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Merge pull request #35 from fmgjcoppens/fix/abs2fabs

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Fix/abs2fabs
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François Coppens 2021-05-19 15:27:43 +02:00 committed by GitHub
commit ab661ad785
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10 changed files with 426 additions and 380 deletions
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135
include/SM_Helpers.hpp
View File

@ -82,58 +82,107 @@ T1 *outProd(T1 *vec1, T2 *vec2, unsigned int M) {
return C;
}
template <typename T> T matDet(T **A, unsigned int M) {
int det = 0, p, h, k, i, j;
T **temp = new T *[M];
for (int i = 0; i < M; i++)
temp[i] = new T[M];
if (M == 1) {
return A[0][0];
} else if (M == 2) {
det = (A[0][0] * A[1][1] - A[0][1] * A[1][0]);
return det;
} else {
for (p = 0; p < M; p++) {
h = 0;
k = 0;
for (i = 1; i < M; i++) {
for (j = 0; j < M; j++) {
if (j == p) {
continue;
}
temp[h][k] = A[i][j];
k++;
if (k == M - 1) {
h++;
k = 0;
}
}
}
det = det + A[0][p] * pow(-1, p) * matDet(temp, M - 1);
}
return det;
}
delete[] temp;
}
// // This flat version doesn't work. Get's stuck in an infinite recursion loop.
// template <typename T> T determinant(T *A, unsigned int M) {
// std::cout << "determinant() called..." << std::endl;
// T det = 0;
// int p, h, k, i, j;
// T *temp = new T[M * M];
// if (M == 1) {
// return A[0];
// } else if (M == 2) {
// det = (A[0] * A[3] - A[1] * A[2]);
// return det;
// } else {
// for (p = 0; p < M; p++) {
// h = 0;
// k = 0;
// for (i = 1; i < M; i++) {
// for (j = 0; j < M; j++) {
// if (j == p) {
// continue;
// }
// temp[h * M + k] = A[i * M + j];
// k++;
// if (k == M - 1) {
// h++;
// k = 0;
// }
// }
// }
// det = det + A[p] * pow(-1, p) * determinant(temp, M - 1);
// }
// return det;
// }
// delete temp;
// }
// // This version also gets stuck in a recursion loop
// template <typename T> T determinant(T **A, unsigned int M) {
// int p, h, k, i, j;
// T det = 0;
// T **temp = new T *[M];
// for (int i = 0; i < M; i++) {
// temp[i] = new T[M];
// }
// if (M == 1) {
// return A[0][0];
// } else if (M == 2) {
// det = (A[0][0] * A[1][1] - A[0][1] * A[1][0]);
// return det;
// } else {
// for (p = 0; p < M; p++) {
// h = 0;
// k = 0;
// for (i = 1; i < M; i++) {
// for (j = 0; j < M; j++) {
// if (j == p) {
// continue;
// }
// temp[h][k] = A[i][j];
// k++;
// if (k == M - 1) {
// h++;
// k = 0;
// }
// }
// }
// det = det + A[0][p] * pow(-1, p) * determinant(temp, M - 1);
// }
// return det;
// }
// delete[] temp;
// }
template <typename T> bool is_identity(T *A, unsigned int M, double tolerance) {
for (unsigned int i = 0; i < M; i++) {
for (unsigned int j = 0; j < M; j++) {
if (i == j && fabs(A[i * M + j] - 1) > tolerance)
if (i == j && std::fabs(A[i * M + j] - 1) > tolerance) {
return false;
if (i != j && fabs(A[i * M + j]) > tolerance)
}
if (i != j && std::fabs(A[i * M + j]) > tolerance) {
return false;
}
}
}
return true;
}
template <typename T> T norm_max(T * A, unsigned int Dim) {
template <typename T>
bool is_identity2(T *A, unsigned int M, double tolerance) {
double det = determinant(A, M);
if (det - 1 > tolerance) {
return false;
}
return true;
}
template <typename T> T norm_max(T *A, unsigned int Dim) {
T res = 0;
for (unsigned int i = 0; i < Dim; i++) {
for (unsigned int j = 0; j < Dim; j++) {
T delta = A[i * Dim + j];
delta = fabs(delta);
delta = std::fabs(delta);
if (delta > res) {
res = delta;
}
@ -142,23 +191,23 @@ template <typename T> T norm_max(T * A, unsigned int Dim) {
return res;
}
template <typename T> T norm_frobenius2(T * A, unsigned int Dim) {
template <typename T> T norm_frobenius2(T *A, unsigned int Dim) {
T res = 0;
for (unsigned int i = 0; i < Dim; i++) {
for (unsigned int j = 0; j < Dim; j++) {
T delta = A[i * Dim + j];
res += delta*delta;
res += delta * delta;
}
}
return res;
}
template <typename T> T residual_max(T * A, unsigned int Dim) {
template <typename T> T residual_max(T *A, unsigned int Dim) {
T res = 0;
for (unsigned int i = 0; i < Dim; i++) {
for (unsigned int j = 0; j < Dim; j++) {
T delta = A[i * Dim + j] - (i == j);
delta = fabs(delta);
delta = std::fabs(delta);
if (delta > res) {
res = delta;
}
@ -167,12 +216,12 @@ template <typename T> T residual_max(T * A, unsigned int Dim) {
return res;
}
template <typename T> T residual_frobenius2(T * A, unsigned int Dim) {
template <typename T> T residual_frobenius2(T *A, unsigned int Dim) {
T res = 0;
for (unsigned int i = 0; i < Dim; i++) {
for (unsigned int j = 0; j < Dim; j++) {
T delta = A[i * Dim + j] - (i == j);
res += delta*delta;
res += delta * delta;
}
}
return res;

6
include/vfc_hashmap.h
View File

@ -87,7 +87,7 @@ void vfc_hashmap_destroy(vfc_hashmap_t map) {
// allocate and initialize the map
vfc_hashmap_t vfc_hashmap_create() {
vfc_hashmap_t map = (vfc_hashmap_t) calloc(1, sizeof(struct vfc_hashmap_st));
vfc_hashmap_t map = (vfc_hashmap_t)calloc(1, sizeof(struct vfc_hashmap_st));
if (map == NULL) {
return NULL;
@ -96,7 +96,7 @@ vfc_hashmap_t vfc_hashmap_create() {
map->capacity = (size_t)(1 << map->nbits);
map->mask = map->capacity - 1;
// an item is now a value and a key
map->items = (size_t *) calloc(map->capacity, 2 * sizeof(size_t));
map->items = (size_t *)calloc(map->capacity, 2 * sizeof(size_t));
if (map->items == NULL) {
vfc_hashmap_destroy(map);
return NULL;
@ -160,7 +160,7 @@ static void maybe_rehash_map(vfc_hashmap_t map) {
map->nbits++;
map->capacity = (size_t)(1 << map->nbits);
map->mask = map->capacity - 1;
map->items = (size_t *) calloc(map->capacity, 2 * sizeof(size_t));
map->items = (size_t *)calloc(map->capacity, 2 * sizeof(size_t));
map->nitems = 0;
map->n_deleted_items = 0;
for (ii = 0; ii < old_capacity; ii++) {

185
include/vfc_probe.h
View File

@ -1,37 +1,33 @@
/*
* This file defines "vfc_probes", a hashtable-based structure which can be used
* to place "probes" in a code and store the different values of test variables.
* These test results can then be exported in a CSV file, and used to generate a
* Verificarlo test report.
*/
* This file defines "vfc_probes", a hashtable-based structure which can be used
* to place "probes" in a code and store the different values of test variables.
* These test results can then be exported in a CSV file, and used to generate a
* Verificarlo test report.
*/
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
#include <stdio.h>
#include "vfc_hashmap.h"
#define VAR_NAME(var) #var // Simply returns the name of var into a string
/*
* A probe containing a double value as well as its key, which is needed when
* dumping the probes
*/
* A probe containing a double value as well as its key, which is needed when
* dumping the probes
*/
struct vfc_probe_node {
char * key;
char *key;
double value;
};
typedef struct vfc_probe_node vfc_probe_node;
/*
* The probes structure. It simply acts as a wrapper for a Verificarlo hashmap.
*/
* The probes structure. It simply acts as a wrapper for a Verificarlo hashmap.
*/
struct vfc_probes {
vfc_hashmap_t map;
@ -39,10 +35,9 @@ struct vfc_probes {
typedef struct vfc_probes vfc_probes;
/*
* Initialize an empty vfc_probes instance
*/
* Initialize an empty vfc_probes instance
*/
vfc_probes vfc_init_probes() {
vfc_probes probes;
@ -51,20 +46,18 @@ vfc_probes vfc_init_probes() {
return probes;
}
/*
* Free all probes
*/
* Free all probes
*/
void vfc_free_probes(vfc_probes * probes) {
void vfc_free_probes(vfc_probes *probes) {
// Before freeing the map, iterate manually over all items to free the keys
vfc_probe_node * probe = NULL;
for(int i = 0; i < probes->map->capacity; i++) {
probe = (vfc_probe_node*) get_value_at(probes->map->items, i);
if(probe != NULL) {
if(probe->key != NULL) {
vfc_probe_node *probe = NULL;
for (int i = 0; i < probes->map->capacity; i++) {
probe = (vfc_probe_node *)get_value_at(probes->map->items, i);
if (probe != NULL) {
if (probe->key != NULL) {
free(probe->key);
}
}
@ -73,14 +66,12 @@ void vfc_free_probes(vfc_probes * probes) {
vfc_hashmap_free(probes->map);
}
/*
* Helper function to generate the key from test and variable name
*/
* Helper function to generate the key from test and variable name
*/
char * gen_probe_key(char * testName, char * varName) {
char * key = (char *) malloc(strlen(testName) + strlen(varName) + 2);
char *gen_probe_key(char *testName, char *varName) {
char *key = (char *)malloc(strlen(testName) + strlen(varName) + 2);
strcpy(key, testName);
strcat(key, ",");
strcat(key, varName);
@ -88,42 +79,33 @@ char * gen_probe_key(char * testName, char * varName) {
return key;
}
/*
* Helper function to detect forbidden character ',' in the keys
*/
* Helper function to detect forbidden character ',' in the keys
*/
void validate_probe_key(char * str) {
void validate_probe_key(char *str) {
unsigned int len = strlen(str);
for(unsigned int i=0; i<len; i++) {
if(str[i] == ',') {
fprintf(
stderr,
for (unsigned int i = 0; i < len; i++) {
if (str[i] == ',') {
fprintf(stderr,
"Error [verificarlo]: One of your probes has a ',' in its test \
or variable name (\"%s\"), which is forbidden\n",
str
);
str);
exit(1);
}
}
}
/*
* Add a new probe. If an issue with the key is detected (forbidden characters or
* a duplicate key), an error will be thrown.
*/
* Add a new probe. If an issue with the key is detected (forbidden characters
* or a duplicate key), an error will be thrown.
*/
int vfc_put_probe(
vfc_probes * probes,
char * testName, char * varName,
double val
) {
int vfc_put_probe(vfc_probes *probes, char *testName, char *varName,
double val) {
if(probes == NULL) {
if (probes == NULL) {
return 1;
}
@ -133,100 +115,85 @@ int vfc_put_probe(
validate_probe_key(varName);
// Get the key, which is : testName + "," + varName
char * key = gen_probe_key(testName, varName);
char *key = gen_probe_key(testName, varName);
// Look for a duplicate key
vfc_probe_node * oldProbe = (vfc_probe_node*) vfc_hashmap_get(
probes->map, vfc_hashmap_str_function(key)
);
vfc_probe_node *oldProbe = (vfc_probe_node *)vfc_hashmap_get(
probes->map, vfc_hashmap_str_function(key));
if(oldProbe != NULL) {
if(strcmp(key, oldProbe->key) == 0) {
fprintf(
stderr,
if (oldProbe != NULL) {
if (strcmp(key, oldProbe->key) == 0) {
fprintf(stderr,
"Error [verificarlo]: you have a duplicate error with one of \
your probes (\"%s\"). Please make sure to use different names.\n",
key
);
key);
exit(1);
}
}
// Insert the element in the hashmap
vfc_probe_node * newProbe = (vfc_probe_node*) malloc(sizeof(vfc_probe_node));
vfc_probe_node *newProbe = (vfc_probe_node *)malloc(sizeof(vfc_probe_node));
newProbe->key = key;
newProbe->value = val;
vfc_hashmap_insert(
probes->map, vfc_hashmap_str_function(key), newProbe
);
vfc_hashmap_insert(probes->map, vfc_hashmap_str_function(key), newProbe);
return 0;
}
/*
* Remove (free) an element from the hash table
*/
* Remove (free) an element from the hash table
*/
int vfc_remove_probe(vfc_probes * probes, char * testName, char * varName) {
int vfc_remove_probe(vfc_probes *probes, char *testName, char *varName) {
if(probes == NULL) {
if (probes == NULL) {
return 1;
}
// Get the key, which is : testName + "," + varName
char * key = gen_probe_key(testName, varName);
char *key = gen_probe_key(testName, varName);
vfc_hashmap_remove(probes->map, vfc_hashmap_str_function(key));
return 0;
}
/*
* Return the number of probes stored in the hashmap
*/
* Return the number of probes stored in the hashmap
*/
unsigned int vfc_num_probes(vfc_probes * probes) {
unsigned int vfc_num_probes(vfc_probes *probes) {
return vfc_hashmap_num_items(probes->map);
}
/*
* Dump probes in a .csv file (the double values are converted to hex), then
* free it.
*/
* Dump probes in a .csv file (the double values are converted to hex), then
* free it.
*/
int vfc_dump_probes(vfc_probes * probes) {
int vfc_dump_probes(vfc_probes *probes) {
if(probes == NULL) {
if (probes == NULL) {
return 1;
}
// Get export path from the VFC_PROBES_OUTPUT env variable
char* exportPath = getenv("VFC_PROBES_OUTPUT");
if(!exportPath) {
printf(
"Warning [verificarlo]: VFC_PROBES_OUTPUT is not set, probes will \
not be dumped\n"
);
char *exportPath = getenv("VFC_PROBES_OUTPUT");
if (!exportPath) {
printf("Warning [verificarlo]: VFC_PROBES_OUTPUT is not set, probes will \
not be dumped\n");
vfc_free_probes(probes);
return 0;
}
FILE * fp = fopen(exportPath, "w");
FILE *fp = fopen(exportPath, "w");
if(fp == NULL) {
fprintf(
stderr,
if (fp == NULL) {
fprintf(stderr,
"Error [verificarlo]: impossible to open the CSV file to save your \
probes (\"%s\")\n",
exportPath
);
exportPath);
exit(1);
}
@ -234,15 +201,11 @@ int vfc_dump_probes(vfc_probes * probes) {
fprintf(fp, "test,variable,value\n");
// Iterate over all table elements
vfc_probe_node * probe = NULL;
for(int i = 0; i < probes->map->capacity; i++) {
probe = (vfc_probe_node*) get_value_at(probes->map->items, i);
if(probe != NULL) {
fprintf(
fp, "%s,%a\n",
probe->key,
probe->value
);
vfc_probe_node *probe = NULL;
for (int i = 0; i < probes->map->capacity; i++) {
probe = (vfc_probe_node *)get_value_at(probes->map->items, i);
if (probe != NULL) {
fprintf(fp, "%s,%a\n", probe->key, probe->value);
}
}

4
src/SM_Helpers.cpp
View File

@ -25,10 +25,10 @@ void selectLargestDenominator(unsigned int l, unsigned int N_updates,
for (unsigned int j = lbar; j < N_updates + 1; j++) {
index = p[j];
component = Updates_index[index - 1];
breakdown = abs(1 + ylk[l][index][component]);
breakdown = std::fabs(1 + ylk[l][index][component]);
#ifdef DEBUG
std::cout << "Inside selectLargestDenominator()" << std::endl;
std::cout << "breakdown = abs(1 + ylk[" << l << "][" << index << "]["
std::cout << "breakdown = fabs(1 + ylk[" << l << "][" << index << "]["
<< component << "]) = " << breakdown << std::endl;
std::cout << std::endl;
#endif

19
src/SM_Maponi.cpp
View File

@ -76,7 +76,7 @@ void MaponiA3(double *Slater_inv, unsigned int Dim, unsigned int N_updates,
<< "] = " << beta << std::endl;
std::cerr << std::endl;
#endif
if (fabs(beta) < threshold()) {
if (std::fabs(beta) < threshold()) {
std::cerr << "Breakdown condition triggered at " << Updates_index[l]
<< std::endl;
}
@ -184,7 +184,7 @@ void MaponiA3S(double *Slater_inv, unsigned int Dim, unsigned int N_updates,
}
}
#ifdef DEBUG
showVector(ylk[0][k], Dim+1, "");
showVector(ylk[0][k], Dim + 1, "");
#endif
}
@ -208,7 +208,7 @@ void MaponiA3S(double *Slater_inv, unsigned int Dim, unsigned int N_updates,
<< "] = " << beta << std::endl;
std::cerr << std::endl;
#endif
if (fabs(beta) < threshold()) {
if (std::fabs(beta) < threshold()) {
std::cerr << "Breakdown condition triggered at " << Updates_index[l]
<< std::endl;
for (unsigned int i = 1; i < Dim + 1; i++) {
@ -237,7 +237,10 @@ void MaponiA3S(double *Slater_inv, unsigned int Dim, unsigned int N_updates,
(i == j) - (j == component - 1) * ylk[l][p[l + 1]][i + 1] * ibeta;
}
}
matMul(Al, last, next, Dim); tmp = next; next = last; last = tmp;
matMul(Al, last, next, Dim);
tmp = next;
next = last;
last = tmp;
#ifdef DEBUG
showMatrix(last, Dim, "last");
#endif
@ -275,17 +278,17 @@ void MaponiA3S(double *Slater_inv, unsigned int Dim, unsigned int N_updates,
}
extern "C" {
void MaponiA3_f(double **linSlater_inv, unsigned int *Dim,
void MaponiA3_f(double **linSlater_inv, unsigned int *Dim,
unsigned int *N_updates, double **linUpdates,
unsigned int **Updates_index) {
MaponiA3(*linSlater_inv, *Dim, *N_updates, *linUpdates, *Updates_index);
}
}
}
extern "C" {
void MaponiA3S_f(double **linSlater_inv, unsigned int *Dim,
void MaponiA3S_f(double **linSlater_inv, unsigned int *Dim,
unsigned int *N_updates, double **linUpdates,
unsigned int **Updates_index) {
MaponiA3S(*linSlater_inv, *Dim, *N_updates, *linUpdates, *Updates_index);
}
}
}

51
src/SM_Standard.cpp
View File

@ -23,7 +23,7 @@ void SM1(double *Slater_inv, unsigned int Dim, unsigned int N_updates,
// Denominator
double den = 1 + C[Updates_index[l] - 1];
if (fabs(den) < threshold()) {
if (std::fabs(den) < threshold()) {
std::cerr << "Breakdown condition triggered at " << Updates_index[l]
<< std::endl;
}
@ -71,7 +71,7 @@ void SM2(double *Slater_inv, unsigned int Dim, unsigned int N_updates,
// Denominator
double den = 1 + C[Updates_index[l] - 1];
if (fabs(den) < threshold()) {
if (std::fabs(den) < threshold()) {
std::cerr << "Breakdown condition triggered at " << Updates_index[l]
<< std::endl;
@ -131,7 +131,7 @@ void SM3(double *Slater_inv, unsigned int Dim, unsigned int N_updates,
// Denominator
double den = 1 + C[Updates_index[l] - 1];
if (fabs(den) < threshold()) {
if (std::fabs(den) < threshold()) {
std::cerr << "Breakdown condition triggered at " << Updates_index[l]
<< std::endl;
@ -173,7 +173,8 @@ void SM3(double *Slater_inv, unsigned int Dim, unsigned int N_updates,
}
// Sherman Morrison, mix between SM3 + SM2
// Leave zero denominators for later (SM3), and when none are left then split (SM2)
// Leave zero denominators for later (SM3), and when none are left then split
// (SM2)
void SM4(double *Slater_inv, unsigned int Dim, unsigned int N_updates,
double *Updates, unsigned int *Updates_index) {
std::cerr << "Called SM4 with " << N_updates << " updates" << std::endl;
@ -197,7 +198,7 @@ void SM4(double *Slater_inv, unsigned int Dim, unsigned int N_updates,
// Denominator
double den = 1 + C[Updates_index[l] - 1];
if (fabs(den) < threshold()) {
if (std::fabs(den) < threshold()) {
std::cerr << "Breakdown condition triggered at " << Updates_index[l]
<< std::endl;
@ -237,27 +238,23 @@ void SM4(double *Slater_inv, unsigned int Dim, unsigned int N_updates,
}
extern "C" {
void SM1_f(double **linSlater_inv, unsigned int *Dim,
unsigned int *N_updates, double **linUpdates,
unsigned int **Updates_index) {
void SM1_f(double **linSlater_inv, unsigned int *Dim, unsigned int *N_updates,
double **linUpdates, unsigned int **Updates_index) {
SM1(*linSlater_inv, *Dim, *N_updates, *linUpdates, *Updates_index);
}
void SM2_f(double **linSlater_inv, unsigned int *Dim,
unsigned int *N_updates, double **linUpdates,
unsigned int **Updates_index) {
SM2(*linSlater_inv, *Dim, *N_updates, *linUpdates, *Updates_index);
}
void SM3_f(double **linSlater_inv, unsigned int *Dim,
unsigned int *N_updates, double **linUpdates,
unsigned int **Updates_index) {
SM3(*linSlater_inv, *Dim, *N_updates, *linUpdates, *Updates_index);
}
void SM4_f(double **linSlater_inv, unsigned int *Dim,
unsigned int *N_updates, double **linUpdates,
unsigned int **Updates_index) {
SM4(*linSlater_inv, *Dim, *N_updates, *linUpdates, *Updates_index);
}
}
void SM2_f(double **linSlater_inv, unsigned int *Dim, unsigned int *N_updates,
double **linUpdates, unsigned int **Updates_index) {
SM2(*linSlater_inv, *Dim, *N_updates, *linUpdates, *Updates_index);
}
void SM3_f(double **linSlater_inv, unsigned int *Dim, unsigned int *N_updates,
double **linUpdates, unsigned int **Updates_index) {
SM3(*linSlater_inv, *Dim, *N_updates, *linUpdates, *Updates_index);
}
void SM4_f(double **linSlater_inv, unsigned int *Dim, unsigned int *N_updates,
double **linUpdates, unsigned int **Updates_index) {
SM4(*linSlater_inv, *Dim, *N_updates, *linUpdates, *Updates_index);
}
}

42
tests/cMaponiA3_test_3x3_3.cpp
View File

@ -1,6 +1,6 @@
// main.cpp
#include "SM_Maponi.hpp"
#include "SM_Helpers.hpp"
#include "SM_Maponi.hpp"
int main() {
@ -9,24 +9,31 @@ int main() {
// Declare, allocate all vectors and matrices and fill them with zeros
unsigned int *Ar_index = new unsigned int[M];
double *A = new double[M*M]; // The matrix to be inverted
double *A0 = new double[M*M]; // A diagonal matrix with the digonal elements of A
double *Ar = new double[M*M]; // The update matrix
double *A0_inv = new double[M*M]; // The inverse
double *A = new double[M * M]; // The matrix to be inverted
double *A0 =
new double[M * M]; // A diagonal matrix with the digonal elements of A
double *Ar = new double[M * M]; // The update matrix
double *A0_inv = new double[M * M]; // The inverse
// Fill with zeros
for (i = 0; i < M; i++) {
for (j = 0; j < M; j++) {
A0[i*M+j] = 0;
Ar[i*M+j] = 0;
A0_inv[i*M+j] = 0;
A0[i * M + j] = 0;
Ar[i * M + j] = 0;
A0_inv[i * M + j] = 0;
}
}
// Initialize A with M=3 and fill acc. to Eq. (17) from paper
A[0] = 1; A[3] = 1; A[6] = -1;
A[1] = 1; A[4] = 1; A[7] = 0;
A[2] = -1; A[5] = 0; A[8] = -1;
A[0] = 1;
A[3] = 1;
A[6] = -1;
A[1] = 1;
A[4] = 1;
A[7] = 0;
A[2] = -1;
A[5] = 0;
A[8] = -1;
showMatrix(A, M, "A");
@ -34,20 +41,21 @@ int main() {
// the inverse of A0_inv of diagonal matrix A0_inv
// and the update matrix Ar
for (i = 0; i < M; i++) {
A0[i*M + i] = A[i*M + i];
A0_inv[i*M + i] = 1.0/A[i*M + i];
Ar_index[i] = i+1; // ! First column needs to start with 1 !
A0[i * M + i] = A[i * M + i];
A0_inv[i * M + i] = 1.0 / A[i * M + i];
Ar_index[i] = i + 1; // ! First column needs to start with 1 !
for (j = 0; j < M; j++) {
Ar[i*M + j] = A[i*M + j] - A0[i*M + j];
Ar[i * M + j] = A[i * M + j] - A0[i * M + j];
}
}
// Define pointers dim and n_updates to use in Sherman-Morrison(...) function call
// Define pointers dim and n_updates to use in Sherman-Morrison(...) function
// call
MaponiA3(A0_inv, M, M, Ar, Ar_index);
showMatrix(A0_inv, M, "A0_inv");
// Deallocate all vectors and matrices
delete [] A, A0, A0_inv, Ar, Ar_index;
delete[] A, A0, A0_inv, Ar, Ar_index;
return 0;
}

61
tests/test_h5.cpp
View File

@ -1,22 +1,22 @@
#include "hdf5/serial/hdf5.h"
#include "hdf5/serial/H5Cpp.h"
#include "hdf5/serial/hdf5.h"
#include "SM_Helpers.hpp"
#include "SM_Maponi.hpp"
#include "SM_Standard.hpp"
#include "SM_Helpers.hpp"
using namespace H5;
// #define DEBUG
const H5std_string FILE_NAME( "dataset.hdf5" );
const H5std_string FILE_NAME("dataset.hdf5");
void read_int(H5File file, std::string key, unsigned int * data) {
void read_int(H5File file, std::string key, unsigned int *data) {
DataSet ds = file.openDataSet(key);
ds.read(data, PredType::STD_U32LE);
ds.close();
}
void read_double(H5File file, std::string key, double * data) {
void read_double(H5File file, std::string key, double *data) {
DataSet ds = file.openDataSet(key);
ds.read(data, PredType::IEEE_F64LE);
ds.close();
@ -32,19 +32,19 @@ int test_cycle(H5File file, int cycle, std::string version, double tolerance) {
read_int(file, group + "/slater_matrix_dim", &dim);
read_int(file, group + "/nupdates", &nupdates);
double * slater_matrix = new double[dim*dim];
double *slater_matrix = new double[dim * dim];
read_double(file, group + "/slater_matrix", slater_matrix);
double * slater_inverse = new double[dim*dim];
double *slater_inverse = new double[dim * dim];
read_double(file, group + "/slater_inverse", slater_inverse);
unsigned int * col_update_index = new unsigned int[nupdates];
unsigned int *col_update_index = new unsigned int[nupdates];
read_int(file, group + "/col_update_index", col_update_index);
double * updates = new double[nupdates*dim];
double *updates = new double[nupdates * dim];
read_double(file, group + "/updates", updates);
double * u = new double[nupdates*dim];
double *u = new double[nupdates * dim];
/* Test */
#ifdef DEBUG
@ -55,8 +55,9 @@ int test_cycle(H5File file, int cycle, std::string version, double tolerance) {
for (j = 0; j < nupdates; j++) {
for (i = 0; i < dim; i++) {
col = col_update_index[j];
u[i + j*dim] = updates[i + j*dim] - slater_matrix[i*dim + (col - 1)];
slater_matrix[i*dim + (col - 1)] = updates[i + j*dim];
u[i + j * dim] =
updates[i + j * dim] - slater_matrix[i * dim + (col - 1)];
slater_matrix[i * dim + (col - 1)] = updates[i + j * dim];
}
}
@ -93,20 +94,33 @@ int test_cycle(H5File file, int cycle, std::string version, double tolerance) {
showMatrix(slater_inverse, dim, "NEW Inverse");
#endif
double * res = new double[dim*dim] {0};
double *res = new double[dim * dim]{0};
matMul(slater_matrix, slater_inverse, res, dim);
bool ok = is_identity(res, dim, tolerance);
double res_max = residual_max(res, dim);
double res2 = residual_frobenius2(res, dim);
std::cout << "Residual = " << version << " " << cycle << " " << res_max << " " << res2 << std::endl;
// double det;
// double **tmp = new double *[dim];
// for (int i = 0; i < dim; i++) {
// tmp[i] = new double[dim];
// for (int j = 0; j < dim; j++) {
// tmp[i][j] = res[i * dim + j];
// }
// }
// det = determinant(tmp, dim);
// delete[] tmp;
// std::cout << "Residual = " << version << " " << cycle << " " << res_max <<
// " "
// << res2 << " " << det << std::endl;
std::cout << "Residual = " << version << " " << cycle << " " << res_max << " "
<< res2 << std::endl;
#ifdef DEBUG
showMatrix(res, dim, "Result");
#endif
delete [] res, updates, u, col_update_index,
slater_matrix, slater_inverse;
delete[] res, updates, u, col_update_index, slater_matrix, slater_inverse;
return ok;
}
@ -114,7 +128,9 @@ int test_cycle(H5File file, int cycle, std::string version, double tolerance) {
int main(int argc, char **argv) {
if (argc != 5) {
std::cerr << "Execute from within 'datasets/'" << std::endl;
std::cerr << "usage: test_h5 <version> <start cycle> <stop cycle> <tolerance>" << std::endl;
std::cerr
<< "usage: test_h5 <version> <start cycle> <stop cycle> <tolerance>"
<< std::endl;
return 1;
}
std::string version(argv[1]);
@ -124,15 +140,12 @@ int main(int argc, char **argv) {
H5File file(FILE_NAME, H5F_ACC_RDONLY);
bool ok;
for (int cycle = start_cycle; cycle < stop_cycle+1; cycle++) {
for (int cycle = start_cycle; cycle < stop_cycle + 1; cycle++) {
ok = test_cycle(file, cycle, version, tolerance);
if (ok) {
std::cerr << "ok -- cycle " << std::to_string(cycle)
<< std::endl;
}
else {
std::cerr << "failed -- cycle " << std::to_string(cycle)
<< std::endl;
std::cerr << "ok -- cycle " << std::to_string(cycle) << std::endl;
} else {
std::cerr << "failed -- cycle " << std::to_string(cycle) << std::endl;
}
}

60
tests/vfc_test_h5.cpp
View File

@ -3,31 +3,30 @@
// cycles in a CSV file, instead of accepting a start and an end cycle (which
// makes it easier to select the exact cycles we are interested in with vfc_ci).
#include <hdf5/serial/hdf5.h>
#include <hdf5/serial/H5Cpp.h>
#include <hdf5/serial/hdf5.h>
#include <vector>
#include <fstream>
#include <sstream>
#include <vector>
#include "SM_Helpers.hpp"
#include "SM_Maponi.hpp"
#include "SM_Standard.hpp"
#include "SM_Helpers.hpp"
#include "vfc_probe.h"
using namespace H5;
// #define DEBUG
const H5std_string FILE_NAME( "datasets/ci_dataset.hdf5" );
const H5std_string FILE_NAME("datasets/ci_dataset.hdf5");
void read_int(H5File file, std::string key, unsigned int * data) {
void read_int(H5File file, std::string key, unsigned int *data) {
DataSet ds = file.openDataSet(key);
ds.read(data, PredType::STD_U32LE);
ds.close();
}
void read_double(H5File file, std::string key, double * data) {
void read_double(H5File file, std::string key, double *data) {
DataSet ds = file.openDataSet(key);
ds.read(data, PredType::IEEE_F64LE);
ds.close();
@ -42,14 +41,15 @@ std::vector<int> get_cycles_list(std::string path) {
std::string cycle_str;
std::vector<int> cycles_list = {};
while(string_stream >> cycle_str) {
while (string_stream >> cycle_str) {
cycles_list.push_back(std::stoi(cycle_str));
}
return cycles_list;
}
int test_cycle(H5File file, int cycle, std::string version, vfc_probes * probes) {
int test_cycle(H5File file, int cycle, std::string version,
vfc_probes *probes) {
/* Read the data */
@ -59,11 +59,12 @@ int test_cycle(H5File file, int cycle, std::string version, vfc_probes * probes)
// being zero-padded. This is used when calling vfc_put_probe later on.
std::string zero_padded_group = std::to_string(cycle);
zero_padded_group = "cycle_" +
std::string(5 - zero_padded_group.length(), '0') + zero_padded_group;
std::string(5 - zero_padded_group.length(), '0') +
zero_padded_group;
try{
try {
file.openGroup(group);
} catch(H5::Exception& e){
} catch (H5::Exception &e) {
std::cerr << "group " << group << "not found" << std::endl;
return 0;
}
@ -72,21 +73,20 @@ int test_cycle(H5File file, int cycle, std::string version, vfc_probes * probes)
read_int(file, group + "/slater_matrix_dim", &dim);
read_int(file, group + "/nupdates", &nupdates);
double * slater_matrix = new double[dim*dim];
double *slater_matrix = new double[dim * dim];
read_double(file, group + "/slater_matrix", slater_matrix);
double * slater_inverse = new double[dim*dim];
double *slater_inverse = new double[dim * dim];
read_double(file, group + "/slater_inverse", slater_inverse);
//slater_inverse = transpose(slater_inverse, dim);
// slater_inverse = transpose(slater_inverse, dim);
unsigned int * col_update_index = new unsigned int[nupdates];
unsigned int *col_update_index = new unsigned int[nupdates];
read_int(file, group + "/col_update_index", col_update_index);
double * updates = new double[nupdates*dim];
double *updates = new double[nupdates * dim];
read_double(file, group + "/updates", updates);
double * u = new double[nupdates*dim];
double *u = new double[nupdates * dim];
/* Test */
#ifdef DEBUG
@ -100,8 +100,9 @@ int test_cycle(H5File file, int cycle, std::string version, vfc_probes * probes)
for (j = 0; j < nupdates; j++) {
for (i = 0; i < dim; i++) {
col = col_update_index[j];
u[i + j*dim] = updates[i + j*dim] - slater_matrix[i*dim + (col - 1)];
slater_matrix[i*dim + (col - 1)] = updates[i + j*dim];
u[i + j * dim] =
updates[i + j * dim] - slater_matrix[i * dim + (col - 1)];
slater_matrix[i * dim + (col - 1)] = updates[i + j * dim];
}
}
@ -128,7 +129,7 @@ int test_cycle(H5File file, int cycle, std::string version, vfc_probes * probes)
showMatrix(slater_inverse, dim, "NEW Inverse");
#endif
double * res = new double[dim*dim] {0};
double *res = new double[dim * dim]{0};
matMul(slater_matrix, slater_inverse, res, dim);
bool ok = is_identity(res, dim, 1e-3);
@ -139,11 +140,11 @@ int test_cycle(H5File file, int cycle, std::string version, vfc_probes * probes)
showMatrix(res, dim, "Result");
#endif
vfc_put_probe(probes, &(zero_padded_group)[0], &("res_max_" + version)[0], res_max);
vfc_put_probe(probes, &(zero_padded_group)[0], &("res_max_" + version)[0],
res_max);
vfc_put_probe(probes, &(zero_padded_group)[0], &("res2_" + version)[0], res2);
delete [] res, updates, u, col_update_index,
slater_matrix, slater_inverse;
delete[] res, updates, u, col_update_index, slater_matrix, slater_inverse;
return ok;
}
@ -165,12 +166,9 @@ int main(int argc, char **argv) {
for (int i = 0; i < cycles_list.size(); i++) {
ok = test_cycle(file, cycles_list[i], version, &probes);
if (ok) {
std::cout << "ok -- cycle " << std::to_string(i)
<< std::endl;
}
else {
std::cerr << "failed -- cycle " << std::to_string(i)
<< std::endl;
std::cout << "ok -- cycle " << std::to_string(i) << std::endl;
} else {
std::cerr << "failed -- cycle " << std::to_string(i) << std::endl;
}
}

15
tools/restyle.sh Executable file
View File

@ -0,0 +1,15 @@
#!/usr/bin/env bash
STYLE='--style=LLVM'
FORMATER='clang-format -i'
if [[ -z $SMVARS ]]
then
echo '$SMVARS is not set. Please source '/path/to/Sherman-Morrison/smvars.sh''
exit 1
fi
for ext in c cpp h hpp
do
find $SMROOT -type f -iname "*.${ext}" -exec echo "$FORMATER $STYLE" {} \;
done