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* Modified Maponi algo 3 so that it can be used with a number of updates

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that is smaller than the size of the Slater-matrix
* Removed the Slater-matrix as an argument, since it is not used in the
  algo.
* Added a manual 4x4 example to debug MaponiA3 to work with a number of
  updates that is smaller than the size of the Slater-matrix
* Added a new Octave script to quickly check if the computes inverse is
  correct.
This commit is contained in:
François 2021-02-18 19:43:20 +01:00 committed by François Coppens
parent f17a7a2c9b
commit 48c27eb47e
11 changed files with 341 additions and 108 deletions
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3
.gitignore vendored
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@ -4,4 +4,5 @@
cMaponiA3_test
fMaponiA3_test
QMCChem_dataset_test
Slater_*
Updates*

2
Makefile
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@ -38,7 +38,7 @@ clean:
@rm -vf *.o *.mod
distclean: clean
@rm -vf cMaponiA3_test fMaponiA3_test QMCChem_dataset_test
@rm -vf cMaponiA3_test fMaponiA3_test QMCChem_dataset_test Slater_* Updates.dat
## Linking the C++ example program
cMaponiA3_test: $(cMaponiA3_testOBJ)

25
Octave-tests/SMMaponiA3.m
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@ -2,12 +2,12 @@
## p. 283, doi:10.1016/j.laa.2006.07.007
clc ## Clear the screen
## Define the matrix to be inverted. This is example 8 from the paper
## In the future this matrix needs to be read from the function call arguments
A=[1,1,-1; ...
1,1,0; ...
-1,0,-1];
A0=diag(diag(A)); ## The diagonal part of A
### Define the matrix to be inverted. This is example 8 from the paper
### In the future this matrix needs to be read from the function call arguments
#A=[1,1,-1; ...
# 1,1,0; ...
# -1,0,-1];
#A0=diag(diag(A)); ## The diagonal part of A
### The modified example that gives all singular updates at some point
#A=[1,1,1; ...
@ -17,10 +17,18 @@ A0=diag(diag(A)); ## The diagonal part of A
### A square uniform distributed random integer matrix with entries in [-1,1]
#do
# A=randi([-1,1],3,3);
# A=randi([-1,1],4,4);
# A0=diag(diag(A)); ## The diagonal part of A
#until (det(A)!=0 && det(A0)!=0) ## We need both matrices to be simultaniously non-singular
## Define the matrix to be inverted. This is example 8 from the paper
## In the future this matrix needs to be read from the function call arguments
A=[1,0, 1,-1; ...
0,-1, 1, -1; ...
-1,0,-1, 0; ...
1,1, 1, 1];
A0=diag(diag(A)); ## The diagonal part of A
### A square uniform distributed random float matrix with entries in (0,1)
#do
# A=rand(5);
@ -35,6 +43,7 @@ Ainv=zeros(nCols,nCols);
ylk=zeros(nCols,nCols,nCols);
p=zeros(nCols,1);
breakdown=zeros(nCols,1);
cutOff=10e-6
A,A0
printf("Determinant of A is: %d\n",det(A))
@ -109,4 +118,4 @@ else
printf("Still not found. Giving up!\n");
IdTest
endif
endif
endif

40
QMCChem_dataset_test.f90
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@ -20,7 +20,7 @@ program QMCChem_dataset_test
!! Write current S and S_inv to file for check in Octave
open(unit = 2000, file = "Slater_old.dat")
open(unit = 3000, file = "Slater_inv_old.dat")
open(unit = 3000, file = "Slater_old_inv.dat")
do i=1,dim
do j=1,dim
write(2000,"(E23.15, 1X)", advance="no") S(i,j)
@ -29,38 +29,44 @@ program QMCChem_dataset_test
write(2000,*)
write(3000,*)
end do
call flush(2000)
call flush(3000)
close(2000)
close(3000)
!! Send S, S_inv and Updates to MaponiA3 algo
call MaponiA3(S, S_inv, dim, n_updates, Updates, Updates_index)
!! Write Updates to file to check
open(unit = 2000, file = "Updates.dat")
do i=1,dim
do j=1,n_updates
write(2000,"(E23.15, 1X)", advance="no") Updates(i,j)
end do
write(2000,*)
end do
close(2000)
!! Update S itself
!! Update S
do j=1,n_updates
do i=1,dim
col = Updates_index(j)
S(i,col) = S(i,col) + Updates(i,col)
S(i,col) = S(i,col) + Updates(i,j)
end do
end do
!! Send S_inv and Updates to MaponiA3 algo
call MaponiA3(S_inv, dim, n_updates, Updates, Updates_index)
!! Write new S and S_inv to file for check in Octave
open(unit = 2000, file = "Slater_new.dat")
open(unit = 3000, file = "Slater_inv_new.dat")
open(unit = 4000, file = "Slater.dat")
open(unit = 5000, file = "Slater_inv.dat")
do i=1,dim
do j=1,dim
write(2000,"(E23.15, 1X)", advance="no") S(i,j)
write(3000,"(E23.15, 1X)", advance="no") S_inv(i,j)
write(4000,"(E23.15, 1X)", advance="no") S(i,j)
write(5000,"(E23.15, 1X)", advance="no") S_inv(i,j)
end do
write(2000,*)
write(3000,*)
write(4000,*)
write(5000,*)
end do
call flush(2000)
call flush(3000)
close(2000)
close(3000)
close(4000)
close(5000)
deallocate(S, S_inv, Updates, Updates_index)
end program

12
QMCChem_dataset_test.m Normal file
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@ -0,0 +1,12 @@
Sold = dlmread('Slater_old.dat');
Sold_inv = dlmread('Slater_old_inv.dat');
S = dlmread('Slater.dat');
S_inv = dlmread('Slater_inv.dat');
det(Sold*transpose(Sold_inv))
trace(Sold*transpose(Sold_inv))
norm(Sold*transpose(Sold_inv))
det(S*transpose(S_inv))
trace(S*transpose(S_inv))
norm(S*transpose(S_inv))

110
SM_MaponiA3.cpp
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@ -4,54 +4,75 @@
#include "SM_MaponiA3.hpp"
#include "Helpers.hpp"
void MaponiA3(double *Slater0, double *Slater_inv, unsigned int M,
unsigned int N_updates, double *Updates,
unsigned int *Updates_index) {
void MaponiA3(double *Slater_inv, unsigned int Dim, unsigned int N_updates,
double *Updates, unsigned int *Updates_index) {
unsigned int k, l, lbar, i, j, tmp = M;
unsigned int *p = new unsigned int[M + 1];
unsigned int k, l, lbar, i, j, tmp, component;
unsigned int *p = new unsigned int[N_updates + 1];
double alpha, beta;
double *breakdown = new double[M + 1];
double *Al = new double[M * M];
double *breakdown = new double[N_updates + 1];
double *Al = new double[Dim * Dim];
p[0] = 0;
for (i = 0; i < M; i++) {
for (i = 0; i < N_updates; i++) {
p[i + 1] = i + 1;
}
// Declare auxiliary solution matrix ylk
double ***ylk = new double **[M];
for (l = 0; l < M; l++) {
ylk[l] = new double *[M + 1];
for (k = 0; k < M + 1; k++) {
ylk[l][k] = new double[M + 1] {0};
double ***ylk = new double **[N_updates];
for (l = 0; l < N_updates; l++) {
ylk[l] = new double *[N_updates + 1];
for (k = 0; k < N_updates + 1; k++) {
ylk[l][k] = new double[Dim + 1] {0};
}
}
// Calculate all the y0k in M^2 multiplications instead of M^3
cout << endl;
// Calculate all the y0k in Dim^2 multiplications instead of Dim^3
for (k = 1; k < N_updates + 1; k++) {
for (i = 1; i < M + 1; i++) {
for (i = 1; i < Dim + 1; i++) {
cout << k << "," << i << endl;
ylk[0][k][i] =
Slater_inv[(i - 1) * M + (i - 1)] * Updates[(i - 1) * M + (k - 1)];
Slater_inv[(i - 1) * Dim + (i - 1)] * Updates[(i - 1) * Dim + (k - 1)];
}
}
cout << "y0k = " << endl;
for (k = 1; k < N_updates + 1; k++) {
cout << "[ ";
for (i = 1; i < Dim + 1; i++) {
cout << ylk[0][k][i] << " ";
}
cout << " ]" << endl;
}
cout << endl;
showVector(p, N_updates + 1, "p");
showVector(Updates_index, N_updates, "Updates_index");
// Calculate all the ylk from the y0k
for (l = 1; l < M; l++) {
for (j = l; j < M + 1; j++) {
breakdown[j] = abs(1 + ylk[l - 1][p[j]][p[j]]);
for (l = 1; l < N_updates; l++) {
for (j = l; j < N_updates + 1; j++) {
component = Updates_index[p[j] - 1];
cout << component << endl;
breakdown[j] = abs(1 + ylk[l - 1][p[j]][component]);
}
lbar = getMaxIndex(breakdown, N_updates + 1);
// Reset breakdown back to 0 for next round to avoid case where its first element is always the largest
for (i = 0; i < N_updates + 1; i++) {
breakdown[i] = 0;
}
lbar = getMaxIndex(breakdown, M + 1);
tmp = p[l];
p[l] = p[lbar];
p[lbar] = tmp;
for (k = l + 1; k < M + 1; k++) {
beta = 1 + ylk[l - 1][p[l]][p[l]];
if (beta == 0) {
cout << "Break-down condition occured. Exiting..." << endl;
exit;
}
for (i = 1; i < M + 1; i++) {
alpha = ylk[l - 1][p[k]][p[l]] / beta;
component = Updates_index[p[l] - 1];
beta = 1 + ylk[l - 1][p[l]][component];
if (beta == 0) {
cout << "Break-down occured. Exiting..." << endl;
exit;
}
for (k = l + 1; k < N_updates + 1; k++) {
alpha = ylk[l - 1][p[k]][component] / beta;
for (i = 1; i < Dim + 1; i++) {
ylk[l][p[k]][i] = ylk[l - 1][p[k]][i] - alpha * ylk[l - 1][p[l]][i];
}
}
@ -63,26 +84,27 @@ void MaponiA3(double *Slater0, double *Slater_inv, unsigned int M,
double *copy = Slater_inv;
// Construct A-inverse from A0-inverse and the ylk
for (l = 0; l < M; l++) {
for (l = 0; l < N_updates; l++) {
k = l + 1;
beta = 1 + ylk[l][p[k]][p[k]];
for (i = 0; i < M; i++) {
for (j = 0; j < M; j++) {
Al[i * M + j] = (i == j) - (j == p[k]-1) * ylk[l][p[k]][i + 1] / beta;
component = Updates_index[p[k] - 1];
beta = 1 + ylk[l][p[k]][component];
for (i = 0; i < Dim; i++) {
for (j = 0; j < Dim; j++) {
Al[i * Dim + j] = (i == j) - (j == p[k]-1) * ylk[l][p[k]][i + 1] / beta;
}
}
Slater_inv = matMul(Al, Slater_inv, M);
Slater_inv = matMul(Al, Slater_inv, Dim);
}
// Assign the new values of 'Slater_inv' to the old values in 'copy[][]'
for (i = 0; i < M; i++) {
for (j = 0; j < M; j++) {
copy[i * M + j] = Slater_inv[i * M + j];
for (i = 0; i < Dim; i++) {
for (j = 0; j < Dim; j++) {
copy[i * Dim + j] = Slater_inv[i * Dim + j];
}
}
for (l = 0; l < M; l++) {
for (k = 0; k < M + 1; k++) {
for (l = 0; l < N_updates; l++) {
for (k = 0; k < N_updates + 1; k++) {
delete[] ylk[l][k];
}
delete[] ylk[l];
@ -92,11 +114,11 @@ void MaponiA3(double *Slater0, double *Slater_inv, unsigned int M,
}
extern "C" {
void MaponiA3_f(double **linSlater0, double **linSlater_inv, unsigned int *Dim,
void MaponiA3_f(double **linSlater_inv, unsigned int *Dim,
unsigned int *N_updates, double **linUpdates,
unsigned int **Updates_index) {
MaponiA3(*linSlater0, *linSlater_inv, *Dim,
*N_updates, *linUpdates,
*Updates_index);
MaponiA3(*linSlater_inv, *Dim,
*N_updates, *linUpdates,
*Updates_index);
}
}

2
SM_MaponiA3.hpp
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@ -1,3 +1,3 @@
void MaponiA3(double *Slater0, double *Slater_inv, unsigned int M,
void MaponiA3(double *Slater_inv, unsigned int Dim,
unsigned int N_updates, double *Updates,
unsigned int *Updates_index);

4
SM_MaponiA3_mod.f90
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@ -1,10 +1,10 @@
module Sherman_Morrison
interface
subroutine MaponiA3(Slater0, Slater_inv, dim, n_updates, Updates, Updates_index) bind(C, name="MaponiA3_f")
subroutine MaponiA3(Slater_inv, dim, n_updates, Updates, Updates_index) bind(C, name="MaponiA3_f")
use, intrinsic :: iso_c_binding, only : c_int, c_double
integer(c_int), intent(in) :: dim, n_updates
integer(c_int), dimension(:), allocatable, intent(in) :: Updates_index
real(c_double), dimension(:,:), allocatable, intent(in) :: Slater0, Updates
real(c_double), dimension(:,:), allocatable, intent(in) :: Updates
real(c_double), dimension(:,:), allocatable, intent(in out) :: Slater_inv
end subroutine MaponiA3
end interface

2
cMaponiA3_test.cpp
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@ -48,7 +48,7 @@ int main() {
// Define pointers dim and n_updates to use in Sherman-Morrison(...) function call
unsigned int dim = M;
unsigned int n_updates = M;
MaponiA3(A0, A0_inv, dim, n_updates, Ar, Ar_index);
MaponiA3(A0_inv, dim, n_updates, Ar, Ar_index);
showMatrix(A0_inv, M, "A0_inv");
// Deallocate all vectors and matrices

197
fMaponiA3_test.f90
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@ -3,50 +3,181 @@ program Interface_test
use, intrinsic :: iso_c_binding, only : c_int, c_double
implicit none
integer i, j !! Iterators
integer(c_int) :: dim, N_updates
integer(c_int), dimension(:), allocatable :: Ar_index
real(c_double), dimension(:,:), allocatable :: A, A0, Ar
real(c_double), dimension(:,:), allocatable :: A0_inv
integer i, j, col !! Iterators
integer(c_int) :: Dim, N_updates
integer(c_int), dimension(:), allocatable :: Updates_index
real(c_double), dimension(:,:), allocatable :: S, A, Updates
real(c_double), dimension(:,:), allocatable :: S_inv, A_inv
dim = 3
N_updates = 3
allocate(Ar_index(dim), A(dim,dim), A0(dim,dim), Ar(dim,dim), A0_inv(dim,dim))
Dim = 4
N_updates = 2
allocate( S(Dim,Dim), S_inv(Dim,Dim), A(Dim,Dim), A_inv(Dim,Dim), &
Updates(Dim,N_updates), Updates_index(N_updates))
!! Initialize S, S_inv, A and A_inv
S(1,1) = 1.0d0
S(1,2) = 0.0d0
S(1,3) = 1.0d0
S(1,4) = -1.0d0
S(2,1) = 0.0d0
S(2,2) = 1.0d0
S(2,3) = 1.0d0
S(2,4) = 0.0d0
S(3,1) = -1.0d0
S(3,2) = 0.0d0
S(3,3) = -1.0d0
S(3,4) = 0.0d0
S(4,1) = 1.0d0
S(4,2) = 1.0d0
S(4,3) = 1.0d0
S(4,4) = 1.0d0
S_inv(1,1) = 1.0d0
S_inv(1,2) = -1.0d0
S_inv(1,3) = 1.0d0
S_inv(1,4) = 1.0d0
S_inv(2,1) = 1.0d0
S_inv(2,2) = 0.0d0
S_inv(2,3) = 2.0d0
S_inv(2,4) = 1.0d0
S_inv(3,1) = -1.0d0
S_inv(3,2) = 1.0d0
S_inv(3,3) = -2.0d0
S_inv(3,4) = -1.0d0
S_inv(4,1) = -1.0d0
S_inv(4,2) = 0.0d0
S_inv(4,3) = -1.0d0
S_inv(4,4) = 0.0d0
!! Initialize A with M=3 and fill acc. to Eq. (17) from paper
A(1,1) = 1.0d0
A(1,2) = 1.0d0
A(1,3) = -1.0d0
A(2,1) = 1.0d0
A(2,2) = 1.0d0
A(2,3) = 0.0d0
A(1,2) = 0.0d0
A(1,3) = 1.0d0
A(1,4) = -1.0d0
A(2,1) = 0.0d0
A(2,2) = -1.0d0
A(2,3) = 1.0d0
A(2,4) = -1.0d0
A(3,1) = -1.0d0
A(3,2) = 0.0d0
A(3,3) = -1.0d0
A(3,4) = 0.0d0
A(4,1) = 1.0d0
A(4,2) = 1.0d0
A(4,3) = 1.0d0
A(4,4) = 1.0d0
!! Prepare the diagonal matrix A0 and the update matrix Ar
do i=1,dim
Ar_index(i) = i
do j=1,dim
if (i == j) then
A0(i,j) = A(i,j)
A0_inv(i,j) = 1.0d0 / A0(i,j)
else
A0(i,j) = 0.0d0
A0_inv(i,j) = 0.0d0
end if
Ar(i,j) = A(i,j) - A0(i,j)
end do
end do
A_inv(1,1) = 0.0d0
A_inv(1,2) = -1.0d0
A_inv(1,3) = -2.0d0
A_inv(1,4) = -1.0d0
A_inv(2,1) = 1.0d0
A_inv(2,2) = 0.0d0
A_inv(2,3) = 2.0d0
A_inv(2,4) = 1.0d0
A_inv(3,1) = 0.0d0
A_inv(3,2) = 1.0d0
A_inv(3,3) = 1.0d0
A_inv(3,4) = 1.0d0
A_inv(4,1) = -1.0d0
A_inv(4,2) = 0.0d0
A_inv(4,3) = -1.0d0
A_inv(4,4) = 0.0d0
call MaponiA3(A0, A0_inv, dim, n_updates, Ar, Ar_index)
!! Prepare Updates and Updates_index
Updates(1,1) = 0
Updates(1,2) = 0
Updates(2,1) = -2
Updates(2,2) = -1
Updates(3,1) = 0
Updates(3,2) = 0
Updates(4,1) = 0
Updates(4,2) = 0
do i=1,dim
do j=1,dim
write(*,"(F3.0,3X)", advance="no") A0_inv(i,j)
Updates_index(1) = 2
Updates_index(2) = 4
write(*,*)
write(*,*) "Old S = "
do i=1,Dim
do j=1,Dim
write(*,"(F3.0,3X)", advance="no") S(i,j)
end do
write(*,*)
end do
deallocate(Ar_index, A, A0, Ar, A0_inv)
write(*,*)
write(*,*) "Old S_inv = "
do i=1,Dim
do j=1,Dim
write(*,"(F3.0,3X)", advance="no") S_inv(i,j)
end do
write(*,*)
end do
write(*,*)
write(*,*) "Updates = "
do i=1,Dim
do j=1,N_updates
write(*,"(F3.0,3X)", advance="no") Updates(i,j)
end do
write(*,*)
end do
write(*,*)
write(*,*) "Updates_index = "
do i=1,N_updates
write(*,"(I1,3X)", advance="no") Updates_index(i)
end do
write(*,*)
!! Update S
do i=1,N_updates
do j=1,Dim
col = Updates_index(i)
S(j,col) = S(j,col) + Updates(j,i)
end do
end do
!! Update S_inv
call MaponiA3(S_inv, Dim, N_updates, Updates, Updates_index)
write(*,*)
write(*,*)
write(*,*) "New computed S = "
do i=1,Dim
do j=1,Dim
write(*,"(F3.0,3X)", advance="no") S(i,j)
end do
write(*,*)
end do
write(*,*)
write(*,*) "New actual S = "
do i=1,Dim
do j=1,Dim
write(*,"(F3.0,3X)", advance="no") A(i,j)
end do
write(*,*)
end do
write(*,*)
write(*,*)
write(*,*) "New computed S_inv = "
do i=1,Dim
do j=1,Dim
write(*,"(F3.0,3X)", advance="no") S_inv(i,j)
end do
write(*,*)
end do
write(*,*)
write(*,*) "New actual S_inv = "
do i=1,Dim
do j=1,Dim
write(*,"(F3.0,3X)", advance="no") A_inv(i,j)
end do
write(*,*)
end do
deallocate(Updates_index, A, A_inv, S, Updates, S_inv)
end program

52
fMaponiA3_test.f90.org Normal file
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@ -0,0 +1,52 @@
program Interface_test
use Sherman_Morrison, only : MaponiA3
use, intrinsic :: iso_c_binding, only : c_int, c_double
implicit none
integer i, j !! Iterators
integer(c_int) :: Dim, N_updates
integer(c_int), dimension(:), allocatable :: Updates_index
real(c_double), dimension(:,:), allocatable :: A, S, Updates
real(c_double), dimension(:,:), allocatable :: S_inv
Dim = 3
N_updates = 3
allocate(Updates_index(Dim), A(Dim,Dim), S(Dim,Dim), Updates(Dim,Dim), S_inv(Dim,Dim))
!! Initialize A with M=3 and fill acc. to Eq. (17) from paper
A(1,1) = 1.0d0
A(1,2) = 1.0d0
A(1,3) = -1.0d0
A(2,1) = 1.0d0
A(2,2) = 1.0d0
A(2,3) = 0.0d0
A(3,1) = -1.0d0
A(3,2) = 0.0d0
A(3,3) = -1.0d0
!! Prepare the diagonal matrix S and the update matrix Updates
do i=1,Dim
Updates_index(i) = i
do j=1,Dim
if (i == j) then
S(i,j) = A(i,j)
S_inv(i,j) = 1.0d0 / S(i,j)
else
S(i,j) = 0.0d0
S_inv(i,j) = 0.0d0
end if
Updates(i,j) = A(i,j) - S(i,j)
end do
end do
call MaponiA3(S_inv, Dim, N_updates, Updates, Updates_index)
do i=1,Dim
do j=1,Dim
write(*,"(F3.0,3X)", advance="no") S_inv(i,j)
end do
write(*,*)
end do
deallocate(Updates_index, A, S, Updates, S_inv)
end program