#orgd9d8039">3.1.2. API</a></li>
|
||||
<li><a href="#org11809f5">3.1.3. Requirements</a></li>
|
||||
<li><a href="#org860ab35">3.1.4. Pedagogical kernel source (in Fortran)</a>
|
||||
<ul>
|
||||
<li><a href="#orga8090a9">3.1.4.1. C interface to the pedagogical kernel (not directly exposed)</a></li>
|
||||
<li><a href="#orgab20ded">3.1.4.1. C interface to the pedagogical kernel (not directly exposed)</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#org745ce95">3.1.5. C headers (exposed in qmckl.h)</a></li>
|
||||
<li><a href="#org6232260">3.1.6. C sources</a></li>
|
||||
<li><a href="#org31a0e26">3.1.7. Fortran interfaces (exposed in qmckl<sub>f.F90</sub>)</a></li>
|
||||
<li><a href="#org14f19c8">3.1.8. Performance</a></li>
|
||||
<li><a href="#orgfc1da9a">3.1.5. C headers (exposed in qmckl.h)</a></li>
|
||||
<li><a href="#org1ad1be5">3.1.6. C sources</a></li>
|
||||
<li><a href="#orgc29d784">3.1.7. Fortran interfaces (exposed in qmckl<sub>f.F90</sub>)</a></li>
|
||||
<li><a href="#org6d89768">3.1.8. Performance</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#org41a80c1">4. Woodbury 2x2</a>
|
||||
<li><a href="#org906fb0a">4. Woodbury 2x2</a>
|
||||
<ul>
|
||||
<li><a href="#org4560e0b">4.1. <code>qmckl_woodbury_2x2</code></a>
|
||||
<li><a href="#org1565a53">4.1. <code>qmckl_woodbury_2x2</code></a>
|
||||
<ul>
|
||||
<li><a href="#org01daccd">4.1.1. Introduction</a></li>
|
||||
<li><a href="#org829547c">4.1.2. API</a></li>
|
||||
<li><a href="#orga131210">4.1.3. Requirements</a></li>
|
||||
<li><a href="#org67c051c">4.1.4. Pedagogical kernel source (in Fortran)</a>
|
||||
<li><a href="#orge53ac67">4.1.1. Introduction</a></li>
|
||||
<li><a href="#org2e02f13">4.1.2. API</a></li>
|
||||
<li><a href="#org4be1658">4.1.3. Requirements</a></li>
|
||||
<li><a href="#org8b56845">4.1.4. Pedagogical kernel source (in Fortran)</a>
|
||||
<ul>
|
||||
<li><a href="#orgc2d1cec">4.1.4.1. C interface (not directly exposed)</a></li>
|
||||
<li><a href="#org94693c6">4.1.4.1. C interface (not directly exposed)</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#org3fd5f42">4.1.5. C headers (exposed in qmckl.h)</a></li>
|
||||
<li><a href="#org94224d7">4.1.6. C sources</a></li>
|
||||
<li><a href="#orgf384caf">4.1.7. Fortran interfaces (exposed in qmckl<sub>f.F90</sub>)</a></li>
|
||||
<li><a href="#orgd589a90">4.1.8. Performance</a></li>
|
||||
<li><a href="#org4e3f48a">4.1.9. Tests</a></li>
|
||||
<li><a href="#org2b22859">4.1.5. C headers (exposed in qmckl.h)</a></li>
|
||||
<li><a href="#org90682f9">4.1.6. C sources</a></li>
|
||||
<li><a href="#org9647030">4.1.7. Fortran interfaces (exposed in qmckl<sub>f.F90</sub>)</a></li>
|
||||
<li><a href="#org437cef3">4.1.8. Performance</a></li>
|
||||
<li><a href="#orgc4ee906">4.1.9. Tests</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#org9885d47">5. Woodbury 3x3</a>
|
||||
<li><a href="#org0281010">5. Woodbury 3x3</a>
|
||||
<ul>
|
||||
<li><a href="#org47583a1">5.1. <code>qmckl_woodbury_3x3</code></a>
|
||||
<li><a href="#org2b58dab">5.1. <code>qmckl_woodbury_3x3</code></a>
|
||||
<ul>
|
||||
<li><a href="#org5d6d8a6">5.1.1. Introduction</a></li>
|
||||
<li><a href="#org8f50a8e">5.1.2. API</a></li>
|
||||
<li><a href="#org5f3a556">5.1.3. Requirements</a></li>
|
||||
<li><a href="#orge3a815a">5.1.4. Pedagogical kernel source (in Fortran)</a>
|
||||
<li><a href="#org7afbe2a">5.1.1. Introduction</a></li>
|
||||
<li><a href="#org26f3275">5.1.2. API</a></li>
|
||||
<li><a href="#org5b76fa3">5.1.3. Requirements</a></li>
|
||||
<li><a href="#org0ed42a7">5.1.4. Pedagogical kernel source (in Fortran)</a>
|
||||
<ul>
|
||||
<li><a href="#org452dfc0">5.1.4.1. C interface (not directly exposed)</a></li>
|
||||
<li><a href="#orgf1269af">5.1.4.1. C interface (not directly exposed)</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#org691392d">5.1.5. C headers (exposed in qmckl.h)</a></li>
|
||||
<li><a href="#org80779a1">5.1.6. C sources</a></li>
|
||||
<li><a href="#orgdc1e708">5.1.7. Fortran interfaces (exposed in qmckl<sub>f.F90</sub>)</a></li>
|
||||
<li><a href="#orgc71ea5b">5.1.8. Performance</a></li>
|
||||
<li><a href="#org6f824c6">5.1.9. Tests</a></li>
|
||||
<li><a href="#org497cd6e">5.1.5. C headers (exposed in qmckl.h)</a></li>
|
||||
<li><a href="#orgf9a5cbd">5.1.6. C sources</a></li>
|
||||
<li><a href="#org1805e2f">5.1.7. Fortran interfaces (exposed in qmckl<sub>f.F90</sub>)</a></li>
|
||||
<li><a href="#orgce44e3b">5.1.8. Performance</a></li>
|
||||
<li><a href="#orga5a3bcd">5.1.9. Tests</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#orgd2e97ee">6. Sherman-Morrison with Slagel Splitting</a>
|
||||
<li><a href="#orgcb6b67a">6. Sherman-Morrison with Slagel Splitting</a>
|
||||
<ul>
|
||||
<li><a href="#orgf940430">6.1. <code>qmckl_sm_splitting</code></a>
|
||||
<li><a href="#orga26433e">6.1. <code>qmckl_sm_splitting</code></a>
|
||||
<ul>
|
||||
<li><a href="#orgd5fc780">6.1.1. Introduction</a></li>
|
||||
<li><a href="#orgc454f0b">6.1.2. API</a></li>
|
||||
<li><a href="#orgcc39a30">6.1.3. Requirements</a></li>
|
||||
<li><a href="#orgb00842b">6.1.4. Pedagogical kernel source (in Fortran)</a>
|
||||
<li><a href="#org7e22d28">6.1.1. Introduction</a></li>
|
||||
<li><a href="#orgb4b5713">6.1.2. API</a></li>
|
||||
<li><a href="#org696fdec">6.1.3. Requirements</a></li>
|
||||
<li><a href="#orgf631cea">6.1.4. Pedagogical kernel source (in Fortran)</a>
|
||||
<ul>
|
||||
<li><a href="#orgf4c3950">6.1.4.1. C interface to the pedagogical kernel (not directly exposed)</a></li>
|
||||
<li><a href="#org07bba46">6.1.4.1. C interface to the pedagogical kernel (not directly exposed)</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#org8315184">6.1.5. C headers (exposed in qmckl.h)</a></li>
|
||||
<li><a href="#org5e183d3">6.1.6. C source</a></li>
|
||||
<li><a href="#org21e16a4">6.1.7. Fortran interfaces (exposed in qmckl<sub>f.F90</sub>)</a></li>
|
||||
<li><a href="#org8a0ac43">6.1.8. Performance…</a></li>
|
||||
<li><a href="#orgb275b41">6.1.9. Test</a></li>
|
||||
<li><a href="#org5b7c61d">6.1.5. C headers (exposed in qmckl.h)</a></li>
|
||||
<li><a href="#org4dca028">6.1.6. C source</a></li>
|
||||
<li><a href="#orgc0a791a">6.1.7. Fortran interfaces (exposed in qmckl<sub>f.F90</sub>)</a></li>
|
||||
<li><a href="#orgba4b8f0">6.1.8. Performance…</a></li>
|
||||
<li><a href="#orgef7e918">6.1.9. Test</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#org3d4edc5">7. End of files</a></li>
|
||||
<li><a href="#org5d87cf9">7. End of files</a></li>
|
||||
</ul>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org6d7f814" class="outline-2">
|
||||
<h2 id="org6d7f814"><span class="section-number-2">1</span> Headers</h2>
|
||||
<div id="outline-container-orgdcd3626" class="outline-2">
|
||||
<h2 id="orgdcd3626"><span class="section-number-2">1</span> Headers</h2>
|
||||
<div class="outline-text-2" id="text-1">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #483d8b;">#include</span> <span style="color: #8b2252;">"qmckl.h"</span>
|
||||
@ -479,17 +479,17 @@ This is the range that determines the how many high performance kernel instantce
|
||||
</p>
|
||||
</div>
|
||||
</div>
|
||||
<div id="outline-container-orgd8d400e" class="outline-2">
|
||||
<h2 id="orgd8d400e"><span class="section-number-2">2</span> Naïve Sherman-Morrison</h2>
|
||||
<div id="outline-container-org395f8a2" class="outline-2">
|
||||
<h2 id="org395f8a2"><span class="section-number-2">2</span> Naïve Sherman-Morrison</h2>
|
||||
<div class="outline-text-2" id="text-2">
|
||||
</div>
|
||||
<div id="outline-container-org9d1cfb7" class="outline-3">
|
||||
<h3 id="org9d1cfb7"><span class="section-number-3">2.1</span> <code>qmckl_sm_naive</code></h3>
|
||||
<div id="outline-container-org3a560a4" class="outline-3">
|
||||
<h3 id="org3a560a4"><span class="section-number-3">2.1</span> <code>qmckl_sm_naive</code></h3>
|
||||
<div class="outline-text-3" id="text-2-1">
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org2542ecc" class="outline-4">
|
||||
<h4 id="org2542ecc"><span class="section-number-4">2.1.1</span> Introduction</h4>
|
||||
<div id="outline-container-orge737a47" class="outline-4">
|
||||
<h4 id="orge737a47"><span class="section-number-4">2.1.1</span> Introduction</h4>
|
||||
<div class="outline-text-4" id="text-2-1-1">
|
||||
<p>
|
||||
This is the simplest of the available Sherman-Morrison-Woodbury kernels. It applies rank-1 updates one by one in
|
||||
@ -539,10 +539,10 @@ from applying the updates to the original matrix.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org07abcea" class="outline-4">
|
||||
<h4 id="org07abcea"><span class="section-number-4">2.1.2</span> API</h4>
|
||||
<div id="outline-container-orgff8fd0a" class="outline-4">
|
||||
<h4 id="orgff8fd0a"><span class="section-number-4">2.1.2</span> API</h4>
|
||||
<div class="outline-text-4" id="text-2-1-2">
|
||||
<table id="orgc687d36" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="org30c5a2a" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -630,8 +630,8 @@ from applying the updates to the original matrix.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org82ceff6" class="outline-4">
|
||||
<h4 id="org82ceff6"><span class="section-number-4">2.1.3</span> Requirements</h4>
|
||||
<div id="outline-container-orga0073cf" class="outline-4">
|
||||
<h4 id="orga0073cf"><span class="section-number-4">2.1.3</span> Requirements</h4>
|
||||
<div class="outline-text-4" id="text-2-1-3">
|
||||
<ul class="org-ul">
|
||||
<li><code>context</code> is not <code>QMCKL_NULL_CONTEXT</code></li>
|
||||
@ -647,8 +647,8 @@ from applying the updates to the original matrix.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org3ad6bf9" class="outline-4">
|
||||
<h4 id="org3ad6bf9"><span class="section-number-4">2.1.4</span> Pedagogical kernel source (in Fortran)</h4>
|
||||
<div id="outline-container-org8655bee" class="outline-4">
|
||||
<h4 id="org8655bee"><span class="section-number-4">2.1.4</span> Pedagogical kernel source (in Fortran)</h4>
|
||||
<div class="outline-text-4" id="text-2-1-4">
|
||||
<p>
|
||||
The following source code written in Fortran is inteded to illustrate how the kernel works. Even though the kernel is
|
||||
@ -742,8 +742,8 @@ not be used in real workloads.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org0976738" class="outline-5">
|
||||
<h5 id="org0976738"><span class="section-number-5">2.1.4.1</span> C interface (not directly exposed)</h5>
|
||||
<div id="outline-container-org60fa75d" class="outline-5">
|
||||
<h5 id="org60fa75d"><span class="section-number-5">2.1.4.1</span> C interface (not directly exposed)</h5>
|
||||
<div class="outline-text-5" id="text-2-1-4-1">
|
||||
<p>
|
||||
The following Fortran function <code>qmckl_sm_naive_doc</code> makes sure
|
||||
@ -755,8 +755,8 @@ for C users and in the module file 'qmckl<sub>f.F90</sub>' for Fortran users.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org43cf801" class="outline-4">
|
||||
<h4 id="org43cf801"><span class="section-number-4">2.1.5</span> C headers (exposed in qmckl.h)</h4>
|
||||
<div id="outline-container-orgdcc65d8" class="outline-4">
|
||||
<h4 id="orgdcc65d8"><span class="section-number-4">2.1.5</span> C headers (exposed in qmckl.h)</h4>
|
||||
<div class="outline-text-4" id="text-2-1-5">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">qmckl_exit_code</span> <span style="color: #0000ff;">qmckl_sm_naive</span> (
|
||||
@ -802,8 +802,8 @@ for C users and in the module file 'qmckl<sub>f.F90</sub>' for Fortran users.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgc515a94" class="outline-4">
|
||||
<h4 id="orgc515a94"><span class="section-number-4">2.1.6</span> C sources</h4>
|
||||
<div id="outline-container-org4f467ce" class="outline-4">
|
||||
<h4 id="org4f467ce"><span class="section-number-4">2.1.6</span> C sources</h4>
|
||||
<div class="outline-text-4" id="text-2-1-6">
|
||||
<p>
|
||||
Common includes and macros used by all the Sherman-Morrison-Woodbury kernels.
|
||||
@ -905,7 +905,7 @@ multiple of <code>SIMD_LENGTH</code>.
|
||||
<code>qmckl_exit_code qmckl_sm_naive_{Dim}</code> is a C function-template that is used to genereate instances of C fucntions based on the range given above. The advantage of this method is that for each of these instances all the dimensions and loop-bounds are known at compile time, allowing the compiler to optimize more aggressively.
|
||||
</p>
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c" id="org675b015"><span style="color: #a020f0;">static</span> <span style="color: #a020f0;">inline</span> <span style="color: #228b22;">qmckl_exit_code</span> <span style="color: #a0522d;">qmckl_sm_naive_</span>{Dim}(
|
||||
<pre class="src src-c" id="org9b4dba9"><span style="color: #a020f0;">static</span> <span style="color: #a020f0;">inline</span> <span style="color: #228b22;">qmckl_exit_code</span> <span style="color: #a0522d;">qmckl_sm_naive_</span>{Dim}(
|
||||
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">qmckl_context</span> <span style="color: #a0522d;">context</span>,
|
||||
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">uint64_t</span> <span style="color: #a0522d;">N_updates</span>,
|
||||
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">double</span>* <span style="color: #a020f0;">restrict</span> <span style="color: #a0522d;">Updates</span>,
|
||||
@ -981,7 +981,7 @@ multiple of <code>SIMD_LENGTH</code>.
|
||||
This is the kernel generator written in Python. It uses the kernel generator range and templates defined above to generate the C kernel instances.
|
||||
</p>
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-python" id="orgb9cfd51"><span style="color: #a0522d;">text</span>=<span style="color: #8b2252;">"""</span>
|
||||
<pre class="src src-python" id="orgc122fa1"><span style="color: #a0522d;">text</span>=<span style="color: #8b2252;">"""</span>
|
||||
<span style="color: #8b2252;">static inline qmckl_exit_code qmckl_sm_naive_{Dim}(</span>
|
||||
<span style="color: #8b2252;"> const qmckl_context context,</span>
|
||||
<span style="color: #8b2252;"> const uint64_t N_updates,</span>
|
||||
@ -1065,7 +1065,7 @@ This is the kernel generator written in Python. It uses the kernel generator ran
|
||||
Python script that generated C switch cases that call individual kernel instances.
|
||||
</p>
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-python" id="orgc171413"><span style="color: #a0522d;">text</span>=<span style="color: #8b2252;">"""</span>
|
||||
<pre class="src src-python" id="org0139d0d"><span style="color: #a0522d;">text</span>=<span style="color: #8b2252;">"""</span>
|
||||
<span style="color: #8b2252;">case {Dim}: </span>
|
||||
<span style="color: #8b2252;"> return qmckl_sm_naive_{Dim}(context,</span>
|
||||
<span style="color: #8b2252;"> N_updates,</span>
|
||||
@ -2706,14 +2706,14 @@ Python script that generated C switch cases that call individual kernel instance
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orga31d2c2" class="outline-4">
|
||||
<h4 id="orga31d2c2"><span class="section-number-4">2.1.7</span> Fortran interfaces (exposed in qmckl<sub>f.F90</sub>)</h4>
|
||||
<div id="outline-container-org85f1814" class="outline-4">
|
||||
<h4 id="org85f1814"><span class="section-number-4">2.1.7</span> Fortran interfaces (exposed in qmckl<sub>f.F90</sub>)</h4>
|
||||
<div class="outline-text-4" id="text-2-1-7">
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgd1496a0" class="outline-4">
|
||||
<h4 id="orgd1496a0"><span class="section-number-4">2.1.8</span> Performance</h4>
|
||||
<div id="outline-container-orgb2166ea" class="outline-4">
|
||||
<h4 id="orgb2166ea"><span class="section-number-4">2.1.8</span> Performance</h4>
|
||||
<div class="outline-text-4" id="text-2-1-8">
|
||||
<p>
|
||||
This function performs best when there is only 1 rank-1 update in the update cycle. It is
|
||||
@ -2722,8 +2722,8 @@ can never resolve a situation where applying the update causes singular behaviou
|
||||
</p>
|
||||
</div>
|
||||
</div>
|
||||
<div id="outline-container-org2f73f3a" class="outline-4">
|
||||
<h4 id="org2f73f3a"><span class="section-number-4">2.1.9</span> Tests</h4>
|
||||
<div id="outline-container-org528dc47" class="outline-4">
|
||||
<h4 id="org528dc47"><span class="section-number-4">2.1.9</span> Tests</h4>
|
||||
<div class="outline-text-4" id="text-2-1-9">
|
||||
<p>
|
||||
The tests for the kernels are executed on datasets that are extracted from a run of
|
||||
@ -2791,17 +2791,17 @@ rc = QMCKL_SUCCESS;
|
||||
</div>
|
||||
|
||||
|
||||
<div id="outline-container-org73280c7" class="outline-2">
|
||||
<h2 id="org73280c7"><span class="section-number-2">3</span> Sherman-Morrison with Slagel Splitting (core)</h2>
|
||||
<div id="outline-container-org926b53b" class="outline-2">
|
||||
<h2 id="org926b53b"><span class="section-number-2">3</span> Sherman-Morrison with Slagel Splitting (core)</h2>
|
||||
<div class="outline-text-2" id="text-3">
|
||||
</div>
|
||||
<div id="outline-container-org061671c" class="outline-3">
|
||||
<h3 id="org061671c"><span class="section-number-3">3.1</span> <code>qmckl_sm_splitting_core</code></h3>
|
||||
<div id="outline-container-org41a68ed" class="outline-3">
|
||||
<h3 id="org41a68ed"><span class="section-number-3">3.1</span> <code>qmckl_sm_splitting_core</code></h3>
|
||||
<div class="outline-text-3" id="text-3-1">
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgaa19840" class="outline-4">
|
||||
<h4 id="orgaa19840"><span class="section-number-4">3.1.1</span> Introduction</h4>
|
||||
<div id="outline-container-org8f32ea1" class="outline-4">
|
||||
<h4 id="org8f32ea1"><span class="section-number-4">3.1.1</span> Introduction</h4>
|
||||
<div class="outline-text-4" id="text-3-1-1">
|
||||
<p>
|
||||
<code>qmckl_sm_splitting_core</code> is the inner core part of 'Sherman-Morrison with update splitting' in the next section.
|
||||
@ -2829,10 +2829,10 @@ If the determinant is passed it will only be partially updated if there were any
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org4a4f327" class="outline-4">
|
||||
<h4 id="org4a4f327"><span class="section-number-4">3.1.2</span> API</h4>
|
||||
<div id="outline-container-orgd9d8039" class="outline-4">
|
||||
<h4 id="orgd9d8039"><span class="section-number-4">3.1.2</span> API</h4>
|
||||
<div class="outline-text-4" id="text-3-1-2">
|
||||
<table id="org3147709" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="org2b0f286" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -2941,8 +2941,8 @@ If the determinant is passed it will only be partially updated if there were any
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgfa87110" class="outline-4">
|
||||
<h4 id="orgfa87110"><span class="section-number-4">3.1.3</span> Requirements</h4>
|
||||
<div id="outline-container-org11809f5" class="outline-4">
|
||||
<h4 id="org11809f5"><span class="section-number-4">3.1.3</span> Requirements</h4>
|
||||
<div class="outline-text-4" id="text-3-1-3">
|
||||
<ul class="org-ul">
|
||||
<li><code>LDS >= 2</code></li>
|
||||
@ -2959,8 +2959,8 @@ If the determinant is passed it will only be partially updated if there were any
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org8d5b4bb" class="outline-4">
|
||||
<h4 id="org8d5b4bb"><span class="section-number-4">3.1.4</span> Pedagogical kernel source (in Fortran)</h4>
|
||||
<div id="outline-container-org860ab35" class="outline-4">
|
||||
<h4 id="org860ab35"><span class="section-number-4">3.1.4</span> Pedagogical kernel source (in Fortran)</h4>
|
||||
<div class="outline-text-4" id="text-3-1-4">
|
||||
<p>
|
||||
The following source code written in Fortran is inteded to illustrate how the kernel works. Even though the kernel is
|
||||
@ -3076,8 +3076,8 @@ not be used in real workloads.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orga8090a9" class="outline-5">
|
||||
<h5 id="orga8090a9"><span class="section-number-5">3.1.4.1</span> C interface to the pedagogical kernel (not directly exposed)</h5>
|
||||
<div id="outline-container-orgab20ded" class="outline-5">
|
||||
<h5 id="orgab20ded"><span class="section-number-5">3.1.4.1</span> C interface to the pedagogical kernel (not directly exposed)</h5>
|
||||
<div class="outline-text-5" id="text-3-1-4-1">
|
||||
<p>
|
||||
The function <code>qmckl_sm_splitting_core_doc</code> makes sure that
|
||||
@ -3090,8 +3090,8 @@ exposed in <code>qmckl.h</code> and <code>qmckl_f.F90</code>, but
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org745ce95" class="outline-4">
|
||||
<h4 id="org745ce95"><span class="section-number-4">3.1.5</span> C headers (exposed in qmckl.h)</h4>
|
||||
<div id="outline-container-orgfc1da9a" class="outline-4">
|
||||
<h4 id="orgfc1da9a"><span class="section-number-4">3.1.5</span> C headers (exposed in qmckl.h)</h4>
|
||||
<div class="outline-text-4" id="text-3-1-5">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">qmckl_exit_code</span> <span style="color: #0000ff;">qmckl_sm_splitting_core</span> (
|
||||
@ -3146,8 +3146,8 @@ exposed in <code>qmckl.h</code> and <code>qmckl_f.F90</code>, but
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org6232260" class="outline-4">
|
||||
<h4 id="org6232260"><span class="section-number-4">3.1.6</span> C sources</h4>
|
||||
<div id="outline-container-org1ad1be5" class="outline-4">
|
||||
<h4 id="org1ad1be5"><span class="section-number-4">3.1.6</span> C sources</h4>
|
||||
<div class="outline-text-4" id="text-3-1-6">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">qmckl_exit_code</span> <span style="color: #0000ff;">qmckl_sm_splitting_core_hpc</span>(
|
||||
@ -3236,7 +3236,7 @@ exposed in <code>qmckl.h</code> and <code>qmckl_f.F90</code>, but
|
||||
</div>
|
||||
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c" id="org824dcba"><span style="color: #a020f0;">static</span> <span style="color: #a020f0;">inline</span> <span style="color: #228b22;">qmckl_exit_code</span> <span style="color: #a0522d;">qmckl_sm_splitting_core_</span>{Dim}(
|
||||
<pre class="src src-c" id="orgdb1f7f2"><span style="color: #a020f0;">static</span> <span style="color: #a020f0;">inline</span> <span style="color: #228b22;">qmckl_exit_code</span> <span style="color: #a0522d;">qmckl_sm_splitting_core_</span>{Dim}(
|
||||
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">qmckl_context</span> <span style="color: #a0522d;">context</span>,
|
||||
<span style="color: #228b22;">uint64_t</span> <span style="color: #a0522d;">N_updates</span>,
|
||||
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">double</span>* <span style="color: #a020f0;">restrict</span> <span style="color: #a0522d;">Updates</span>,
|
||||
@ -3320,7 +3320,7 @@ exposed in <code>qmckl.h</code> and <code>qmckl_f.F90</code>, but
|
||||
</div>
|
||||
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-python" id="orgd5da8db"><span style="color: #a0522d;">text</span>=<span style="color: #8b2252;">"""</span>
|
||||
<pre class="src src-python" id="org429d649"><span style="color: #a0522d;">text</span>=<span style="color: #8b2252;">"""</span>
|
||||
<span style="color: #8b2252;">static inline qmckl_exit_code qmckl_sm_splitting_core_{Dim}(</span>
|
||||
<span style="color: #8b2252;"> const qmckl_context context,</span>
|
||||
<span style="color: #8b2252;"> uint64_t N_updates,</span>
|
||||
@ -3412,7 +3412,7 @@ exposed in <code>qmckl.h</code> and <code>qmckl_f.F90</code>, but
|
||||
</div>
|
||||
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-python" id="org94bd4c5"><span style="color: #a0522d;">text</span>=<span style="color: #8b2252;">"""</span>
|
||||
<pre class="src src-python" id="org7cbdaf9"><span style="color: #a0522d;">text</span>=<span style="color: #8b2252;">"""</span>
|
||||
<span style="color: #8b2252;">case {Dim}: {</span>
|
||||
<span style="color: #8b2252;"> return qmckl_sm_splitting_core_{Dim}(</span>
|
||||
<span style="color: #8b2252;"> context,</span>
|
||||
@ -5380,14 +5380,14 @@ exposed in <code>qmckl.h</code> and <code>qmckl_f.F90</code>, but
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org31a0e26" class="outline-4">
|
||||
<h4 id="org31a0e26"><span class="section-number-4">3.1.7</span> Fortran interfaces (exposed in qmckl<sub>f.F90</sub>)</h4>
|
||||
<div id="outline-container-orgc29d784" class="outline-4">
|
||||
<h4 id="orgc29d784"><span class="section-number-4">3.1.7</span> Fortran interfaces (exposed in qmckl<sub>f.F90</sub>)</h4>
|
||||
<div class="outline-text-4" id="text-3-1-7">
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org14f19c8" class="outline-4">
|
||||
<h4 id="org14f19c8"><span class="section-number-4">3.1.8</span> Performance</h4>
|
||||
<div id="outline-container-org6d89768" class="outline-4">
|
||||
<h4 id="org6d89768"><span class="section-number-4">3.1.8</span> Performance</h4>
|
||||
<div class="outline-text-4" id="text-3-1-8">
|
||||
<p>
|
||||
This function cannot be used by itself and is used in Sherman-Morrison with update splitting and Woodbury 3x3 and 2x2
|
||||
@ -5399,17 +5399,17 @@ with Sherman-Morrison and update splitting. Please look at the performance recco
|
||||
</div>
|
||||
|
||||
|
||||
<div id="outline-container-org41a80c1" class="outline-2">
|
||||
<h2 id="org41a80c1"><span class="section-number-2">4</span> Woodbury 2x2</h2>
|
||||
<div id="outline-container-org906fb0a" class="outline-2">
|
||||
<h2 id="org906fb0a"><span class="section-number-2">4</span> Woodbury 2x2</h2>
|
||||
<div class="outline-text-2" id="text-4">
|
||||
</div>
|
||||
<div id="outline-container-org4560e0b" class="outline-3">
|
||||
<h3 id="org4560e0b"><span class="section-number-3">4.1</span> <code>qmckl_woodbury_2x2</code></h3>
|
||||
<div id="outline-container-org1565a53" class="outline-3">
|
||||
<h3 id="org1565a53"><span class="section-number-3">4.1</span> <code>qmckl_woodbury_2x2</code></h3>
|
||||
<div class="outline-text-3" id="text-4-1">
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org01daccd" class="outline-4">
|
||||
<h4 id="org01daccd"><span class="section-number-4">4.1.1</span> Introduction</h4>
|
||||
<div id="outline-container-orge53ac67" class="outline-4">
|
||||
<h4 id="orge53ac67"><span class="section-number-4">4.1.1</span> Introduction</h4>
|
||||
<div class="outline-text-4" id="text-4-1-1">
|
||||
<p>
|
||||
The Woodbury 2x2 kernel. It is used to apply two rank-1 updates at once. The formula used in
|
||||
@ -5433,10 +5433,10 @@ from applying the updates to the original matrix.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org829547c" class="outline-4">
|
||||
<h4 id="org829547c"><span class="section-number-4">4.1.2</span> API</h4>
|
||||
<div id="outline-container-org2e02f13" class="outline-4">
|
||||
<h4 id="org2e02f13"><span class="section-number-4">4.1.2</span> API</h4>
|
||||
<div class="outline-text-4" id="text-4-1-2">
|
||||
<table id="org4b39c05" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="org47d3f5c" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -5517,8 +5517,8 @@ from applying the updates to the original matrix.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orga131210" class="outline-4">
|
||||
<h4 id="orga131210"><span class="section-number-4">4.1.3</span> Requirements</h4>
|
||||
<div id="outline-container-org4be1658" class="outline-4">
|
||||
<h4 id="org4be1658"><span class="section-number-4">4.1.3</span> Requirements</h4>
|
||||
<div class="outline-text-4" id="text-4-1-3">
|
||||
<ul class="org-ul">
|
||||
<li><code>context</code> is not <code>qmckl_null_context</code></li>
|
||||
@ -5532,8 +5532,8 @@ from applying the updates to the original matrix.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org67c051c" class="outline-4">
|
||||
<h4 id="org67c051c"><span class="section-number-4">4.1.4</span> Pedagogical kernel source (in Fortran)</h4>
|
||||
<div id="outline-container-org8b56845" class="outline-4">
|
||||
<h4 id="org8b56845"><span class="section-number-4">4.1.4</span> Pedagogical kernel source (in Fortran)</h4>
|
||||
<div class="outline-text-4" id="text-4-1-4">
|
||||
<p>
|
||||
The following source code written in Fortran is inteded to illustrate how the kernel works. Even though the kernel is
|
||||
@ -5669,8 +5669,8 @@ not be used in real workloads.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgc2d1cec" class="outline-5">
|
||||
<h5 id="orgc2d1cec"><span class="section-number-5">4.1.4.1</span> C interface (not directly exposed)</h5>
|
||||
<div id="outline-container-org94693c6" class="outline-5">
|
||||
<h5 id="org94693c6"><span class="section-number-5">4.1.4.1</span> C interface (not directly exposed)</h5>
|
||||
<div class="outline-text-5" id="text-4-1-4-1">
|
||||
<p>
|
||||
The function <code>qmckl_sm_splitting_core_doc</code> makes sure that
|
||||
@ -5683,8 +5683,8 @@ exposed in <code>qmckl.h</code> and <code>qmckl_f.F90</code>, but
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org3fd5f42" class="outline-4">
|
||||
<h4 id="org3fd5f42"><span class="section-number-4">4.1.5</span> C headers (exposed in qmckl.h)</h4>
|
||||
<div id="outline-container-org2b22859" class="outline-4">
|
||||
<h4 id="org2b22859"><span class="section-number-4">4.1.5</span> C headers (exposed in qmckl.h)</h4>
|
||||
<div class="outline-text-4" id="text-4-1-5">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">qmckl_exit_code</span> <span style="color: #0000ff;">qmckl_woodbury_2x2</span> (
|
||||
@ -5727,8 +5727,8 @@ exposed in <code>qmckl.h</code> and <code>qmckl_f.F90</code>, but
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org94224d7" class="outline-4">
|
||||
<h4 id="org94224d7"><span class="section-number-4">4.1.6</span> C sources</h4>
|
||||
<div id="outline-container-org90682f9" class="outline-4">
|
||||
<h4 id="org90682f9"><span class="section-number-4">4.1.6</span> C sources</h4>
|
||||
<div class="outline-text-4" id="text-4-1-6">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">qmckl_exit_code</span> <span style="color: #0000ff;">qmckl_woodbury_2x2_hpc</span>(<span style="color: #a020f0;">const</span> <span style="color: #228b22;">qmckl_context</span> <span style="color: #a0522d;">context</span>,
|
||||
@ -5812,7 +5812,7 @@ exposed in <code>qmckl.h</code> and <code>qmckl_f.F90</code>, but
|
||||
</div>
|
||||
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c" id="orgef29c5e"><span style="color: #a020f0;">static</span> <span style="color: #a020f0;">inline</span> <span style="color: #228b22;">qmckl_exit_code</span> <span style="color: #a0522d;">qmckl_woodbury_2x2_</span>{Dim}(
|
||||
<pre class="src src-c" id="org0177587"><span style="color: #a020f0;">static</span> <span style="color: #a020f0;">inline</span> <span style="color: #228b22;">qmckl_exit_code</span> <span style="color: #a0522d;">qmckl_woodbury_2x2_</span>{Dim}(
|
||||
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">qmckl_context</span> <span style="color: #a0522d;">context</span>,
|
||||
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">double</span>* <span style="color: #a020f0;">restrict</span> <span style="color: #a0522d;">Updates</span>,
|
||||
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">uint64_t</span>* <span style="color: #a020f0;">restrict</span> <span style="color: #a0522d;">Updates_index</span>,
|
||||
@ -7762,14 +7762,14 @@ exposed in <code>qmckl.h</code> and <code>qmckl_f.F90</code>, but
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgf384caf" class="outline-4">
|
||||
<h4 id="orgf384caf"><span class="section-number-4">4.1.7</span> Fortran interfaces (exposed in qmckl<sub>f.F90</sub>)</h4>
|
||||
<div id="outline-container-org9647030" class="outline-4">
|
||||
<h4 id="org9647030"><span class="section-number-4">4.1.7</span> Fortran interfaces (exposed in qmckl<sub>f.F90</sub>)</h4>
|
||||
<div class="outline-text-4" id="text-4-1-7">
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgd589a90" class="outline-4">
|
||||
<h4 id="orgd589a90"><span class="section-number-4">4.1.8</span> Performance</h4>
|
||||
<div id="outline-container-org437cef3" class="outline-4">
|
||||
<h4 id="org437cef3"><span class="section-number-4">4.1.8</span> Performance</h4>
|
||||
<div class="outline-text-4" id="text-4-1-8">
|
||||
<p>
|
||||
This function is most efficient when used in cases where there are only 2 rank-1 updates and
|
||||
@ -7778,8 +7778,8 @@ it is sure they will not result in a singular matrix.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org4e3f48a" class="outline-4">
|
||||
<h4 id="org4e3f48a"><span class="section-number-4">4.1.9</span> Tests</h4>
|
||||
<div id="outline-container-orgc4ee906" class="outline-4">
|
||||
<h4 id="orgc4ee906"><span class="section-number-4">4.1.9</span> Tests</h4>
|
||||
<div class="outline-text-4" id="text-4-1-9">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #0000ff;">assert</span>(Updates2 != <span style="color: #008b8b;">NULL</span>);
|
||||
@ -7816,17 +7816,17 @@ rc = QMCKL_SUCCESS;
|
||||
</div>
|
||||
|
||||
|
||||
<div id="outline-container-org9885d47" class="outline-2">
|
||||
<h2 id="org9885d47"><span class="section-number-2">5</span> Woodbury 3x3</h2>
|
||||
<div id="outline-container-org0281010" class="outline-2">
|
||||
<h2 id="org0281010"><span class="section-number-2">5</span> Woodbury 3x3</h2>
|
||||
<div class="outline-text-2" id="text-5">
|
||||
</div>
|
||||
<div id="outline-container-org47583a1" class="outline-3">
|
||||
<h3 id="org47583a1"><span class="section-number-3">5.1</span> <code>qmckl_woodbury_3x3</code></h3>
|
||||
<div id="outline-container-org2b58dab" class="outline-3">
|
||||
<h3 id="org2b58dab"><span class="section-number-3">5.1</span> <code>qmckl_woodbury_3x3</code></h3>
|
||||
<div class="outline-text-3" id="text-5-1">
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org5d6d8a6" class="outline-4">
|
||||
<h4 id="org5d6d8a6"><span class="section-number-4">5.1.1</span> Introduction</h4>
|
||||
<div id="outline-container-org7afbe2a" class="outline-4">
|
||||
<h4 id="org7afbe2a"><span class="section-number-4">5.1.1</span> Introduction</h4>
|
||||
<div class="outline-text-4" id="text-5-1-1">
|
||||
<p>
|
||||
The Woodbury 3x3 kernel. It is used to apply two rank-1 updates at once. The formula used in
|
||||
@ -7850,10 +7850,10 @@ from applying the updates to the original matrix.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org8f50a8e" class="outline-4">
|
||||
<h4 id="org8f50a8e"><span class="section-number-4">5.1.2</span> API</h4>
|
||||
<div id="outline-container-org26f3275" class="outline-4">
|
||||
<h4 id="org26f3275"><span class="section-number-4">5.1.2</span> API</h4>
|
||||
<div class="outline-text-4" id="text-5-1-2">
|
||||
<table id="org8939436" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="orga48c32a" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -7934,8 +7934,8 @@ from applying the updates to the original matrix.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org5f3a556" class="outline-4">
|
||||
<h4 id="org5f3a556"><span class="section-number-4">5.1.3</span> Requirements</h4>
|
||||
<div id="outline-container-org5b76fa3" class="outline-4">
|
||||
<h4 id="org5b76fa3"><span class="section-number-4">5.1.3</span> Requirements</h4>
|
||||
<div class="outline-text-4" id="text-5-1-3">
|
||||
<ul class="org-ul">
|
||||
<li><code>context</code> is not <code>qmckl_null_context</code></li>
|
||||
@ -7949,8 +7949,8 @@ from applying the updates to the original matrix.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orge3a815a" class="outline-4">
|
||||
<h4 id="orge3a815a"><span class="section-number-4">5.1.4</span> Pedagogical kernel source (in Fortran)</h4>
|
||||
<div id="outline-container-org0ed42a7" class="outline-4">
|
||||
<h4 id="org0ed42a7"><span class="section-number-4">5.1.4</span> Pedagogical kernel source (in Fortran)</h4>
|
||||
<div class="outline-text-4" id="text-5-1-4">
|
||||
<p>
|
||||
The following source code written in Fortran is inteded to illustrate how the kernel works. Even though the kernel is
|
||||
@ -8095,8 +8095,8 @@ not be used in real workloads.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org452dfc0" class="outline-5">
|
||||
<h5 id="org452dfc0"><span class="section-number-5">5.1.4.1</span> C interface (not directly exposed)</h5>
|
||||
<div id="outline-container-orgf1269af" class="outline-5">
|
||||
<h5 id="orgf1269af"><span class="section-number-5">5.1.4.1</span> C interface (not directly exposed)</h5>
|
||||
<div class="outline-text-5" id="text-5-1-4-1">
|
||||
<p>
|
||||
The function <code>qmckl_sm_splitting_core_doc</code> makes sure that
|
||||
@ -8109,8 +8109,8 @@ exposed in <code>qmckl.h</code> and <code>qmckl_f.F90</code>, but
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org691392d" class="outline-4">
|
||||
<h4 id="org691392d"><span class="section-number-4">5.1.5</span> C headers (exposed in qmckl.h)</h4>
|
||||
<div id="outline-container-org497cd6e" class="outline-4">
|
||||
<h4 id="org497cd6e"><span class="section-number-4">5.1.5</span> C headers (exposed in qmckl.h)</h4>
|
||||
<div class="outline-text-4" id="text-5-1-5">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">qmckl_exit_code</span> <span style="color: #0000ff;">qmckl_woodbury_3x3</span> (
|
||||
@ -8153,8 +8153,8 @@ exposed in <code>qmckl.h</code> and <code>qmckl_f.F90</code>, but
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org80779a1" class="outline-4">
|
||||
<h4 id="org80779a1"><span class="section-number-4">5.1.6</span> C sources</h4>
|
||||
<div id="outline-container-orgf9a5cbd" class="outline-4">
|
||||
<h4 id="orgf9a5cbd"><span class="section-number-4">5.1.6</span> C sources</h4>
|
||||
<div class="outline-text-4" id="text-5-1-6">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">qmckl_exit_code</span> <span style="color: #0000ff;">qmckl_woodbury_3x3_hpc</span>(<span style="color: #a020f0;">const</span> <span style="color: #228b22;">qmckl_context</span> <span style="color: #a0522d;">context</span>,
|
||||
@ -8264,7 +8264,7 @@ exposed in <code>qmckl.h</code> and <code>qmckl_f.F90</code>, but
|
||||
</div>
|
||||
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c" id="orgcb1dab6"><span style="color: #a020f0;">static</span> <span style="color: #a020f0;">inline</span> <span style="color: #228b22;">qmckl_exit_code</span> <span style="color: #a0522d;">qmckl_woodbury_3x3_</span>{Dim}(
|
||||
<pre class="src src-c" id="org1e959f9"><span style="color: #a020f0;">static</span> <span style="color: #a020f0;">inline</span> <span style="color: #228b22;">qmckl_exit_code</span> <span style="color: #a0522d;">qmckl_woodbury_3x3_</span>{Dim}(
|
||||
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">qmckl_context</span> <span style="color: #a0522d;">context</span>,
|
||||
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">double</span>* <span style="color: #a020f0;">restrict</span> <span style="color: #a0522d;">Updates</span>,
|
||||
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">uint64_t</span>* <span style="color: #a020f0;">restrict</span> <span style="color: #a0522d;">Updates_index</span>,
|
||||
@ -10634,14 +10634,14 @@ exposed in <code>qmckl.h</code> and <code>qmckl_f.F90</code>, but
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgdc1e708" class="outline-4">
|
||||
<h4 id="orgdc1e708"><span class="section-number-4">5.1.7</span> Fortran interfaces (exposed in qmckl<sub>f.F90</sub>)</h4>
|
||||
<div id="outline-container-org1805e2f" class="outline-4">
|
||||
<h4 id="org1805e2f"><span class="section-number-4">5.1.7</span> Fortran interfaces (exposed in qmckl<sub>f.F90</sub>)</h4>
|
||||
<div class="outline-text-4" id="text-5-1-7">
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgc71ea5b" class="outline-4">
|
||||
<h4 id="orgc71ea5b"><span class="section-number-4">5.1.8</span> Performance</h4>
|
||||
<div id="outline-container-orgce44e3b" class="outline-4">
|
||||
<h4 id="orgce44e3b"><span class="section-number-4">5.1.8</span> Performance</h4>
|
||||
<div class="outline-text-4" id="text-5-1-8">
|
||||
<p>
|
||||
This function is most efficient when used in cases where there are only 3 rank-1 updates and
|
||||
@ -10650,8 +10650,8 @@ it is sure they will not result in a singular matrix.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org6f824c6" class="outline-4">
|
||||
<h4 id="org6f824c6"><span class="section-number-4">5.1.9</span> Tests</h4>
|
||||
<div id="outline-container-orga5a3bcd" class="outline-4">
|
||||
<h4 id="orga5a3bcd"><span class="section-number-4">5.1.9</span> Tests</h4>
|
||||
<div class="outline-text-4" id="text-5-1-9">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #0000ff;">assert</span>(Updates3 != <span style="color: #008b8b;">NULL</span>);
|
||||
@ -10688,17 +10688,17 @@ rc = QMCKL_SUCCESS;
|
||||
</div>
|
||||
|
||||
|
||||
<div id="outline-container-orgd2e97ee" class="outline-2">
|
||||
<h2 id="orgd2e97ee"><span class="section-number-2">6</span> Sherman-Morrison with Slagel Splitting</h2>
|
||||
<div id="outline-container-orgcb6b67a" class="outline-2">
|
||||
<h2 id="orgcb6b67a"><span class="section-number-2">6</span> Sherman-Morrison with Slagel Splitting</h2>
|
||||
<div class="outline-text-2" id="text-6">
|
||||
</div>
|
||||
<div id="outline-container-orgf940430" class="outline-3">
|
||||
<h3 id="orgf940430"><span class="section-number-3">6.1</span> <code>qmckl_sm_splitting</code></h3>
|
||||
<div id="outline-container-orga26433e" class="outline-3">
|
||||
<h3 id="orga26433e"><span class="section-number-3">6.1</span> <code>qmckl_sm_splitting</code></h3>
|
||||
<div class="outline-text-3" id="text-6-1">
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgd5fc780" class="outline-4">
|
||||
<h4 id="orgd5fc780"><span class="section-number-4">6.1.1</span> Introduction</h4>
|
||||
<div id="outline-container-org7e22d28" class="outline-4">
|
||||
<h4 id="org7e22d28"><span class="section-number-4">6.1.1</span> Introduction</h4>
|
||||
<div class="outline-text-4" id="text-6-1-1">
|
||||
<p>
|
||||
This is a variation on the 'Naive' Sherman-Morrison kernel. Whenever the denominator \(1+v_j^T S^{-1} u_j\) in
|
||||
@ -10722,10 +10722,10 @@ from applying the updates to the original matrix.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgc454f0b" class="outline-4">
|
||||
<h4 id="orgc454f0b"><span class="section-number-4">6.1.2</span> API</h4>
|
||||
<div id="outline-container-orgb4b5713" class="outline-4">
|
||||
<h4 id="orgb4b5713"><span class="section-number-4">6.1.2</span> API</h4>
|
||||
<div class="outline-text-4" id="text-6-1-2">
|
||||
<table id="orgfd88c8e" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
<table id="orgbc3f36e" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
|
||||
|
||||
|
||||
<colgroup>
|
||||
@ -10813,8 +10813,8 @@ from applying the updates to the original matrix.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgcc39a30" class="outline-4">
|
||||
<h4 id="orgcc39a30"><span class="section-number-4">6.1.3</span> Requirements</h4>
|
||||
<div id="outline-container-org696fdec" class="outline-4">
|
||||
<h4 id="org696fdec"><span class="section-number-4">6.1.3</span> Requirements</h4>
|
||||
<div class="outline-text-4" id="text-6-1-3">
|
||||
<ul class="org-ul">
|
||||
<li><code>context</code> is not <code>QMCKL_NULL_CONTEXT</code></li>
|
||||
@ -10829,8 +10829,8 @@ from applying the updates to the original matrix.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgb00842b" class="outline-4">
|
||||
<h4 id="orgb00842b"><span class="section-number-4">6.1.4</span> Pedagogical kernel source (in Fortran)</h4>
|
||||
<div id="outline-container-orgf631cea" class="outline-4">
|
||||
<h4 id="orgf631cea"><span class="section-number-4">6.1.4</span> Pedagogical kernel source (in Fortran)</h4>
|
||||
<div class="outline-text-4" id="text-6-1-4">
|
||||
<p>
|
||||
The following source code written in Fortran is inteded to illustrate how the kernel works. Even though the kernel is
|
||||
@ -10909,8 +10909,8 @@ not be used in real workloads.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgf4c3950" class="outline-5">
|
||||
<h5 id="orgf4c3950"><span class="section-number-5">6.1.4.1</span> C interface to the pedagogical kernel (not directly exposed)</h5>
|
||||
<div id="outline-container-org07bba46" class="outline-5">
|
||||
<h5 id="org07bba46"><span class="section-number-5">6.1.4.1</span> C interface to the pedagogical kernel (not directly exposed)</h5>
|
||||
<div class="outline-text-5" id="text-6-1-4-1">
|
||||
<p>
|
||||
The following Fortran function <code>qmckl_sm_splitting_core_doc</code> makes sure
|
||||
@ -10923,8 +10923,8 @@ for C users and in the module file 'qmckl<sub>f.F90</sub>' for Fortran users.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org8315184" class="outline-4">
|
||||
<h4 id="org8315184"><span class="section-number-4">6.1.5</span> C headers (exposed in qmckl.h)</h4>
|
||||
<div id="outline-container-org5b7c61d" class="outline-4">
|
||||
<h4 id="org5b7c61d"><span class="section-number-4">6.1.5</span> C headers (exposed in qmckl.h)</h4>
|
||||
<div class="outline-text-4" id="text-6-1-5">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">qmckl_exit_code</span> <span style="color: #0000ff;">qmckl_sm_splitting</span> (
|
||||
@ -10970,11 +10970,11 @@ for C users and in the module file 'qmckl<sub>f.F90</sub>' for Fortran users.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org5e183d3" class="outline-4">
|
||||
<h4 id="org5e183d3"><span class="section-number-4">6.1.6</span> C source</h4>
|
||||
<div id="outline-container-org4dca028" class="outline-4">
|
||||
<h4 id="org4dca028"><span class="section-number-4">6.1.6</span> C source</h4>
|
||||
<div class="outline-text-4" id="text-6-1-6">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-python" id="orgb95db75"><span style="color: #a0522d;">text</span>=<span style="color: #8b2252;">"""</span>
|
||||
<pre class="src src-python" id="orgf498969"><span style="color: #a0522d;">text</span>=<span style="color: #8b2252;">"""</span>
|
||||
<span style="color: #8b2252;">case {Dim}: {</span>
|
||||
<span style="color: #8b2252;"> rc = qmckl_sm_splitting_core_{Dim}(</span>
|
||||
<span style="color: #8b2252;"> context,</span>
|
||||
@ -11377,14 +11377,14 @@ for C users and in the module file 'qmckl<sub>f.F90</sub>' for Fortran users.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org21e16a4" class="outline-4">
|
||||
<h4 id="org21e16a4"><span class="section-number-4">6.1.7</span> Fortran interfaces (exposed in qmckl<sub>f.F90</sub>)</h4>
|
||||
<div id="outline-container-orgc0a791a" class="outline-4">
|
||||
<h4 id="orgc0a791a"><span class="section-number-4">6.1.7</span> Fortran interfaces (exposed in qmckl<sub>f.F90</sub>)</h4>
|
||||
<div class="outline-text-4" id="text-6-1-7">
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org8a0ac43" class="outline-4">
|
||||
<h4 id="org8a0ac43"><span class="section-number-4">6.1.8</span> Performance…</h4>
|
||||
<div id="outline-container-orgba4b8f0" class="outline-4">
|
||||
<h4 id="orgba4b8f0"><span class="section-number-4">6.1.8</span> Performance…</h4>
|
||||
<div class="outline-text-4" id="text-6-1-8">
|
||||
<p>
|
||||
This kernel performs best when there are 2 or more rank-1 update cycles and fail-rate is high.
|
||||
@ -11392,8 +11392,8 @@ This kernel performs best when there are 2 or more rank-1 update cycles and fail
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgb275b41" class="outline-4">
|
||||
<h4 id="orgb275b41"><span class="section-number-4">6.1.9</span> Test</h4>
|
||||
<div id="outline-container-orgef7e918" class="outline-4">
|
||||
<h4 id="orgef7e918"><span class="section-number-4">6.1.9</span> Test</h4>
|
||||
<div class="outline-text-4" id="text-6-1-9">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #0000ff;">assert</span>(Updates3 != <span style="color: #008b8b;">NULL</span>);
|
||||
@ -11431,8 +11431,8 @@ rc = QMCKL_SUCCESS;
|
||||
|
||||
|
||||
|
||||
<div id="outline-container-org3d4edc5" class="outline-2">
|
||||
<h2 id="org3d4edc5"><span class="section-number-2">7</span> End of files</h2>
|
||||
<div id="outline-container-org5d87cf9" class="outline-2">
|
||||
<h2 id="org5d87cf9"><span class="section-number-2">7</span> End of files</h2>
|
||||
<div class="outline-text-2" id="text-7">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #0000ff;">assert</span> (<span style="color: #228b22;">qmckl_context_destroy</span>(<span style="color: #a0522d;">context</span>) == QMCKL_SUCCESS);
|
||||
@ -11446,7 +11446,7 @@ rc = QMCKL_SUCCESS;
|
||||
</div>
|
||||
<div id="postamble" class="status">
|
||||
<p class="author">Author: TREX CoE</p>
|
||||
<p class="date">Created: 2024-12-13 Fri 15:09</p>
|
||||
<p class="date">Created: 2024-12-13 Fri 15:45</p>
|
||||
<p class="validation"><a href="http://validator.w3.org/check?uri=referer">Validate</a></p>
|
||||
</div>
|
||||
</body>
|
||||
|
||||
@ -3,7 +3,7 @@
|
||||
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
|
||||
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
|
||||
<head>
|
||||
<!-- 2024-12-13 Fri 15:08 -->
|
||||
<!-- 2024-12-13 Fri 15:44 -->
|
||||
<meta http-equiv="Content-Type" content="text/html;charset=utf-8" />
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1" />
|
||||
<title>Data for Tests</title>
|
||||
@ -246,27 +246,27 @@ for the JavaScript code in this tag.
|
||||
<h2>Table of Contents</h2>
|
||||
<div id="text-table-of-contents">
|
||||
<ul>
|
||||
<li><a href="#org2986aaf">1. CHBrClF</a>
|
||||
<li><a href="#org2f27ed3">1. CHBrClF</a>
|
||||
<ul>
|
||||
<li><a href="#org1d7e0ef">1.1. XYZ coordinates</a></li>
|
||||
<li><a href="#org4b943c8">1.2. Atomic basis set</a></li>
|
||||
<li><a href="#org74e5bb2">1.3. Molecular orbitals</a></li>
|
||||
<li><a href="#org111cc83">1.4. Electron coordinates</a></li>
|
||||
<li><a href="#org9558795">1.1. XYZ coordinates</a></li>
|
||||
<li><a href="#orgf3533a3">1.2. Atomic basis set</a></li>
|
||||
<li><a href="#org906c77f">1.3. Molecular orbitals</a></li>
|
||||
<li><a href="#org6a7e413">1.4. Electron coordinates</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#org2cb8aff">2. N2</a>
|
||||
<li><a href="#org12f31d9">2. N2</a>
|
||||
<ul>
|
||||
<li><a href="#org32e473a">2.1. XYZ coordinates</a></li>
|
||||
<li><a href="#org9905524">2.2. Electron coordinates</a></li>
|
||||
<li><a href="#orga6e8506">2.3. Jastrow related data</a></li>
|
||||
<li><a href="#org447f529">2.1. XYZ coordinates</a></li>
|
||||
<li><a href="#orgd601c79">2.2. Electron coordinates</a></li>
|
||||
<li><a href="#org98dc5aa">2.3. Jastrow related data</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org2986aaf" class="outline-2">
|
||||
<h2 id="org2986aaf"><span class="section-number-2">1</span> CHBrClF</h2>
|
||||
<div id="outline-container-org2f27ed3" class="outline-2">
|
||||
<h2 id="org2f27ed3"><span class="section-number-2">1</span> CHBrClF</h2>
|
||||
<div class="outline-text-2" id="text-1">
|
||||
<p>
|
||||
This test is the all-electron Hartree-Fock wave function of CHClBr,
|
||||
@ -350,8 +350,8 @@ and with a high maximum angular momentum.
|
||||
</div>
|
||||
|
||||
|
||||
<div id="outline-container-org1d7e0ef" class="outline-3">
|
||||
<h3 id="org1d7e0ef"><span class="section-number-3">1.1</span> XYZ coordinates</h3>
|
||||
<div id="outline-container-org9558795" class="outline-3">
|
||||
<h3 id="org9558795"><span class="section-number-3">1.1</span> XYZ coordinates</h3>
|
||||
<div class="outline-text-3" id="text-1-1">
|
||||
<pre class="example">
|
||||
5
|
||||
@ -381,8 +381,8 @@ Nuclear coordinates are stored in atomic units in transposed format.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org4b943c8" class="outline-3">
|
||||
<h3 id="org4b943c8"><span class="section-number-3">1.2</span> Atomic basis set</h3>
|
||||
<div id="outline-container-orgf3533a3" class="outline-3">
|
||||
<h3 id="orgf3533a3"><span class="section-number-3">1.2</span> Atomic basis set</h3>
|
||||
<div class="outline-text-3" id="text-1-2">
|
||||
<pre class="example">
|
||||
HYDROGEN
|
||||
@ -1301,8 +1301,8 @@ F 1
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org74e5bb2" class="outline-3">
|
||||
<h3 id="org74e5bb2"><span class="section-number-3">1.3</span> Molecular orbitals</h3>
|
||||
<div id="outline-container-org906c77f" class="outline-3">
|
||||
<h3 id="org906c77f"><span class="section-number-3">1.3</span> Molecular orbitals</h3>
|
||||
<div class="outline-text-3" id="text-1-3">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #483d8b;">#define</span> <span style="color: #a0522d;">chbrclf_mo_num</span> ((<span style="color: #228b22;">int64_t</span>) 224)
|
||||
@ -1316,8 +1316,8 @@ F 1
|
||||
</div>
|
||||
|
||||
|
||||
<div id="outline-container-org111cc83" class="outline-3">
|
||||
<h3 id="org111cc83"><span class="section-number-3">1.4</span> Electron coordinates</h3>
|
||||
<div id="outline-container-org6a7e413" class="outline-3">
|
||||
<h3 id="org6a7e413"><span class="section-number-3">1.4</span> Electron coordinates</h3>
|
||||
<div class="outline-text-3" id="text-1-4">
|
||||
<p>
|
||||
Electron coordinates are stored in atomic units in normal format.
|
||||
@ -1476,8 +1476,8 @@ Electron coordinates are stored in atomic units in normal format.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org2cb8aff" class="outline-2">
|
||||
<h2 id="org2cb8aff"><span class="section-number-2">2</span> N2</h2>
|
||||
<div id="outline-container-org12f31d9" class="outline-2">
|
||||
<h2 id="org12f31d9"><span class="section-number-2">2</span> N2</h2>
|
||||
<div class="outline-text-2" id="text-2">
|
||||
<p>
|
||||
This test is mainly for the Jastrow factor and was supplied by
|
||||
@ -1518,8 +1518,8 @@ treated by pseudopotentials thus excluded from the actual calculation.
|
||||
</table>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org32e473a" class="outline-3">
|
||||
<h3 id="org32e473a"><span class="section-number-3">2.1</span> XYZ coordinates</h3>
|
||||
<div id="outline-container-org447f529" class="outline-3">
|
||||
<h3 id="org447f529"><span class="section-number-3">2.1</span> XYZ coordinates</h3>
|
||||
<div class="outline-text-3" id="text-2-1">
|
||||
<pre class="example">
|
||||
2
|
||||
@ -1546,8 +1546,8 @@ Nuclear coordinates are stored in atomic units in transposed format.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org9905524" class="outline-3">
|
||||
<h3 id="org9905524"><span class="section-number-3">2.2</span> Electron coordinates</h3>
|
||||
<div id="outline-container-orgd601c79" class="outline-3">
|
||||
<h3 id="orgd601c79"><span class="section-number-3">2.2</span> Electron coordinates</h3>
|
||||
<div class="outline-text-3" id="text-2-2">
|
||||
<p>
|
||||
Electron coordinates are stored in atomic units in normal format.
|
||||
@ -1586,8 +1586,8 @@ Electron coordinates are stored in atomic units in normal format.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orga6e8506" class="outline-3">
|
||||
<h3 id="orga6e8506"><span class="section-number-3">2.3</span> Jastrow related data</h3>
|
||||
<div id="outline-container-org98dc5aa" class="outline-3">
|
||||
<h3 id="org98dc5aa"><span class="section-number-3">2.3</span> Jastrow related data</h3>
|
||||
<div class="outline-text-3" id="text-2-3">
|
||||
<p>
|
||||
This test is mainly for the Jastrow factor and was supplied by
|
||||
@ -1686,7 +1686,7 @@ Ramon Panades Baruetta.
|
||||
</div>
|
||||
</div>
|
||||
<div id="postamble" class="status">
|
||||
<p class="date">Created: 2024-12-13 Fri 15:08</p>
|
||||
<p class="date">Created: 2024-12-13 Fri 15:44</p>
|
||||
<p class="validation"><a href="http://validator.w3.org/check?uri=referer">Validate</a></p>
|
||||
</div>
|
||||
</body>
|
||||
|
||||
@ -3,7 +3,7 @@
|
||||
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
|
||||
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
|
||||
<head>
|
||||
<!-- 2024-12-13 Fri 15:09 -->
|
||||
<!-- 2024-12-13 Fri 15:45 -->
|
||||
<meta http-equiv="Content-Type" content="text/html;charset=utf-8" />
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1" />
|
||||
<title>TREXIO I/O library</title>
|
||||
@ -324,53 +324,53 @@ for the JavaScript code in this tag.
|
||||
<h2>Table of Contents</h2>
|
||||
<div id="text-table-of-contents">
|
||||
<ul>
|
||||
<li><a href="#orgfd72596">1. Local functions</a>
|
||||
<li><a href="#org5873752">1. Local functions</a>
|
||||
<ul>
|
||||
<li><a href="#orgfc302fb">1.1. Open file</a></li>
|
||||
<li><a href="#org780b013">1.2. Electron</a></li>
|
||||
<li><a href="#orga40df3c">1.3. Nucleus</a>
|
||||
<li><a href="#org70c9322">1.1. Open file</a></li>
|
||||
<li><a href="#org5a3da1b">1.2. Electron</a></li>
|
||||
<li><a href="#orgd9e325a">1.3. Nucleus</a>
|
||||
<ul>
|
||||
<li><a href="#orgd656e11">1.3.1. Number of nuclei</a></li>
|
||||
<li><a href="#org5f2a711">1.3.2. Nuclear charges</a></li>
|
||||
<li><a href="#org4a7b7dd">1.3.3. Nuclear coordinates</a></li>
|
||||
<li><a href="#org28454ee">1.3.1. Number of nuclei</a></li>
|
||||
<li><a href="#org2118db8">1.3.2. Nuclear charges</a></li>
|
||||
<li><a href="#org61207fb">1.3.3. Nuclear coordinates</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#orgdce3b8e">1.4. Basis set and AOs</a>
|
||||
<li><a href="#org4108757">1.4. Basis set and AOs</a>
|
||||
<ul>
|
||||
<li><a href="#orga6f4399">1.4.1. Basis set type</a></li>
|
||||
<li><a href="#orgc38b22b">1.4.2. Number of shells</a></li>
|
||||
<li><a href="#org2ebd7ce">1.4.3. Number of primitives</a></li>
|
||||
<li><a href="#org81fbafe">1.4.4. Number of atomic orbitals</a></li>
|
||||
<li><a href="#org40b0f2b">1.4.5. Nucleus<sub>index</sub> array</a></li>
|
||||
<li><a href="#org8a5fd82">1.4.6. Number of shells per nucleus</a></li>
|
||||
<li><a href="#orgbf2fbb9">1.4.7. Angular momentum</a></li>
|
||||
<li><a href="#org0c442c7">1.4.8. Number of primitives per shell</a></li>
|
||||
<li><a href="#org01b45dc">1.4.9. Indices of the primitives</a></li>
|
||||
<li><a href="#org53c1439">1.4.10. Normalization of the shells</a></li>
|
||||
<li><a href="#org2b1b1c1">1.4.11. Exponents</a></li>
|
||||
<li><a href="#org3746ae4">1.4.12. Coefficients</a></li>
|
||||
<li><a href="#orge169404">1.4.13. Normalization of the primitivies</a></li>
|
||||
<li><a href="#org9e14267">1.4.14. AO Normalization</a></li>
|
||||
<li><a href="#org51f7c0d">1.4.1. Basis set type</a></li>
|
||||
<li><a href="#orgb70574f">1.4.2. Number of shells</a></li>
|
||||
<li><a href="#orge106857">1.4.3. Number of primitives</a></li>
|
||||
<li><a href="#org1e0c7fb">1.4.4. Number of atomic orbitals</a></li>
|
||||
<li><a href="#orgc2f01c4">1.4.5. Nucleus<sub>index</sub> array</a></li>
|
||||
<li><a href="#orgf681d61">1.4.6. Number of shells per nucleus</a></li>
|
||||
<li><a href="#orgfe09a1e">1.4.7. Angular momentum</a></li>
|
||||
<li><a href="#org46381ab">1.4.8. Number of primitives per shell</a></li>
|
||||
<li><a href="#org1bc4e56">1.4.9. Indices of the primitives</a></li>
|
||||
<li><a href="#orgf535ac0">1.4.10. Normalization of the shells</a></li>
|
||||
<li><a href="#org6868f61">1.4.11. Exponents</a></li>
|
||||
<li><a href="#org256fc23">1.4.12. Coefficients</a></li>
|
||||
<li><a href="#org7c37c42">1.4.13. Normalization of the primitivies</a></li>
|
||||
<li><a href="#orgdaee063">1.4.14. AO Normalization</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#orgc76917f">1.5. Molecular orbitals</a>
|
||||
<li><a href="#org514db90">1.5. Molecular orbitals</a>
|
||||
<ul>
|
||||
<li><a href="#org26314ab">1.5.1. Number of MOs</a></li>
|
||||
<li><a href="#org0b5cb31">1.5.2. MO coefficients</a></li>
|
||||
<li><a href="#orge61e5d7">1.5.1. Number of MOs</a></li>
|
||||
<li><a href="#org1b14573">1.5.2. MO coefficients</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#orge77e1a1">1.6. <span class="todo TODO">TODO</span> ECP</a></li>
|
||||
<li><a href="#orgfe2c692">1.6. <span class="todo TODO">TODO</span> ECP</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#org5095ddc">2. Read everything</a></li>
|
||||
<li><a href="#org20ef4f4">3. Test</a>
|
||||
<li><a href="#orga588a34">2. Read everything</a></li>
|
||||
<li><a href="#orgd2ff045">3. Test</a>
|
||||
<ul>
|
||||
<li>
|
||||
<ul>
|
||||
<li><a href="#org46f7f61">3.0.1. Electrons</a></li>
|
||||
<li><a href="#org4cb7e21">3.0.2. Nuclei</a></li>
|
||||
<li><a href="#org2716c35">3.0.3. Atomic basis</a></li>
|
||||
<li><a href="#org3e998bf">3.0.4. MO Basis</a></li>
|
||||
<li><a href="#org02df142">3.0.1. Electrons</a></li>
|
||||
<li><a href="#org1f3f53b">3.0.2. Nuclei</a></li>
|
||||
<li><a href="#org96bfb3a">3.0.3. Atomic basis</a></li>
|
||||
<li><a href="#orga516961">3.0.4. MO Basis</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
@ -379,8 +379,8 @@ for the JavaScript code in this tag.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgfd72596" class="outline-2">
|
||||
<h2 id="orgfd72596"><span class="section-number-2">1</span> Local functions</h2>
|
||||
<div id="outline-container-org5873752" class="outline-2">
|
||||
<h2 id="org5873752"><span class="section-number-2">1</span> Local functions</h2>
|
||||
<div class="outline-text-2" id="text-1">
|
||||
<p>
|
||||
Functions defined in this section are all local: they should not be
|
||||
@ -403,8 +403,8 @@ In the functions defined in this section, we use as local variables
|
||||
</ul>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgfc302fb" class="outline-3">
|
||||
<h3 id="orgfc302fb"><span class="section-number-3">1.1</span> Open file</h3>
|
||||
<div id="outline-container-org70c9322" class="outline-3">
|
||||
<h3 id="org70c9322"><span class="section-number-3">1.1</span> Open file</h3>
|
||||
<div class="outline-text-3" id="text-1-1">
|
||||
<p>
|
||||
We first define a helper function to open a file by first trying to
|
||||
@ -442,8 +442,8 @@ groups of data by passing the <code>trexio_t</code> handle.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org780b013" class="outline-3">
|
||||
<h3 id="org780b013"><span class="section-number-3">1.2</span> Electron</h3>
|
||||
<div id="outline-container-org5a3da1b" class="outline-3">
|
||||
<h3 id="org5a3da1b"><span class="section-number-3">1.2</span> Electron</h3>
|
||||
<div class="outline-text-3" id="text-1-2">
|
||||
<p>
|
||||
In this section we read all the data into the electron data structure.
|
||||
@ -494,8 +494,8 @@ We read the number of up-spin and down-spin electrons.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orga40df3c" class="outline-3">
|
||||
<h3 id="orga40df3c"><span class="section-number-3">1.3</span> Nucleus</h3>
|
||||
<div id="outline-container-orgd9e325a" class="outline-3">
|
||||
<h3 id="orgd9e325a"><span class="section-number-3">1.3</span> Nucleus</h3>
|
||||
<div class="outline-text-3" id="text-1-3">
|
||||
<p>
|
||||
In this section we read the number of nuclei, the molecular geometry and nuclear charges.
|
||||
@ -515,8 +515,8 @@ In this section we read the number of nuclei, the molecular geometry and nuclear
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgd656e11" class="outline-4">
|
||||
<h4 id="orgd656e11"><span class="section-number-4">1.3.1</span> Number of nuclei</h4>
|
||||
<div id="outline-container-org28454ee" class="outline-4">
|
||||
<h4 id="org28454ee"><span class="section-number-4">1.3.1</span> Number of nuclei</h4>
|
||||
<div class="outline-text-4" id="text-1-3-1">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">int64_t</span> <span style="color: #a0522d;">nucleus_num</span> = 0L;
|
||||
@ -539,8 +539,8 @@ rc = qmckl_set_nucleus_num(context, nucleus_num);
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org5f2a711" class="outline-4">
|
||||
<h4 id="org5f2a711"><span class="section-number-4">1.3.2</span> Nuclear charges</h4>
|
||||
<div id="outline-container-org2118db8" class="outline-4">
|
||||
<h4 id="org2118db8"><span class="section-number-4">1.3.2</span> Nuclear charges</h4>
|
||||
<div class="outline-text-4" id="text-1-3-2">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c">{
|
||||
@ -580,8 +580,8 @@ rc = qmckl_set_nucleus_num(context, nucleus_num);
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org4a7b7dd" class="outline-4">
|
||||
<h4 id="org4a7b7dd"><span class="section-number-4">1.3.3</span> Nuclear coordinates</h4>
|
||||
<div id="outline-container-org61207fb" class="outline-4">
|
||||
<h4 id="org61207fb"><span class="section-number-4">1.3.3</span> Nuclear coordinates</h4>
|
||||
<div class="outline-text-4" id="text-1-3-3">
|
||||
<p>
|
||||
Now, we read the molecular geometry. It is stored in normal format
|
||||
@ -636,8 +636,8 @@ in the TREXIO file (<code>'N'</code>), so it will be automatically transposed in
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgdce3b8e" class="outline-3">
|
||||
<h3 id="orgdce3b8e"><span class="section-number-3">1.4</span> Basis set and AOs</h3>
|
||||
<div id="outline-container-org4108757" class="outline-3">
|
||||
<h3 id="org4108757"><span class="section-number-3">1.4</span> Basis set and AOs</h3>
|
||||
<div class="outline-text-3" id="text-1-4">
|
||||
<p>
|
||||
In this section we read the atomic basis set and atomic orbitals.
|
||||
@ -663,8 +663,8 @@ In this section we read the atomic basis set and atomic orbitals.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orga6f4399" class="outline-4">
|
||||
<h4 id="orga6f4399"><span class="section-number-4">1.4.1</span> Basis set type</h4>
|
||||
<div id="outline-container-org51f7c0d" class="outline-4">
|
||||
<h4 id="org51f7c0d"><span class="section-number-4">1.4.1</span> Basis set type</h4>
|
||||
<div class="outline-text-4" id="text-1-4-1">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #483d8b;">#define</span> <span style="color: #a0522d;">MAX_STR_LEN</span> 1024
|
||||
@ -695,8 +695,8 @@ In this section we read the atomic basis set and atomic orbitals.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgc38b22b" class="outline-4">
|
||||
<h4 id="orgc38b22b"><span class="section-number-4">1.4.2</span> Number of shells</h4>
|
||||
<div id="outline-container-orgb70574f" class="outline-4">
|
||||
<h4 id="orgb70574f"><span class="section-number-4">1.4.2</span> Number of shells</h4>
|
||||
<div class="outline-text-4" id="text-1-4-2">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">int64_t</span> <span style="color: #a0522d;">shell_num</span> = 0L;
|
||||
@ -720,8 +720,8 @@ rc = qmckl_set_ao_basis_shell_num(context, shell_num);
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org2ebd7ce" class="outline-4">
|
||||
<h4 id="org2ebd7ce"><span class="section-number-4">1.4.3</span> Number of primitives</h4>
|
||||
<div id="outline-container-orge106857" class="outline-4">
|
||||
<h4 id="orge106857"><span class="section-number-4">1.4.3</span> Number of primitives</h4>
|
||||
<div class="outline-text-4" id="text-1-4-3">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">int64_t</span> <span style="color: #a0522d;">prim_num</span> = 0L;
|
||||
@ -745,8 +745,8 @@ rc = qmckl_set_ao_basis_prim_num(context, prim_num);
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org81fbafe" class="outline-4">
|
||||
<h4 id="org81fbafe"><span class="section-number-4">1.4.4</span> Number of atomic orbitals</h4>
|
||||
<div id="outline-container-org1e0c7fb" class="outline-4">
|
||||
<h4 id="org1e0c7fb"><span class="section-number-4">1.4.4</span> Number of atomic orbitals</h4>
|
||||
<div class="outline-text-4" id="text-1-4-4">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">int64_t</span> <span style="color: #a0522d;">ao_num</span> = 0;
|
||||
@ -770,8 +770,8 @@ rc = qmckl_set_ao_basis_ao_num(context, ao_num);
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org40b0f2b" class="outline-4">
|
||||
<h4 id="org40b0f2b"><span class="section-number-4">1.4.5</span> Nucleus<sub>index</sub> array</h4>
|
||||
<div id="outline-container-orgc2f01c4" class="outline-4">
|
||||
<h4 id="orgc2f01c4"><span class="section-number-4">1.4.5</span> Nucleus<sub>index</sub> array</h4>
|
||||
<div class="outline-text-4" id="text-1-4-5">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c">{
|
||||
@ -851,8 +851,8 @@ rc = qmckl_set_ao_basis_ao_num(context, ao_num);
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org8a5fd82" class="outline-4">
|
||||
<h4 id="org8a5fd82"><span class="section-number-4">1.4.6</span> Number of shells per nucleus</h4>
|
||||
<div id="outline-container-orgf681d61" class="outline-4">
|
||||
<h4 id="orgf681d61"><span class="section-number-4">1.4.6</span> Number of shells per nucleus</h4>
|
||||
<div class="outline-text-4" id="text-1-4-6">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c">{
|
||||
@ -937,8 +937,8 @@ rc = qmckl_set_ao_basis_ao_num(context, ao_num);
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgbf2fbb9" class="outline-4">
|
||||
<h4 id="orgbf2fbb9"><span class="section-number-4">1.4.7</span> Angular momentum</h4>
|
||||
<div id="outline-container-orgfe09a1e" class="outline-4">
|
||||
<h4 id="orgfe09a1e"><span class="section-number-4">1.4.7</span> Angular momentum</h4>
|
||||
<div class="outline-text-4" id="text-1-4-7">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c">{
|
||||
@ -983,8 +983,8 @@ rc = qmckl_set_ao_basis_ao_num(context, ao_num);
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org0c442c7" class="outline-4">
|
||||
<h4 id="org0c442c7"><span class="section-number-4">1.4.8</span> Number of primitives per shell</h4>
|
||||
<div id="outline-container-org46381ab" class="outline-4">
|
||||
<h4 id="org46381ab"><span class="section-number-4">1.4.8</span> Number of primitives per shell</h4>
|
||||
<div class="outline-text-4" id="text-1-4-8">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c">{
|
||||
@ -1070,8 +1070,8 @@ rc = qmckl_set_ao_basis_ao_num(context, ao_num);
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org01b45dc" class="outline-4">
|
||||
<h4 id="org01b45dc"><span class="section-number-4">1.4.9</span> Indices of the primitives</h4>
|
||||
<div id="outline-container-org1bc4e56" class="outline-4">
|
||||
<h4 id="org1bc4e56"><span class="section-number-4">1.4.9</span> Indices of the primitives</h4>
|
||||
<div class="outline-text-4" id="text-1-4-9">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c">{
|
||||
@ -1151,8 +1151,8 @@ rc = qmckl_set_ao_basis_ao_num(context, ao_num);
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org53c1439" class="outline-4">
|
||||
<h4 id="org53c1439"><span class="section-number-4">1.4.10</span> Normalization of the shells</h4>
|
||||
<div id="outline-container-orgf535ac0" class="outline-4">
|
||||
<h4 id="orgf535ac0"><span class="section-number-4">1.4.10</span> Normalization of the shells</h4>
|
||||
<div class="outline-text-4" id="text-1-4-10">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c">{
|
||||
@ -1197,8 +1197,8 @@ rc = qmckl_set_ao_basis_ao_num(context, ao_num);
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org2b1b1c1" class="outline-4">
|
||||
<h4 id="org2b1b1c1"><span class="section-number-4">1.4.11</span> Exponents</h4>
|
||||
<div id="outline-container-org6868f61" class="outline-4">
|
||||
<h4 id="org6868f61"><span class="section-number-4">1.4.11</span> Exponents</h4>
|
||||
<div class="outline-text-4" id="text-1-4-11">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c">{
|
||||
@ -1243,8 +1243,8 @@ rc = qmckl_set_ao_basis_ao_num(context, ao_num);
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org3746ae4" class="outline-4">
|
||||
<h4 id="org3746ae4"><span class="section-number-4">1.4.12</span> Coefficients</h4>
|
||||
<div id="outline-container-org256fc23" class="outline-4">
|
||||
<h4 id="org256fc23"><span class="section-number-4">1.4.12</span> Coefficients</h4>
|
||||
<div class="outline-text-4" id="text-1-4-12">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c">{
|
||||
@ -1289,8 +1289,8 @@ rc = qmckl_set_ao_basis_ao_num(context, ao_num);
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orge169404" class="outline-4">
|
||||
<h4 id="orge169404"><span class="section-number-4">1.4.13</span> Normalization of the primitivies</h4>
|
||||
<div id="outline-container-org7c37c42" class="outline-4">
|
||||
<h4 id="org7c37c42"><span class="section-number-4">1.4.13</span> Normalization of the primitivies</h4>
|
||||
<div class="outline-text-4" id="text-1-4-13">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c">{
|
||||
@ -1335,8 +1335,8 @@ rc = qmckl_set_ao_basis_ao_num(context, ao_num);
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org9e14267" class="outline-4">
|
||||
<h4 id="org9e14267"><span class="section-number-4">1.4.14</span> AO Normalization</h4>
|
||||
<div id="outline-container-orgdaee063" class="outline-4">
|
||||
<h4 id="orgdaee063"><span class="section-number-4">1.4.14</span> AO Normalization</h4>
|
||||
<div class="outline-text-4" id="text-1-4-14">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c">{
|
||||
@ -1391,8 +1391,8 @@ rc = qmckl_set_ao_basis_ao_num(context, ao_num);
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
<div id="outline-container-orgc76917f" class="outline-3">
|
||||
<h3 id="orgc76917f"><span class="section-number-3">1.5</span> Molecular orbitals</h3>
|
||||
<div id="outline-container-org514db90" class="outline-3">
|
||||
<h3 id="org514db90"><span class="section-number-3">1.5</span> Molecular orbitals</h3>
|
||||
<div class="outline-text-3" id="text-1-5">
|
||||
<p>
|
||||
In this section we read the MO coefficients.
|
||||
@ -1418,8 +1418,8 @@ In this section we read the MO coefficients.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org26314ab" class="outline-4">
|
||||
<h4 id="org26314ab"><span class="section-number-4">1.5.1</span> Number of MOs</h4>
|
||||
<div id="outline-container-orge61e5d7" class="outline-4">
|
||||
<h4 id="orge61e5d7"><span class="section-number-4">1.5.1</span> Number of MOs</h4>
|
||||
<div class="outline-text-4" id="text-1-5-1">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">int64_t</span> <span style="color: #a0522d;">mo_num</span> = 0L;
|
||||
@ -1442,8 +1442,8 @@ rc = qmckl_set_mo_basis_mo_num(context, mo_num);
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org0b5cb31" class="outline-4">
|
||||
<h4 id="org0b5cb31"><span class="section-number-4">1.5.2</span> MO coefficients</h4>
|
||||
<div id="outline-container-org1b14573" class="outline-4">
|
||||
<h4 id="org1b14573"><span class="section-number-4">1.5.2</span> MO coefficients</h4>
|
||||
<div class="outline-text-4" id="text-1-5-2">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c">{
|
||||
@ -1492,12 +1492,12 @@ rc = qmckl_set_mo_basis_mo_num(context, mo_num);
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orge77e1a1" class="outline-3">
|
||||
<h3 id="orge77e1a1"><span class="section-number-3">1.6</span> <span class="todo TODO">TODO</span> ECP</h3>
|
||||
<div id="outline-container-orgfe2c692" class="outline-3">
|
||||
<h3 id="orgfe2c692"><span class="section-number-3">1.6</span> <span class="todo TODO">TODO</span> ECP</h3>
|
||||
</div>
|
||||
</div>
|
||||
<div id="outline-container-org5095ddc" class="outline-2">
|
||||
<h2 id="org5095ddc"><span class="section-number-2">2</span> Read everything</h2>
|
||||
<div id="outline-container-orga588a34" class="outline-2">
|
||||
<h2 id="orga588a34"><span class="section-number-2">2</span> Read everything</h2>
|
||||
<div class="outline-text-2" id="text-2">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">qmckl_exit_code</span>
|
||||
@ -1572,8 +1572,8 @@ rc = qmckl_set_mo_basis_mo_num(context, mo_num);
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org20ef4f4" class="outline-2">
|
||||
<h2 id="org20ef4f4"><span class="section-number-2">3</span> Test</h2>
|
||||
<div id="outline-container-orgd2ff045" class="outline-2">
|
||||
<h2 id="orgd2ff045"><span class="section-number-2">3</span> Test</h2>
|
||||
<div class="outline-text-2" id="text-3">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #483d8b;">#ifdef</span> HAVE_TREXIO
|
||||
@ -1597,8 +1597,8 @@ rc = qmckl_trexio_read(context, filename, 255);
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org46f7f61" class="outline-4">
|
||||
<h4 id="org46f7f61"><span class="section-number-4">3.0.1</span> Electrons</h4>
|
||||
<div id="outline-container-org02df142" class="outline-4">
|
||||
<h4 id="org02df142"><span class="section-number-4">3.0.1</span> Electrons</h4>
|
||||
<div class="outline-text-4" id="text-3-0-1">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c">printf(<span style="color: #8b2252;">"Electrons\n"</span>);
|
||||
@ -1616,8 +1616,8 @@ rc = qmckl_get_electron_down_num(context, &dn_num);
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org4cb7e21" class="outline-4">
|
||||
<h4 id="org4cb7e21"><span class="section-number-4">3.0.2</span> Nuclei</h4>
|
||||
<div id="outline-container-org1f3f53b" class="outline-4">
|
||||
<h4 id="org1f3f53b"><span class="section-number-4">3.0.2</span> Nuclei</h4>
|
||||
<div class="outline-text-4" id="text-3-0-2">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c">printf(<span style="color: #8b2252;">"Nuclei\n"</span>);
|
||||
@ -1657,8 +1657,8 @@ coord = <span style="color: #008b8b;">NULL</span>;
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org2716c35" class="outline-4">
|
||||
<h4 id="org2716c35"><span class="section-number-4">3.0.3</span> Atomic basis</h4>
|
||||
<div id="outline-container-org96bfb3a" class="outline-4">
|
||||
<h4 id="org96bfb3a"><span class="section-number-4">3.0.3</span> Atomic basis</h4>
|
||||
<div class="outline-text-4" id="text-3-0-3">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c">printf(<span style="color: #8b2252;">"Atomic basis\n"</span>);
|
||||
@ -1766,8 +1766,8 @@ prim_factor = <span style="color: #008b8b;">NULL</span>;
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org3e998bf" class="outline-4">
|
||||
<h4 id="org3e998bf"><span class="section-number-4">3.0.4</span> MO Basis</h4>
|
||||
<div id="outline-container-orga516961" class="outline-4">
|
||||
<h4 id="orga516961"><span class="section-number-4">3.0.4</span> MO Basis</h4>
|
||||
<div class="outline-text-4" id="text-3-0-4">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c">printf(<span style="color: #8b2252;">"MOs\n"</span>);
|
||||
@ -1798,7 +1798,7 @@ charge = <span style="color: #008b8b;">NULL</span>;
|
||||
</div>
|
||||
<div id="postamble" class="status">
|
||||
<p class="author">Author: TREX CoE</p>
|
||||
<p class="date">Created: 2024-12-13 Fri 15:09</p>
|
||||
<p class="date">Created: 2024-12-13 Fri 15:45</p>
|
||||
<p class="validation"><a href="http://validator.w3.org/check?uri=referer">Validate</a></p>
|
||||
</div>
|
||||
</body>
|
||||
|
||||
@ -3,7 +3,7 @@
|
||||
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
|
||||
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
|
||||
<head>
|
||||
<!-- 2024-12-13 Fri 15:08 -->
|
||||
<!-- 2024-12-13 Fri 15:44 -->
|
||||
<meta http-equiv="Content-Type" content="text/html;charset=utf-8" />
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1" />
|
||||
<title>Verificarlo CI</title>
|
||||
@ -324,22 +324,22 @@ for the JavaScript code in this tag.
|
||||
<h2>Table of Contents</h2>
|
||||
<div id="text-table-of-contents">
|
||||
<ul>
|
||||
<li><a href="#orga6e0cef">1. Verificarlo probes</a>
|
||||
<li><a href="#org1fe9d49">1. Verificarlo probes</a>
|
||||
<ul>
|
||||
<li><a href="#orgccd96af">1.1. Automatically initialize the <code>vfc_probe</code> object if <code>VFC_CI</code> is defined</a></li>
|
||||
<li><a href="#org95dacf3">1.2. Standard probe, without check</a></li>
|
||||
<li><a href="#orgd104973">1.3. Probe with absolute check</a></li>
|
||||
<li><a href="#org82f0385">1.4. Probe with relative check</a></li>
|
||||
<li><a href="#org761d96c">1.5. Automatically delete and dump the vfc<sub>probe</sub> object if <code>VFC_CI</code> is defined</a></li>
|
||||
<li><a href="#org744d454">1.1. Automatically initialize the <code>vfc_probe</code> object if <code>VFC_CI</code> is defined</a></li>
|
||||
<li><a href="#org382d37a">1.2. Standard probe, without check</a></li>
|
||||
<li><a href="#org343e5f6">1.3. Probe with absolute check</a></li>
|
||||
<li><a href="#orgd5f81b3">1.4. Probe with relative check</a></li>
|
||||
<li><a href="#org3be8cc9">1.5. Automatically delete and dump the vfc<sub>probe</sub> object if <code>VFC_CI</code> is defined</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a href="#org0894507">2. Fortran wrappers</a></li>
|
||||
<li><a href="#org26985a4">2. Fortran wrappers</a></li>
|
||||
</ul>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orga6e0cef" class="outline-2">
|
||||
<h2 id="orga6e0cef"><span class="section-number-2">1</span> Verificarlo probes</h2>
|
||||
<div id="outline-container-org1fe9d49" class="outline-2">
|
||||
<h2 id="org1fe9d49"><span class="section-number-2">1</span> Verificarlo probes</h2>
|
||||
<div class="outline-text-2" id="text-1">
|
||||
<p>
|
||||
This file contains utility functions to enable the Verificarlo
|
||||
@ -390,8 +390,8 @@ To learn more about Verificarlo CI :
|
||||
</div>
|
||||
|
||||
|
||||
<div id="outline-container-orgccd96af" class="outline-3">
|
||||
<h3 id="orgccd96af"><span class="section-number-3">1.1</span> Automatically initialize the <code>vfc_probe</code> object if <code>VFC_CI</code> is defined</h3>
|
||||
<div id="outline-container-org744d454" class="outline-3">
|
||||
<h3 id="org744d454"><span class="section-number-3">1.1</span> Automatically initialize the <code>vfc_probe</code> object if <code>VFC_CI</code> is defined</h3>
|
||||
<div class="outline-text-3" id="text-1-1">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">void</span> <span style="color: #0000ff;">qmckl_init_probes</span>();
|
||||
@ -409,8 +409,8 @@ To learn more about Verificarlo CI :
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org95dacf3" class="outline-3">
|
||||
<h3 id="org95dacf3"><span class="section-number-3">1.2</span> Standard probe, without check</h3>
|
||||
<div id="outline-container-org382d37a" class="outline-3">
|
||||
<h3 id="org382d37a"><span class="section-number-3">1.2</span> Standard probe, without check</h3>
|
||||
<div class="outline-text-3" id="text-1-2">
|
||||
<ul class="org-ul">
|
||||
<li>if <code>VFC_CI</code> is defined, place a standard probe</li>
|
||||
@ -445,8 +445,8 @@ if <code>VFC_CI</code> is undefined, return <code>false</code> (no error)
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-orgd104973" class="outline-3">
|
||||
<h3 id="orgd104973"><span class="section-number-3">1.3</span> Probe with absolute check</h3>
|
||||
<div id="outline-container-org343e5f6" class="outline-3">
|
||||
<h3 id="org343e5f6"><span class="section-number-3">1.3</span> Probe with absolute check</h3>
|
||||
<div class="outline-text-3" id="text-1-3">
|
||||
<ul class="org-ul">
|
||||
<li>if <code>VFC_CI</code> is defined, place a probe with an absolute check</li>
|
||||
@ -486,8 +486,8 @@ and accuracy
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org82f0385" class="outline-3">
|
||||
<h3 id="org82f0385"><span class="section-number-3">1.4</span> Probe with relative check</h3>
|
||||
<div id="outline-container-orgd5f81b3" class="outline-3">
|
||||
<h3 id="orgd5f81b3"><span class="section-number-3">1.4</span> Probe with relative check</h3>
|
||||
<div class="outline-text-3" id="text-1-4">
|
||||
<ul class="org-ul">
|
||||
<li>if <code>VFC_CI</code> is defined, place a probe with a relative check</li>
|
||||
@ -527,8 +527,8 @@ and accuracy
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org761d96c" class="outline-3">
|
||||
<h3 id="org761d96c"><span class="section-number-3">1.5</span> Automatically delete and dump the vfc<sub>probe</sub> object if <code>VFC_CI</code> is defined</h3>
|
||||
<div id="outline-container-org3be8cc9" class="outline-3">
|
||||
<h3 id="org3be8cc9"><span class="section-number-3">1.5</span> Automatically delete and dump the vfc<sub>probe</sub> object if <code>VFC_CI</code> is defined</h3>
|
||||
<div class="outline-text-3" id="text-1-5">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">void</span> <span style="color: #0000ff;">qmckl_dump_probes</span>();
|
||||
@ -547,8 +547,8 @@ and accuracy
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div id="outline-container-org0894507" class="outline-2">
|
||||
<h2 id="org0894507"><span class="section-number-2">2</span> Fortran wrappers</h2>
|
||||
<div id="outline-container-org26985a4" class="outline-2">
|
||||
<h2 id="org26985a4"><span class="section-number-2">2</span> Fortran wrappers</h2>
|
||||
<div class="outline-text-2" id="text-2">
|
||||
<div class="org-src-container">
|
||||
<pre class="src src-c"><span style="color: #228b22;">bool</span> <span style="color: #0000ff;">qmckl_probe_f</span>(
|
||||
@ -672,7 +672,7 @@ and accuracy
|
||||
</div>
|
||||
<div id="postamble" class="status">
|
||||
<p class="author">Author: TREX CoE</p>
|
||||
<p class="date">Created: 2024-12-13 Fri 15:08</p>
|
||||
<p class="date">Created: 2024-12-13 Fri 15:44</p>
|
||||
<p class="validation"><a href="http://validator.w3.org/check?uri=referer">Validate</a></p>
|
||||
</div>
|
||||
</body>
|
||||
|
||||
Loading…
Reference in New Issue
Block a user