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<a accesskey="h" href=""> UP </a>
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<a accesskey="H" href="index.html"> HOME </a>
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<h1 class="title">Inter-particle distances</h1>
<div id="table-of-contents">
<h2>Table of Contents</h2>
<div id="text-table-of-contents">
<ul>
<li><a href="#org41f5cd4">1. Squared distance</a>
<ul>
<li><a href="#orga341d9b">1.1. <code>qmckl_distance_sq</code></a>
<ul>
<li><a href="#org8e3601b">1.1.1. Performance</a></li>
</ul>
</li>
</ul>
</li>
<li><a href="#org1dd726e">2. Distance</a>
<ul>
<li><a href="#org50962f3">2.1. <code>qmckl_distance</code></a>
<ul>
<li><a href="#org5c62cbe">2.1.1. Requirements</a></li>
<li><a href="#orgb166008">2.1.2. C header</a></li>
<li><a href="#org341b437">2.1.3. Source</a></li>
<li><a href="#orgaee353c">2.1.4. Performance</a></li>
</ul>
</li>
</ul>
</li>
<li><a href="#org508d7b6">3. Rescaled Distance</a>
<ul>
<li><a href="#org41c1072">3.1. <code>qmckl_distance_rescaled</code></a>
<ul>
<li><a href="#org1a3fcea">3.1.1. Requirements</a></li>
<li><a href="#org41fbb84">3.1.2. C header</a></li>
<li><a href="#org98b3fc8">3.1.3. Source</a></li>
<li><a href="#org6a8051b">3.1.4. Performance</a></li>
</ul>
</li>
</ul>
</li>
<li><a href="#org0aa544a">4. Rescaled Distance Derivatives</a>
<ul>
<li><a href="#orgbeb1322">4.1. <code>qmckl_distance_rescaled_deriv_e</code></a></li>
</ul>
</li>
</ul>
</div>
</div>
<div id="outline-container-org41f5cd4" class="outline-2">
<h2 id="org41f5cd4"><span class="section-number-2">1</span> Squared distance</h2>
<div class="outline-text-2" id="text-1">
</div>
<div id="outline-container-orga341d9b" class="outline-3">
<h3 id="orga341d9b"><span class="section-number-3">1.1</span> <code>qmckl_distance_sq</code></h3>
<div class="outline-text-3" id="text-1-1">
<p>
<code>qmckl_distance_sq</code> computes the matrix of the squared distances
between all pairs of points in two sets, one point within each set:
</p>
<p>
\[
C_{ij} = \sum_{k=1}^3 (A_{k,i}-B_{k,j})^2
\]
</p>
<table id="org4571cbf" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
<colgroup>
<col class="org-left" />
<col class="org-left" />
<col class="org-left" />
<col class="org-left" />
</colgroup>
<thead>
<tr>
<th scope="col" class="org-left">Variable</th>
<th scope="col" class="org-left">Type</th>
<th scope="col" class="org-left">In/Out</th>
<th scope="col" class="org-left">Description</th>
</tr>
</thead>
<tbody>
<tr>
<td class="org-left"><code>context</code></td>
<td class="org-left"><code>qmckl_context</code></td>
<td class="org-left">in</td>
<td class="org-left">Global state</td>
</tr>
<tr>
<td class="org-left"><code>transa</code></td>
<td class="org-left"><code>char</code></td>
<td class="org-left">in</td>
<td class="org-left">Array <code>A</code> is <code>'N'</code>: Normal, <code>'T'</code>: Transposed</td>
</tr>
<tr>
<td class="org-left"><code>transb</code></td>
<td class="org-left"><code>char</code></td>
<td class="org-left">in</td>
<td class="org-left">Array <code>B</code> is <code>'N'</code>: Normal, <code>'T'</code>: Transposed</td>
</tr>
<tr>
<td class="org-left"><code>m</code></td>
<td class="org-left"><code>int64_t</code></td>
<td class="org-left">in</td>
<td class="org-left">Number of points in the first set</td>
</tr>
<tr>
<td class="org-left"><code>n</code></td>
<td class="org-left"><code>int64_t</code></td>
<td class="org-left">in</td>
<td class="org-left">Number of points in the second set</td>
</tr>
<tr>
<td class="org-left"><code>A</code></td>
<td class="org-left"><code>double[][lda]</code></td>
<td class="org-left">in</td>
<td class="org-left">Array containing the \(m \times 3\) matrix \(A\)</td>
</tr>
<tr>
<td class="org-left"><code>lda</code></td>
<td class="org-left"><code>int64_t</code></td>
<td class="org-left">in</td>
<td class="org-left">Leading dimension of array <code>A</code></td>
</tr>
<tr>
<td class="org-left"><code>B</code></td>
<td class="org-left"><code>double[][ldb]</code></td>
<td class="org-left">in</td>
<td class="org-left">Array containing the \(n \times 3\) matrix \(B\)</td>
</tr>
<tr>
<td class="org-left"><code>ldb</code></td>
<td class="org-left"><code>int64_t</code></td>
<td class="org-left">in</td>
<td class="org-left">Leading dimension of array <code>B</code></td>
</tr>
<tr>
<td class="org-left"><code>C</code></td>
<td class="org-left"><code>double[n][ldc]</code></td>
<td class="org-left">out</td>
<td class="org-left">Array containing the \(m \times n\) matrix \(C\)</td>
</tr>
<tr>
<td class="org-left"><code>ldc</code></td>
<td class="org-left"><code>int64_t</code></td>
<td class="org-left">in</td>
<td class="org-left">Leading dimension of array <code>C</code></td>
</tr>
</tbody>
</table>
<p>
Requirements:
</p>
<ul class="org-ul">
<li><code>context</code> is not <code>QMCKL_NULL_CONTEXT</code></li>
<li><code>m &gt; 0</code></li>
<li><code>n &gt; 0</code></li>
<li><code>lda &gt;= 3</code> if <code>transa == 'N'</code></li>
<li><code>lda &gt;= m</code> if <code>transa == 'T'</code></li>
<li><code>ldb &gt;= 3</code> if <code>transb == 'N'</code></li>
<li><code>ldb &gt;= n</code> if <code>transb == 'T'</code></li>
<li><code>ldc &gt;= m</code></li>
<li><code>A</code> is allocated with at least \(3 \times m \times 8\) bytes</li>
<li><code>B</code> is allocated with at least \(3 \times n \times 8\) bytes</li>
<li><code>C</code> is allocated with at least \(m \times n \times 8\) bytes</li>
</ul>
<div class="org-src-container">
<pre class="src src-c"><span style="color: #228b22;">qmckl_exit_code</span> <span style="color: #0000ff;">qmckl_distance_sq</span> (
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">qmckl_context</span> <span style="color: #a0522d;">context</span>,
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">char</span> <span style="color: #a0522d;">transa</span>,
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">char</span> <span style="color: #a0522d;">transb</span>,
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">int64_t</span> <span style="color: #a0522d;">m</span>,
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">int64_t</span> <span style="color: #a0522d;">n</span>,
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">double</span>* <span style="color: #a0522d;">A</span>,
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">int64_t</span> <span style="color: #a0522d;">lda</span>,
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">double</span>* <span style="color: #a0522d;">B</span>,
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">int64_t</span> <span style="color: #a0522d;">ldb</span>,
<span style="color: #228b22;">double</span>* <span style="color: #a020f0;">const</span> <span style="color: #a0522d;">C</span>,
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">int64_t</span> <span style="color: #a0522d;">ldc</span> );
</pre>
</div>
<div class="org-src-container">
<pre class="src src-f90"><span style="color: #228b22;">integer</span><span style="color: #a0522d;"> function qmckl_distance_sq_f(context, transa, transb, m, n, </span><span style="color: #a020f0;">&amp;</span>
A, LDA, B, LDB, C, LDC) <span style="color: #a020f0;">&amp;</span>
<span style="color: #a020f0;">result</span>(info)
<span style="color: #a020f0;">use</span> <span style="color: #0000ff;">qmckl</span>
<span style="color: #a020f0;">implicit</span> <span style="color: #228b22;">none</span>
<span style="color: #228b22;">integer</span>(qmckl_context) , <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> context</span>
<span style="color: #228b22;">character</span> , <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> transa, transb</span>
<span style="color: #228b22;">integer</span>*8 , <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> m, n</span>
<span style="color: #228b22;">integer</span>*8 , <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> lda</span>
<span style="color: #228b22;">real</span>*8 , <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> A(lda,*)</span>
<span style="color: #228b22;">integer</span>*8 , <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> ldb</span>
<span style="color: #228b22;">real</span>*8 , <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> B(ldb,*)</span>
<span style="color: #228b22;">integer</span>*8 , <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> ldc</span>
<span style="color: #228b22;">real</span>*8 , <span style="color: #a020f0;">intent</span>(out) ::<span style="color: #a0522d;"> C(ldc,*)</span>
<span style="color: #228b22;">integer</span>*8 ::<span style="color: #a0522d;"> i,j</span>
<span style="color: #228b22;">real</span>*8 ::<span style="color: #a0522d;"> x, y, z</span>
<span style="color: #228b22;">integer</span> ::<span style="color: #a0522d;"> transab</span>
info = QMCKL_SUCCESS
<span style="color: #a020f0;">if</span> (context == QMCKL_NULL_CONTEXT) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_CONTEXT
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">if</span> (m &lt;= 0_8) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_4
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">if</span> (n &lt;= 0_8) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_5
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">if</span> (transa == <span style="color: #8b2252;">'N'</span> <span style="color: #a020f0;">.or.</span> transa == <span style="color: #8b2252;">'n'</span>) <span style="color: #a020f0;">then</span>
transab = 0
<span style="color: #a020f0;">else if</span> (transa == <span style="color: #8b2252;">'T'</span> <span style="color: #a020f0;">.or.</span> transa == <span style="color: #8b2252;">'t'</span>) <span style="color: #a020f0;">then</span>
transab = 1
<span style="color: #a020f0;">else</span>
transab = -100
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">if</span> (transb == <span style="color: #8b2252;">'N'</span> <span style="color: #a020f0;">.or.</span> transb == <span style="color: #8b2252;">'n'</span>) <span style="color: #a020f0;">then</span>
<span style="color: #a020f0;">continue</span>
<span style="color: #a020f0;">else if</span> (transb == <span style="color: #8b2252;">'T'</span> <span style="color: #a020f0;">.or.</span> transb == <span style="color: #8b2252;">'t'</span>) <span style="color: #a020f0;">then</span>
transab = transab + 2
<span style="color: #a020f0;">else</span>
transab = -100
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">if</span> (transab &lt; 0) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_1
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">if</span> (<span style="color: #a020f0;">iand</span>(transab,1) == 0 <span style="color: #a020f0;">.and.</span> LDA &lt; 3) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_7
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">if</span> (<span style="color: #a020f0;">iand</span>(transab,1) == 1 <span style="color: #a020f0;">.and.</span> LDA &lt; m) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_7
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">if</span> (<span style="color: #a020f0;">iand</span>(transab,2) == 0 <span style="color: #a020f0;">.and.</span> LDA &lt; 3) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_7
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">if</span> (<span style="color: #a020f0;">iand</span>(transab,2) == 2 <span style="color: #a020f0;">.and.</span> LDA &lt; m) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_7
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">select case</span> (transab)
<span style="color: #a020f0;">case</span>(0)
<span style="color: #a020f0;">do</span> j=1,n
<span style="color: #a020f0;">do</span> i=1,m
x = A(1,i) - B(1,j)
y = A(2,i) - B(2,j)
z = A(3,i) - B(3,j)
C(i,j) = x*x + y*y + z*z
<span style="color: #a020f0;">end do</span>
<span style="color: #a020f0;">end do</span>
<span style="color: #a020f0;">case</span>(1)
<span style="color: #a020f0;">do</span> j=1,n
<span style="color: #a020f0;">do</span> i=1,m
x = A(i,1) - B(1,j)
y = A(i,2) - B(2,j)
z = A(i,3) - B(3,j)
C(i,j) = x*x + y*y + z*z
<span style="color: #a020f0;">end do</span>
<span style="color: #a020f0;">end do</span>
<span style="color: #a020f0;">case</span>(2)
<span style="color: #a020f0;">do</span> j=1,n
<span style="color: #a020f0;">do</span> i=1,m
x = A(1,i) - B(j,1)
y = A(2,i) - B(j,2)
z = A(3,i) - B(j,3)
C(i,j) = x*x + y*y + z*z
<span style="color: #a020f0;">end do</span>
<span style="color: #a020f0;">end do</span>
<span style="color: #a020f0;">case</span>(3)
<span style="color: #a020f0;">do</span> j=1,n
<span style="color: #a020f0;">do</span> i=1,m
x = A(i,1) - B(j,1)
y = A(i,2) - B(j,2)
z = A(i,3) - B(j,3)
C(i,j) = x*x + y*y + z*z
<span style="color: #a020f0;">end do</span>
<span style="color: #a020f0;">end do</span>
<span style="color: #a020f0;">end select</span>
<span style="color: #a020f0;">end function</span> <span style="color: #0000ff;">qmckl_distance_sq_f</span>
</pre>
</div>
</div>
<div id="outline-container-org8e3601b" class="outline-4">
<h4 id="org8e3601b"><span class="section-number-4">1.1.1</span> Performance</h4>
<div class="outline-text-4" id="text-1-1-1">
<p>
This function is more efficient when <code>A</code> and <code>B</code> are
transposed.
</p>
</div>
</div>
</div>
</div>
<div id="outline-container-org1dd726e" class="outline-2">
<h2 id="org1dd726e"><span class="section-number-2">2</span> Distance</h2>
<div class="outline-text-2" id="text-2">
</div>
<div id="outline-container-org50962f3" class="outline-3">
<h3 id="org50962f3"><span class="section-number-3">2.1</span> <code>qmckl_distance</code></h3>
<div class="outline-text-3" id="text-2-1">
<p>
<code>qmckl_distance</code> computes the matrix of the distances between all
pairs of points in two sets, one point within each set:
</p>
<p>
\[
C_{ij} = \sqrt{\sum_{k=1}^3 (A_{k,i}-B_{k,j})^2}
\]
</p>
<p>
If the input array is normal (<code>'N'</code>), the xyz coordinates are in
the leading dimension: <code>[n][3]</code> in C and <code>(3,n)</code> in Fortran.
</p>
<table id="org1e092a9" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
<colgroup>
<col class="org-left" />
<col class="org-left" />
<col class="org-left" />
<col class="org-left" />
</colgroup>
<thead>
<tr>
<th scope="col" class="org-left">Variable</th>
<th scope="col" class="org-left">Type</th>
<th scope="col" class="org-left">In/Out</th>
<th scope="col" class="org-left">Description</th>
</tr>
</thead>
<tbody>
<tr>
<td class="org-left"><code>context</code></td>
<td class="org-left"><code>qmckl_context</code></td>
<td class="org-left">in</td>
<td class="org-left">Global state</td>
</tr>
<tr>
<td class="org-left"><code>transa</code></td>
<td class="org-left"><code>char</code></td>
<td class="org-left">in</td>
<td class="org-left">Array <code>A</code> is <code>'N'</code>: Normal, <code>'T'</code>: Transposed</td>
</tr>
<tr>
<td class="org-left"><code>transb</code></td>
<td class="org-left"><code>char</code></td>
<td class="org-left">in</td>
<td class="org-left">Array <code>B</code> is <code>'N'</code>: Normal, <code>'T'</code>: Transposed</td>
</tr>
<tr>
<td class="org-left"><code>m</code></td>
<td class="org-left"><code>int64_t</code></td>
<td class="org-left">in</td>
<td class="org-left">Number of points in the first set</td>
</tr>
<tr>
<td class="org-left"><code>n</code></td>
<td class="org-left"><code>int64_t</code></td>
<td class="org-left">in</td>
<td class="org-left">Number of points in the second set</td>
</tr>
<tr>
<td class="org-left"><code>A</code></td>
<td class="org-left"><code>double[][lda]</code></td>
<td class="org-left">in</td>
<td class="org-left">Array containing the \(m \times 3\) matrix \(A\)</td>
</tr>
<tr>
<td class="org-left"><code>lda</code></td>
<td class="org-left"><code>int64_t</code></td>
<td class="org-left">in</td>
<td class="org-left">Leading dimension of array <code>A</code></td>
</tr>
<tr>
<td class="org-left"><code>B</code></td>
<td class="org-left"><code>double[][ldb]</code></td>
<td class="org-left">in</td>
<td class="org-left">Array containing the \(n \times 3\) matrix \(B\)</td>
</tr>
<tr>
<td class="org-left"><code>ldb</code></td>
<td class="org-left"><code>int64_t</code></td>
<td class="org-left">in</td>
<td class="org-left">Leading dimension of array <code>B</code></td>
</tr>
<tr>
<td class="org-left"><code>C</code></td>
<td class="org-left"><code>double[n][ldc]</code></td>
<td class="org-left">out</td>
<td class="org-left">Array containing the \(m \times n\) matrix \(C\)</td>
</tr>
<tr>
<td class="org-left"><code>ldc</code></td>
<td class="org-left"><code>int64_t</code></td>
<td class="org-left">in</td>
<td class="org-left">Leading dimension of array <code>C</code></td>
</tr>
</tbody>
</table>
</div>
<div id="outline-container-org5c62cbe" class="outline-4">
<h4 id="org5c62cbe"><span class="section-number-4">2.1.1</span> Requirements</h4>
<div class="outline-text-4" id="text-2-1-1">
<ul class="org-ul">
<li><code>context</code> is not <code>QMCKL_NULL_CONTEXT</code></li>
<li><code>m &gt; 0</code></li>
<li><code>n &gt; 0</code></li>
<li><code>lda &gt;= 3</code> if <code>transa == 'N'</code></li>
<li><code>lda &gt;= m</code> if <code>transa == 'T'</code></li>
<li><code>ldb &gt;= 3</code> if <code>transb == 'N'</code></li>
<li><code>ldb &gt;= n</code> if <code>transb == 'T'</code></li>
<li><code>ldc &gt;= m</code></li>
<li><code>A</code> is allocated with at least \(3 \times m \times 8\) bytes</li>
<li><code>B</code> is allocated with at least \(3 \times n \times 8\) bytes</li>
<li><code>C</code> is allocated with at least \(m \times n \times 8\) bytes</li>
</ul>
</div>
</div>
<div id="outline-container-orgb166008" class="outline-4">
<h4 id="orgb166008"><span class="section-number-4">2.1.2</span> C header</h4>
<div class="outline-text-4" id="text-2-1-2">
<div class="org-src-container">
<pre class="src src-c"><span style="color: #228b22;">qmckl_exit_code</span> <span style="color: #0000ff;">qmckl_distance</span> (
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">qmckl_context</span> <span style="color: #a0522d;">context</span>,
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">char</span> <span style="color: #a0522d;">transa</span>,
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">char</span> <span style="color: #a0522d;">transb</span>,
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">int64_t</span> <span style="color: #a0522d;">m</span>,
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">int64_t</span> <span style="color: #a0522d;">n</span>,
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">double</span>* <span style="color: #a0522d;">A</span>,
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">int64_t</span> <span style="color: #a0522d;">lda</span>,
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">double</span>* <span style="color: #a0522d;">B</span>,
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">int64_t</span> <span style="color: #a0522d;">ldb</span>,
<span style="color: #228b22;">double</span>* <span style="color: #a020f0;">const</span> <span style="color: #a0522d;">C</span>,
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">int64_t</span> <span style="color: #a0522d;">ldc</span> );
</pre>
</div>
</div>
</div>
<div id="outline-container-org341b437" class="outline-4">
<h4 id="org341b437"><span class="section-number-4">2.1.3</span> Source</h4>
<div class="outline-text-4" id="text-2-1-3">
<div class="org-src-container">
<pre class="src src-f90"><span style="color: #228b22;">integer</span><span style="color: #a0522d;"> function qmckl_distance_f(context, transa, transb, m, n, </span><span style="color: #a020f0;">&amp;</span>
A, LDA, B, LDB, C, LDC) <span style="color: #a020f0;">&amp;</span>
<span style="color: #a020f0;">result</span>(info)
<span style="color: #a020f0;">use</span> <span style="color: #0000ff;">qmckl</span>
<span style="color: #a020f0;">implicit</span> <span style="color: #228b22;">none</span>
<span style="color: #228b22;">integer</span>(qmckl_context) , <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> context</span>
<span style="color: #228b22;">character</span> , <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> transa, transb</span>
<span style="color: #228b22;">integer</span>*8 , <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> m, n</span>
<span style="color: #228b22;">integer</span>*8 , <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> lda</span>
<span style="color: #228b22;">real</span>*8 , <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> A(lda,*)</span>
<span style="color: #228b22;">integer</span>*8 , <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> ldb</span>
<span style="color: #228b22;">real</span>*8 , <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> B(ldb,*)</span>
<span style="color: #228b22;">integer</span>*8 , <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> ldc</span>
<span style="color: #228b22;">real</span>*8 , <span style="color: #a020f0;">intent</span>(out) ::<span style="color: #a0522d;"> C(ldc,*)</span>
<span style="color: #228b22;">integer</span>*8 ::<span style="color: #a0522d;"> i,j</span>
<span style="color: #228b22;">real</span>*8 ::<span style="color: #a0522d;"> x, y, z</span>
<span style="color: #228b22;">integer</span> ::<span style="color: #a0522d;"> transab</span>
info = QMCKL_SUCCESS
<span style="color: #a020f0;">if</span> (context == QMCKL_NULL_CONTEXT) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_CONTEXT
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">if</span> (m &lt;= 0_8) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_4
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">if</span> (n &lt;= 0_8) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_5
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">if</span> (transa == <span style="color: #8b2252;">'N'</span> <span style="color: #a020f0;">.or.</span> transa == <span style="color: #8b2252;">'n'</span>) <span style="color: #a020f0;">then</span>
transab = 0
<span style="color: #a020f0;">else if</span> (transa == <span style="color: #8b2252;">'T'</span> <span style="color: #a020f0;">.or.</span> transa == <span style="color: #8b2252;">'t'</span>) <span style="color: #a020f0;">then</span>
transab = 1
<span style="color: #a020f0;">else</span>
transab = -100
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">if</span> (transb == <span style="color: #8b2252;">'N'</span> <span style="color: #a020f0;">.or.</span> transb == <span style="color: #8b2252;">'n'</span>) <span style="color: #a020f0;">then</span>
<span style="color: #a020f0;">continue</span>
<span style="color: #a020f0;">else if</span> (transb == <span style="color: #8b2252;">'T'</span> <span style="color: #a020f0;">.or.</span> transb == <span style="color: #8b2252;">'t'</span>) <span style="color: #a020f0;">then</span>
transab = transab + 2
<span style="color: #a020f0;">else</span>
transab = -100
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">if</span> (transab &lt; 0) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_1
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
! <span style="color: #b22222;">check for LDA</span>
<span style="color: #a020f0;">if</span> (<span style="color: #a020f0;">iand</span>(transab,1) == 0 <span style="color: #a020f0;">.and.</span> LDA &lt; 3) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_7
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">if</span> (<span style="color: #a020f0;">iand</span>(transab,1) == 1 <span style="color: #a020f0;">.and.</span> LDA &lt; m) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_7
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">if</span> (<span style="color: #a020f0;">iand</span>(transab,2) == 0 <span style="color: #a020f0;">.and.</span> LDA &lt; 3) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_7
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">if</span> (<span style="color: #a020f0;">iand</span>(transab,2) == 2 <span style="color: #a020f0;">.and.</span> LDA &lt; m) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_7
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
! <span style="color: #b22222;">check for LDB</span>
<span style="color: #a020f0;">if</span> (<span style="color: #a020f0;">iand</span>(transab,1) == 0 <span style="color: #a020f0;">.and.</span> LDB &lt; 3) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_9
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">if</span> (<span style="color: #a020f0;">iand</span>(transab,1) == 1 <span style="color: #a020f0;">.and.</span> LDB &lt; n) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_9
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">if</span> (<span style="color: #a020f0;">iand</span>(transab,2) == 0 <span style="color: #a020f0;">.and.</span> LDB &lt; 3) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_9
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">if</span> (<span style="color: #a020f0;">iand</span>(transab,2) == 2 <span style="color: #a020f0;">.and.</span> LDB &lt; n) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_9
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
! <span style="color: #b22222;">check for LDC</span>
<span style="color: #a020f0;">if</span> (LDC &lt; m) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_11
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">select case</span> (transab)
<span style="color: #a020f0;">case</span>(0)
<span style="color: #a020f0;">do</span> j=1,n
<span style="color: #a020f0;">do</span> i=1,m
x = A(1,i) - B(1,j)
y = A(2,i) - B(2,j)
z = A(3,i) - B(3,j)
C(i,j) = x*x + y*y + z*z
<span style="color: #a020f0;">end do</span>
C(:,j) = dsqrt(C(:,j))
<span style="color: #a020f0;">end do</span>
<span style="color: #a020f0;">case</span>(1)
<span style="color: #a020f0;">do</span> j=1,n
<span style="color: #a020f0;">do</span> i=1,m
x = A(i,1) - B(1,j)
y = A(i,2) - B(2,j)
z = A(i,3) - B(3,j)
C(i,j) = x*x + y*y + z*z
<span style="color: #a020f0;">end do</span>
C(:,j) = dsqrt(C(:,j))
<span style="color: #a020f0;">end do</span>
<span style="color: #a020f0;">case</span>(2)
<span style="color: #a020f0;">do</span> j=1,n
<span style="color: #a020f0;">do</span> i=1,m
x = A(1,i) - B(j,1)
y = A(2,i) - B(j,2)
z = A(3,i) - B(j,3)
C(i,j) = x*x + y*y + z*z
<span style="color: #a020f0;">end do</span>
C(:,j) = dsqrt(C(:,j))
<span style="color: #a020f0;">end do</span>
<span style="color: #a020f0;">case</span>(3)
<span style="color: #a020f0;">do</span> j=1,n
<span style="color: #a020f0;">do</span> i=1,m
x = A(i,1) - B(j,1)
y = A(i,2) - B(j,2)
z = A(i,3) - B(j,3)
C(i,j) = x*x + y*y + z*z
<span style="color: #a020f0;">end do</span>
C(:,j) = dsqrt(C(:,j))
<span style="color: #a020f0;">end do</span>
<span style="color: #a020f0;">end select</span>
<span style="color: #a020f0;">end function</span> <span style="color: #0000ff;">qmckl_distance_f</span>
</pre>
</div>
</div>
</div>
<div id="outline-container-orgaee353c" class="outline-4">
<h4 id="orgaee353c"><span class="section-number-4">2.1.4</span> Performance</h4>
<div class="outline-text-4" id="text-2-1-4">
<p>
This function is more efficient when <code>A</code> and <code>B</code> are transposed.
</p>
</div>
</div>
</div>
</div>
<div id="outline-container-org508d7b6" class="outline-2">
<h2 id="org508d7b6"><span class="section-number-2">3</span> Rescaled Distance</h2>
<div class="outline-text-2" id="text-3">
</div>
<div id="outline-container-org41c1072" class="outline-3">
<h3 id="org41c1072"><span class="section-number-3">3.1</span> <code>qmckl_distance_rescaled</code></h3>
<div class="outline-text-3" id="text-3-1">
<p>
<code>qmckl_distance_rescaled</code> computes the matrix of the rescaled distances between all
pairs of points in two sets, one point within each set:
</p>
<p>
\[
C_{ij} = \left( 1 - \exp \left(-\kappa C_{ij} \right) \right)/\kappa
\]
</p>
<p>
If the input array is normal (<code>'N'</code>), the xyz coordinates are in
the leading dimension: <code>[n][3]</code> in C and <code>(3,n)</code> in Fortran.
</p>
<table id="org4f24625" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
<colgroup>
<col class="org-left" />
<col class="org-left" />
<col class="org-left" />
<col class="org-left" />
</colgroup>
<thead>
<tr>
<th scope="col" class="org-left">Variable</th>
<th scope="col" class="org-left">Type</th>
<th scope="col" class="org-left">In/Out</th>
<th scope="col" class="org-left">Description</th>
</tr>
</thead>
<tbody>
<tr>
<td class="org-left"><code>context</code></td>
<td class="org-left"><code>qmckl_context</code></td>
<td class="org-left">in</td>
<td class="org-left">Global state</td>
</tr>
<tr>
<td class="org-left"><code>transa</code></td>
<td class="org-left"><code>char</code></td>
<td class="org-left">in</td>
<td class="org-left">Array <code>A</code> is <code>'N'</code>: Normal, <code>'T'</code>: Transposed</td>
</tr>
<tr>
<td class="org-left"><code>transb</code></td>
<td class="org-left"><code>char</code></td>
<td class="org-left">in</td>
<td class="org-left">Array <code>B</code> is <code>'N'</code>: Normal, <code>'T'</code>: Transposed</td>
</tr>
<tr>
<td class="org-left"><code>m</code></td>
<td class="org-left"><code>int64_t</code></td>
<td class="org-left">in</td>
<td class="org-left">Number of points in the first set</td>
</tr>
<tr>
<td class="org-left"><code>n</code></td>
<td class="org-left"><code>int64_t</code></td>
<td class="org-left">in</td>
<td class="org-left">Number of points in the second set</td>
</tr>
<tr>
<td class="org-left"><code>A</code></td>
<td class="org-left"><code>double[][lda]</code></td>
<td class="org-left">in</td>
<td class="org-left">Array containing the \(m \times 3\) matrix \(A\)</td>
</tr>
<tr>
<td class="org-left"><code>lda</code></td>
<td class="org-left"><code>int64_t</code></td>
<td class="org-left">in</td>
<td class="org-left">Leading dimension of array <code>A</code></td>
</tr>
<tr>
<td class="org-left"><code>B</code></td>
<td class="org-left"><code>double[][ldb]</code></td>
<td class="org-left">in</td>
<td class="org-left">Array containing the \(n \times 3\) matrix \(B\)</td>
</tr>
<tr>
<td class="org-left"><code>ldb</code></td>
<td class="org-left"><code>int64_t</code></td>
<td class="org-left">in</td>
<td class="org-left">Leading dimension of array <code>B</code></td>
</tr>
<tr>
<td class="org-left"><code>C</code></td>
<td class="org-left"><code>double[n][ldc]</code></td>
<td class="org-left">out</td>
<td class="org-left">Array containing the \(m \times n\) matrix \(C\)</td>
</tr>
<tr>
<td class="org-left"><code>ldc</code></td>
<td class="org-left"><code>int64_t</code></td>
<td class="org-left">in</td>
<td class="org-left">Leading dimension of array <code>C</code></td>
</tr>
<tr>
<td class="org-left"><code>rescale_factor_kappa</code></td>
<td class="org-left"><code>double</code></td>
<td class="org-left">in</td>
<td class="org-left">Factor for calculating rescaled distances</td>
</tr>
</tbody>
</table>
</div>
<div id="outline-container-org1a3fcea" class="outline-4">
<h4 id="org1a3fcea"><span class="section-number-4">3.1.1</span> Requirements</h4>
<div class="outline-text-4" id="text-3-1-1">
<ul class="org-ul">
<li><code>context</code> is not <code>QMCKL_NULL_CONTEXT</code></li>
<li><code>m &gt; 0</code></li>
<li><code>n &gt; 0</code></li>
<li><code>lda &gt;= 3</code> if <code>transa == 'N'</code></li>
<li><code>lda &gt;= m</code> if <code>transa == 'T'</code></li>
<li><code>ldb &gt;= 3</code> if <code>transb == 'N'</code></li>
<li><code>ldb &gt;= n</code> if <code>transb == 'T'</code></li>
<li><code>ldc &gt;= m</code></li>
<li><code>A</code> is allocated with at least \(3 \times m \times 8\) bytes</li>
<li><code>B</code> is allocated with at least \(3 \times n \times 8\) bytes</li>
<li><code>C</code> is allocated with at least \(m \times n \times 8\) bytes</li>
</ul>
</div>
</div>
<div id="outline-container-org41fbb84" class="outline-4">
<h4 id="org41fbb84"><span class="section-number-4">3.1.2</span> C header</h4>
<div class="outline-text-4" id="text-3-1-2">
<div class="org-src-container">
<pre class="src src-c"><span style="color: #228b22;">qmckl_exit_code</span> <span style="color: #0000ff;">qmckl_distance_rescaled</span> (
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">qmckl_context</span> <span style="color: #a0522d;">context</span>,
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">char</span> <span style="color: #a0522d;">transa</span>,
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">char</span> <span style="color: #a0522d;">transb</span>,
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">int64_t</span> <span style="color: #a0522d;">m</span>,
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">int64_t</span> <span style="color: #a0522d;">n</span>,
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">double</span>* <span style="color: #a0522d;">A</span>,
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">int64_t</span> <span style="color: #a0522d;">lda</span>,
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">double</span>* <span style="color: #a0522d;">B</span>,
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">int64_t</span> <span style="color: #a0522d;">ldb</span>,
<span style="color: #228b22;">double</span>* <span style="color: #a020f0;">const</span> <span style="color: #a0522d;">C</span>,
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">int64_t</span> <span style="color: #a0522d;">ldc</span>,
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">double</span> <span style="color: #a0522d;">rescale_factor_kappa</span> );
</pre>
</div>
</div>
</div>
<div id="outline-container-org98b3fc8" class="outline-4">
<h4 id="org98b3fc8"><span class="section-number-4">3.1.3</span> Source</h4>
<div class="outline-text-4" id="text-3-1-3">
<div class="org-src-container">
<pre class="src src-f90"><span style="color: #228b22;">integer</span><span style="color: #a0522d;"> function qmckl_distance_rescaled_f(context, transa, transb, m, n, </span><span style="color: #a020f0;">&amp;</span>
A, LDA, B, LDB, C, LDC, rescale_factor_kappa) <span style="color: #a020f0;">&amp;</span>
<span style="color: #a020f0;">result</span>(info)
<span style="color: #a020f0;">use</span> <span style="color: #0000ff;">qmckl</span>
<span style="color: #a020f0;">implicit</span> <span style="color: #228b22;">none</span>
<span style="color: #228b22;">integer</span>(qmckl_context) , <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> context</span>
<span style="color: #228b22;">character</span> , <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> transa, transb</span>
<span style="color: #228b22;">integer</span>*8 , <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> m, n</span>
<span style="color: #228b22;">integer</span>*8 , <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> lda</span>
<span style="color: #228b22;">real</span>*8 , <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> A(lda,*)</span>
<span style="color: #228b22;">integer</span>*8 , <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> ldb</span>
<span style="color: #228b22;">real</span>*8 , <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> B(ldb,*)</span>
<span style="color: #228b22;">integer</span>*8 , <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> ldc</span>
<span style="color: #228b22;">real</span>*8 , <span style="color: #a020f0;">intent</span>(out) ::<span style="color: #a0522d;"> C(ldc,*)</span>
<span style="color: #228b22;">real</span>*8 , <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> rescale_factor_kappa</span>
<span style="color: #228b22;">integer</span>*8 ::<span style="color: #a0522d;"> i,j</span>
<span style="color: #228b22;">real</span>*8 ::<span style="color: #a0522d;"> x, y, z, dist, rescale_factor_kappa_inv</span>
<span style="color: #228b22;">integer</span> ::<span style="color: #a0522d;"> transab</span>
rescale_factor_kappa_inv = 1.0d0/rescale_factor_kappa;
info = QMCKL_SUCCESS
<span style="color: #a020f0;">if</span> (context == QMCKL_NULL_CONTEXT) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_CONTEXT
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">if</span> (m &lt;= 0_8) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_4
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">if</span> (n &lt;= 0_8) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_5
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">if</span> (transa == <span style="color: #8b2252;">'N'</span> <span style="color: #a020f0;">.or.</span> transa == <span style="color: #8b2252;">'n'</span>) <span style="color: #a020f0;">then</span>
transab = 0
<span style="color: #a020f0;">else if</span> (transa == <span style="color: #8b2252;">'T'</span> <span style="color: #a020f0;">.or.</span> transa == <span style="color: #8b2252;">'t'</span>) <span style="color: #a020f0;">then</span>
transab = 1
<span style="color: #a020f0;">else</span>
transab = -100
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">if</span> (transb == <span style="color: #8b2252;">'N'</span> <span style="color: #a020f0;">.or.</span> transb == <span style="color: #8b2252;">'n'</span>) <span style="color: #a020f0;">then</span>
<span style="color: #a020f0;">continue</span>
<span style="color: #a020f0;">else if</span> (transb == <span style="color: #8b2252;">'T'</span> <span style="color: #a020f0;">.or.</span> transb == <span style="color: #8b2252;">'t'</span>) <span style="color: #a020f0;">then</span>
transab = transab + 2
<span style="color: #a020f0;">else</span>
transab = -100
<span style="color: #a020f0;">endif</span>
! <span style="color: #b22222;">check for LDA</span>
<span style="color: #a020f0;">if</span> (transab &lt; 0) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_1
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">if</span> (<span style="color: #a020f0;">iand</span>(transab,1) == 0 <span style="color: #a020f0;">.and.</span> LDA &lt; 3) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_7
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">if</span> (<span style="color: #a020f0;">iand</span>(transab,1) == 1 <span style="color: #a020f0;">.and.</span> LDA &lt; m) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_7
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">if</span> (<span style="color: #a020f0;">iand</span>(transab,2) == 0 <span style="color: #a020f0;">.and.</span> LDA &lt; 3) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_7
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">if</span> (<span style="color: #a020f0;">iand</span>(transab,2) == 2 <span style="color: #a020f0;">.and.</span> LDA &lt; m) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_7
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
! <span style="color: #b22222;">check for LDB</span>
<span style="color: #a020f0;">if</span> (<span style="color: #a020f0;">iand</span>(transab,1) == 0 <span style="color: #a020f0;">.and.</span> LDB &lt; 3) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_9
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">if</span> (<span style="color: #a020f0;">iand</span>(transab,1) == 1 <span style="color: #a020f0;">.and.</span> LDB &lt; n) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_9
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">if</span> (<span style="color: #a020f0;">iand</span>(transab,2) == 0 <span style="color: #a020f0;">.and.</span> LDB &lt; 3) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_9
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">if</span> (<span style="color: #a020f0;">iand</span>(transab,2) == 2 <span style="color: #a020f0;">.and.</span> LDB &lt; n) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_9
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
! <span style="color: #b22222;">check for LDC</span>
<span style="color: #a020f0;">if</span> (LDC &lt; m) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_11
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">select case</span> (transab)
<span style="color: #a020f0;">case</span>(0)
<span style="color: #a020f0;">do</span> j=1,n
<span style="color: #a020f0;">do</span> i=1,m
x = A(1,i) - B(1,j)
y = A(2,i) - B(2,j)
z = A(3,i) - B(3,j)
dist = dsqrt(x*x + y*y + z*z)
C(i,j) = (1.0d0 - dexp(-rescale_factor_kappa * dist)) * rescale_factor_kappa_inv
<span style="color: #a020f0;">end do</span>
<span style="color: #a020f0;">end do</span>
<span style="color: #a020f0;">case</span>(1)
<span style="color: #a020f0;">do</span> j=1,n
<span style="color: #a020f0;">do</span> i=1,m
x = A(i,1) - B(1,j)
y = A(i,2) - B(2,j)
z = A(i,3) - B(3,j)
dist = dsqrt(x*x + y*y + z*z)
C(i,j) = (1.0d0 - dexp(-rescale_factor_kappa * dist)) * rescale_factor_kappa_inv
<span style="color: #a020f0;">end do</span>
<span style="color: #a020f0;">end do</span>
<span style="color: #a020f0;">case</span>(2)
<span style="color: #a020f0;">do</span> j=1,n
<span style="color: #a020f0;">do</span> i=1,m
x = A(1,i) - B(j,1)
y = A(2,i) - B(j,2)
z = A(3,i) - B(j,3)
dist = dsqrt(x*x + y*y + z*z)
C(i,j) = (1.0d0 - dexp(-rescale_factor_kappa * dist)) * rescale_factor_kappa_inv
<span style="color: #a020f0;">end do</span>
<span style="color: #a020f0;">end do</span>
<span style="color: #a020f0;">case</span>(3)
<span style="color: #a020f0;">do</span> j=1,n
<span style="color: #a020f0;">do</span> i=1,m
x = A(i,1) - B(j,1)
y = A(i,2) - B(j,2)
z = A(i,3) - B(j,3)
dist = dsqrt(x*x + y*y + z*z)
C(i,j) = (1.0d0 - dexp(-rescale_factor_kappa * dist)) * rescale_factor_kappa_inv
<span style="color: #a020f0;">end do</span>
<span style="color: #a020f0;">end do</span>
<span style="color: #a020f0;">end select</span>
<span style="color: #a020f0;">end function</span> <span style="color: #0000ff;">qmckl_distance_rescaled_f</span>
</pre>
</div>
</div>
</div>
<div id="outline-container-org6a8051b" class="outline-4">
<h4 id="org6a8051b"><span class="section-number-4">3.1.4</span> Performance</h4>
<div class="outline-text-4" id="text-3-1-4">
<p>
This function is more efficient when <code>A</code> and <code>B</code> are transposed.
</p>
</div>
</div>
</div>
</div>
<div id="outline-container-org0aa544a" class="outline-2">
<h2 id="org0aa544a"><span class="section-number-2">4</span> Rescaled Distance Derivatives</h2>
<div class="outline-text-2" id="text-4">
</div>
<div id="outline-container-orgbeb1322" class="outline-3">
<h3 id="orgbeb1322"><span class="section-number-3">4.1</span> <code>qmckl_distance_rescaled_deriv_e</code></h3>
<div class="outline-text-3" id="text-4-1">
<p>
<code>qmckl_distance_rescaled_deriv_e</code> computes the matrix of the gradient and laplacian of the
rescaled distance with respect to the electron coordinates. The derivative is a rank 3 tensor.
The first dimension has a dimension of 4 of which the first three coordinates
contains the gradient vector and the last index is the laplacian.
</p>
<p>
\[
C_{ij} = \left( 1 - \exp{-\kappa C_{ij}}\right)/\kappa
\]
</p>
<p>
Here the gradient is defined as follows:
</p>
<p>
\[
\nabla (C_{ij}(\mathbf{r}_{ee})) = \left(\frac{\delta C_{ij}(\mathbf{r}_{ee})}{\delta x},\frac{\delta C_{ij}(\mathbf{r}_{ee})}{\delta y},\frac{\delta C_{ij}(\mathbf{r}_{ee})}{\delta z} \right)
\]
and the laplacian is defined as follows:
</p>
<p>
\[
\triangle (C_{ij}(r_{ee})) = \frac{\delta^2}{\delta x^2} + \frac{\delta^2}{\delta y^2} + \frac{\delta^2}{\delta z^2}
\]
</p>
<p>
Using the above three formulae, the expression for the gradient and laplacian is
as follows:
</p>
<p>
\[
\frac{\delta C_{ij}(\mathbf{r}_{ee})}{\delta x} = \frac{|(x_i - x_j)|}{r_{ij}} (1 - \kappa R_{ij})
\]
</p>
<p>
\[
\frac{\delta C_{ij}(\mathbf{r}_{ee})}{\delta y} = \frac{|(y_i - y_j)|}{r_{ij}} (1 - \kappa R_{ij})
\]
</p>
<p>
\[
\frac{\delta C_{ij}(\mathbf{r}_{ee})}{\delta z} = \frac{|(z_i - z_j)|}{r_{ij}} (1 - \kappa R_{ij})
\]
</p>
<p>
\[
\Delta(C_{ij}(r_{ee}) = \left[ \frac{2}{r_{ij}} - \kappa \right] (1-\kappa R_{ij})
\]
</p>
<p>
If the input array is normal (<code>'N'</code>), the xyz coordinates are in
the leading dimension: <code>[n][3]</code> in C and <code>(3,n)</code> in Fortran.
</p>
<table id="orgf471b89" border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
<colgroup>
<col class="org-left" />
<col class="org-left" />
<col class="org-left" />
<col class="org-left" />
</colgroup>
<thead>
<tr>
<th scope="col" class="org-left">Variable</th>
<th scope="col" class="org-left">Type</th>
<th scope="col" class="org-left">In/Out</th>
<th scope="col" class="org-left">Description</th>
</tr>
</thead>
<tbody>
<tr>
<td class="org-left"><code>context</code></td>
<td class="org-left"><code>qmckl_context</code></td>
<td class="org-left">in</td>
<td class="org-left">Global state</td>
</tr>
<tr>
<td class="org-left"><code>transa</code></td>
<td class="org-left"><code>char</code></td>
<td class="org-left">in</td>
<td class="org-left">Array <code>A</code> is <code>'N'</code>: Normal, <code>'T'</code>: Transposed</td>
</tr>
<tr>
<td class="org-left"><code>transb</code></td>
<td class="org-left"><code>char</code></td>
<td class="org-left">in</td>
<td class="org-left">Array <code>B</code> is <code>'N'</code>: Normal, <code>'T'</code>: Transposed</td>
</tr>
<tr>
<td class="org-left"><code>m</code></td>
<td class="org-left"><code>int64_t</code></td>
<td class="org-left">in</td>
<td class="org-left">Number of points in the first set</td>
</tr>
<tr>
<td class="org-left"><code>n</code></td>
<td class="org-left"><code>int64_t</code></td>
<td class="org-left">in</td>
<td class="org-left">Number of points in the second set</td>
</tr>
<tr>
<td class="org-left"><code>A</code></td>
<td class="org-left"><code>double[][lda]</code></td>
<td class="org-left">in</td>
<td class="org-left">Array containing the \(m \times 3\) matrix \(A\)</td>
</tr>
<tr>
<td class="org-left"><code>lda</code></td>
<td class="org-left"><code>int64_t</code></td>
<td class="org-left">in</td>
<td class="org-left">Leading dimension of array <code>A</code></td>
</tr>
<tr>
<td class="org-left"><code>B</code></td>
<td class="org-left"><code>double[][ldb]</code></td>
<td class="org-left">in</td>
<td class="org-left">Array containing the \(n \times 3\) matrix \(B\)</td>
</tr>
<tr>
<td class="org-left"><code>ldb</code></td>
<td class="org-left"><code>int64_t</code></td>
<td class="org-left">in</td>
<td class="org-left">Leading dimension of array <code>B</code></td>
</tr>
<tr>
<td class="org-left"><code>C</code></td>
<td class="org-left"><code>double[4][n][ldc]</code></td>
<td class="org-left">out</td>
<td class="org-left">Array containing the \(4 \times m \times n\) matrix \(C\)</td>
</tr>
<tr>
<td class="org-left"><code>ldc</code></td>
<td class="org-left"><code>int64_t</code></td>
<td class="org-left">in</td>
<td class="org-left">Leading dimension of array <code>C</code></td>
</tr>
<tr>
<td class="org-left"><code>rescale_factor_kappa</code></td>
<td class="org-left"><code>double</code></td>
<td class="org-left">in</td>
<td class="org-left">Factor for calculating rescaled distances derivatives</td>
</tr>
</tbody>
</table>
<p>
Requirements:
</p>
<ul class="org-ul">
<li><code>context</code> is not <code>QMCKL_NULL_CONTEXT</code></li>
<li><code>m &gt; 0</code></li>
<li><code>n &gt; 0</code></li>
<li><code>lda &gt;= 3</code> if <code>transa == 'N'</code></li>
<li><code>lda &gt;= m</code> if <code>transa == 'T'</code></li>
<li><code>ldb &gt;= 3</code> if <code>transb == 'N'</code></li>
<li><code>ldb &gt;= n</code> if <code>transb == 'T'</code></li>
<li><code>ldc &gt;= m</code></li>
<li><code>A</code> is allocated with at least \(3 \times m \times 8\) bytes</li>
<li><code>B</code> is allocated with at least \(3 \times n \times 8\) bytes</li>
<li><code>C</code> is allocated with at least \(4 \times m \times n \times 8\) bytes</li>
</ul>
<div class="org-src-container">
<pre class="src src-c"><span style="color: #228b22;">qmckl_exit_code</span> <span style="color: #0000ff;">qmckl_distance_rescaled_deriv_e</span> (
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">qmckl_context</span> <span style="color: #a0522d;">context</span>,
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">char</span> <span style="color: #a0522d;">transa</span>,
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">char</span> <span style="color: #a0522d;">transb</span>,
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">int64_t</span> <span style="color: #a0522d;">m</span>,
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">int64_t</span> <span style="color: #a0522d;">n</span>,
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">double</span>* <span style="color: #a0522d;">A</span>,
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">int64_t</span> <span style="color: #a0522d;">lda</span>,
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">double</span>* <span style="color: #a0522d;">B</span>,
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">int64_t</span> <span style="color: #a0522d;">ldb</span>,
<span style="color: #228b22;">double</span>* <span style="color: #a020f0;">const</span> <span style="color: #a0522d;">C</span>,
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">int64_t</span> <span style="color: #a0522d;">ldc</span>,
<span style="color: #a020f0;">const</span> <span style="color: #228b22;">double</span> <span style="color: #a0522d;">rescale_factor_kappa</span> );
</pre>
</div>
<div class="org-src-container">
<pre class="src src-f90"><span style="color: #228b22;">integer</span><span style="color: #a0522d;"> function qmckl_distance_rescaled_deriv_e_f(context, transa, transb, m, n, </span><span style="color: #a020f0;">&amp;</span>
A, LDA, B, LDB, C, LDC, rescale_factor_kappa) <span style="color: #a020f0;">&amp;</span>
<span style="color: #a020f0;">result</span>(info)
<span style="color: #a020f0;">use</span> <span style="color: #0000ff;">qmckl</span>
<span style="color: #a020f0;">implicit</span> <span style="color: #228b22;">none</span>
<span style="color: #228b22;">integer</span>(qmckl_context) , <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> context</span>
<span style="color: #228b22;">character</span> , <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> transa, transb</span>
<span style="color: #228b22;">integer</span>*8 , <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> m, n</span>
<span style="color: #228b22;">integer</span>*8 , <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> lda</span>
<span style="color: #228b22;">real</span>*8 , <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> A(lda,*)</span>
<span style="color: #228b22;">integer</span>*8 , <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> ldb</span>
<span style="color: #228b22;">real</span>*8 , <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> B(ldb,*)</span>
<span style="color: #228b22;">integer</span>*8 , <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> ldc</span>
<span style="color: #228b22;">real</span>*8 , <span style="color: #a020f0;">intent</span>(out) ::<span style="color: #a0522d;"> C(4,ldc,*)</span>
<span style="color: #228b22;">real</span>*8 , <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> rescale_factor_kappa</span>
<span style="color: #228b22;">integer</span>*8 ::<span style="color: #a0522d;"> i,j</span>
<span style="color: #228b22;">real</span>*8 ::<span style="color: #a0522d;"> x, y, z, dist, dist_inv</span>
<span style="color: #228b22;">real</span>*8 ::<span style="color: #a0522d;"> rescale_factor_kappa_inv, rij</span>
<span style="color: #228b22;">integer</span> ::<span style="color: #a0522d;"> transab</span>
rescale_factor_kappa_inv = 1.0d0/rescale_factor_kappa;
info = QMCKL_SUCCESS
<span style="color: #a020f0;">if</span> (context == QMCKL_NULL_CONTEXT) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_CONTEXT
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">if</span> (m &lt;= 0_8) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_4
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">if</span> (n &lt;= 0_8) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_5
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">if</span> (transa == <span style="color: #8b2252;">'N'</span> <span style="color: #a020f0;">.or.</span> transa == <span style="color: #8b2252;">'n'</span>) <span style="color: #a020f0;">then</span>
transab = 0
<span style="color: #a020f0;">else if</span> (transa == <span style="color: #8b2252;">'T'</span> <span style="color: #a020f0;">.or.</span> transa == <span style="color: #8b2252;">'t'</span>) <span style="color: #a020f0;">then</span>
transab = 1
<span style="color: #a020f0;">else</span>
transab = -100
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">if</span> (transb == <span style="color: #8b2252;">'N'</span> <span style="color: #a020f0;">.or.</span> transb == <span style="color: #8b2252;">'n'</span>) <span style="color: #a020f0;">then</span>
<span style="color: #a020f0;">continue</span>
<span style="color: #a020f0;">else if</span> (transb == <span style="color: #8b2252;">'T'</span> <span style="color: #a020f0;">.or.</span> transb == <span style="color: #8b2252;">'t'</span>) <span style="color: #a020f0;">then</span>
transab = transab + 2
<span style="color: #a020f0;">else</span>
transab = -100
<span style="color: #a020f0;">endif</span>
! <span style="color: #b22222;">check for LDA</span>
<span style="color: #a020f0;">if</span> (transab &lt; 0) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_1
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">if</span> (<span style="color: #a020f0;">iand</span>(transab,1) == 0 <span style="color: #a020f0;">.and.</span> LDA &lt; 3) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_7
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">if</span> (<span style="color: #a020f0;">iand</span>(transab,1) == 1 <span style="color: #a020f0;">.and.</span> LDA &lt; m) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_7
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">if</span> (<span style="color: #a020f0;">iand</span>(transab,2) == 0 <span style="color: #a020f0;">.and.</span> LDA &lt; 3) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_7
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">if</span> (<span style="color: #a020f0;">iand</span>(transab,2) == 2 <span style="color: #a020f0;">.and.</span> LDA &lt; m) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_7
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
! <span style="color: #b22222;">check for LDB</span>
<span style="color: #a020f0;">if</span> (<span style="color: #a020f0;">iand</span>(transab,1) == 0 <span style="color: #a020f0;">.and.</span> LDB &lt; 3) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_9
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">if</span> (<span style="color: #a020f0;">iand</span>(transab,1) == 1 <span style="color: #a020f0;">.and.</span> LDB &lt; n) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_9
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">if</span> (<span style="color: #a020f0;">iand</span>(transab,2) == 0 <span style="color: #a020f0;">.and.</span> LDB &lt; 3) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_9
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">if</span> (<span style="color: #a020f0;">iand</span>(transab,2) == 2 <span style="color: #a020f0;">.and.</span> LDB &lt; n) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_9
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
! <span style="color: #b22222;">check for LDC</span>
<span style="color: #a020f0;">if</span> (LDC &lt; m) <span style="color: #a020f0;">then</span>
info = QMCKL_INVALID_ARG_11
<span style="color: #a020f0;">return</span>
<span style="color: #a020f0;">endif</span>
<span style="color: #a020f0;">select case</span> (transab)
<span style="color: #a020f0;">case</span>(0)
<span style="color: #a020f0;">do</span> j=1,n
<span style="color: #a020f0;">do</span> i=1,m
x = A(1,i) - B(1,j)
y = A(2,i) - B(2,j)
z = A(3,i) - B(3,j)
dist = dsqrt(x*x + y*y + z*z)
dist_inv = 1.0d0/dist
rij = (1.0d0 - dexp(-rescale_factor_kappa * dist)) * rescale_factor_kappa_inv
C(1,i,j) = x * dist_inv * ( 1.0d0 - rescale_factor_kappa_inv * rij)
C(2,i,j) = y * dist_inv * ( 1.0d0 - rescale_factor_kappa_inv * rij)
C(3,i,j) = z * dist_inv * ( 1.0d0 - rescale_factor_kappa_inv * rij)
C(4,i,j) = (2.0d0 * dist_inv - rescale_factor_kappa_inv) * ( 1.0d0 - rescale_factor_kappa_inv * rij)
<span style="color: #a020f0;">end do</span>
<span style="color: #a020f0;">end do</span>
<span style="color: #a020f0;">case</span>(1)
<span style="color: #a020f0;">do</span> j=1,n
<span style="color: #a020f0;">do</span> i=1,m
x = A(i,1) - B(1,j)
y = A(i,2) - B(2,j)
z = A(i,3) - B(3,j)
dist = dsqrt(x*x + y*y + z*z)
dist_inv = 1.0d0/dist
rij = (1.0d0 - dexp(-rescale_factor_kappa * dist)) * rescale_factor_kappa_inv
C(1,i,j) = x * dist_inv * ( 1.0d0 - rescale_factor_kappa_inv * rij)
C(2,i,j) = y * dist_inv * ( 1.0d0 - rescale_factor_kappa_inv * rij)
C(3,i,j) = z * dist_inv * ( 1.0d0 - rescale_factor_kappa_inv * rij)
C(4,i,j) = (2.0d0 * dist_inv - rescale_factor_kappa_inv) * ( 1.0d0 - rescale_factor_kappa_inv * rij)
<span style="color: #a020f0;">end do</span>
<span style="color: #a020f0;">end do</span>
<span style="color: #a020f0;">case</span>(2)
<span style="color: #a020f0;">do</span> j=1,n
<span style="color: #a020f0;">do</span> i=1,m
x = A(1,i) - B(j,1)
y = A(2,i) - B(j,2)
z = A(3,i) - B(j,3)
dist = dsqrt(x*x + y*y + z*z)
dist_inv = 1.0d0/dist
rij = (1.0d0 - dexp(-rescale_factor_kappa * dist)) * rescale_factor_kappa_inv
C(1,i,j) = x * dist_inv * ( 1.0d0 - rescale_factor_kappa_inv * rij)
C(2,i,j) = y * dist_inv * ( 1.0d0 - rescale_factor_kappa_inv * rij)
C(3,i,j) = z * dist_inv * ( 1.0d0 - rescale_factor_kappa_inv * rij)
C(4,i,j) = (2.0d0 * dist_inv - rescale_factor_kappa_inv) * ( 1.0d0 - rescale_factor_kappa_inv * rij)
<span style="color: #a020f0;">end do</span>
<span style="color: #a020f0;">end do</span>
<span style="color: #a020f0;">case</span>(3)
<span style="color: #a020f0;">do</span> j=1,n
<span style="color: #a020f0;">do</span> i=1,m
x = A(i,1) - B(j,1)
y = A(i,2) - B(j,2)
z = A(i,3) - B(j,3)
dist = dsqrt(x*x + y*y + z*z)
dist_inv = 1.0d0/dist
rij = (1.0d0 - dexp(-rescale_factor_kappa * dist)) * rescale_factor_kappa_inv
C(1,i,j) = x * dist_inv * ( 1.0d0 - rescale_factor_kappa_inv * rij)
C(2,i,j) = y * dist_inv * ( 1.0d0 - rescale_factor_kappa_inv * rij)
C(3,i,j) = z * dist_inv * ( 1.0d0 - rescale_factor_kappa_inv * rij)
C(4,i,j) = (2.0d0 * dist_inv - rescale_factor_kappa_inv) * ( 1.0d0 - rescale_factor_kappa_inv * rij)
<span style="color: #a020f0;">end do</span>
<span style="color: #a020f0;">end do</span>
<span style="color: #a020f0;">end select</span>
<span style="color: #a020f0;">end function</span> <span style="color: #0000ff;">qmckl_distance_rescaled_deriv_e_f</span>
</pre>
</div>
<p>
This function is more efficient when <code>A</code> and <code>B</code> are transposed.
</p>
</div>
</div>
</div>
</div>
<div id="postamble" class="status">
<p class="author">Author: TREX CoE</p>
<p class="date">Created: 2022-07-27 Wed 17:32</p>
<p class="validation"><a href="http://validator.w3.org/check?uri=referer">Validate</a></p>
</div>
</body>
</html>