Fix TREXIO installation in the Verificarlo workflow (#55)

* specify CC and FC at configure time

* use verificarlo-c instead of verificarlo-f

* install TREXIO in ci_install.sh script

* use GNU compiler instead of verificarlo ones to build TREXIO

* install BLAS and LAPACK due to the recent change in configure of QMCkl

* Fix QMCkl pre-build issue

* move TREXIO installation back to .yml file and downgrade to v.1.1.0

* formatting .yml

.github/workflows/vfc_test_workflow.yml

@@ -25,7 +25,7 @@ jobs:
         run: |
           ln -s /usr/bin/python3 /usr/bin/python
           apt update
-          apt -y install emacs pkg-config wget libhdf5-dev
+          apt -y install emacs pkg-config wget libhdf5-dev libblas-dev liblapack-dev
 
       - name: Install trexio
         run: |
@@ -33,9 +33,10 @@ jobs:
           wget https://github.com/TREX-CoE/trexio/releases/download/v${VERSION}/trexio-${VERSION}.tar.gz
           tar -zxf trexio-${VERSION}.tar.gz
           cd trexio-${VERSION}
-          ./configure --prefix=/usr
-          make -j 8
-          sudo make install
+          ./configure --prefix=/usr CC="gcc-7" FC="gfortran-7"
+          # modify LDFLAGS to include -lhdf5_hl because autoconf sometime fails to detect the HL component
+          make LDFLAGS="-L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5_hl"
+          make install
 
       - name: Run tests
         run: vfc_ci test -g -r

autogen.sh

@@ -1,5 +1,5 @@
 #!/bin/bash
 
 export srcdir="."
-${PYTHON} ${srcdir}/tools/build_makefile.py
+python ${srcdir}/tools/build_makefile.py
 autoreconf -i -Wall --no-recursive

tools/build_makefile.py

@@ -250,8 +250,8 @@ def main():
     tmp = "EXTRA_DIST += "
     r = subprocess.check_output("git ls-tree --name-only -r HEAD".split())
     for line in r.splitlines():
-       if "share/qmckl/test_data/" in line:
-         tmp += " \\\n   " + line
+       if b"share/qmckl/test_data/" in line:
+         tmp += " \\\n   " + line.decode('utf8')
     tmp += "\n"
     output += tmp.split("\n")