2021-01-13 18:02:56 +01:00
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2021-01-26 00:23:42 +01:00
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2021-01-13 18:02:56 +01:00
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<title>Quantum Monte Carlo</title>
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<body>
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<div id="content">
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<h1 class="title">Quantum Monte Carlo</h1>
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<div id="table-of-contents">
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<h2>Table of Contents</h2>
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<div id="text-table-of-contents">
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<ul>
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2021-01-26 00:23:42 +01:00
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<li><a href="#orga35005a">1. Introduction</a></li>
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<li><a href="#org99b226a">2. Numerical evaluation of the energy</a>
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<ul>
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<li><a href="#orgb54c6e8">2.1. Local energy</a>
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<ul>
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<li><a href="#orgd1fb793">2.1.1. Exercise 1</a></li>
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<li><a href="#org3860cee">2.1.2. Exercise 2</a>
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<ul>
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<li><a href="#orgc1f4406">2.1.2.1. Python</a></li>
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<li><a href="#orgec28d8a">2.1.2.2. Python</a></li>
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<li><a href="#org7eaea85">2.1.2.3. Fortran</a></li>
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<li><a href="#orgc042d6f">2.1.2.4. Fortran</a></li>
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</ul>
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</li>
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<li><a href="#orga7e8e23">2.1.3. Exercise 3</a>
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<ul>
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<li><a href="#orgc8636eb">2.1.3.1. Python</a></li>
|
|
|
|
|
<li><a href="#org4aa281b">2.1.3.2. Python</a></li>
|
|
|
|
|
<li><a href="#org35818d2">2.1.3.3. Fortran</a></li>
|
|
|
|
|
<li><a href="#org6f79896">2.1.3.4. Fortran</a></li>
|
2021-01-21 23:25:25 +01:00
|
|
|
</ul>
|
|
|
|
|
</li>
|
2021-01-26 00:23:42 +01:00
|
|
|
<li><a href="#org7169dad">2.1.4. Exercise 4</a>
|
2021-01-21 23:25:25 +01:00
|
|
|
<ul>
|
2021-01-26 00:23:42 +01:00
|
|
|
<li><a href="#org49311f6">2.1.4.1. Python</a></li>
|
|
|
|
|
<li><a href="#org64701c8">2.1.4.2. Python</a></li>
|
|
|
|
|
<li><a href="#orgcf1f8bb">2.1.4.3. Fortran</a></li>
|
|
|
|
|
<li><a href="#orga709c70">2.1.4.4. Fortran</a></li>
|
2021-01-13 18:02:56 +01:00
|
|
|
</ul>
|
|
|
|
|
</li>
|
2021-01-26 00:23:42 +01:00
|
|
|
<li><a href="#orgabff35a">2.1.5. Exercise 5</a>
|
2021-01-13 18:02:56 +01:00
|
|
|
<ul>
|
2021-01-26 00:23:42 +01:00
|
|
|
<li><a href="#org7d1aba4">2.1.5.1. Python</a></li>
|
|
|
|
|
<li><a href="#orgb2b4bad">2.1.5.2. Python</a></li>
|
|
|
|
|
<li><a href="#org6e7a546">2.1.5.3. Fortran</a></li>
|
|
|
|
|
<li><a href="#org53213b5">2.1.5.4. Fortran</a></li>
|
2021-01-21 23:25:25 +01:00
|
|
|
</ul>
|
|
|
|
|
</li>
|
|
|
|
|
</ul>
|
|
|
|
|
</li>
|
2021-01-26 00:23:42 +01:00
|
|
|
<li><a href="#orgbeab5ec">2.2. Plot of the local energy along the \(x\) axis</a>
|
2021-01-21 23:25:25 +01:00
|
|
|
<ul>
|
2021-01-26 00:23:42 +01:00
|
|
|
<li><a href="#org3510925">2.2.1. Exercise</a>
|
2021-01-21 23:25:25 +01:00
|
|
|
<ul>
|
2021-01-26 00:23:42 +01:00
|
|
|
<li><a href="#orge574bc5">2.2.1.1. Python</a></li>
|
|
|
|
|
<li><a href="#org580bac9">2.2.1.2. Python</a></li>
|
|
|
|
|
<li><a href="#org03b17a4">2.2.1.3. Fortran</a></li>
|
|
|
|
|
<li><a href="#org9a6dc16">2.2.1.4. Fortran</a></li>
|
2021-01-21 23:25:25 +01:00
|
|
|
</ul>
|
|
|
|
|
</li>
|
2021-01-13 18:02:56 +01:00
|
|
|
</ul>
|
|
|
|
|
</li>
|
2021-01-26 00:23:42 +01:00
|
|
|
<li><a href="#orgbf0209f">2.3. Numerical estimation of the energy</a>
|
2021-01-13 18:02:56 +01:00
|
|
|
<ul>
|
2021-01-26 00:23:42 +01:00
|
|
|
<li><a href="#org3958454">2.3.1. Exercise</a>
|
2021-01-25 23:54:27 +01:00
|
|
|
<ul>
|
2021-01-26 00:23:42 +01:00
|
|
|
<li><a href="#org30bade1">2.3.1.1. Python</a></li>
|
|
|
|
|
<li><a href="#org77b7b0a">2.3.1.2. Python</a></li>
|
|
|
|
|
<li><a href="#orga93a5dd">2.3.1.3. Fortran</a></li>
|
|
|
|
|
<li><a href="#org6dd2871">2.3.1.4. Fortran</a></li>
|
2021-01-25 23:54:27 +01:00
|
|
|
</ul>
|
|
|
|
|
</li>
|
2021-01-13 18:02:56 +01:00
|
|
|
</ul>
|
|
|
|
|
</li>
|
2021-01-26 00:23:42 +01:00
|
|
|
<li><a href="#orgeedbee0">2.4. Variance of the local energy</a>
|
2021-01-13 18:02:56 +01:00
|
|
|
<ul>
|
2021-01-26 00:23:42 +01:00
|
|
|
<li><a href="#org4acda64">2.4.1. Exercise (optional)</a></li>
|
|
|
|
|
<li><a href="#org6854abf">2.4.2. Exercise</a>
|
2021-01-25 23:54:27 +01:00
|
|
|
<ul>
|
2021-01-26 00:23:42 +01:00
|
|
|
<li><a href="#org0d826af">2.4.2.1. Python</a></li>
|
|
|
|
|
<li><a href="#org576fa85">2.4.2.2. Python</a></li>
|
|
|
|
|
<li><a href="#org307c660">2.4.2.3. Fortran</a></li>
|
|
|
|
|
<li><a href="#org119dad1">2.4.2.4. Fortran</a></li>
|
2021-01-13 18:02:56 +01:00
|
|
|
</ul>
|
|
|
|
|
</li>
|
|
|
|
|
</ul>
|
|
|
|
|
</li>
|
2021-01-25 23:54:27 +01:00
|
|
|
</ul>
|
|
|
|
|
</li>
|
2021-01-26 00:23:42 +01:00
|
|
|
<li><a href="#org0c2fa9b">3. Variational Monte Carlo</a>
|
2021-01-13 18:02:56 +01:00
|
|
|
<ul>
|
2021-01-26 00:23:42 +01:00
|
|
|
<li><a href="#org4e85021">3.1. Computation of the statistical error</a>
|
2021-01-13 18:02:56 +01:00
|
|
|
<ul>
|
2021-01-26 00:23:42 +01:00
|
|
|
<li><a href="#orga3687ff">3.1.1. Exercise</a>
|
|
|
|
|
<ul>
|
|
|
|
|
<li><a href="#org568b394">3.1.1.1. Python</a></li>
|
|
|
|
|
<li><a href="#org3d69b65">3.1.1.2. Python</a></li>
|
|
|
|
|
<li><a href="#org314b0e7">3.1.1.3. Fortran</a></li>
|
|
|
|
|
<li><a href="#org0f8bdcf">3.1.1.4. Fortran</a></li>
|
|
|
|
|
</ul>
|
|
|
|
|
</li>
|
2021-01-13 18:02:56 +01:00
|
|
|
</ul>
|
|
|
|
|
</li>
|
2021-01-26 00:23:42 +01:00
|
|
|
<li><a href="#orgb0930a1">3.2. <span class="todo TODO">TODO</span> Uniform sampling in the box</a>
|
2021-01-13 18:02:56 +01:00
|
|
|
<ul>
|
2021-01-26 00:23:42 +01:00
|
|
|
<li><a href="#org1ecf130">3.2.1. Exercise</a></li>
|
2021-01-13 18:02:56 +01:00
|
|
|
</ul>
|
|
|
|
|
</li>
|
2021-01-26 00:23:42 +01:00
|
|
|
<li><a href="#org5d0adc4">3.3. <span class="todo TODO">TODO</span> Metropolis sampling with \(\Psi^2\)</a>
|
2021-01-13 18:02:56 +01:00
|
|
|
<ul>
|
2021-01-26 00:23:42 +01:00
|
|
|
<li><a href="#orgb3a648e">3.3.1. Exercise</a></li>
|
2021-01-13 18:02:56 +01:00
|
|
|
</ul>
|
|
|
|
|
</li>
|
2021-01-26 00:23:42 +01:00
|
|
|
<li><a href="#orgb5348ef">3.4. <span class="todo TODO">TODO</span> Gaussian random number generator</a></li>
|
|
|
|
|
<li><a href="#org932bae5">3.5. <span class="todo TODO">TODO</span> Generalized Metropolis algorithm</a>
|
2021-01-13 18:02:56 +01:00
|
|
|
<ul>
|
2021-01-26 00:23:42 +01:00
|
|
|
<li><a href="#org460f3fe">3.5.1. Exercise 1</a></li>
|
|
|
|
|
<li><a href="#orgd39a7d7">3.5.2. Exercise 2</a></li>
|
2021-01-13 18:02:56 +01:00
|
|
|
</ul>
|
|
|
|
|
</li>
|
|
|
|
|
</ul>
|
|
|
|
|
</li>
|
2021-01-26 00:23:42 +01:00
|
|
|
<li><a href="#orgaf5996c">4. <span class="todo TODO">TODO</span> Diffusion Monte Carlo</a>
|
2021-01-21 23:25:25 +01:00
|
|
|
<ul>
|
2021-01-26 00:23:42 +01:00
|
|
|
<li><a href="#org12ab3c5">4.1. <span class="todo TODO">TODO</span> Hydrogen atom</a>
|
2021-01-13 18:02:56 +01:00
|
|
|
<ul>
|
2021-01-26 00:23:42 +01:00
|
|
|
<li><a href="#org3b3e8ae">4.1.1. Exercise</a></li>
|
2021-01-21 23:25:25 +01:00
|
|
|
</ul>
|
|
|
|
|
</li>
|
2021-01-26 00:23:42 +01:00
|
|
|
<li><a href="#orgf0f2402">4.2. <span class="todo TODO">TODO</span> Dihydrogen</a></li>
|
2021-01-13 18:02:56 +01:00
|
|
|
</ul>
|
|
|
|
|
</li>
|
2021-01-26 00:23:42 +01:00
|
|
|
<li><a href="#org1c017d7">5. <span class="todo TODO">TODO</span> <code>[0/1]</code> Last things to do</a></li>
|
2021-01-13 18:02:56 +01:00
|
|
|
</ul>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-orga35005a" class="outline-2">
|
|
|
|
|
<h2 id="orga35005a"><span class="section-number-2">1</span> Introduction</h2>
|
2021-01-13 18:02:56 +01:00
|
|
|
<div class="outline-text-2" id="text-1">
|
|
|
|
|
<p>
|
|
|
|
|
We propose different exercises to understand quantum Monte Carlo (QMC)
|
|
|
|
|
methods. In the first section, we propose to compute the energy of a
|
|
|
|
|
hydrogen atom using numerical integration. The goal of this section is
|
|
|
|
|
to introduce the <i>local energy</i>.
|
|
|
|
|
Then we introduce the variational Monte Carlo (VMC) method which
|
|
|
|
|
computes a statistical estimate of the expectation value of the energy
|
|
|
|
|
associated with a given wave function.
|
|
|
|
|
Finally, we introduce the diffusion Monte Carlo (DMC) method which
|
2021-01-25 23:54:27 +01:00
|
|
|
gives the exact energy of the hydrogen atom and of the \(H_2\) molecule.
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
2021-01-25 23:54:27 +01:00
|
|
|
Code examples will be given in Python and Fortran. You can use
|
|
|
|
|
whatever language you prefer to write the program.
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
We consider the stationary solution of the Schrödinger equation, so
|
|
|
|
|
the wave functions considered here are real: for an \(N\) electron
|
|
|
|
|
system where the electrons move in the 3-dimensional space,
|
|
|
|
|
\(\Psi : \mathbb{R}^{3N} \rightarrow \mathbb{R}\). In addition, \(\Psi\)
|
|
|
|
|
is defined everywhere, continuous and infinitely differentiable.
|
|
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
2021-01-25 23:54:27 +01:00
|
|
|
All the quantities are expressed in <i>atomic units</i> (energies,
|
|
|
|
|
coordinates, etc).
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
|
|
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-org99b226a" class="outline-2">
|
|
|
|
|
<h2 id="org99b226a"><span class="section-number-2">2</span> Numerical evaluation of the energy</h2>
|
2021-01-13 18:02:56 +01:00
|
|
|
<div class="outline-text-2" id="text-2">
|
|
|
|
|
<p>
|
|
|
|
|
In this section we consider the Hydrogen atom with the following
|
|
|
|
|
wave function:
|
|
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
\[
|
|
|
|
|
\Psi(\mathbf{r}) = \exp(-a |\mathbf{r}|)
|
|
|
|
|
\]
|
|
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
2021-01-21 23:25:25 +01:00
|
|
|
We will first verify that, for a given value of \(a\), \(\Psi\) is an
|
|
|
|
|
eigenfunction of the Hamiltonian
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
\[
|
|
|
|
|
\hat{H} = \hat{T} + \hat{V} = - \frac{1}{2} \Delta - \frac{1}{|\mathbf{r}|}
|
|
|
|
|
\]
|
|
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
2021-01-21 23:25:25 +01:00
|
|
|
To do that, we will check if the local energy, defined as
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
\[
|
|
|
|
|
E_L(\mathbf{r}) = \frac{\hat{H} \Psi(\mathbf{r})}{\Psi(\mathbf{r})},
|
|
|
|
|
\]
|
|
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
2021-01-21 23:25:25 +01:00
|
|
|
is constant.
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
The probabilistic <i>expected value</i> of an arbitrary function \(f(x)\)
|
|
|
|
|
with respect to a probability density function \(p(x)\) is given by
|
|
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
2021-01-21 23:25:25 +01:00
|
|
|
\[ \langle f \rangle_p = \int_{-\infty}^\infty p(x)\, f(x)\,dx. \]
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
Recall that a probability density function \(p(x)\) is non-negative
|
|
|
|
|
and integrates to one:
|
|
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
2021-01-21 23:25:25 +01:00
|
|
|
\[ \int_{-\infty}^\infty p(x)\,dx = 1. \]
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
The electronic energy of a system is the expectation value of the
|
|
|
|
|
local energy \(E(\mathbf{r})\) with respect to the 3N-dimensional
|
|
|
|
|
electron density given by the square of the wave function:
|
|
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
\begin{eqnarray*}
|
|
|
|
|
E & = & \frac{\langle \Psi| \hat{H} | \Psi\rangle}{\langle \Psi |\Psi \rangle}
|
|
|
|
|
= \frac{\int \Psi(\mathbf{r})\, \hat{H} \Psi(\mathbf{r})\, d\mathbf{r}}{\int \left[\Psi(\mathbf{r}) \right]^2 d\mathbf{r}} \\
|
|
|
|
|
& = & \frac{\int \left[\Psi(\mathbf{r})\right]^2\, \frac{\hat{H} \Psi(\mathbf{r})}{\Psi(\mathbf{r})}\,d\mathbf{r}}{\int \left[\Psi(\mathbf{r}) \right]^2 d\mathbf{r}}
|
|
|
|
|
= \frac{\int \left[\Psi(\mathbf{r})\right]^2\, E_L(\mathbf{r})\,d\mathbf{r}}{\int \left[\Psi(\mathbf{r}) \right]^2 d\mathbf{r}}
|
|
|
|
|
= \langle E_L \rangle_{\Psi^2}
|
|
|
|
|
\end{eqnarray*}
|
|
|
|
|
</div>
|
|
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-orgb54c6e8" class="outline-3">
|
|
|
|
|
<h3 id="orgb54c6e8"><span class="section-number-3">2.1</span> Local energy</h3>
|
2021-01-13 18:02:56 +01:00
|
|
|
<div class="outline-text-3" id="text-2-1">
|
2021-01-21 23:25:25 +01:00
|
|
|
<p>
|
|
|
|
|
Write all the functions of this section in a single file :
|
|
|
|
|
<code>hydrogen.py</code> if you use Python, or <code>hydrogen.f90</code> is you use
|
|
|
|
|
Fortran.
|
|
|
|
|
</p>
|
2021-01-26 00:23:42 +01:00
|
|
|
|
|
|
|
|
<div class="note">
|
|
|
|
|
<ul class="org-ul">
|
|
|
|
|
<li>When computing a square root in \(\mathbb{R}\), <b>always</b> make sure
|
|
|
|
|
that the argument of the square root is non-negative.</li>
|
|
|
|
|
<li>When you divide, <b>always</b> make sure that you will not divide by zero</li>
|
|
|
|
|
</ul>
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
If a <i>floating-point exception</i> can occur, you should make a test
|
|
|
|
|
to catch the error.
|
|
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
</div>
|
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|
|
|
|
|
|
<p>
|
|
|
|
|
#+end<sub>note</sub>
|
|
|
|
|
</p>
|
2021-01-13 18:02:56 +01:00
|
|
|
</div>
|
|
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-orgd1fb793" class="outline-4">
|
|
|
|
|
<h4 id="orgd1fb793"><span class="section-number-4">2.1.1</span> Exercise 1</h4>
|
2021-01-13 18:02:56 +01:00
|
|
|
<div class="outline-text-4" id="text-2-1-1">
|
|
|
|
|
<div class="exercise">
|
|
|
|
|
<p>
|
2021-01-21 23:25:25 +01:00
|
|
|
Find the theoretical value of \(a\) for which \(\Psi\) is an eigenfunction of \(\hat{H}\).
|
|
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-org3860cee" class="outline-4">
|
|
|
|
|
<h4 id="org3860cee"><span class="section-number-4">2.1.2</span> Exercise 2</h4>
|
2021-01-21 23:25:25 +01:00
|
|
|
<div class="outline-text-4" id="text-2-1-2">
|
|
|
|
|
<div class="exercise">
|
|
|
|
|
<p>
|
2021-01-13 18:02:56 +01:00
|
|
|
Write a function which computes the potential at \(\mathbf{r}\).
|
|
|
|
|
The function accepts a 3-dimensional vector <code>r</code> as input arguments
|
|
|
|
|
and returns the potential.
|
|
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
</div>
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
\(\mathbf{r}=\left( \begin{array}{c} x \\ y\\ z\end{array} \right)\), so
|
|
|
|
|
\[
|
|
|
|
|
V(\mathbf{r}) = -\frac{1}{\sqrt{x^2 + y^2 + z^2}}
|
|
|
|
|
\]
|
|
|
|
|
</p>
|
2021-01-21 23:25:25 +01:00
|
|
|
</div>
|
2021-01-13 18:02:56 +01:00
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-orgc1f4406" class="outline-5">
|
|
|
|
|
<h5 id="orgc1f4406"><span class="section-number-5">2.1.2.1</span> Python</h5>
|
2021-01-21 23:25:25 +01:00
|
|
|
<div class="outline-text-5" id="text-2-1-2-1">
|
|
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-python"><span style="color: #a020f0;">import</span> numpy <span style="color: #a020f0;">as</span> np
|
|
|
|
|
|
|
|
|
|
<span style="color: #a020f0;">def</span> <span style="color: #0000ff;">potential</span>(r):
|
|
|
|
|
# <span style="color: #b22222;">TODO</span>
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-orgec28d8a" class="outline-5">
|
|
|
|
|
<h5 id="orgec28d8a"><span class="section-number-5">2.1.2.2</span> Python   <span class="tag"><span class="solution">solution</span></span></h5>
|
2021-01-21 23:25:25 +01:00
|
|
|
<div class="outline-text-5" id="text-2-1-2-2">
|
2021-01-13 18:02:56 +01:00
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-python"><span style="color: #a020f0;">import</span> numpy <span style="color: #a020f0;">as</span> np
|
|
|
|
|
|
|
|
|
|
<span style="color: #a020f0;">def</span> <span style="color: #0000ff;">potential</span>(r):
|
2021-01-26 00:23:42 +01:00
|
|
|
<span style="color: #a0522d;">distance</span> = np.sqrt(np.dot(r,r))
|
|
|
|
|
<span style="color: #a020f0;">assert</span> (distance > 0)
|
|
|
|
|
<span style="color: #a020f0;">return</span> -1. / distance
|
2021-01-13 18:02:56 +01:00
|
|
|
</pre>
|
|
|
|
|
</div>
|
2021-01-21 23:25:25 +01:00
|
|
|
</div>
|
|
|
|
|
</div>
|
2021-01-13 18:02:56 +01:00
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-org7eaea85" class="outline-5">
|
|
|
|
|
<h5 id="org7eaea85"><span class="section-number-5">2.1.2.3</span> Fortran</h5>
|
2021-01-21 23:25:25 +01:00
|
|
|
<div class="outline-text-5" id="text-2-1-2-3">
|
|
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-f90"><span style="color: #228b22;">double precision </span><span style="color: #a020f0;">function</span><span style="color: #a0522d;"> </span><span style="color: #0000ff;">potential</span><span style="color: #000000; background-color: #ffffff;">(r)</span>
|
|
|
|
|
<span style="color: #a020f0;">implicit</span> <span style="color: #228b22;">none</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> r(3)</span>
|
|
|
|
|
! <span style="color: #b22222;">TODO</span>
|
|
|
|
|
<span style="color: #a020f0;">end function</span> <span style="color: #0000ff;">potential</span>
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
2021-01-13 18:02:56 +01:00
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-orgc042d6f" class="outline-5">
|
|
|
|
|
<h5 id="orgc042d6f"><span class="section-number-5">2.1.2.4</span> Fortran   <span class="tag"><span class="solution">solution</span></span></h5>
|
2021-01-21 23:25:25 +01:00
|
|
|
<div class="outline-text-5" id="text-2-1-2-4">
|
2021-01-13 18:02:56 +01:00
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-f90"><span style="color: #228b22;">double precision </span><span style="color: #a020f0;">function</span><span style="color: #a0522d;"> </span><span style="color: #0000ff;">potential</span><span style="color: #000000; background-color: #ffffff;">(r)</span>
|
|
|
|
|
<span style="color: #a020f0;">implicit</span> <span style="color: #228b22;">none</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> r(3)</span>
|
2021-01-26 00:23:42 +01:00
|
|
|
<span style="color: #228b22;">double precision</span> ::<span style="color: #a0522d;"> distance</span>
|
|
|
|
|
distance = dsqrt( r(1)*r(1) + r(2)*r(2) + r(3)*r(3) )
|
|
|
|
|
<span style="color: #a020f0;">if</span> (distance > 0.d0) <span style="color: #a020f0;">then</span>
|
|
|
|
|
potential = -1.d0 / dsqrt( r(1)*r(1) + r(2)*r(2) + r(3)*r(3) )
|
|
|
|
|
<span style="color: #a020f0;">else</span>
|
|
|
|
|
<span style="color: #a020f0;">stop</span> <span style="color: #8b2252;">'potential at r=0.d0 diverges'</span>
|
|
|
|
|
<span style="color: #a020f0;">end if</span>
|
2021-01-13 18:02:56 +01:00
|
|
|
<span style="color: #a020f0;">end function</span> <span style="color: #0000ff;">potential</span>
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
2021-01-21 23:25:25 +01:00
|
|
|
</div>
|
2021-01-13 18:02:56 +01:00
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-orga7e8e23" class="outline-4">
|
|
|
|
|
<h4 id="orga7e8e23"><span class="section-number-4">2.1.3</span> Exercise 3</h4>
|
2021-01-21 23:25:25 +01:00
|
|
|
<div class="outline-text-4" id="text-2-1-3">
|
2021-01-13 18:02:56 +01:00
|
|
|
<div class="exercise">
|
|
|
|
|
<p>
|
|
|
|
|
Write a function which computes the wave function at \(\mathbf{r}\).
|
|
|
|
|
The function accepts a scalar <code>a</code> and a 3-dimensional vector <code>r</code> as
|
|
|
|
|
input arguments, and returns a scalar.
|
|
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
</div>
|
2021-01-21 23:25:25 +01:00
|
|
|
</div>
|
2021-01-13 18:02:56 +01:00
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-orgc8636eb" class="outline-5">
|
|
|
|
|
<h5 id="orgc8636eb"><span class="section-number-5">2.1.3.1</span> Python</h5>
|
2021-01-21 23:25:25 +01:00
|
|
|
<div class="outline-text-5" id="text-2-1-3-1">
|
|
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-python"><span style="color: #a020f0;">def</span> <span style="color: #0000ff;">psi</span>(a, r):
|
|
|
|
|
# <span style="color: #b22222;">TODO</span>
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-org4aa281b" class="outline-5">
|
|
|
|
|
<h5 id="org4aa281b"><span class="section-number-5">2.1.3.2</span> Python   <span class="tag"><span class="solution">solution</span></span></h5>
|
2021-01-21 23:25:25 +01:00
|
|
|
<div class="outline-text-5" id="text-2-1-3-2">
|
2021-01-13 18:02:56 +01:00
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-python"><span style="color: #a020f0;">def</span> <span style="color: #0000ff;">psi</span>(a, r):
|
|
|
|
|
<span style="color: #a020f0;">return</span> np.exp(-a*np.sqrt(np.dot(r,r)))
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
2021-01-21 23:25:25 +01:00
|
|
|
</div>
|
|
|
|
|
</div>
|
2021-01-13 18:02:56 +01:00
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-org35818d2" class="outline-5">
|
|
|
|
|
<h5 id="org35818d2"><span class="section-number-5">2.1.3.3</span> Fortran</h5>
|
2021-01-21 23:25:25 +01:00
|
|
|
<div class="outline-text-5" id="text-2-1-3-3">
|
|
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-f90"><span style="color: #228b22;">double precision </span><span style="color: #a020f0;">function</span><span style="color: #a0522d;"> </span><span style="color: #0000ff;">psi</span><span style="color: #000000; background-color: #ffffff;">(a, r)</span>
|
|
|
|
|
<span style="color: #a020f0;">implicit</span> <span style="color: #228b22;">none</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> a, r(3)</span>
|
|
|
|
|
! <span style="color: #b22222;">TODO</span>
|
|
|
|
|
<span style="color: #a020f0;">end function</span> <span style="color: #0000ff;">psi</span>
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-org6f79896" class="outline-5">
|
|
|
|
|
<h5 id="org6f79896"><span class="section-number-5">2.1.3.4</span> Fortran   <span class="tag"><span class="solution">solution</span></span></h5>
|
2021-01-21 23:25:25 +01:00
|
|
|
<div class="outline-text-5" id="text-2-1-3-4">
|
2021-01-13 18:02:56 +01:00
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-f90"><span style="color: #228b22;">double precision </span><span style="color: #a020f0;">function</span><span style="color: #a0522d;"> </span><span style="color: #0000ff;">psi</span><span style="color: #000000; background-color: #ffffff;">(a, r)</span>
|
|
|
|
|
<span style="color: #a020f0;">implicit</span> <span style="color: #228b22;">none</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> a, r(3)</span>
|
|
|
|
|
psi = dexp(-a * dsqrt( r(1)*r(1) + r(2)*r(2) + r(3)*r(3) ))
|
|
|
|
|
<span style="color: #a020f0;">end function</span> <span style="color: #0000ff;">psi</span>
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
2021-01-21 23:25:25 +01:00
|
|
|
</div>
|
2021-01-13 18:02:56 +01:00
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-org7169dad" class="outline-4">
|
|
|
|
|
<h4 id="org7169dad"><span class="section-number-4">2.1.4</span> Exercise 4</h4>
|
2021-01-21 23:25:25 +01:00
|
|
|
<div class="outline-text-4" id="text-2-1-4">
|
2021-01-13 18:02:56 +01:00
|
|
|
<div class="exercise">
|
|
|
|
|
<p>
|
|
|
|
|
Write a function which computes the local kinetic energy at \(\mathbf{r}\).
|
|
|
|
|
The function accepts <code>a</code> and <code>r</code> as input arguments and returns the
|
|
|
|
|
local kinetic energy.
|
|
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
</div>
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
The local kinetic energy is defined as \[-\frac{1}{2}\frac{\Delta \Psi}{\Psi}.\]
|
|
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
We differentiate \(\Psi\) with respect to \(x\):
|
|
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
\[\Psi(\mathbf{r}) = \exp(-a\,|\mathbf{r}|) \]
|
|
|
|
|
\[\frac{\partial \Psi}{\partial x}
|
|
|
|
|
= \frac{\partial \Psi}{\partial |\mathbf{r}|} \frac{\partial |\mathbf{r}|}{\partial x}
|
|
|
|
|
= - \frac{a\,x}{|\mathbf{r}|} \Psi(\mathbf{r}) \]
|
|
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
and we differentiate a second time:
|
|
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
\[
|
|
|
|
|
\frac{\partial^2 \Psi}{\partial x^2} =
|
|
|
|
|
\left( \frac{a^2\,x^2}{|\mathbf{r}|^2} -
|
|
|
|
|
\frac{a(y^2+z^2)}{|\mathbf{r}|^{3}} \right) \Psi(\mathbf{r}).
|
|
|
|
|
\]
|
|
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
The Laplacian operator \(\Delta = \frac{\partial^2}{\partial x^2} +
|
|
|
|
|
\frac{\partial^2}{\partial y^2} + \frac{\partial^2}{\partial z^2}\)
|
|
|
|
|
applied to the wave function gives:
|
|
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
\[
|
|
|
|
|
\Delta \Psi (\mathbf{r}) = \left(a^2 - \frac{2a}{\mathbf{|r|}} \right) \Psi(\mathbf{r})
|
|
|
|
|
\]
|
|
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
So the local kinetic energy is
|
|
|
|
|
\[
|
|
|
|
|
-\frac{1}{2} \frac{\Delta \Psi}{\Psi} (\mathbf{r}) = -\frac{1}{2}\left(a^2 - \frac{2a}{\mathbf{|r|}} \right)
|
|
|
|
|
\]
|
|
|
|
|
</p>
|
2021-01-21 23:25:25 +01:00
|
|
|
</div>
|
2021-01-13 18:02:56 +01:00
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-org49311f6" class="outline-5">
|
|
|
|
|
<h5 id="org49311f6"><span class="section-number-5">2.1.4.1</span> Python</h5>
|
2021-01-21 23:25:25 +01:00
|
|
|
<div class="outline-text-5" id="text-2-1-4-1">
|
|
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-python"><span style="color: #a020f0;">def</span> <span style="color: #0000ff;">kinetic</span>(a,r):
|
|
|
|
|
# <span style="color: #b22222;">TODO</span>
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-org64701c8" class="outline-5">
|
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|
|
|
<h5 id="org64701c8"><span class="section-number-5">2.1.4.2</span> Python   <span class="tag"><span class="solution">solution</span></span></h5>
|
2021-01-21 23:25:25 +01:00
|
|
|
<div class="outline-text-5" id="text-2-1-4-2">
|
2021-01-13 18:02:56 +01:00
|
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|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-python"><span style="color: #a020f0;">def</span> <span style="color: #0000ff;">kinetic</span>(a,r):
|
2021-01-26 00:23:42 +01:00
|
|
|
<span style="color: #a0522d;">distance</span> = np.sqrt(np.dot(r,r))
|
|
|
|
|
<span style="color: #a020f0;">assert</span> (distance > 0.)
|
|
|
|
|
<span style="color: #a020f0;">return</span> -0.5 * (a**2 - (2.*a)/distance)
|
2021-01-13 18:02:56 +01:00
|
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|
</pre>
|
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|
</div>
|
2021-01-21 23:25:25 +01:00
|
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</div>
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</div>
|
2021-01-13 18:02:56 +01:00
|
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|
2021-01-26 00:23:42 +01:00
|
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|
<div id="outline-container-orgcf1f8bb" class="outline-5">
|
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|
<h5 id="orgcf1f8bb"><span class="section-number-5">2.1.4.3</span> Fortran</h5>
|
2021-01-21 23:25:25 +01:00
|
|
|
<div class="outline-text-5" id="text-2-1-4-3">
|
|
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-f90"><span style="color: #228b22;">double precision </span><span style="color: #a020f0;">function</span><span style="color: #a0522d;"> </span><span style="color: #0000ff;">kinetic</span><span style="color: #000000; background-color: #ffffff;">(a,r)</span>
|
|
|
|
|
<span style="color: #a020f0;">implicit</span> <span style="color: #228b22;">none</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> a, r(3)</span>
|
|
|
|
|
! <span style="color: #b22222;">TODO</span>
|
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|
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|
<span style="color: #a020f0;">end function</span> <span style="color: #0000ff;">kinetic</span>
|
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|
</pre>
|
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|
</div>
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</div>
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</div>
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|
2021-01-26 00:23:42 +01:00
|
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<div id="outline-container-orga709c70" class="outline-5">
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|
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<h5 id="orga709c70"><span class="section-number-5">2.1.4.4</span> Fortran   <span class="tag"><span class="solution">solution</span></span></h5>
|
2021-01-21 23:25:25 +01:00
|
|
|
<div class="outline-text-5" id="text-2-1-4-4">
|
2021-01-13 18:02:56 +01:00
|
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|
<div class="org-src-container">
|
|
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|
|
<pre class="src src-f90"><span style="color: #228b22;">double precision </span><span style="color: #a020f0;">function</span><span style="color: #a0522d;"> </span><span style="color: #0000ff;">kinetic</span><span style="color: #000000; background-color: #ffffff;">(a,r)</span>
|
|
|
|
|
<span style="color: #a020f0;">implicit</span> <span style="color: #228b22;">none</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> a, r(3)</span>
|
2021-01-26 00:23:42 +01:00
|
|
|
<span style="color: #228b22;">double precision</span> ::<span style="color: #a0522d;"> distance</span>
|
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|
|
distance = dsqrt( r(1)*r(1) + r(2)*r(2) + r(3)*r(3) )
|
|
|
|
|
<span style="color: #a020f0;">if</span> (distance > 0.d0) <span style="color: #a020f0;">then</span>
|
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|
|
|
kinetic = -0.5d0 * (a*a - (2.d0*a) / distance)
|
|
|
|
|
<span style="color: #a020f0;">else</span>
|
|
|
|
|
<span style="color: #a020f0;">stop</span> <span style="color: #8b2252;">'kinetic energy diverges at r=0'</span>
|
|
|
|
|
<span style="color: #a020f0;">end if</span>
|
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|
|
|
<span style="color: #a020f0;">end function</span> <span style="color: #0000ff;">kinetic</span>
|
|
|
|
|
</pre>
|
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|
</div>
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</div>
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|
</div>
|
2021-01-21 23:25:25 +01:00
|
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|
</div>
|
2021-01-13 18:02:56 +01:00
|
|
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|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-orgabff35a" class="outline-4">
|
|
|
|
|
<h4 id="orgabff35a"><span class="section-number-4">2.1.5</span> Exercise 5</h4>
|
2021-01-21 23:25:25 +01:00
|
|
|
<div class="outline-text-4" id="text-2-1-5">
|
2021-01-13 18:02:56 +01:00
|
|
|
<div class="exercise">
|
|
|
|
|
<p>
|
2021-01-21 23:25:25 +01:00
|
|
|
Write a function which computes the local energy at \(\mathbf{r}\),
|
|
|
|
|
using the previously defined functions.
|
|
|
|
|
The function accepts <code>a</code> and <code>r</code> as input arguments and returns the
|
|
|
|
|
local kinetic energy.
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
</div>
|
|
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|
|
|
|
|
<p>
|
|
|
|
|
\[
|
|
|
|
|
E_L(\mathbf{r}) = -\frac{1}{2} \frac{\Delta \Psi}{\Psi} (\mathbf{r}) + V(\mathbf{r})
|
|
|
|
|
\]
|
|
|
|
|
</p>
|
2021-01-21 23:25:25 +01:00
|
|
|
</div>
|
2021-01-13 18:02:56 +01:00
|
|
|
|
|
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-org7d1aba4" class="outline-5">
|
|
|
|
|
<h5 id="org7d1aba4"><span class="section-number-5">2.1.5.1</span> Python</h5>
|
2021-01-21 23:25:25 +01:00
|
|
|
<div class="outline-text-5" id="text-2-1-5-1">
|
|
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-python"><span style="color: #a020f0;">def</span> <span style="color: #0000ff;">e_loc</span>(a,r):
|
|
|
|
|
#<span style="color: #b22222;">TODO</span>
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-orgb2b4bad" class="outline-5">
|
|
|
|
|
<h5 id="orgb2b4bad"><span class="section-number-5">2.1.5.2</span> Python   <span class="tag"><span class="solution">solution</span></span></h5>
|
2021-01-21 23:25:25 +01:00
|
|
|
<div class="outline-text-5" id="text-2-1-5-2">
|
2021-01-13 18:02:56 +01:00
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-python"><span style="color: #a020f0;">def</span> <span style="color: #0000ff;">e_loc</span>(a,r):
|
|
|
|
|
<span style="color: #a020f0;">return</span> kinetic(a,r) + potential(r)
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
2021-01-21 23:25:25 +01:00
|
|
|
</div>
|
|
|
|
|
</div>
|
2021-01-13 18:02:56 +01:00
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-org6e7a546" class="outline-5">
|
|
|
|
|
<h5 id="org6e7a546"><span class="section-number-5">2.1.5.3</span> Fortran</h5>
|
2021-01-21 23:25:25 +01:00
|
|
|
<div class="outline-text-5" id="text-2-1-5-3">
|
|
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-f90"><span style="color: #228b22;">double precision </span><span style="color: #a020f0;">function</span><span style="color: #a0522d;"> </span><span style="color: #0000ff;">e_loc</span><span style="color: #000000; background-color: #ffffff;">(a,r)</span>
|
|
|
|
|
<span style="color: #a020f0;">implicit</span> <span style="color: #228b22;">none</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> a, r(3)</span>
|
|
|
|
|
! <span style="color: #b22222;">TODO</span>
|
|
|
|
|
<span style="color: #a020f0;">end function</span> <span style="color: #0000ff;">e_loc</span>
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-org53213b5" class="outline-5">
|
|
|
|
|
<h5 id="org53213b5"><span class="section-number-5">2.1.5.4</span> Fortran   <span class="tag"><span class="solution">solution</span></span></h5>
|
2021-01-21 23:25:25 +01:00
|
|
|
<div class="outline-text-5" id="text-2-1-5-4">
|
2021-01-13 18:02:56 +01:00
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-f90"><span style="color: #228b22;">double precision </span><span style="color: #a020f0;">function</span><span style="color: #a0522d;"> </span><span style="color: #0000ff;">e_loc</span><span style="color: #000000; background-color: #ffffff;">(a,r)</span>
|
|
|
|
|
<span style="color: #a020f0;">implicit</span> <span style="color: #228b22;">none</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> a, r(3)</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">external</span> ::<span style="color: #a0522d;"> kinetic, potential</span>
|
|
|
|
|
e_loc = kinetic(a,r) + potential(r)
|
|
|
|
|
<span style="color: #a020f0;">end function</span> <span style="color: #0000ff;">e_loc</span>
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
2021-01-21 23:25:25 +01:00
|
|
|
</div>
|
2021-01-13 18:02:56 +01:00
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-orgbeab5ec" class="outline-3">
|
|
|
|
|
<h3 id="orgbeab5ec"><span class="section-number-3">2.2</span> Plot of the local energy along the \(x\) axis</h3>
|
2021-01-13 18:02:56 +01:00
|
|
|
<div class="outline-text-3" id="text-2-2">
|
2021-01-26 00:23:42 +01:00
|
|
|
<div class="note">
|
|
|
|
|
<p>
|
|
|
|
|
The potential and the kinetic energy both diverge at \(r=0\), so we
|
|
|
|
|
choose a grid which does not contain the origin.
|
|
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
</div>
|
2021-01-13 18:02:56 +01:00
|
|
|
</div>
|
|
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-org3510925" class="outline-4">
|
|
|
|
|
<h4 id="org3510925"><span class="section-number-4">2.2.1</span> Exercise</h4>
|
2021-01-13 18:02:56 +01:00
|
|
|
<div class="outline-text-4" id="text-2-2-1">
|
|
|
|
|
<div class="exercise">
|
|
|
|
|
<p>
|
|
|
|
|
For multiple values of \(a\) (0.1, 0.2, 0.5, 1., 1.5, 2.), plot the
|
2021-01-21 23:25:25 +01:00
|
|
|
local energy along the \(x\) axis. In Python, you can use matplotlib
|
|
|
|
|
for example. In Fortran, it is convenient to write in a text file
|
|
|
|
|
the values of \(x\) and \(E_L(\mathbf{r})\) for each point, and use
|
|
|
|
|
Gnuplot to plot the files.
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
|
2021-01-21 23:25:25 +01:00
|
|
|
</div>
|
2021-01-13 18:02:56 +01:00
|
|
|
</div>
|
|
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-orge574bc5" class="outline-5">
|
|
|
|
|
<h5 id="orge574bc5"><span class="section-number-5">2.2.1.1</span> Python</h5>
|
2021-01-21 23:25:25 +01:00
|
|
|
<div class="outline-text-5" id="text-2-2-1-1">
|
2021-01-13 18:02:56 +01:00
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-python"><span style="color: #a020f0;">import</span> numpy <span style="color: #a020f0;">as</span> np
|
|
|
|
|
<span style="color: #a020f0;">import</span> matplotlib.pyplot <span style="color: #a020f0;">as</span> plt
|
|
|
|
|
|
|
|
|
|
<span style="color: #a020f0;">from</span> hydrogen <span style="color: #a020f0;">import</span> e_loc
|
|
|
|
|
|
|
|
|
|
<span style="color: #a0522d;">x</span>=np.linspace(-5,5)
|
2021-01-21 23:25:25 +01:00
|
|
|
plt.figure(figsize=(10,5))
|
2021-01-13 18:02:56 +01:00
|
|
|
|
2021-01-21 23:25:25 +01:00
|
|
|
# <span style="color: #b22222;">TODO</span>
|
|
|
|
|
|
|
|
|
|
plt.tight_layout()
|
|
|
|
|
plt.legend()
|
|
|
|
|
plt.savefig(<span style="color: #8b2252;">"plot_py.png"</span>)
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-org580bac9" class="outline-5">
|
|
|
|
|
<h5 id="org580bac9"><span class="section-number-5">2.2.1.2</span> Python   <span class="tag"><span class="solution">solution</span></span></h5>
|
2021-01-21 23:25:25 +01:00
|
|
|
<div class="outline-text-5" id="text-2-2-1-2">
|
|
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-python"><span style="color: #a020f0;">import</span> numpy <span style="color: #a020f0;">as</span> np
|
|
|
|
|
<span style="color: #a020f0;">import</span> matplotlib.pyplot <span style="color: #a020f0;">as</span> plt
|
|
|
|
|
|
|
|
|
|
<span style="color: #a020f0;">from</span> hydrogen <span style="color: #a020f0;">import</span> e_loc
|
2021-01-13 18:02:56 +01:00
|
|
|
|
2021-01-21 23:25:25 +01:00
|
|
|
<span style="color: #a0522d;">x</span>=np.linspace(-5,5)
|
2021-01-13 18:02:56 +01:00
|
|
|
plt.figure(figsize=(10,5))
|
2021-01-21 23:25:25 +01:00
|
|
|
|
2021-01-13 18:02:56 +01:00
|
|
|
<span style="color: #a020f0;">for</span> a <span style="color: #a020f0;">in</span> [0.1, 0.2, 0.5, 1., 1.5, 2.]:
|
2021-01-21 23:25:25 +01:00
|
|
|
<span style="color: #a0522d;">y</span>=np.array([ e_loc(a, np.array([t,0.,0.]) ) <span style="color: #a020f0;">for</span> t <span style="color: #a020f0;">in</span> x])
|
2021-01-13 18:02:56 +01:00
|
|
|
plt.plot(x,y,label=f<span style="color: #8b2252;">"a={a}"</span>)
|
|
|
|
|
|
|
|
|
|
plt.tight_layout()
|
|
|
|
|
plt.legend()
|
|
|
|
|
plt.savefig(<span style="color: #8b2252;">"plot_py.png"</span>)
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<div class="figure">
|
|
|
|
|
<p><img src="./plot_py.png" alt="plot_py.png" />
|
|
|
|
|
</p>
|
|
|
|
|
</div>
|
2021-01-21 23:25:25 +01:00
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-org03b17a4" class="outline-5">
|
|
|
|
|
<h5 id="org03b17a4"><span class="section-number-5">2.2.1.3</span> Fortran</h5>
|
2021-01-21 23:25:25 +01:00
|
|
|
<div class="outline-text-5" id="text-2-2-1-3">
|
|
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-f90"><span style="color: #a020f0;">program</span> <span style="color: #0000ff;">plot</span>
|
|
|
|
|
<span style="color: #a020f0;">implicit</span> <span style="color: #228b22;">none</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">external</span> ::<span style="color: #a0522d;"> e_loc</span>
|
|
|
|
|
|
|
|
|
|
<span style="color: #228b22;">double precision</span> ::<span style="color: #a0522d;"> x(50), dx</span>
|
|
|
|
|
<span style="color: #228b22;">integer</span> ::<span style="color: #a0522d;"> i, j</span>
|
2021-01-13 18:02:56 +01:00
|
|
|
|
2021-01-21 23:25:25 +01:00
|
|
|
dx = 10.d0/(<span style="color: #a020f0;">size</span>(x)-1)
|
|
|
|
|
<span style="color: #a020f0;">do</span> i=1,<span style="color: #a020f0;">size</span>(x)
|
|
|
|
|
x(i) = -5.d0 + (i-1)*dx
|
|
|
|
|
<span style="color: #a020f0;">end do</span>
|
2021-01-13 18:02:56 +01:00
|
|
|
|
2021-01-21 23:25:25 +01:00
|
|
|
! <span style="color: #b22222;">TODO</span>
|
|
|
|
|
|
|
|
|
|
<span style="color: #a020f0;">end program</span> <span style="color: #0000ff;">plot</span>
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
2021-01-13 18:02:56 +01:00
|
|
|
|
|
|
|
|
<p>
|
2021-01-21 23:25:25 +01:00
|
|
|
To compile and run:
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
2021-01-21 23:25:25 +01:00
|
|
|
|
|
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-sh">gfortran hydrogen.f90 plot_hydrogen.f90 -o plot_hydrogen
|
|
|
|
|
./plot_hydrogen > data
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
|
|
|
|
|
<p>
|
2021-01-25 23:54:27 +01:00
|
|
|
To plot the data using Gnuplot:
|
2021-01-21 23:25:25 +01:00
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-gnuplot">set grid
|
|
|
|
|
set xrange [-5:5]
|
|
|
|
|
set yrange [-2:1]
|
|
|
|
|
plot './data' index 0 using 1:2 with lines title 'a=0.1', \
|
|
|
|
|
'./data' index 1 using 1:2 with lines title 'a=0.2', \
|
|
|
|
|
'./data' index 2 using 1:2 with lines title 'a=0.5', \
|
|
|
|
|
'./data' index 3 using 1:2 with lines title 'a=1.0', \
|
|
|
|
|
'./data' index 4 using 1:2 with lines title 'a=1.5', \
|
|
|
|
|
'./data' index 5 using 1:2 with lines title 'a=2.0'
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-org9a6dc16" class="outline-5">
|
|
|
|
|
<h5 id="org9a6dc16"><span class="section-number-5">2.2.1.4</span> Fortran   <span class="tag"><span class="solution">solution</span></span></h5>
|
2021-01-21 23:25:25 +01:00
|
|
|
<div class="outline-text-5" id="text-2-2-1-4">
|
2021-01-13 18:02:56 +01:00
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-f90"><span style="color: #a020f0;">program</span> <span style="color: #0000ff;">plot</span>
|
|
|
|
|
<span style="color: #a020f0;">implicit</span> <span style="color: #228b22;">none</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">external</span> ::<span style="color: #a0522d;"> e_loc</span>
|
|
|
|
|
|
|
|
|
|
<span style="color: #228b22;">double precision</span> ::<span style="color: #a0522d;"> x(50), energy, dx, r(3), a(6)</span>
|
|
|
|
|
<span style="color: #228b22;">integer</span> ::<span style="color: #a0522d;"> i, j</span>
|
|
|
|
|
|
|
|
|
|
a = (/ 0.1d0, 0.2d0, 0.5d0, 1.d0, 1.5d0, 2.d0 /)
|
|
|
|
|
|
|
|
|
|
dx = 10.d0/(<span style="color: #a020f0;">size</span>(x)-1)
|
|
|
|
|
<span style="color: #a020f0;">do</span> i=1,<span style="color: #a020f0;">size</span>(x)
|
|
|
|
|
x(i) = -5.d0 + (i-1)*dx
|
|
|
|
|
<span style="color: #a020f0;">end do</span>
|
|
|
|
|
|
|
|
|
|
r(:) = 0.d0
|
|
|
|
|
|
|
|
|
|
<span style="color: #a020f0;">do</span> j=1,<span style="color: #a020f0;">size</span>(a)
|
|
|
|
|
<span style="color: #a020f0;">print</span> *, <span style="color: #8b2252;">'# a='</span>, a(j)
|
|
|
|
|
<span style="color: #a020f0;">do</span> i=1,<span style="color: #a020f0;">size</span>(x)
|
|
|
|
|
r(1) = x(i)
|
|
|
|
|
energy = e_loc( a(j), r )
|
|
|
|
|
<span style="color: #a020f0;">print</span> *, x(i), energy
|
|
|
|
|
<span style="color: #a020f0;">end do</span>
|
|
|
|
|
<span style="color: #a020f0;">print</span> *, <span style="color: #8b2252;">''</span>
|
|
|
|
|
<span style="color: #a020f0;">print</span> *, <span style="color: #8b2252;">''</span>
|
|
|
|
|
<span style="color: #a020f0;">end do</span>
|
|
|
|
|
|
|
|
|
|
<span style="color: #a020f0;">end program</span> <span style="color: #0000ff;">plot</span>
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
To compile and run:
|
|
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-sh">gfortran hydrogen.f90 plot_hydrogen.f90 -o plot_hydrogen
|
|
|
|
|
./plot_hydrogen > data
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
|
|
|
|
|
<p>
|
2021-01-25 23:54:27 +01:00
|
|
|
To plot the data using Gnuplot:
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-gnuplot">set grid
|
|
|
|
|
set xrange [-5:5]
|
|
|
|
|
set yrange [-2:1]
|
|
|
|
|
plot './data' index 0 using 1:2 with lines title 'a=0.1', \
|
|
|
|
|
'./data' index 1 using 1:2 with lines title 'a=0.2', \
|
|
|
|
|
'./data' index 2 using 1:2 with lines title 'a=0.5', \
|
|
|
|
|
'./data' index 3 using 1:2 with lines title 'a=1.0', \
|
|
|
|
|
'./data' index 4 using 1:2 with lines title 'a=1.5', \
|
|
|
|
|
'./data' index 5 using 1:2 with lines title 'a=2.0'
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<div class="figure">
|
|
|
|
|
<p><img src="plot.png" alt="plot.png" />
|
|
|
|
|
</p>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
2021-01-21 23:25:25 +01:00
|
|
|
</div>
|
2021-01-13 18:02:56 +01:00
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-orgbf0209f" class="outline-3">
|
|
|
|
|
<h3 id="orgbf0209f"><span class="section-number-3">2.3</span> Numerical estimation of the energy</h3>
|
2021-01-13 18:02:56 +01:00
|
|
|
<div class="outline-text-3" id="text-2-3">
|
|
|
|
|
<p>
|
|
|
|
|
If the space is discretized in small volume elements \(\mathbf{r}_i\)
|
|
|
|
|
of size \(\delta \mathbf{r}\), the expression of \(\langle E_L \rangle_{\Psi^2}\)
|
|
|
|
|
becomes a weighted average of the local energy, where the weights
|
|
|
|
|
are the values of the probability density at \(\mathbf{r}_i\)
|
|
|
|
|
multiplied by the volume element:
|
|
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
\[
|
|
|
|
|
\langle E \rangle_{\Psi^2} \approx \frac{\sum_i w_i E_L(\mathbf{r}_i)}{\sum_i w_i}, \;\;
|
|
|
|
|
w_i = \left[\Psi(\mathbf{r}_i)\right]^2 \delta \mathbf{r}
|
|
|
|
|
\]
|
|
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<div class="note">
|
|
|
|
|
<p>
|
|
|
|
|
The energy is biased because:
|
|
|
|
|
</p>
|
|
|
|
|
<ul class="org-ul">
|
|
|
|
|
<li>The volume elements are not infinitely small (discretization error)</li>
|
|
|
|
|
<li>The energy is evaluated only inside the box (incompleteness of the space)</li>
|
|
|
|
|
</ul>
|
|
|
|
|
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
|
|
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-org3958454" class="outline-4">
|
|
|
|
|
<h4 id="org3958454"><span class="section-number-4">2.3.1</span> Exercise</h4>
|
2021-01-13 18:02:56 +01:00
|
|
|
<div class="outline-text-4" id="text-2-3-1">
|
|
|
|
|
<div class="exercise">
|
|
|
|
|
<p>
|
|
|
|
|
Compute a numerical estimate of the energy in a grid of
|
|
|
|
|
\(50\times50\times50\) points in the range \((-5,-5,-5) \le
|
|
|
|
|
\mathbf{r} \le (5,5,5)\).
|
|
|
|
|
</p>
|
|
|
|
|
|
2021-01-25 23:54:27 +01:00
|
|
|
</div>
|
2021-01-13 18:02:56 +01:00
|
|
|
</div>
|
|
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-org30bade1" class="outline-5">
|
|
|
|
|
<h5 id="org30bade1"><span class="section-number-5">2.3.1.1</span> Python</h5>
|
2021-01-25 23:54:27 +01:00
|
|
|
<div class="outline-text-5" id="text-2-3-1-1">
|
|
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-python"><span style="color: #a020f0;">import</span> numpy <span style="color: #a020f0;">as</span> np
|
|
|
|
|
<span style="color: #a020f0;">from</span> hydrogen <span style="color: #a020f0;">import</span> e_loc, psi
|
|
|
|
|
|
|
|
|
|
<span style="color: #a0522d;">interval</span> = np.linspace(-5,5,num=50)
|
|
|
|
|
<span style="color: #a0522d;">delta</span> = (interval[1]-interval[0])**3
|
|
|
|
|
|
|
|
|
|
<span style="color: #a0522d;">r</span> = np.array([0.,0.,0.])
|
|
|
|
|
|
|
|
|
|
<span style="color: #a020f0;">for</span> a <span style="color: #a020f0;">in</span> [0.1, 0.2, 0.5, 0.9, 1., 1.5, 2.]:
|
|
|
|
|
# <span style="color: #b22222;">TODO</span>
|
|
|
|
|
<span style="color: #a020f0;">print</span>(f<span style="color: #8b2252;">"a = {a} \t E = {E}"</span>)
|
|
|
|
|
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-org77b7b0a" class="outline-5">
|
|
|
|
|
<h5 id="org77b7b0a"><span class="section-number-5">2.3.1.2</span> Python   <span class="tag"><span class="solution">solution</span></span></h5>
|
2021-01-25 23:54:27 +01:00
|
|
|
<div class="outline-text-5" id="text-2-3-1-2">
|
2021-01-13 18:02:56 +01:00
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-python"><span style="color: #a020f0;">import</span> numpy <span style="color: #a020f0;">as</span> np
|
|
|
|
|
<span style="color: #a020f0;">from</span> hydrogen <span style="color: #a020f0;">import</span> e_loc, psi
|
|
|
|
|
|
|
|
|
|
<span style="color: #a0522d;">interval</span> = np.linspace(-5,5,num=50)
|
|
|
|
|
<span style="color: #a0522d;">delta</span> = (interval[1]-interval[0])**3
|
|
|
|
|
|
|
|
|
|
<span style="color: #a0522d;">r</span> = np.array([0.,0.,0.])
|
|
|
|
|
|
|
|
|
|
<span style="color: #a020f0;">for</span> a <span style="color: #a020f0;">in</span> [0.1, 0.2, 0.5, 0.9, 1., 1.5, 2.]:
|
|
|
|
|
<span style="color: #a0522d;">E</span> = 0.
|
|
|
|
|
<span style="color: #a0522d;">norm</span> = 0.
|
2021-01-25 23:54:27 +01:00
|
|
|
<span style="color: #a020f0;">for</span> x <span style="color: #a020f0;">in</span> interval:
|
|
|
|
|
<span style="color: #a0522d;">r</span>[0] = x
|
|
|
|
|
<span style="color: #a020f0;">for</span> y <span style="color: #a020f0;">in</span> interval:
|
|
|
|
|
<span style="color: #a0522d;">r</span>[1] = y
|
|
|
|
|
<span style="color: #a020f0;">for</span> z <span style="color: #a020f0;">in</span> interval:
|
|
|
|
|
<span style="color: #a0522d;">r</span>[2] = z
|
|
|
|
|
<span style="color: #a0522d;">w</span> = psi(a,r)
|
|
|
|
|
<span style="color: #a0522d;">w</span> = w * w * delta
|
|
|
|
|
<span style="color: #a0522d;">E</span> += w * e_loc(a,r)
|
|
|
|
|
<span style="color: #a0522d;">norm</span> += w
|
2021-01-13 18:02:56 +01:00
|
|
|
<span style="color: #a0522d;">E</span> = E / norm
|
|
|
|
|
<span style="color: #a020f0;">print</span>(f<span style="color: #8b2252;">"a = {a} \t E = {E}"</span>)
|
|
|
|
|
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
2021-01-25 23:54:27 +01:00
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-orga93a5dd" class="outline-5">
|
|
|
|
|
<h5 id="orga93a5dd"><span class="section-number-5">2.3.1.3</span> Fortran</h5>
|
2021-01-25 23:54:27 +01:00
|
|
|
<div class="outline-text-5" id="text-2-3-1-3">
|
|
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-f90"><span style="color: #a020f0;">program</span> <span style="color: #0000ff;">energy_hydrogen</span>
|
|
|
|
|
<span style="color: #a020f0;">implicit</span> <span style="color: #228b22;">none</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">external</span> ::<span style="color: #a0522d;"> e_loc, psi</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span> ::<span style="color: #a0522d;"> x(50), w, delta, energy, dx, r(3), a(6), norm</span>
|
|
|
|
|
<span style="color: #228b22;">integer</span> ::<span style="color: #a0522d;"> i, k, l, j</span>
|
|
|
|
|
|
|
|
|
|
a = (/ 0.1d0, 0.2d0, 0.5d0, 1.d0, 1.5d0, 2.d0 /)
|
|
|
|
|
|
|
|
|
|
dx = 10.d0/(<span style="color: #a020f0;">size</span>(x)-1)
|
|
|
|
|
<span style="color: #a020f0;">do</span> i=1,<span style="color: #a020f0;">size</span>(x)
|
|
|
|
|
x(i) = -5.d0 + (i-1)*dx
|
|
|
|
|
<span style="color: #a020f0;">end do</span>
|
|
|
|
|
|
|
|
|
|
<span style="color: #a020f0;">do</span> j=1,<span style="color: #a020f0;">size</span>(a)
|
|
|
|
|
! <span style="color: #b22222;">TODO</span>
|
|
|
|
|
<span style="color: #a020f0;">print</span> *, <span style="color: #8b2252;">'a = '</span>, a(j), <span style="color: #8b2252;">' E = '</span>, energy
|
|
|
|
|
<span style="color: #a020f0;">end do</span>
|
|
|
|
|
|
|
|
|
|
<span style="color: #a020f0;">end program</span> <span style="color: #0000ff;">energy_hydrogen</span>
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
2021-01-13 18:02:56 +01:00
|
|
|
|
|
|
|
|
<p>
|
2021-01-25 23:54:27 +01:00
|
|
|
To compile the Fortran and run it:
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
2021-01-25 23:54:27 +01:00
|
|
|
|
|
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-sh">gfortran hydrogen.f90 energy_hydrogen.f90 -o energy_hydrogen
|
|
|
|
|
./energy_hydrogen
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-org6dd2871" class="outline-5">
|
|
|
|
|
<h5 id="org6dd2871"><span class="section-number-5">2.3.1.4</span> Fortran   <span class="tag"><span class="solution">solution</span></span></h5>
|
2021-01-25 23:54:27 +01:00
|
|
|
<div class="outline-text-5" id="text-2-3-1-4">
|
2021-01-13 18:02:56 +01:00
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-f90"><span style="color: #a020f0;">program</span> <span style="color: #0000ff;">energy_hydrogen</span>
|
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|
|
|
<span style="color: #a020f0;">implicit</span> <span style="color: #228b22;">none</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">external</span> ::<span style="color: #a0522d;"> e_loc, psi</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span> ::<span style="color: #a0522d;"> x(50), w, delta, energy, dx, r(3), a(6), norm</span>
|
|
|
|
|
<span style="color: #228b22;">integer</span> ::<span style="color: #a0522d;"> i, k, l, j</span>
|
|
|
|
|
|
|
|
|
|
a = (/ 0.1d0, 0.2d0, 0.5d0, 1.d0, 1.5d0, 2.d0 /)
|
|
|
|
|
|
|
|
|
|
dx = 10.d0/(<span style="color: #a020f0;">size</span>(x)-1)
|
|
|
|
|
<span style="color: #a020f0;">do</span> i=1,<span style="color: #a020f0;">size</span>(x)
|
|
|
|
|
x(i) = -5.d0 + (i-1)*dx
|
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|
|
|
<span style="color: #a020f0;">end do</span>
|
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|
|
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|
|
delta = dx**3
|
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|
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|
|
r(:) = 0.d0
|
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|
|
|
|
|
|
|
<span style="color: #a020f0;">do</span> j=1,<span style="color: #a020f0;">size</span>(a)
|
|
|
|
|
energy = 0.d0
|
|
|
|
|
norm = 0.d0
|
|
|
|
|
<span style="color: #a020f0;">do</span> i=1,<span style="color: #a020f0;">size</span>(x)
|
|
|
|
|
r(1) = x(i)
|
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|
|
<span style="color: #a020f0;">do</span> k=1,<span style="color: #a020f0;">size</span>(x)
|
|
|
|
|
r(2) = x(k)
|
|
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|
|
<span style="color: #a020f0;">do</span> l=1,<span style="color: #a020f0;">size</span>(x)
|
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|
|
r(3) = x(l)
|
|
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|
|
w = psi(a(j),r)
|
|
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|
|
w = w * w * delta
|
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|
|
|
energy = energy + w * e_loc(a(j), r)
|
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|
|
norm = norm + w
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|
|
<span style="color: #a020f0;">end do</span>
|
|
|
|
|
<span style="color: #a020f0;">end do</span>
|
|
|
|
|
<span style="color: #a020f0;">end do</span>
|
|
|
|
|
energy = energy / norm
|
|
|
|
|
<span style="color: #a020f0;">print</span> *, <span style="color: #8b2252;">'a = '</span>, a(j), <span style="color: #8b2252;">' E = '</span>, energy
|
|
|
|
|
<span style="color: #a020f0;">end do</span>
|
|
|
|
|
|
|
|
|
|
<span style="color: #a020f0;">end program</span> <span style="color: #0000ff;">energy_hydrogen</span>
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
To compile the Fortran and run it:
|
|
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-sh">gfortran hydrogen.f90 energy_hydrogen.f90 -o energy_hydrogen
|
|
|
|
|
./energy_hydrogen
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
|
|
|
|
|
<pre class="example">
|
|
|
|
|
a = 0.10000000000000001 E = -0.24518438948809140
|
|
|
|
|
a = 0.20000000000000001 E = -0.26966057967803236
|
|
|
|
|
a = 0.50000000000000000 E = -0.38563576125173815
|
|
|
|
|
a = 1.0000000000000000 E = -0.50000000000000000
|
|
|
|
|
a = 1.5000000000000000 E = -0.39242967082602065
|
|
|
|
|
a = 2.0000000000000000 E = -8.0869806678448772E-002
|
|
|
|
|
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
2021-01-25 23:54:27 +01:00
|
|
|
</div>
|
2021-01-13 18:02:56 +01:00
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-orgeedbee0" class="outline-3">
|
|
|
|
|
<h3 id="orgeedbee0"><span class="section-number-3">2.4</span> Variance of the local energy</h3>
|
2021-01-13 18:02:56 +01:00
|
|
|
<div class="outline-text-3" id="text-2-4">
|
|
|
|
|
<p>
|
|
|
|
|
The variance of the local energy is a functional of \(\Psi\)
|
|
|
|
|
which measures the magnitude of the fluctuations of the local
|
2021-01-25 23:54:27 +01:00
|
|
|
energy associated with \(\Psi\) around its average:
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
\[
|
|
|
|
|
\sigma^2(E_L) = \frac{\int \left[\Psi(\mathbf{r})\right]^2\, \left[
|
|
|
|
|
E_L(\mathbf{r}) - E \right]^2 \, d\mathbf{r}}{\int \left[\Psi(\mathbf{r}) \right]^2 d\mathbf{r}}
|
|
|
|
|
\]
|
2021-01-19 10:46:37 +01:00
|
|
|
which can be simplified as
|
|
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
2021-01-25 23:54:27 +01:00
|
|
|
\[ \sigma^2(E_L) = \langle E_L^2 \rangle_{\Psi^2} - \langle E_L \rangle_{\Psi^2}^2.\]
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
If the local energy is constant (i.e. \(\Psi\) is an eigenfunction of
|
|
|
|
|
\(\hat{H}\)) the variance is zero, so the variance of the local
|
|
|
|
|
energy can be used as a measure of the quality of a wave function.
|
|
|
|
|
</p>
|
|
|
|
|
</div>
|
|
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-org4acda64" class="outline-4">
|
|
|
|
|
<h4 id="org4acda64"><span class="section-number-4">2.4.1</span> Exercise (optional)</h4>
|
2021-01-13 18:02:56 +01:00
|
|
|
<div class="outline-text-4" id="text-2-4-1">
|
|
|
|
|
<div class="exercise">
|
|
|
|
|
<p>
|
2021-01-19 10:46:37 +01:00
|
|
|
Prove that :
|
2021-01-25 23:54:27 +01:00
|
|
|
\[\left( \langle E - \langle E \rangle_{\Psi^2} \rangle_{\Psi^2} \right)^2 = \langle E^2 \rangle_{\Psi^2} - \langle E \rangle_{\Psi^2}^2 \]
|
2021-01-19 10:46:37 +01:00
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-org6854abf" class="outline-4">
|
|
|
|
|
<h4 id="org6854abf"><span class="section-number-4">2.4.2</span> Exercise</h4>
|
2021-01-19 10:46:37 +01:00
|
|
|
<div class="outline-text-4" id="text-2-4-2">
|
|
|
|
|
<div class="exercise">
|
|
|
|
|
<p>
|
|
|
|
|
Add the calculation of the variance to the previous code, and
|
|
|
|
|
compute a numerical estimate of the variance of the local energy
|
2021-01-13 18:02:56 +01:00
|
|
|
in a grid of \(50\times50\times50\) points in the range
|
|
|
|
|
\((-5,-5,-5)
|
|
|
|
|
\le \mathbf{r} \le (5,5,5)\) for different values of \(a\).
|
|
|
|
|
</p>
|
|
|
|
|
|
2021-01-25 23:54:27 +01:00
|
|
|
</div>
|
2021-01-13 18:02:56 +01:00
|
|
|
</div>
|
|
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-org0d826af" class="outline-5">
|
|
|
|
|
<h5 id="org0d826af"><span class="section-number-5">2.4.2.1</span> Python</h5>
|
2021-01-25 23:54:27 +01:00
|
|
|
<div class="outline-text-5" id="text-2-4-2-1">
|
|
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-python"><span style="color: #a020f0;">import</span> numpy <span style="color: #a020f0;">as</span> np
|
|
|
|
|
<span style="color: #a020f0;">from</span> hydrogen <span style="color: #a020f0;">import</span> e_loc, psi
|
|
|
|
|
|
|
|
|
|
<span style="color: #a0522d;">interval</span> = np.linspace(-5,5,num=50)
|
|
|
|
|
<span style="color: #a0522d;">delta</span> = (interval[1]-interval[0])**3
|
|
|
|
|
|
|
|
|
|
<span style="color: #a0522d;">r</span> = np.array([0.,0.,0.])
|
|
|
|
|
|
|
|
|
|
<span style="color: #a020f0;">for</span> a <span style="color: #a020f0;">in</span> [0.1, 0.2, 0.5, 0.9, 1., 1.5, 2.]:
|
|
|
|
|
# <span style="color: #b22222;">TODO</span>
|
|
|
|
|
<span style="color: #a020f0;">print</span>(f<span style="color: #8b2252;">"a = {a} \t E = {E:10.8f} \t \sigma^2 = {s2:10.8f}"</span>)
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-org576fa85" class="outline-5">
|
|
|
|
|
<h5 id="org576fa85"><span class="section-number-5">2.4.2.2</span> Python   <span class="tag"><span class="solution">solution</span></span></h5>
|
2021-01-25 23:54:27 +01:00
|
|
|
<div class="outline-text-5" id="text-2-4-2-2">
|
2021-01-13 18:02:56 +01:00
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-python"><span style="color: #a020f0;">import</span> numpy <span style="color: #a020f0;">as</span> np
|
|
|
|
|
<span style="color: #a020f0;">from</span> hydrogen <span style="color: #a020f0;">import</span> e_loc, psi
|
|
|
|
|
|
|
|
|
|
<span style="color: #a0522d;">interval</span> = np.linspace(-5,5,num=50)
|
|
|
|
|
<span style="color: #a0522d;">delta</span> = (interval[1]-interval[0])**3
|
|
|
|
|
|
|
|
|
|
<span style="color: #a0522d;">r</span> = np.array([0.,0.,0.])
|
|
|
|
|
|
|
|
|
|
<span style="color: #a020f0;">for</span> a <span style="color: #a020f0;">in</span> [0.1, 0.2, 0.5, 0.9, 1., 1.5, 2.]:
|
|
|
|
|
<span style="color: #a0522d;">E</span> = 0.
|
2021-01-19 10:46:37 +01:00
|
|
|
<span style="color: #a0522d;">E2</span> = 0.
|
2021-01-13 18:02:56 +01:00
|
|
|
<span style="color: #a0522d;">norm</span> = 0.
|
|
|
|
|
<span style="color: #a020f0;">for</span> x <span style="color: #a020f0;">in</span> interval:
|
|
|
|
|
<span style="color: #a0522d;">r</span>[0] = x
|
|
|
|
|
<span style="color: #a020f0;">for</span> y <span style="color: #a020f0;">in</span> interval:
|
|
|
|
|
<span style="color: #a0522d;">r</span>[1] = y
|
|
|
|
|
<span style="color: #a020f0;">for</span> z <span style="color: #a020f0;">in</span> interval:
|
|
|
|
|
<span style="color: #a0522d;">r</span>[2] = z
|
|
|
|
|
<span style="color: #a0522d;">w</span> = psi(a, r)
|
|
|
|
|
<span style="color: #a0522d;">w</span> = w * w * delta
|
|
|
|
|
<span style="color: #a0522d;">El</span> = e_loc(a, r)
|
|
|
|
|
<span style="color: #a0522d;">E</span> += w * El
|
2021-01-19 10:46:37 +01:00
|
|
|
<span style="color: #a0522d;">E2</span> += w * El*El
|
2021-01-13 18:02:56 +01:00
|
|
|
<span style="color: #a0522d;">norm</span> += w
|
|
|
|
|
<span style="color: #a0522d;">E</span> = E / norm
|
2021-01-19 10:46:37 +01:00
|
|
|
<span style="color: #a0522d;">E2</span> = E2 / norm
|
|
|
|
|
<span style="color: #a0522d;">s2</span> = E2 - E*E
|
2021-01-13 18:02:56 +01:00
|
|
|
<span style="color: #a020f0;">print</span>(f<span style="color: #8b2252;">"a = {a} \t E = {E:10.8f} \t \sigma^2 = {s2:10.8f}"</span>)
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
2021-01-25 23:54:27 +01:00
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-org307c660" class="outline-5">
|
|
|
|
|
<h5 id="org307c660"><span class="section-number-5">2.4.2.3</span> Fortran</h5>
|
2021-01-25 23:54:27 +01:00
|
|
|
<div class="outline-text-5" id="text-2-4-2-3">
|
|
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-f90"><span style="color: #a020f0;">program</span> <span style="color: #0000ff;">variance_hydrogen</span>
|
|
|
|
|
<span style="color: #a020f0;">implicit</span> <span style="color: #228b22;">none</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">external</span> ::<span style="color: #a0522d;"> e_loc, psi</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span> ::<span style="color: #a0522d;"> x(50), w, delta, energy, dx, r(3), a(6), norm, s2</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span> ::<span style="color: #a0522d;"> e, energy2</span>
|
|
|
|
|
<span style="color: #228b22;">integer</span> ::<span style="color: #a0522d;"> i, k, l, j</span>
|
|
|
|
|
|
|
|
|
|
a = (/ 0.1d0, 0.2d0, 0.5d0, 1.d0, 1.5d0, 2.d0 /)
|
|
|
|
|
|
|
|
|
|
dx = 10.d0/(<span style="color: #a020f0;">size</span>(x)-1)
|
|
|
|
|
<span style="color: #a020f0;">do</span> i=1,<span style="color: #a020f0;">size</span>(x)
|
|
|
|
|
x(i) = -5.d0 + (i-1)*dx
|
|
|
|
|
<span style="color: #a020f0;">end do</span>
|
|
|
|
|
|
|
|
|
|
delta = dx**3
|
|
|
|
|
|
|
|
|
|
r(:) = 0.d0
|
|
|
|
|
|
|
|
|
|
<span style="color: #a020f0;">do</span> j=1,<span style="color: #a020f0;">size</span>(a)
|
|
|
|
|
! <span style="color: #b22222;">TODO</span>
|
|
|
|
|
<span style="color: #a020f0;">print</span> *, <span style="color: #8b2252;">'a = '</span>, a(j), <span style="color: #8b2252;">' E = '</span>, energy, <span style="color: #8b2252;">' s2 = '</span>, s2
|
|
|
|
|
<span style="color: #a020f0;">end do</span>
|
|
|
|
|
|
|
|
|
|
<span style="color: #a020f0;">end program</span> <span style="color: #0000ff;">variance_hydrogen</span>
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
2021-01-13 18:02:56 +01:00
|
|
|
|
|
|
|
|
<p>
|
2021-01-25 23:54:27 +01:00
|
|
|
To compile and run:
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
2021-01-25 23:54:27 +01:00
|
|
|
|
|
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-sh">gfortran hydrogen.f90 variance_hydrogen.f90 -o variance_hydrogen
|
|
|
|
|
./variance_hydrogen
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-org119dad1" class="outline-5">
|
|
|
|
|
<h5 id="org119dad1"><span class="section-number-5">2.4.2.4</span> Fortran   <span class="tag"><span class="solution">solution</span></span></h5>
|
2021-01-25 23:54:27 +01:00
|
|
|
<div class="outline-text-5" id="text-2-4-2-4">
|
2021-01-13 18:02:56 +01:00
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-f90"><span style="color: #a020f0;">program</span> <span style="color: #0000ff;">variance_hydrogen</span>
|
|
|
|
|
<span style="color: #a020f0;">implicit</span> <span style="color: #228b22;">none</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">external</span> ::<span style="color: #a0522d;"> e_loc, psi</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span> ::<span style="color: #a0522d;"> x(50), w, delta, energy, dx, r(3), a(6), norm, s2</span>
|
2021-01-20 21:19:31 +01:00
|
|
|
<span style="color: #228b22;">double precision</span> ::<span style="color: #a0522d;"> e, energy2</span>
|
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|
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|
<span style="color: #228b22;">integer</span> ::<span style="color: #a0522d;"> i, k, l, j</span>
|
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|
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|
a = (/ 0.1d0, 0.2d0, 0.5d0, 1.d0, 1.5d0, 2.d0 /)
|
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|
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|
|
dx = 10.d0/(<span style="color: #a020f0;">size</span>(x)-1)
|
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|
<span style="color: #a020f0;">do</span> i=1,<span style="color: #a020f0;">size</span>(x)
|
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|
x(i) = -5.d0 + (i-1)*dx
|
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|
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|
<span style="color: #a020f0;">end do</span>
|
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|
delta = dx**3
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|
r(:) = 0.d0
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|
<span style="color: #a020f0;">do</span> j=1,<span style="color: #a020f0;">size</span>(a)
|
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|
|
|
energy = 0.d0
|
2021-01-20 21:19:31 +01:00
|
|
|
energy2 = 0.d0
|
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|
|
|
norm = 0.d0
|
|
|
|
|
<span style="color: #a020f0;">do</span> i=1,<span style="color: #a020f0;">size</span>(x)
|
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|
|
r(1) = x(i)
|
|
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|
|
<span style="color: #a020f0;">do</span> k=1,<span style="color: #a020f0;">size</span>(x)
|
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|
|
r(2) = x(k)
|
|
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|
|
<span style="color: #a020f0;">do</span> l=1,<span style="color: #a020f0;">size</span>(x)
|
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|
|
r(3) = x(l)
|
|
|
|
|
w = psi(a(j),r)
|
|
|
|
|
w = w * w * delta
|
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|
|
|
e = e_loc(a(j), r)
|
|
|
|
|
energy = energy + w * e
|
|
|
|
|
energy2 = energy2 + w * e * e
|
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|
|
|
norm = norm + w
|
|
|
|
|
<span style="color: #a020f0;">end do</span>
|
|
|
|
|
<span style="color: #a020f0;">end do</span>
|
|
|
|
|
<span style="color: #a020f0;">end do</span>
|
2021-01-20 21:19:31 +01:00
|
|
|
energy = energy / norm
|
|
|
|
|
energy2 = energy2 / norm
|
|
|
|
|
s2 = energy2 - energy*energy
|
2021-01-13 18:02:56 +01:00
|
|
|
<span style="color: #a020f0;">print</span> *, <span style="color: #8b2252;">'a = '</span>, a(j), <span style="color: #8b2252;">' E = '</span>, energy, <span style="color: #8b2252;">' s2 = '</span>, s2
|
|
|
|
|
<span style="color: #a020f0;">end do</span>
|
|
|
|
|
|
|
|
|
|
<span style="color: #a020f0;">end program</span> <span style="color: #0000ff;">variance_hydrogen</span>
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
To compile and run:
|
|
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-sh">gfortran hydrogen.f90 variance_hydrogen.f90 -o variance_hydrogen
|
|
|
|
|
./variance_hydrogen
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
|
|
|
|
|
<pre class="example">
|
2021-01-20 21:19:31 +01:00
|
|
|
a = 0.10000000000000001 E = -0.24518438948809140 s2 = 2.6965218719722767E-002
|
|
|
|
|
a = 0.20000000000000001 E = -0.26966057967803236 s2 = 3.7197072370201284E-002
|
|
|
|
|
a = 0.50000000000000000 E = -0.38563576125173815 s2 = 5.3185967578480653E-002
|
2021-01-13 18:02:56 +01:00
|
|
|
a = 1.0000000000000000 E = -0.50000000000000000 s2 = 0.0000000000000000
|
2021-01-20 21:19:31 +01:00
|
|
|
a = 1.5000000000000000 E = -0.39242967082602065 s2 = 0.31449670909172917
|
|
|
|
|
a = 2.0000000000000000 E = -8.0869806678448772E-002 s2 = 1.8068814270846534
|
2021-01-13 18:02:56 +01:00
|
|
|
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
2021-01-25 23:54:27 +01:00
|
|
|
</div>
|
2021-01-13 18:02:56 +01:00
|
|
|
|
|
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-org0c2fa9b" class="outline-2">
|
|
|
|
|
<h2 id="org0c2fa9b"><span class="section-number-2">3</span> Variational Monte Carlo</h2>
|
2021-01-13 18:02:56 +01:00
|
|
|
<div class="outline-text-2" id="text-3">
|
|
|
|
|
<p>
|
|
|
|
|
Numerical integration with deterministic methods is very efficient
|
|
|
|
|
in low dimensions. When the number of dimensions becomes large,
|
|
|
|
|
instead of computing the average energy as a numerical integration
|
|
|
|
|
on a grid, it is usually more efficient to do a Monte Carlo sampling.
|
|
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
Moreover, a Monte Carlo sampling will alow us to remove the bias due
|
|
|
|
|
to the discretization of space, and compute a statistical confidence
|
|
|
|
|
interval.
|
|
|
|
|
</p>
|
|
|
|
|
</div>
|
|
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-org4e85021" class="outline-3">
|
|
|
|
|
<h3 id="org4e85021"><span class="section-number-3">3.1</span> Computation of the statistical error</h3>
|
2021-01-13 18:02:56 +01:00
|
|
|
<div class="outline-text-3" id="text-3-1">
|
|
|
|
|
<p>
|
|
|
|
|
To compute the statistical error, you need to perform \(M\)
|
|
|
|
|
independent Monte Carlo calculations. You will obtain \(M\) different
|
|
|
|
|
estimates of the energy, which are expected to have a Gaussian
|
2021-01-26 00:23:42 +01:00
|
|
|
distribution according to the <a href="https://en.wikipedia.org/wiki/Central_limit_theorem">Central Limit Theorem</a>.
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
The estimate of the energy is
|
|
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
\[
|
|
|
|
|
E = \frac{1}{M} \sum_{i=1}^M E_M
|
|
|
|
|
\]
|
|
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
The variance of the average energies can be computed as
|
|
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
\[
|
|
|
|
|
\sigma^2 = \frac{1}{M-1} \sum_{i=1}^{M} (E_M - E)^2
|
|
|
|
|
\]
|
|
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
And the confidence interval is given by
|
|
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
\[
|
|
|
|
|
E \pm \delta E, \text{ where } \delta E = \frac{\sigma}{\sqrt{M}}
|
|
|
|
|
\]
|
|
|
|
|
</p>
|
|
|
|
|
</div>
|
|
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-orga3687ff" class="outline-4">
|
|
|
|
|
<h4 id="orga3687ff"><span class="section-number-4">3.1.1</span> Exercise</h4>
|
2021-01-13 18:02:56 +01:00
|
|
|
<div class="outline-text-4" id="text-3-1-1">
|
|
|
|
|
<div class="exercise">
|
|
|
|
|
<p>
|
|
|
|
|
Write a function returning the average and statistical error of an
|
|
|
|
|
input array.
|
|
|
|
|
</p>
|
|
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
</div>
|
2021-01-13 18:02:56 +01:00
|
|
|
</div>
|
|
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-org568b394" class="outline-5">
|
|
|
|
|
<h5 id="org568b394"><span class="section-number-5">3.1.1.1</span> Python</h5>
|
|
|
|
|
<div class="outline-text-5" id="text-3-1-1-1">
|
|
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-python"><span style="color: #a020f0;">from</span> math <span style="color: #a020f0;">import</span> sqrt
|
|
|
|
|
<span style="color: #a020f0;">def</span> <span style="color: #0000ff;">ave_error</span>(arr):
|
|
|
|
|
#<span style="color: #b22222;">TODO</span>
|
|
|
|
|
<span style="color: #a020f0;">return</span> (average, error)
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
|
|
|
|
|
<div id="outline-container-org3d69b65" class="outline-5">
|
|
|
|
|
<h5 id="org3d69b65"><span class="section-number-5">3.1.1.2</span> Python   <span class="tag"><span class="solution">solution</span></span></h5>
|
|
|
|
|
<div class="outline-text-5" id="text-3-1-1-2">
|
2021-01-13 18:02:56 +01:00
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-python"><span style="color: #a020f0;">from</span> math <span style="color: #a020f0;">import</span> sqrt
|
|
|
|
|
<span style="color: #a020f0;">def</span> <span style="color: #0000ff;">ave_error</span>(arr):
|
|
|
|
|
<span style="color: #a0522d;">M</span> = <span style="color: #483d8b;">len</span>(arr)
|
2021-01-26 00:23:42 +01:00
|
|
|
<span style="color: #a020f0;">assert</span>(M>0)
|
|
|
|
|
<span style="color: #a020f0;">if</span> M == 1:
|
|
|
|
|
<span style="color: #a020f0;">return</span> (arr[0], 0.)
|
|
|
|
|
<span style="color: #a020f0;">else</span>:
|
|
|
|
|
<span style="color: #a0522d;">average</span> = <span style="color: #483d8b;">sum</span>(arr)/M
|
|
|
|
|
<span style="color: #a0522d;">variance</span> = 1./(M-1) * <span style="color: #483d8b;">sum</span>( [ (x - average)**2 <span style="color: #a020f0;">for</span> x <span style="color: #a020f0;">in</span> arr ] )
|
|
|
|
|
<span style="color: #a0522d;">error</span> = sqrt(variance/M)
|
|
|
|
|
<span style="color: #a020f0;">return</span> (average, error)
|
2021-01-13 18:02:56 +01:00
|
|
|
</pre>
|
|
|
|
|
</div>
|
2021-01-26 00:23:42 +01:00
|
|
|
</div>
|
|
|
|
|
</div>
|
2021-01-13 18:02:56 +01:00
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-org314b0e7" class="outline-5">
|
|
|
|
|
<h5 id="org314b0e7"><span class="section-number-5">3.1.1.3</span> Fortran</h5>
|
|
|
|
|
<div class="outline-text-5" id="text-3-1-1-3">
|
|
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-f90"><span style="color: #a020f0;">subroutine</span> <span style="color: #0000ff;">ave_error</span>(x,n,ave,err)
|
|
|
|
|
<span style="color: #a020f0;">implicit</span> <span style="color: #228b22;">none</span>
|
|
|
|
|
<span style="color: #228b22;">integer</span>, <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> n </span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> x(n) </span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">intent</span>(out) ::<span style="color: #a0522d;"> ave, err</span>
|
|
|
|
|
! <span style="color: #b22222;">TODO</span>
|
|
|
|
|
<span style="color: #a020f0;">end subroutine</span> <span style="color: #0000ff;">ave_error</span>
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
|
|
|
|
|
<div id="outline-container-org0f8bdcf" class="outline-5">
|
|
|
|
|
<h5 id="org0f8bdcf"><span class="section-number-5">3.1.1.4</span> Fortran   <span class="tag"><span class="solution">solution</span></span></h5>
|
|
|
|
|
<div class="outline-text-5" id="text-3-1-1-4">
|
2021-01-13 18:02:56 +01:00
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-f90"><span style="color: #a020f0;">subroutine</span> <span style="color: #0000ff;">ave_error</span>(x,n,ave,err)
|
|
|
|
|
<span style="color: #a020f0;">implicit</span> <span style="color: #228b22;">none</span>
|
|
|
|
|
<span style="color: #228b22;">integer</span>, <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> n </span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> x(n) </span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">intent</span>(out) ::<span style="color: #a0522d;"> ave, err</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span> ::<span style="color: #a0522d;"> variance</span>
|
2021-01-26 00:23:42 +01:00
|
|
|
<span style="color: #a020f0;">if</span> (n < 1) <span style="color: #a020f0;">then</span>
|
|
|
|
|
<span style="color: #a020f0;">stop</span> <span style="color: #8b2252;">'n<1 in ave_error'</span>
|
|
|
|
|
<span style="color: #a020f0;">else if</span> (n == 1) <span style="color: #a020f0;">then</span>
|
2021-01-13 18:02:56 +01:00
|
|
|
ave = x(1)
|
|
|
|
|
err = 0.d0
|
|
|
|
|
<span style="color: #a020f0;">else</span>
|
|
|
|
|
ave = <span style="color: #a020f0;">sum</span>(x(:)) / <span style="color: #a020f0;">dble</span>(n)
|
|
|
|
|
variance = <span style="color: #a020f0;">sum</span>( (x(:) - ave)**2 ) / <span style="color: #a020f0;">dble</span>(n-1)
|
|
|
|
|
err = dsqrt(variance/<span style="color: #a020f0;">dble</span>(n))
|
|
|
|
|
<span style="color: #a020f0;">endif</span>
|
|
|
|
|
<span style="color: #a020f0;">end subroutine</span> <span style="color: #0000ff;">ave_error</span>
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
2021-01-26 00:23:42 +01:00
|
|
|
</div>
|
2021-01-13 18:02:56 +01:00
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-orgb0930a1" class="outline-3">
|
|
|
|
|
<h3 id="orgb0930a1"><span class="section-number-3">3.2</span> <span class="todo TODO">TODO</span> Uniform sampling in the box</h3>
|
2021-01-13 18:02:56 +01:00
|
|
|
<div class="outline-text-3" id="text-3-2">
|
|
|
|
|
<p>
|
|
|
|
|
We will now do our first Monte Carlo calculation to compute the
|
|
|
|
|
energy of the hydrogen atom.
|
|
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
At every Monte Carlo step:
|
|
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<ul class="org-ul">
|
|
|
|
|
<li>Draw a random point \(\mathbf{r}_i\) in the box \((-5,-5,-5) \le
|
|
|
|
|
(x,y,z) \le (5,5,5)\)</li>
|
|
|
|
|
<li>Compute \([\Psi(\mathbf{r}_i)]^2\) and accumulate the result in a
|
|
|
|
|
variable <code>normalization</code></li>
|
|
|
|
|
<li>Compute \([\Psi(\mathbf{r}_i)]^2 \times E_L(\mathbf{r}_i)\), and accumulate the
|
|
|
|
|
result in a variable <code>energy</code></li>
|
|
|
|
|
</ul>
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
One Monte Carlo run will consist of \(N\) Monte Carlo steps. Once all the
|
|
|
|
|
steps have been computed, the run returns the average energy
|
|
|
|
|
\(\bar{E}_k\) over the \(N\) steps of the run.
|
|
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
To compute the statistical error, perform \(M\) runs. The final
|
|
|
|
|
estimate of the energy will be the average over the \(\bar{E}_k\),
|
|
|
|
|
and the variance of the \(\bar{E}_k\) will be used to compute the
|
|
|
|
|
statistical error.
|
|
|
|
|
</p>
|
|
|
|
|
</div>
|
|
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-org1ecf130" class="outline-4">
|
|
|
|
|
<h4 id="org1ecf130"><span class="section-number-4">3.2.1</span> Exercise</h4>
|
2021-01-13 18:02:56 +01:00
|
|
|
<div class="outline-text-4" id="text-3-2-1">
|
|
|
|
|
<div class="exercise">
|
|
|
|
|
<p>
|
|
|
|
|
Parameterize the wave function with \(a=0.9\). Perform 30
|
|
|
|
|
independent Monte Carlo runs, each with 100 000 Monte Carlo
|
|
|
|
|
steps. Store the final energies of each run and use this array to
|
|
|
|
|
compute the average energy and the associated error bar.
|
|
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
</div>
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
<b>Python</b>
|
|
|
|
|
</p>
|
|
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-python"><span style="color: #a020f0;">from</span> hydrogen <span style="color: #a020f0;">import</span> *
|
|
|
|
|
<span style="color: #a020f0;">from</span> qmc_stats <span style="color: #a020f0;">import</span> *
|
|
|
|
|
|
|
|
|
|
<span style="color: #a020f0;">def</span> <span style="color: #0000ff;">MonteCarlo</span>(a, nmax):
|
|
|
|
|
<span style="color: #a0522d;">E</span> = 0.
|
|
|
|
|
<span style="color: #a0522d;">N</span> = 0.
|
|
|
|
|
<span style="color: #a020f0;">for</span> istep <span style="color: #a020f0;">in</span> <span style="color: #483d8b;">range</span>(nmax):
|
|
|
|
|
<span style="color: #a0522d;">r</span> = np.random.uniform(-5., 5., (3))
|
|
|
|
|
<span style="color: #a0522d;">w</span> = psi(a,r)
|
|
|
|
|
<span style="color: #a0522d;">w</span> = w*w
|
|
|
|
|
<span style="color: #a0522d;">N</span> += w
|
|
|
|
|
<span style="color: #a0522d;">E</span> += w * e_loc(a,r)
|
|
|
|
|
<span style="color: #a020f0;">return</span> E/N
|
|
|
|
|
|
|
|
|
|
<span style="color: #a0522d;">a</span> = 0.9
|
|
|
|
|
<span style="color: #a0522d;">nmax</span> = 100000
|
|
|
|
|
<span style="color: #a0522d;">X</span> = [MonteCarlo(a,nmax) <span style="color: #a020f0;">for</span> i <span style="color: #a020f0;">in</span> <span style="color: #483d8b;">range</span>(30)]
|
|
|
|
|
<span style="color: #a0522d;">E</span>, <span style="color: #a0522d;">deltaE</span> = ave_error(X)
|
|
|
|
|
<span style="color: #a020f0;">print</span>(f<span style="color: #8b2252;">"E = {E} +/- {deltaE}"</span>)
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
<b>Fortran</b>
|
|
|
|
|
</p>
|
|
|
|
|
<div class="note">
|
|
|
|
|
<p>
|
|
|
|
|
When running Monte Carlo calculations, the number of steps is
|
|
|
|
|
usually very large. We expect <code>nmax</code> to be possibly larger than 2
|
|
|
|
|
billion, so we use 8-byte integers (<code>integer*8</code>) to represent it, as
|
|
|
|
|
well as the index of the current step.
|
|
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
</div>
|
|
|
|
|
|
|
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-f90"><span style="color: #a020f0;">subroutine</span> <span style="color: #0000ff;">uniform_montecarlo</span>(a,nmax,energy)
|
|
|
|
|
<span style="color: #a020f0;">implicit</span> <span style="color: #228b22;">none</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> a</span>
|
|
|
|
|
<span style="color: #228b22;">integer</span>*8 , <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> nmax </span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">intent</span>(out) ::<span style="color: #a0522d;"> energy</span>
|
|
|
|
|
|
|
|
|
|
<span style="color: #228b22;">integer</span>*8 ::<span style="color: #a0522d;"> istep</span>
|
|
|
|
|
|
|
|
|
|
<span style="color: #228b22;">double precision</span> ::<span style="color: #a0522d;"> norm, r(3), w</span>
|
|
|
|
|
|
|
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">external</span> ::<span style="color: #a0522d;"> e_loc, psi</span>
|
|
|
|
|
|
|
|
|
|
energy = 0.d0
|
|
|
|
|
norm = 0.d0
|
|
|
|
|
<span style="color: #a020f0;">do</span> istep = 1,nmax
|
|
|
|
|
<span style="color: #a020f0;">call</span> <span style="color: #0000ff;">random_number</span>(r)
|
|
|
|
|
r(:) = -5.d0 + 10.d0*r(:)
|
|
|
|
|
w = psi(a,r)
|
|
|
|
|
w = w*w
|
|
|
|
|
norm = norm + w
|
|
|
|
|
energy = energy + w * e_loc(a,r)
|
|
|
|
|
<span style="color: #a020f0;">end do</span>
|
|
|
|
|
energy = energy / norm
|
|
|
|
|
<span style="color: #a020f0;">end subroutine</span> <span style="color: #0000ff;">uniform_montecarlo</span>
|
|
|
|
|
|
|
|
|
|
<span style="color: #a020f0;">program</span> <span style="color: #0000ff;">qmc</span>
|
|
|
|
|
<span style="color: #a020f0;">implicit</span> <span style="color: #228b22;">none</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">parameter</span> ::<span style="color: #a0522d;"> a = 0.9</span>
|
|
|
|
|
<span style="color: #228b22;">integer</span>*8 , <span style="color: #a020f0;">parameter</span> ::<span style="color: #a0522d;"> nmax = 100000</span>
|
|
|
|
|
<span style="color: #228b22;">integer</span> , <span style="color: #a020f0;">parameter</span> ::<span style="color: #a0522d;"> nruns = 30</span>
|
|
|
|
|
|
|
|
|
|
<span style="color: #228b22;">integer</span> ::<span style="color: #a0522d;"> irun</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span> ::<span style="color: #a0522d;"> X(nruns)</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span> ::<span style="color: #a0522d;"> ave, err</span>
|
|
|
|
|
|
|
|
|
|
<span style="color: #a020f0;">do</span> irun=1,nruns
|
|
|
|
|
<span style="color: #a020f0;">call</span> <span style="color: #0000ff;">uniform_montecarlo</span>(a,nmax,X(irun))
|
|
|
|
|
<span style="color: #a020f0;">enddo</span>
|
|
|
|
|
<span style="color: #a020f0;">call</span> <span style="color: #0000ff;">ave_error</span>(X,nruns,ave,err)
|
|
|
|
|
<span style="color: #a020f0;">print</span> *, <span style="color: #8b2252;">'E = '</span>, ave, <span style="color: #8b2252;">'+/-'</span>, err
|
|
|
|
|
<span style="color: #a020f0;">end program</span> <span style="color: #0000ff;">qmc</span>
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
|
|
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-sh">gfortran hydrogen.f90 qmc_stats.f90 qmc_uniform.f90 -o qmc_uniform
|
|
|
|
|
./qmc_uniform
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
|
|
|
|
|
<pre class="example">
|
|
|
|
|
E = -0.49588321986667677 +/- 7.1758863546737969E-004
|
|
|
|
|
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-org5d0adc4" class="outline-3">
|
|
|
|
|
<h3 id="org5d0adc4"><span class="section-number-3">3.3</span> <span class="todo TODO">TODO</span> Metropolis sampling with \(\Psi^2\)</h3>
|
2021-01-13 18:02:56 +01:00
|
|
|
<div class="outline-text-3" id="text-3-3">
|
|
|
|
|
<p>
|
2021-01-20 19:13:44 +01:00
|
|
|
We will now use the square of the wave function to sample random
|
|
|
|
|
points distributed with the probability density
|
|
|
|
|
\[
|
|
|
|
|
P(\mathbf{r}) = \left[\Psi(\mathbf{r})\right]^2
|
|
|
|
|
\]
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
2021-01-20 19:13:44 +01:00
|
|
|
The expression of the average energy is now simplified to the average of
|
|
|
|
|
the local energies, since the weights are taken care of by the
|
|
|
|
|
sampling :
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
2021-01-20 19:13:44 +01:00
|
|
|
\[
|
|
|
|
|
E \approx \frac{1}{M}\sum_{i=1}^M E_L(\mathbf{r}_i)
|
|
|
|
|
\]
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<p>
|
2021-01-20 19:13:44 +01:00
|
|
|
To sample a chosen probability density, an efficient method is the
|
|
|
|
|
<a href="https://en.wikipedia.org/wiki/Metropolis%E2%80%93Hastings_algorithm">Metropolis-Hastings sampling algorithm</a>. Starting from a random
|
|
|
|
|
initial position \(\mathbf{r}_0\), we will realize a random walk as follows:
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
2021-01-20 19:13:44 +01:00
|
|
|
\[
|
|
|
|
|
\mathbf{r}_{n+1} = \mathbf{r}_{n} + \tau \mathbf{u}
|
|
|
|
|
\]
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
2021-01-20 19:13:44 +01:00
|
|
|
where \(\tau\) is a fixed constant (the so-called <i>time-step</i>), and
|
|
|
|
|
\(\mathbf{u}\) is a uniform random number in a 3-dimensional box
|
|
|
|
|
\((-1,-1,-1) \le \mathbf{u} \le (1,1,1)\). We will then add the
|
|
|
|
|
accept/reject step that will guarantee that the distribution of the
|
|
|
|
|
\(\mathbf{r}_n\) is \(\Psi^2\):
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
|
2021-01-20 19:13:44 +01:00
|
|
|
<ul class="org-ul">
|
|
|
|
|
<li>Compute a new position \(\mathbf{r}_{n+1}\)</li>
|
|
|
|
|
<li>Draw a uniform random number \(v \in [0,1]\)</li>
|
|
|
|
|
<li>Compute the ratio \(R = \frac{\left[\Psi(\mathbf{r}_{n+1})\right]^2}{\left[\Psi(\mathbf{r}_{n})\right]^2}\)</li>
|
|
|
|
|
<li>if \(v \le R\), accept the move (do nothing)</li>
|
|
|
|
|
<li>else, reject the move (set \(\mathbf{r}_{n+1} = \mathbf{r}_n\))</li>
|
|
|
|
|
<li>evaluate the local energy at \(\mathbf{r}_{n+1}\)</li>
|
|
|
|
|
</ul>
|
|
|
|
|
|
|
|
|
|
<div class="note">
|
2021-01-13 18:02:56 +01:00
|
|
|
<p>
|
2021-01-20 19:13:44 +01:00
|
|
|
A common error is to remove the rejected samples from the
|
|
|
|
|
calculation of the average. <b>Don't do it!</b>
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
2021-01-20 19:13:44 +01:00
|
|
|
All samples should be kept, from both accepted and rejected moves.
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
|
2021-01-20 19:13:44 +01:00
|
|
|
</div>
|
|
|
|
|
|
2021-01-13 18:02:56 +01:00
|
|
|
<p>
|
2021-01-20 19:13:44 +01:00
|
|
|
If the time step is infinitely small, the ratio will be very close
|
|
|
|
|
to one and all the steps will be accepted. But the trajectory will
|
|
|
|
|
be infinitely too short to have statistical significance.
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
2021-01-20 19:13:44 +01:00
|
|
|
On the other hand, as the time step increases, the number of
|
|
|
|
|
accepted steps will decrease because the ratios might become
|
|
|
|
|
small. If the number of accepted steps is close to zero, then the
|
|
|
|
|
space is not well sampled either.
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
2021-01-20 19:13:44 +01:00
|
|
|
The time step should be adjusted so that it is as large as
|
|
|
|
|
possible, keeping the number of accepted steps not too small. To
|
|
|
|
|
achieve that we define the acceptance rate as the number of
|
|
|
|
|
accepted steps over the total number of steps. Adjusting the time
|
|
|
|
|
step such that the acceptance rate is close to 0.5 is a good compromise.
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
</div>
|
|
|
|
|
|
|
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-orgb3a648e" class="outline-4">
|
|
|
|
|
<h4 id="orgb3a648e"><span class="section-number-4">3.3.1</span> Exercise</h4>
|
2021-01-13 18:02:56 +01:00
|
|
|
<div class="outline-text-4" id="text-3-3-1">
|
|
|
|
|
<div class="exercise">
|
|
|
|
|
<p>
|
2021-01-20 19:13:44 +01:00
|
|
|
Modify the program of the previous section to compute the energy, sampling with
|
|
|
|
|
\(Psi^2\).
|
|
|
|
|
Compute also the acceptance rate, so that you can adapt the time
|
|
|
|
|
step in order to have an acceptance rate close to 0.5 .
|
|
|
|
|
Can you observe a reduction in the statistical error?
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
</div>
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
<b>Python</b>
|
|
|
|
|
</p>
|
|
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-python"><span style="color: #a020f0;">from</span> hydrogen <span style="color: #a020f0;">import</span> *
|
|
|
|
|
<span style="color: #a020f0;">from</span> qmc_stats <span style="color: #a020f0;">import</span> *
|
|
|
|
|
|
2021-01-20 19:13:44 +01:00
|
|
|
<span style="color: #a020f0;">def</span> <span style="color: #0000ff;">MonteCarlo</span>(a,nmax,tau):
|
2021-01-13 18:02:56 +01:00
|
|
|
<span style="color: #a0522d;">E</span> = 0.
|
|
|
|
|
<span style="color: #a0522d;">N</span> = 0.
|
2021-01-20 19:13:44 +01:00
|
|
|
<span style="color: #a0522d;">N_accep</span> = 0.
|
|
|
|
|
<span style="color: #a0522d;">r_old</span> = np.random.uniform(-tau, tau, (3))
|
|
|
|
|
<span style="color: #a0522d;">psi_old</span> = psi(a,r_old)
|
2021-01-13 18:02:56 +01:00
|
|
|
<span style="color: #a020f0;">for</span> istep <span style="color: #a020f0;">in</span> <span style="color: #483d8b;">range</span>(nmax):
|
2021-01-20 19:13:44 +01:00
|
|
|
<span style="color: #a0522d;">r_new</span> = r_old + np.random.uniform(-tau,tau,(3))
|
|
|
|
|
<span style="color: #a0522d;">psi_new</span> = psi(a,r_new)
|
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|
<span style="color: #a0522d;">ratio</span> = (psi_new / psi_old)**2
|
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|
<span style="color: #a0522d;">v</span> = np.random.uniform(0,1,(1))
|
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|
<span style="color: #a020f0;">if</span> v < ratio:
|
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|
|
<span style="color: #a0522d;">N_accep</span> += 1.
|
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|
<span style="color: #a0522d;">r_old</span> = r_new
|
|
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|
|
<span style="color: #a0522d;">psi_old</span> = psi_new
|
|
|
|
|
<span style="color: #a0522d;">N</span> += 1.
|
|
|
|
|
<span style="color: #a0522d;">E</span> += e_loc(a,r_old)
|
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|
<span style="color: #a020f0;">return</span> E/N, N_accep/N
|
2021-01-13 18:02:56 +01:00
|
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|
|
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|
<span style="color: #a0522d;">a</span> = 0.9
|
|
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|
<span style="color: #a0522d;">nmax</span> = 100000
|
2021-01-20 19:13:44 +01:00
|
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|
<span style="color: #a0522d;">tau</span> = 1.3
|
|
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|
|
<span style="color: #a0522d;">X0</span> = [ MonteCarlo(a,nmax,tau) <span style="color: #a020f0;">for</span> i <span style="color: #a020f0;">in</span> <span style="color: #483d8b;">range</span>(30)]
|
|
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|
|
<span style="color: #a0522d;">X</span> = [ x <span style="color: #a020f0;">for</span> x, _ <span style="color: #a020f0;">in</span> X0 ]
|
|
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<span style="color: #a0522d;">A</span> = [ x <span style="color: #a020f0;">for</span> _, x <span style="color: #a020f0;">in</span> X0 ]
|
2021-01-13 18:02:56 +01:00
|
|
|
<span style="color: #a0522d;">E</span>, <span style="color: #a0522d;">deltaE</span> = ave_error(X)
|
2021-01-20 19:13:44 +01:00
|
|
|
<span style="color: #a0522d;">A</span>, <span style="color: #a0522d;">deltaA</span> = ave_error(A)
|
2021-01-13 18:02:56 +01:00
|
|
|
<span style="color: #a020f0;">print</span>(f<span style="color: #8b2252;">"E = {E} +/- {deltaE}"</span>)
|
2021-01-20 19:13:44 +01:00
|
|
|
<span style="color: #a020f0;">print</span>(f<span style="color: #8b2252;">"A = {A} +/- {deltaA}"</span>)
|
2021-01-13 18:02:56 +01:00
|
|
|
</pre>
|
|
|
|
|
</div>
|
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|
<p>
|
|
|
|
|
<b>Fortran</b>
|
|
|
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</p>
|
|
|
|
|
<div class="org-src-container">
|
2021-01-20 19:13:44 +01:00
|
|
|
<pre class="src src-f90"><span style="color: #a020f0;">subroutine</span> <span style="color: #0000ff;">metropolis_montecarlo</span>(a,nmax,tau,energy,accep)
|
2021-01-13 18:02:56 +01:00
|
|
|
<span style="color: #a020f0;">implicit</span> <span style="color: #228b22;">none</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> a</span>
|
|
|
|
|
<span style="color: #228b22;">integer</span>*8 , <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> nmax </span>
|
2021-01-20 19:13:44 +01:00
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> tau</span>
|
2021-01-13 18:02:56 +01:00
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">intent</span>(out) ::<span style="color: #a0522d;"> energy</span>
|
2021-01-20 19:13:44 +01:00
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">intent</span>(out) ::<span style="color: #a0522d;"> accep</span>
|
2021-01-13 18:02:56 +01:00
|
|
|
|
|
|
|
|
<span style="color: #228b22;">integer</span>*8 ::<span style="color: #a0522d;"> istep</span>
|
|
|
|
|
|
2021-01-20 19:13:44 +01:00
|
|
|
<span style="color: #228b22;">double precision</span> ::<span style="color: #a0522d;"> norm, r_old(3), r_new(3), psi_old, psi_new</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span> ::<span style="color: #a0522d;"> v, ratio, n_accep</span>
|
2021-01-13 18:02:56 +01:00
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">external</span> ::<span style="color: #a0522d;"> e_loc, psi, gaussian</span>
|
|
|
|
|
|
|
|
|
|
energy = 0.d0
|
|
|
|
|
norm = 0.d0
|
2021-01-20 19:13:44 +01:00
|
|
|
n_accep = 0.d0
|
|
|
|
|
<span style="color: #a020f0;">call</span> <span style="color: #0000ff;">random_number</span>(r_old)
|
|
|
|
|
r_old(:) = tau * (2.d0*r_old(:) - 1.d0)
|
|
|
|
|
psi_old = psi(a,r_old)
|
2021-01-13 18:02:56 +01:00
|
|
|
<span style="color: #a020f0;">do</span> istep = 1,nmax
|
2021-01-20 19:13:44 +01:00
|
|
|
<span style="color: #a020f0;">call</span> <span style="color: #0000ff;">random_number</span>(r_new)
|
|
|
|
|
r_new(:) = r_old(:) + tau * (2.d0*r_new(:) - 1.d0)
|
|
|
|
|
psi_new = psi(a,r_new)
|
|
|
|
|
ratio = (psi_new / psi_old)**2
|
|
|
|
|
<span style="color: #a020f0;">call</span> <span style="color: #0000ff;">random_number</span>(v)
|
|
|
|
|
<span style="color: #a020f0;">if</span> (v < ratio) <span style="color: #a020f0;">then</span>
|
|
|
|
|
r_old(:) = r_new(:)
|
|
|
|
|
psi_old = psi_new
|
|
|
|
|
n_accep = n_accep + 1.d0
|
|
|
|
|
<span style="color: #a020f0;">endif</span>
|
|
|
|
|
norm = norm + 1.d0
|
|
|
|
|
energy = energy + e_loc(a,r_old)
|
2021-01-13 18:02:56 +01:00
|
|
|
<span style="color: #a020f0;">end do</span>
|
|
|
|
|
energy = energy / norm
|
2021-01-20 19:13:44 +01:00
|
|
|
accep = n_accep / norm
|
|
|
|
|
<span style="color: #a020f0;">end subroutine</span> <span style="color: #0000ff;">metropolis_montecarlo</span>
|
2021-01-13 18:02:56 +01:00
|
|
|
|
|
|
|
|
<span style="color: #a020f0;">program</span> <span style="color: #0000ff;">qmc</span>
|
|
|
|
|
<span style="color: #a020f0;">implicit</span> <span style="color: #228b22;">none</span>
|
2021-01-20 19:13:44 +01:00
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">parameter</span> ::<span style="color: #a0522d;"> a = 0.9d0</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">parameter</span> ::<span style="color: #a0522d;"> tau = 1.3d0</span>
|
2021-01-13 18:02:56 +01:00
|
|
|
<span style="color: #228b22;">integer</span>*8 , <span style="color: #a020f0;">parameter</span> ::<span style="color: #a0522d;"> nmax = 100000</span>
|
|
|
|
|
<span style="color: #228b22;">integer</span> , <span style="color: #a020f0;">parameter</span> ::<span style="color: #a0522d;"> nruns = 30</span>
|
|
|
|
|
|
|
|
|
|
<span style="color: #228b22;">integer</span> ::<span style="color: #a0522d;"> irun</span>
|
2021-01-20 19:13:44 +01:00
|
|
|
<span style="color: #228b22;">double precision</span> ::<span style="color: #a0522d;"> X(nruns), Y(nruns)</span>
|
2021-01-13 18:02:56 +01:00
|
|
|
<span style="color: #228b22;">double precision</span> ::<span style="color: #a0522d;"> ave, err</span>
|
|
|
|
|
|
|
|
|
|
<span style="color: #a020f0;">do</span> irun=1,nruns
|
2021-01-20 19:13:44 +01:00
|
|
|
<span style="color: #a020f0;">call</span> <span style="color: #0000ff;">metropolis_montecarlo</span>(a,nmax,tau,X(irun),Y(irun))
|
2021-01-13 18:02:56 +01:00
|
|
|
<span style="color: #a020f0;">enddo</span>
|
|
|
|
|
<span style="color: #a020f0;">call</span> <span style="color: #0000ff;">ave_error</span>(X,nruns,ave,err)
|
|
|
|
|
<span style="color: #a020f0;">print</span> *, <span style="color: #8b2252;">'E = '</span>, ave, <span style="color: #8b2252;">'+/-'</span>, err
|
2021-01-20 19:13:44 +01:00
|
|
|
<span style="color: #a020f0;">call</span> <span style="color: #0000ff;">ave_error</span>(Y,nruns,ave,err)
|
|
|
|
|
<span style="color: #a020f0;">print</span> *, <span style="color: #8b2252;">'A = '</span>, ave, <span style="color: #8b2252;">'+/-'</span>, err
|
2021-01-13 18:02:56 +01:00
|
|
|
<span style="color: #a020f0;">end program</span> <span style="color: #0000ff;">qmc</span>
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
|
|
|
|
|
<div class="org-src-container">
|
2021-01-20 19:13:44 +01:00
|
|
|
<pre class="src src-sh">gfortran hydrogen.f90 qmc_stats.f90 qmc_metropolis.f90 -o qmc_metropolis
|
|
|
|
|
./qmc_metropolis
|
2021-01-13 18:02:56 +01:00
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
<pre class="example">
|
2021-01-20 19:13:44 +01:00
|
|
|
E = -0.49478505004797046 +/- 2.0493795299184956E-004
|
|
|
|
|
A = 0.51737800000000000 +/- 4.1827406733181444E-004
|
2021-01-13 18:02:56 +01:00
|
|
|
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-orgb5348ef" class="outline-3">
|
|
|
|
|
<h3 id="orgb5348ef"><span class="section-number-3">3.4</span> <span class="todo TODO">TODO</span> Gaussian random number generator</h3>
|
2021-01-13 18:02:56 +01:00
|
|
|
<div class="outline-text-3" id="text-3-4">
|
|
|
|
|
<p>
|
2021-01-20 19:13:44 +01:00
|
|
|
To obtain Gaussian-distributed random numbers, you can apply the
|
|
|
|
|
<a href="https://en.wikipedia.org/wiki/Box%E2%80%93Muller_transform">Box Muller transform</a> to uniform random numbers:
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
|
2021-01-20 19:13:44 +01:00
|
|
|
\begin{eqnarray*}
|
|
|
|
|
z_1 &=& \sqrt{-2 \ln u_1} \cos(2 \pi u_2) \\
|
|
|
|
|
z_2 &=& \sqrt{-2 \ln u_1} \sin(2 \pi u_2)
|
|
|
|
|
\end{eqnarray*}
|
2021-01-13 18:02:56 +01:00
|
|
|
|
|
|
|
|
<p>
|
2021-01-20 19:13:44 +01:00
|
|
|
Below is a Fortran implementation returning a Gaussian-distributed
|
|
|
|
|
n-dimensional vector \(\mathbf{z}\). This will be useful for the
|
|
|
|
|
following sections.
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
2021-01-20 19:13:44 +01:00
|
|
|
<b>Fortran</b>
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
2021-01-20 19:13:44 +01:00
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-f90"><span style="color: #a020f0;">subroutine</span> <span style="color: #0000ff;">random_gauss</span>(z,n)
|
|
|
|
|
<span style="color: #a020f0;">implicit</span> <span style="color: #228b22;">none</span>
|
|
|
|
|
<span style="color: #228b22;">integer</span>, <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> n</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">intent</span>(out) ::<span style="color: #a0522d;"> z(n)</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span> ::<span style="color: #a0522d;"> u(n+1)</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">parameter</span> ::<span style="color: #a0522d;"> two_pi = 2.d0*dacos(-1.d0)</span>
|
|
|
|
|
<span style="color: #228b22;">integer</span> ::<span style="color: #a0522d;"> i</span>
|
2021-01-13 18:02:56 +01:00
|
|
|
|
2021-01-20 19:13:44 +01:00
|
|
|
<span style="color: #a020f0;">call</span> <span style="color: #0000ff;">random_number</span>(u)
|
|
|
|
|
<span style="color: #a020f0;">if</span> (<span style="color: #a020f0;">iand</span>(n,1) == 0) <span style="color: #a020f0;">then</span>
|
|
|
|
|
! <span style="color: #b22222;">n is even</span>
|
|
|
|
|
<span style="color: #a020f0;">do</span> i=1,n,2
|
|
|
|
|
z(i) = dsqrt(-2.d0*dlog(u(i)))
|
|
|
|
|
z(i+1) = z(i) * dsin( two_pi*u(i+1) )
|
|
|
|
|
z(i) = z(i) * dcos( two_pi*u(i+1) )
|
|
|
|
|
<span style="color: #a020f0;">end do</span>
|
|
|
|
|
<span style="color: #a020f0;">else</span>
|
|
|
|
|
! <span style="color: #b22222;">n is odd</span>
|
|
|
|
|
<span style="color: #a020f0;">do</span> i=1,n-1,2
|
|
|
|
|
z(i) = dsqrt(-2.d0*dlog(u(i)))
|
|
|
|
|
z(i+1) = z(i) * dsin( two_pi*u(i+1) )
|
|
|
|
|
z(i) = z(i) * dcos( two_pi*u(i+1) )
|
|
|
|
|
<span style="color: #a020f0;">end do</span>
|
|
|
|
|
z(n) = dsqrt(-2.d0*dlog(u(n)))
|
|
|
|
|
z(n) = z(n) * dcos( two_pi*u(n+1) )
|
|
|
|
|
<span style="color: #a020f0;">end if</span>
|
|
|
|
|
<span style="color: #a020f0;">end subroutine</span> <span style="color: #0000ff;">random_gauss</span>
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
2021-01-13 18:02:56 +01:00
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-org932bae5" class="outline-3">
|
|
|
|
|
<h3 id="org932bae5"><span class="section-number-3">3.5</span> <span class="todo TODO">TODO</span> Generalized Metropolis algorithm</h3>
|
2021-01-20 19:13:44 +01:00
|
|
|
<div class="outline-text-3" id="text-3-5">
|
2021-01-13 18:02:56 +01:00
|
|
|
<p>
|
2021-01-20 19:13:44 +01:00
|
|
|
One can use more efficient numerical schemes to move the electrons.
|
|
|
|
|
But in that case, the Metropolis accepation step has to be adapted
|
|
|
|
|
accordingly: the acceptance
|
|
|
|
|
probability \(A\) is chosen so that it is consistent with the
|
|
|
|
|
probability of leaving \(\mathbf{r}_n\) and the probability of
|
|
|
|
|
entering \(\mathbf{r}_{n+1}\):
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
2021-01-20 19:13:44 +01:00
|
|
|
\[ A(\mathbf{r}_{n} \rightarrow \mathbf{r}_{n+1}) = \min \left( 1,
|
|
|
|
|
\frac{T(\mathbf{r}_{n+1} \rightarrow \mathbf{r}_{n}) P(\mathbf{r}_{n+1})}
|
|
|
|
|
{T(\mathbf{r}_{n} \rightarrow \mathbf{r}_{n+1}) P(\mathbf{r}_{n})}
|
|
|
|
|
\right)
|
|
|
|
|
\]
|
|
|
|
|
where \(T(\mathbf{r}_n \rightarrow \mathbf{r}_{n+1})\) is the
|
|
|
|
|
probability of transition from \(\mathbf{r}_n\) to
|
|
|
|
|
\(\mathbf{r}_{n+1}\).
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
2021-01-20 19:13:44 +01:00
|
|
|
In the previous example, we were using uniform random
|
|
|
|
|
numbers. Hence, the transition probability was
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
2021-01-20 19:13:44 +01:00
|
|
|
\[
|
|
|
|
|
T(\mathbf{r}_{n} \rightarrow \mathbf{r}_{n+1}) & = &
|
|
|
|
|
\text{constant}
|
|
|
|
|
\]
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
2021-01-20 19:13:44 +01:00
|
|
|
So the expression of \(A\) was simplified to the ratios of the squared
|
|
|
|
|
wave functions.
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
2021-01-20 19:13:44 +01:00
|
|
|
Now, if instead of drawing uniform random numbers
|
|
|
|
|
choose to draw Gaussian random numbers with mean 0 and variance
|
|
|
|
|
\(\tau\), the transition probability becomes:
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
\[
|
2021-01-20 19:13:44 +01:00
|
|
|
T(\mathbf{r}_{n} \rightarrow \mathbf{r}_{n+1}) & = &
|
|
|
|
|
\frac{1}{(2\pi\,\tau)^{3/2}} \exp \left[ - \frac{\left(
|
|
|
|
|
\mathbf{r}_{n+1} - \mathbf{r}_{n} \right)^2}{2\tau} \right]
|
|
|
|
|
\]
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
|
2021-01-20 19:13:44 +01:00
|
|
|
|
2021-01-13 18:02:56 +01:00
|
|
|
<p>
|
2021-01-20 19:13:44 +01:00
|
|
|
To sample even better the density, we can "push" the electrons
|
|
|
|
|
into in the regions of high probability, and "pull" them away from
|
|
|
|
|
the low-probability regions. This will mechanically increase the
|
|
|
|
|
acceptance ratios and improve the sampling.
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
2021-01-20 19:13:44 +01:00
|
|
|
To do this, we can add the drift vector
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
2021-01-20 19:13:44 +01:00
|
|
|
\[
|
|
|
|
|
\frac{\nabla [ \Psi^2 ]}{\Psi^2} = 2 \frac{\nabla \Psi}{\Psi}
|
|
|
|
|
\].
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
2021-01-20 19:13:44 +01:00
|
|
|
The numerical scheme becomes a drifted diffusion:
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
2021-01-20 19:13:44 +01:00
|
|
|
\[
|
|
|
|
|
\mathbf{r}_{n+1} = \mathbf{r}_{n} + \tau \frac{\nabla
|
|
|
|
|
\Psi(\mathbf{r})}{\Psi(\mathbf{r})} + \chi
|
|
|
|
|
\]
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
2021-01-20 19:13:44 +01:00
|
|
|
where \(\chi\) is a Gaussian random variable with zero mean and
|
|
|
|
|
variance \(\tau\).
|
|
|
|
|
The transition probability becomes:
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
\[
|
2021-01-20 19:13:44 +01:00
|
|
|
T(\mathbf{r}_{n} \rightarrow \mathbf{r}_{n+1}) & = &
|
|
|
|
|
\frac{1}{(2\pi\,\tau)^{3/2}} \exp \left[ - \frac{\left(
|
|
|
|
|
\mathbf{r}_{n+1} - \mathbf{r}_{n} - \frac{\nabla
|
|
|
|
|
\Psi(\mathbf{r}_n)}{\Psi(\mathbf{r}_n)} \right)^2}{2\,\tau} \right]
|
|
|
|
|
\]
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
</div>
|
|
|
|
|
|
2021-01-20 19:13:44 +01:00
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-org460f3fe" class="outline-4">
|
|
|
|
|
<h4 id="org460f3fe"><span class="section-number-4">3.5.1</span> Exercise 1</h4>
|
2021-01-20 19:13:44 +01:00
|
|
|
<div class="outline-text-4" id="text-3-5-1">
|
2021-01-13 18:02:56 +01:00
|
|
|
<div class="exercise">
|
|
|
|
|
<p>
|
|
|
|
|
Write a function to compute the drift vector \(\frac{\nabla \Psi(\mathbf{r})}{\Psi(\mathbf{r})}\).
|
|
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
</div>
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
<b>Python</b>
|
|
|
|
|
</p>
|
|
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-python"><span style="color: #a020f0;">def</span> <span style="color: #0000ff;">drift</span>(a,r):
|
|
|
|
|
<span style="color: #a0522d;">ar_inv</span> = -a/np.sqrt(np.dot(r,r))
|
|
|
|
|
<span style="color: #a020f0;">return</span> r * ar_inv
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
<b>Fortran</b>
|
|
|
|
|
</p>
|
|
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-f90"><span style="color: #a020f0;">subroutine</span> <span style="color: #0000ff;">drift</span>(a,r,b)
|
|
|
|
|
<span style="color: #a020f0;">implicit</span> <span style="color: #228b22;">none</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> a, r(3)</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">intent</span>(out) ::<span style="color: #a0522d;"> b(3)</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span> ::<span style="color: #a0522d;"> ar_inv</span>
|
|
|
|
|
ar_inv = -a / dsqrt(r(1)*r(1) + r(2)*r(2) + r(3)*r(3))
|
|
|
|
|
b(:) = r(:) * ar_inv
|
|
|
|
|
<span style="color: #a020f0;">end subroutine</span> <span style="color: #0000ff;">drift</span>
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
|
2021-01-26 00:23:42 +01:00
|
|
|
<div id="outline-container-orgd39a7d7" class="outline-4">
|
|
|
|
|
<h4 id="orgd39a7d7"><span class="section-number-4">3.5.2</span> Exercise 2</h4>
|
2021-01-20 19:13:44 +01:00
|
|
|
<div class="outline-text-4" id="text-3-5-2">
|
2021-01-13 18:02:56 +01:00
|
|
|
<div class="exercise">
|
|
|
|
|
<p>
|
2021-01-20 19:13:44 +01:00
|
|
|
Modify the previous program to introduce the drifted diffusion scheme.
|
|
|
|
|
(This is a necessary step for the next section).
|
2021-01-13 18:02:56 +01:00
|
|
|
</p>
|
|
|
|
|
|
|
|
|
|
</div>
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
<b>Python</b>
|
|
|
|
|
</p>
|
|
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-python"><span style="color: #a020f0;">from</span> hydrogen <span style="color: #a020f0;">import</span> *
|
|
|
|
|
<span style="color: #a020f0;">from</span> qmc_stats <span style="color: #a020f0;">import</span> *
|
|
|
|
|
|
|
|
|
|
<span style="color: #a020f0;">def</span> <span style="color: #0000ff;">MonteCarlo</span>(a,tau,nmax):
|
|
|
|
|
<span style="color: #a0522d;">E</span> = 0.
|
|
|
|
|
<span style="color: #a0522d;">N</span> = 0.
|
|
|
|
|
<span style="color: #a0522d;">accep_rate</span> = 0.
|
|
|
|
|
<span style="color: #a0522d;">sq_tau</span> = np.sqrt(tau)
|
|
|
|
|
<span style="color: #a0522d;">r_old</span> = np.random.normal(loc=0., scale=1.0, size=(3))
|
|
|
|
|
<span style="color: #a0522d;">d_old</span> = drift(a,r_old)
|
|
|
|
|
<span style="color: #a0522d;">d2_old</span> = np.dot(d_old,d_old)
|
|
|
|
|
<span style="color: #a0522d;">psi_old</span> = psi(a,r_old)
|
|
|
|
|
<span style="color: #a020f0;">for</span> istep <span style="color: #a020f0;">in</span> <span style="color: #483d8b;">range</span>(nmax):
|
|
|
|
|
<span style="color: #a0522d;">chi</span> = np.random.normal(loc=0., scale=1.0, size=(3))
|
|
|
|
|
<span style="color: #a0522d;">r_new</span> = r_old + tau * d_old + sq_tau * chi
|
|
|
|
|
<span style="color: #a0522d;">d_new</span> = drift(a,r_new)
|
|
|
|
|
<span style="color: #a0522d;">d2_new</span> = np.dot(d_new,d_new)
|
|
|
|
|
<span style="color: #a0522d;">psi_new</span> = psi(a,r_new)
|
|
|
|
|
# <span style="color: #b22222;">Metropolis</span>
|
|
|
|
|
<span style="color: #a0522d;">prod</span> = np.dot((d_new + d_old), (r_new - r_old))
|
|
|
|
|
<span style="color: #a0522d;">argexpo</span> = 0.5 * (d2_new - d2_old)*tau + prod
|
|
|
|
|
<span style="color: #a0522d;">q</span> = psi_new / psi_old
|
|
|
|
|
<span style="color: #a0522d;">q</span> = np.exp(-argexpo) * q*q
|
|
|
|
|
<span style="color: #a020f0;">if</span> np.random.uniform() < q:
|
|
|
|
|
<span style="color: #a0522d;">accep_rate</span> += 1.
|
|
|
|
|
<span style="color: #a0522d;">r_old</span> = r_new
|
|
|
|
|
<span style="color: #a0522d;">d_old</span> = d_new
|
|
|
|
|
<span style="color: #a0522d;">d2_old</span> = d2_new
|
|
|
|
|
<span style="color: #a0522d;">psi_old</span> = psi_new
|
2021-01-21 23:25:25 +01:00
|
|
|
<span style="color: #a0522d;">N</span> += 1.
|
|
|
|
|
<span style="color: #a0522d;">E</span> += e_loc(a,r_old)
|
2021-01-13 18:02:56 +01:00
|
|
|
<span style="color: #a020f0;">return</span> E/N, accep_rate/N
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<span style="color: #a0522d;">a</span> = 0.9
|
|
|
|
|
<span style="color: #a0522d;">nmax</span> = 100000
|
|
|
|
|
<span style="color: #a0522d;">tau</span> = 1.0
|
|
|
|
|
<span style="color: #a0522d;">X</span> = [MonteCarlo(a,tau,nmax) <span style="color: #a020f0;">for</span> i <span style="color: #a020f0;">in</span> <span style="color: #483d8b;">range</span>(30)]
|
|
|
|
|
<span style="color: #a0522d;">E</span>, <span style="color: #a0522d;">deltaE</span> = ave_error([x[0] <span style="color: #a020f0;">for</span> x <span style="color: #a020f0;">in</span> X])
|
|
|
|
|
<span style="color: #a0522d;">A</span>, <span style="color: #a0522d;">deltaA</span> = ave_error([x[1] <span style="color: #a020f0;">for</span> x <span style="color: #a020f0;">in</span> X])
|
|
|
|
|
<span style="color: #a020f0;">print</span>(f<span style="color: #8b2252;">"E = {E} +/- {deltaE}\nA = {A} +/- {deltaA}"</span>)
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
<b>Fortran</b>
|
|
|
|
|
</p>
|
|
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-f90"><span style="color: #a020f0;">subroutine</span> <span style="color: #0000ff;">variational_montecarlo</span>(a,tau,nmax,energy,accep_rate)
|
|
|
|
|
<span style="color: #a020f0;">implicit</span> <span style="color: #228b22;">none</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> a, tau</span>
|
|
|
|
|
<span style="color: #228b22;">integer</span>*8 , <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> nmax </span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">intent</span>(out) ::<span style="color: #a0522d;"> energy, accep_rate</span>
|
|
|
|
|
|
|
|
|
|
<span style="color: #228b22;">integer</span>*8 ::<span style="color: #a0522d;"> istep</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span> ::<span style="color: #a0522d;"> norm, sq_tau, chi(3), d2_old, prod, u</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span> ::<span style="color: #a0522d;"> psi_old, psi_new, d2_new, argexpo, q</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span> ::<span style="color: #a0522d;"> r_old(3), r_new(3)</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span> ::<span style="color: #a0522d;"> d_old(3), d_new(3)</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">external</span> ::<span style="color: #a0522d;"> e_loc, psi</span>
|
|
|
|
|
|
|
|
|
|
sq_tau = dsqrt(tau)
|
|
|
|
|
|
|
|
|
|
! <span style="color: #b22222;">Initialization</span>
|
|
|
|
|
energy = 0.d0
|
|
|
|
|
norm = 0.d0
|
|
|
|
|
accep_rate = 0.d0
|
|
|
|
|
<span style="color: #a020f0;">call</span> <span style="color: #0000ff;">random_gauss</span>(r_old,3)
|
|
|
|
|
<span style="color: #a020f0;">call</span> <span style="color: #0000ff;">drift</span>(a,r_old,d_old)
|
|
|
|
|
d2_old = d_old(1)*d_old(1) + d_old(2)*d_old(2) + d_old(3)*d_old(3)
|
|
|
|
|
psi_old = psi(a,r_old)
|
|
|
|
|
|
|
|
|
|
<span style="color: #a020f0;">do</span> istep = 1,nmax
|
|
|
|
|
<span style="color: #a020f0;">call</span> <span style="color: #0000ff;">random_gauss</span>(chi,3)
|
|
|
|
|
r_new(:) = r_old(:) + tau * d_old(:) + chi(:)*sq_tau
|
|
|
|
|
<span style="color: #a020f0;">call</span> <span style="color: #0000ff;">drift</span>(a,r_new,d_new)
|
|
|
|
|
d2_new = d_new(1)*d_new(1) + d_new(2)*d_new(2) + d_new(3)*d_new(3)
|
|
|
|
|
psi_new = psi(a,r_new)
|
|
|
|
|
! <span style="color: #b22222;">Metropolis</span>
|
|
|
|
|
prod = (d_new(1) + d_old(1))*(r_new(1) - r_old(1)) + <span style="color: #a020f0;">&</span>
|
2021-01-20 19:13:44 +01:00
|
|
|
(d_new(2) + d_old(2))*(r_new(2) - r_old(2)) + <span style="color: #a020f0;">&</span>
|
|
|
|
|
(d_new(3) + d_old(3))*(r_new(3) - r_old(3))
|
2021-01-13 18:02:56 +01:00
|
|
|
argexpo = 0.5d0 * (d2_new - d2_old)*tau + prod
|
|
|
|
|
q = psi_new / psi_old
|
|
|
|
|
q = dexp(-argexpo) * q*q
|
|
|
|
|
<span style="color: #a020f0;">call</span> <span style="color: #0000ff;">random_number</span>(u)
|
|
|
|
|
<span style="color: #a020f0;">if</span> (u<q) <span style="color: #a020f0;">then</span>
|
|
|
|
|
accep_rate = accep_rate + 1.d0
|
|
|
|
|
r_old(:) = r_new(:)
|
|
|
|
|
d_old(:) = d_new(:)
|
|
|
|
|
d2_old = d2_new
|
|
|
|
|
psi_old = psi_new
|
|
|
|
|
<span style="color: #a020f0;">end if</span>
|
|
|
|
|
norm = norm + 1.d0
|
|
|
|
|
energy = energy + e_loc(a,r_old)
|
|
|
|
|
<span style="color: #a020f0;">end do</span>
|
|
|
|
|
energy = energy / norm
|
|
|
|
|
accep_rate = accep_rate / norm
|
|
|
|
|
<span style="color: #a020f0;">end subroutine</span> <span style="color: #0000ff;">variational_montecarlo</span>
|
|
|
|
|
|
|
|
|
|
<span style="color: #a020f0;">program</span> <span style="color: #0000ff;">qmc</span>
|
|
|
|
|
<span style="color: #a020f0;">implicit</span> <span style="color: #228b22;">none</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">parameter</span> ::<span style="color: #a0522d;"> a = 0.9</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">parameter</span> ::<span style="color: #a0522d;"> tau = 1.0</span>
|
|
|
|
|
<span style="color: #228b22;">integer</span>*8 , <span style="color: #a020f0;">parameter</span> ::<span style="color: #a0522d;"> nmax = 100000</span>
|
|
|
|
|
<span style="color: #228b22;">integer</span> , <span style="color: #a020f0;">parameter</span> ::<span style="color: #a0522d;"> nruns = 30</span>
|
|
|
|
|
|
|
|
|
|
<span style="color: #228b22;">integer</span> ::<span style="color: #a0522d;"> irun</span>
|
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|
|
|
<span style="color: #228b22;">double precision</span> ::<span style="color: #a0522d;"> X(nruns), accep(nruns)</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span> ::<span style="color: #a0522d;"> ave, err</span>
|
|
|
|
|
|
|
|
|
|
<span style="color: #a020f0;">do</span> irun=1,nruns
|
|
|
|
|
<span style="color: #a020f0;">call</span> <span style="color: #0000ff;">variational_montecarlo</span>(a,tau,nmax,X(irun),accep(irun))
|
|
|
|
|
<span style="color: #a020f0;">enddo</span>
|
|
|
|
|
<span style="color: #a020f0;">call</span> <span style="color: #0000ff;">ave_error</span>(X,nruns,ave,err)
|
|
|
|
|
<span style="color: #a020f0;">print</span> *, <span style="color: #8b2252;">'E = '</span>, ave, <span style="color: #8b2252;">'+/-'</span>, err
|
|
|
|
|
<span style="color: #a020f0;">call</span> <span style="color: #0000ff;">ave_error</span>(accep,nruns,ave,err)
|
|
|
|
|
<span style="color: #a020f0;">print</span> *, <span style="color: #8b2252;">'A = '</span>, ave, <span style="color: #8b2252;">'+/-'</span>, err
|
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|
|
|
<span style="color: #a020f0;">end program</span> <span style="color: #0000ff;">qmc</span>
|
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|
</pre>
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</div>
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|
<div class="org-src-container">
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|
|
<pre class="src src-sh">gfortran hydrogen.f90 qmc_stats.f90 vmc_metropolis.f90 -o vmc_metropolis
|
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|
|
|
./vmc_metropolis
|
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|
|
|
</pre>
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|
</div>
|
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|
<pre class="example">
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|
|
|
E = -0.49499990423528023 +/- 1.5958250761863871E-004
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|
A = 0.78861366666666655 +/- 3.5096729498002445E-004
|
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|
</pre>
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</div>
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</div>
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</div>
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</div>
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2021-01-26 00:23:42 +01:00
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<div id="outline-container-orgaf5996c" class="outline-2">
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<h2 id="orgaf5996c"><span class="section-number-2">4</span> <span class="todo TODO">TODO</span> Diffusion Monte Carlo</h2>
|
2021-01-13 18:02:56 +01:00
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<div class="outline-text-2" id="text-4">
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</div>
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2021-01-26 00:23:42 +01:00
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<div id="outline-container-org12ab3c5" class="outline-3">
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<h3 id="org12ab3c5"><span class="section-number-3">4.1</span> <span class="todo TODO">TODO</span> Hydrogen atom</h3>
|
2021-01-13 18:02:56 +01:00
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<div class="outline-text-3" id="text-4-1">
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</div>
|
2021-01-26 00:23:42 +01:00
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<div id="outline-container-org3b3e8ae" class="outline-4">
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<h4 id="org3b3e8ae"><span class="section-number-4">4.1.1</span> Exercise</h4>
|
2021-01-21 23:25:25 +01:00
|
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<div class="outline-text-4" id="text-4-1-1">
|
2021-01-13 18:02:56 +01:00
|
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<div class="exercise">
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<p>
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Modify the Metropolis VMC program to introduce the PDMC weight.
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|
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In the limit \(\tau \rightarrow 0\), you should recover the exact
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energy of H for any value of \(a\).
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</p>
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</div>
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<p>
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<b>Python</b>
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</p>
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<div class="org-src-container">
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<pre class="src src-python"><span style="color: #a020f0;">from</span> hydrogen <span style="color: #a020f0;">import</span> *
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<span style="color: #a020f0;">from</span> qmc_stats <span style="color: #a020f0;">import</span> *
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<span style="color: #a020f0;">def</span> <span style="color: #0000ff;">MonteCarlo</span>(a,tau,nmax,Eref):
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<span style="color: #a0522d;">E</span> = 0.
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<span style="color: #a0522d;">N</span> = 0.
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<span style="color: #a0522d;">accep_rate</span> = 0.
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<span style="color: #a0522d;">sq_tau</span> = np.sqrt(tau)
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<span style="color: #a0522d;">r_old</span> = np.random.normal(loc=0., scale=1.0, size=(3))
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|
<span style="color: #a0522d;">d_old</span> = drift(a,r_old)
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|
<span style="color: #a0522d;">d2_old</span> = np.dot(d_old,d_old)
|
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<span style="color: #a0522d;">psi_old</span> = psi(a,r_old)
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<span style="color: #a0522d;">w</span> = 1.0
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<span style="color: #a020f0;">for</span> istep <span style="color: #a020f0;">in</span> <span style="color: #483d8b;">range</span>(nmax):
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|
|
|
|
<span style="color: #a0522d;">chi</span> = np.random.normal(loc=0., scale=1.0, size=(3))
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<span style="color: #a0522d;">el</span> = e_loc(a,r_old)
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|
<span style="color: #a0522d;">w</span> *= np.exp(-tau*(el - Eref))
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<span style="color: #a0522d;">N</span> += w
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<span style="color: #a0522d;">E</span> += w * el
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<span style="color: #a0522d;">r_new</span> = r_old + tau * d_old + sq_tau * chi
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|
<span style="color: #a0522d;">d_new</span> = drift(a,r_new)
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|
<span style="color: #a0522d;">d2_new</span> = np.dot(d_new,d_new)
|
|
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|
|
<span style="color: #a0522d;">psi_new</span> = psi(a,r_new)
|
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|
|
# <span style="color: #b22222;">Metropolis</span>
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|
<span style="color: #a0522d;">prod</span> = np.dot((d_new + d_old), (r_new - r_old))
|
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|
|
<span style="color: #a0522d;">argexpo</span> = 0.5 * (d2_new - d2_old)*tau + prod
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|
<span style="color: #a0522d;">q</span> = psi_new / psi_old
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|
|
<span style="color: #a0522d;">q</span> = np.exp(-argexpo) * q*q
|
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|
|
# <span style="color: #b22222;">PDMC weight</span>
|
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|
|
<span style="color: #a020f0;">if</span> np.random.uniform() < q:
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|
|
<span style="color: #a0522d;">accep_rate</span> += w
|
|
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|
|
<span style="color: #a0522d;">r_old</span> = r_new
|
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|
|
<span style="color: #a0522d;">d_old</span> = d_new
|
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|
|
<span style="color: #a0522d;">d2_old</span> = d2_new
|
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|
|
<span style="color: #a0522d;">psi_old</span> = psi_new
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|
|
<span style="color: #a020f0;">return</span> E/N, accep_rate/N
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|
|
<span style="color: #a0522d;">a</span> = 0.9
|
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|
|
<span style="color: #a0522d;">nmax</span> = 10000
|
|
|
|
|
<span style="color: #a0522d;">tau</span> = .1
|
|
|
|
|
<span style="color: #a0522d;">X</span> = [MonteCarlo(a,tau,nmax,-0.5) <span style="color: #a020f0;">for</span> i <span style="color: #a020f0;">in</span> <span style="color: #483d8b;">range</span>(30)]
|
|
|
|
|
<span style="color: #a0522d;">E</span>, <span style="color: #a0522d;">deltaE</span> = ave_error([x[0] <span style="color: #a020f0;">for</span> x <span style="color: #a020f0;">in</span> X])
|
|
|
|
|
<span style="color: #a0522d;">A</span>, <span style="color: #a0522d;">deltaA</span> = ave_error([x[1] <span style="color: #a020f0;">for</span> x <span style="color: #a020f0;">in</span> X])
|
|
|
|
|
<span style="color: #a020f0;">print</span>(f<span style="color: #8b2252;">"E = {E} +/- {deltaE}\nA = {A} +/- {deltaA}"</span>)
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
|
|
|
|
|
<p>
|
|
|
|
|
<b>Fortran</b>
|
|
|
|
|
</p>
|
|
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-f90"><span style="color: #a020f0;">subroutine</span> <span style="color: #0000ff;">variational_montecarlo</span>(a,tau,nmax,energy,accep_rate)
|
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|
|
|
<span style="color: #a020f0;">implicit</span> <span style="color: #228b22;">none</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> a, tau</span>
|
|
|
|
|
<span style="color: #228b22;">integer</span>*8 , <span style="color: #a020f0;">intent</span>(in) ::<span style="color: #a0522d;"> nmax </span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">intent</span>(out) ::<span style="color: #a0522d;"> energy, accep_rate</span>
|
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|
|
|
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|
<span style="color: #228b22;">integer</span>*8 ::<span style="color: #a0522d;"> istep</span>
|
|
|
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|
<span style="color: #228b22;">double precision</span> ::<span style="color: #a0522d;"> norm, sq_tau, chi(3), d2_old, prod, u</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span> ::<span style="color: #a0522d;"> psi_old, psi_new, d2_new, argexpo, q</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span> ::<span style="color: #a0522d;"> r_old(3), r_new(3)</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span> ::<span style="color: #a0522d;"> d_old(3), d_new(3)</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">external</span> ::<span style="color: #a0522d;"> e_loc, psi</span>
|
|
|
|
|
|
|
|
|
|
sq_tau = dsqrt(tau)
|
|
|
|
|
|
|
|
|
|
! <span style="color: #b22222;">Initialization</span>
|
|
|
|
|
energy = 0.d0
|
|
|
|
|
norm = 0.d0
|
|
|
|
|
accep_rate = 0.d0
|
|
|
|
|
<span style="color: #a020f0;">call</span> <span style="color: #0000ff;">random_gauss</span>(r_old,3)
|
|
|
|
|
<span style="color: #a020f0;">call</span> <span style="color: #0000ff;">drift</span>(a,r_old,d_old)
|
|
|
|
|
d2_old = d_old(1)*d_old(1) + d_old(2)*d_old(2) + d_old(3)*d_old(3)
|
|
|
|
|
psi_old = psi(a,r_old)
|
|
|
|
|
|
|
|
|
|
<span style="color: #a020f0;">do</span> istep = 1,nmax
|
|
|
|
|
<span style="color: #a020f0;">call</span> <span style="color: #0000ff;">random_gauss</span>(chi,3)
|
|
|
|
|
r_new(:) = r_old(:) + tau * d_old(:) + chi(:)*sq_tau
|
|
|
|
|
<span style="color: #a020f0;">call</span> <span style="color: #0000ff;">drift</span>(a,r_new,d_new)
|
|
|
|
|
d2_new = d_new(1)*d_new(1) + d_new(2)*d_new(2) + d_new(3)*d_new(3)
|
|
|
|
|
psi_new = psi(a,r_new)
|
|
|
|
|
! <span style="color: #b22222;">Metropolis</span>
|
|
|
|
|
prod = (d_new(1) + d_old(1))*(r_new(1) - r_old(1)) + <span style="color: #a020f0;">&</span>
|
|
|
|
|
(d_new(2) + d_old(2))*(r_new(2) - r_old(2)) + <span style="color: #a020f0;">&</span>
|
|
|
|
|
(d_new(3) + d_old(3))*(r_new(3) - r_old(3))
|
|
|
|
|
argexpo = 0.5d0 * (d2_new - d2_old)*tau + prod
|
|
|
|
|
q = psi_new / psi_old
|
|
|
|
|
q = dexp(-argexpo) * q*q
|
|
|
|
|
<span style="color: #a020f0;">call</span> <span style="color: #0000ff;">random_number</span>(u)
|
|
|
|
|
<span style="color: #a020f0;">if</span> (u<q) <span style="color: #a020f0;">then</span>
|
|
|
|
|
accep_rate = accep_rate + 1.d0
|
|
|
|
|
r_old(:) = r_new(:)
|
|
|
|
|
d_old(:) = d_new(:)
|
|
|
|
|
d2_old = d2_new
|
|
|
|
|
psi_old = psi_new
|
|
|
|
|
<span style="color: #a020f0;">end if</span>
|
|
|
|
|
norm = norm + 1.d0
|
|
|
|
|
energy = energy + e_loc(a,r_old)
|
|
|
|
|
<span style="color: #a020f0;">end do</span>
|
|
|
|
|
energy = energy / norm
|
|
|
|
|
accep_rate = accep_rate / norm
|
|
|
|
|
<span style="color: #a020f0;">end subroutine</span> <span style="color: #0000ff;">variational_montecarlo</span>
|
|
|
|
|
|
|
|
|
|
<span style="color: #a020f0;">program</span> <span style="color: #0000ff;">qmc</span>
|
|
|
|
|
<span style="color: #a020f0;">implicit</span> <span style="color: #228b22;">none</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">parameter</span> ::<span style="color: #a0522d;"> a = 0.9</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span>, <span style="color: #a020f0;">parameter</span> ::<span style="color: #a0522d;"> tau = 1.0</span>
|
|
|
|
|
<span style="color: #228b22;">integer</span>*8 , <span style="color: #a020f0;">parameter</span> ::<span style="color: #a0522d;"> nmax = 100000</span>
|
|
|
|
|
<span style="color: #228b22;">integer</span> , <span style="color: #a020f0;">parameter</span> ::<span style="color: #a0522d;"> nruns = 30</span>
|
|
|
|
|
|
|
|
|
|
<span style="color: #228b22;">integer</span> ::<span style="color: #a0522d;"> irun</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span> ::<span style="color: #a0522d;"> X(nruns), accep(nruns)</span>
|
|
|
|
|
<span style="color: #228b22;">double precision</span> ::<span style="color: #a0522d;"> ave, err</span>
|
|
|
|
|
|
|
|
|
|
<span style="color: #a020f0;">do</span> irun=1,nruns
|
|
|
|
|
<span style="color: #a020f0;">call</span> <span style="color: #0000ff;">variational_montecarlo</span>(a,tau,nmax,X(irun),accep(irun))
|
|
|
|
|
<span style="color: #a020f0;">enddo</span>
|
|
|
|
|
<span style="color: #a020f0;">call</span> <span style="color: #0000ff;">ave_error</span>(X,nruns,ave,err)
|
|
|
|
|
<span style="color: #a020f0;">print</span> *, <span style="color: #8b2252;">'E = '</span>, ave, <span style="color: #8b2252;">'+/-'</span>, err
|
|
|
|
|
<span style="color: #a020f0;">call</span> <span style="color: #0000ff;">ave_error</span>(accep,nruns,ave,err)
|
|
|
|
|
<span style="color: #a020f0;">print</span> *, <span style="color: #8b2252;">'A = '</span>, ave, <span style="color: #8b2252;">'+/-'</span>, err
|
|
|
|
|
<span style="color: #a020f0;">end program</span> <span style="color: #0000ff;">qmc</span>
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
|
|
|
|
|
<div class="org-src-container">
|
|
|
|
|
<pre class="src src-sh">gfortran hydrogen.f90 qmc_stats.f90 vmc_metropolis.f90 -o vmc_metropolis
|
|
|
|
|
./vmc_metropolis
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
|
|
|
|
|
|
|
|
|
<pre class="example">
|
|
|
|
|
E = -0.49499990423528023 +/- 1.5958250761863871E-004
|
|
|
|
|
A = 0.78861366666666655 +/- 3.5096729498002445E-004
|
|
|
|
|
|
|
|
|
|
</pre>
|
|
|
|
|
</div>
|
2021-01-21 23:25:25 +01:00
|
|
|
</div>
|
2021-01-13 18:02:56 +01:00
|
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</div>
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2021-01-26 00:23:42 +01:00
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<div id="outline-container-orgf0f2402" class="outline-3">
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<h3 id="orgf0f2402"><span class="section-number-3">4.2</span> <span class="todo TODO">TODO</span> Dihydrogen</h3>
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2021-01-13 18:02:56 +01:00
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<div class="outline-text-3" id="text-4-2">
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<p>
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We will now consider the H<sub>2</sub> molecule in a minimal basis composed of the
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\(1s\) orbitals of the hydrogen atoms:
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</p>
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<p>
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\[
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\Psi(\mathbf{r}_1, \mathbf{r}_2) =
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\exp(-(\mathbf{r}_1 - \mathbf{R}_A)) +
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\]
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where \(\mathbf{r}_1\) and \(\mathbf{r}_2\) denote the electron
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coordinates and \(\mathbf{R}_A\) and \(\mathbf{R}_B\) the coordinates of
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the nuclei.
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</p>
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</div>
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</div>
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</div>
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2021-01-25 23:54:27 +01:00
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2021-01-26 00:23:42 +01:00
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<div id="outline-container-org1c017d7" class="outline-2">
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<h2 id="org1c017d7"><span class="section-number-2">5</span> <span class="todo TODO">TODO</span> <code>[0/1]</code> Last things to do</h2>
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2021-01-25 23:54:27 +01:00
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<div class="outline-text-2" id="text-5">
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<ul class="org-ul">
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<li class="off"><code>[ ]</code> Prepare 4 questions for the exam: multiple-choice questions
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with 4 possible answers. Questions should be independent because
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they will be asked in a random order.</li>
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<li class="off"><code>[ ]</code> Propose a project for the students to continue the
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programs. Idea: Modify the program to compute the exact energy of
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the H\(_2\) molecule at $R$=1.4010 bohr. Answer: 0.17406 a.u.</li>
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</ul>
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</div>
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</div>
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2021-01-13 18:02:56 +01:00
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</div>
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<div id="postamble" class="status">
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<p class="author">Author: Anthony Scemama, Claudia Filippi</p>
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2021-01-26 00:23:42 +01:00
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<p class="date">Created: 2021-01-25 Mon 23:23</p>
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2021-01-13 18:02:56 +01:00
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<p class="validation"><a href="http://validator.w3.org/check?uri=referer">Validate</a></p>
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</div>
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</body>
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</html>
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