From 225c841a8874e6e6150ceae99b45dbd00bfe66f8 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Fran=C3=A7ois=20Coppens?= Date: Wed, 24 Feb 2021 18:41:48 +0100 Subject: [PATCH] * Fixed the 3x3 MaponiA3 C++ example. Update_index vector cannot have values that are smaller than 1 because the first colums in Fortran is stored at 1 and not 0. * Started debugging reading from HDF5 formatted datasets. Slater_inv needs to be transposed before sent to Maponi. Algo fails at the last step. Correct Slater and Inverse fail to produce the identity matrix. Suspect that the matMul function is not working correctly eventhough it looks like it does. --- .gitignore | 3 +- Helpers.hpp | 34 +- Makefile | 11 +- QMCChem_dataset_test.f90 | 8 +- SM_MaponiA3.cpp | 4 - cMaponiA3_test_3x3_3.cpp | 15 +- datasets/datasets.small.dat | 546 +++++++++++++++++++++++++++++++++ datasets/datasets.small.hdf5 | Bin 0 -> 30583 bytes datasets/update_cycle_8169.dat | 32 ++ fMaponiA3_test_3x3_3.f90 | 11 +- fMaponiA3_test_4x4_2.f90 | 22 +- tests/convert-to-h5.py | 2 +- tests/test.cpp | 25 +- 13 files changed, 662 insertions(+), 51 deletions(-) create mode 100644 datasets/datasets.small.dat create mode 100644 datasets/datasets.small.hdf5 create mode 100644 datasets/update_cycle_8169.dat diff --git a/.gitignore b/.gitignore index 84a179d..c4bd975 100644 --- a/.gitignore +++ b/.gitignore @@ -7,4 +7,5 @@ QMCChem_dataset_test Slater* Updates* tests/test -datasets/datasets.* \ No newline at end of file +datasets/datasets.* + diff --git a/Helpers.hpp b/Helpers.hpp index 3c361de..7bc5efd 100644 --- a/Helpers.hpp +++ b/Helpers.hpp @@ -39,11 +39,11 @@ void showMatrix(T *matrix, unsigned int M, string name) { for (unsigned int i = 0; i < M; i++) { cout << "["; for (unsigned int j = 0; j < M; j++) { - if (matrix[i*M+j] >= 0) { - cout << " " << matrix[i*M+j]; + if (matrix[i*M + j] >= 0) { + cout << " " << matrix[i*M + j]; } else { - cout << " " << matrix[i*M+j]; + cout << " " << matrix[i*M + j]; } } cout << " ]" << endl; @@ -51,19 +51,6 @@ void showMatrix(T *matrix, unsigned int M, string name) { cout << endl; } -template -void showMatrixT(T **matrix, unsigned int size, string name) { - cout << name << " = " << endl; - for (unsigned int i = 0; i < size; i++) { - cout << "[ "; - for (unsigned int j = 0; j < size; j++) { - cout << matrix[j][i] << " "; - } - cout << " ]" << endl; - } - cout << endl; -} - template T *transpose(T *A, unsigned int M) { T *B = new T[M*M]; @@ -88,6 +75,20 @@ T *matMul(T *A, T *B, unsigned int M) { return C; } +template +T *matMul2(T *A, T *B, unsigned int M) { + T *C = new T[M*M]; + for (unsigned int i = 0; i < M; i++) { + for (unsigned int j = 0; j < M; j++) { + for (unsigned int k = 0; k < M; k++) { + C[i*M+j] += A[i*M+k] * B[k*M+j]; + } + } + } + showMatrix(C,M,"C"); + return C; +} + template T1 *outProd(T1 *vec1, T2 *vec2, unsigned int M) { T1 *C = new T1[M*M]; @@ -135,7 +136,6 @@ T matDet(T **A, unsigned int M) { delete [] temp; } - template bool is_identity(T *A, unsigned int M, double tolerance) { for (unsigned int i = 0; i < M; i++) { diff --git a/Makefile b/Makefile index 39e1f27..127e584 100644 --- a/Makefile +++ b/Makefile @@ -6,15 +6,16 @@ CXX = icpc FC = ifort ## Compiler flags & common obs & libs -CXXFLAGS = -O0 -debug full -traceback -FFLAGS = -O0 -debug full -traceback +H5CXXFLAGS = -O0 -g +CXXFLAGS = -O0 -g -traceback +FFLAGS = -O0 -g -traceback FLIBS = -lstdc++ OBJS = SM_MaponiA3.o ## Deps & objs for C++ cMaponiA3_test_3x3_3 cMaponiA3_test_3x3_3OBJ = cMaponiA3_test_3x3_3.o fMaponiA3_test_3x3_3OBJ = SM_MaponiA3_mod.o fMaponiA3_test_3x3_3.o -fMaponiA3_test_4x4_2OBJ = SM_MaponiA3_mod.o fMaponiA3_test_4x4_2.o +fMaponiA3_test_4x4_2OBJ = Helpers_mod.o SM_MaponiA3_mod.o fMaponiA3_test_4x4_2.o QMCChem_dataset_testOBJ = Helpers_mod.o SM_MaponiA3_mod.o QMCChem_dataset_test.o @@ -32,7 +33,7 @@ all: cMaponiA3_test_3x3_3 fMaponiA3_test_3x3_3 fMaponiA3_test_4x4_2 QMCChem_data ## Explicit recipe to trigger rebuild and relinking when headerfile is changed SM_MaponiA3.o: SM_MaponiA3.cpp Helpers.hpp - $(CXX) $(ARCH) $(CXXFLAGS) -c -o $@ $< + $(CXX) $(ARCH) $(CXXFLAGS) -fPIC -c -o $@ $< ## Build tagets @@ -64,4 +65,4 @@ QMCChem_dataset_test: $(QMCChem_dataset_testOBJ) $(OBJS) $(FC) $(ARCH) $(FFLAGS) $(FLIBS) -o $@ $^ tests/test: tests/test.cpp SM_MaponiA3.o - $(H5CXX) $(ARCH) $(CXXFLAGS) -o $@ $^ + $(H5CXX) $(ARCH) $(H5CXXFLAGS) -o $@ $^ diff --git a/QMCChem_dataset_test.f90 b/QMCChem_dataset_test.f90 index 4812290..508c0f3 100644 --- a/QMCChem_dataset_test.f90 +++ b/QMCChem_dataset_test.f90 @@ -9,7 +9,7 @@ program QMCChem_dataset_test real(c_double), dimension(:,:), allocatable :: Updates real(c_double), dimension(:,:), allocatable :: S, S_inv, S_inv_t - call Read_dataset("datasets/update_cycle_13.dat", & + call Read_dataset("datasets/update_cycle_8169.dat", & cycle_id, & dim, & n_updates, & @@ -18,7 +18,6 @@ program QMCChem_dataset_test Updates_index, & Updates) allocate(S_inv_t(dim,dim)) - call Transpose(S_inv, S_inv_t, dim) !! Write current S and S_inv to file for check in Octave open(unit = 2000, file = "Slater_old.dat") @@ -53,7 +52,12 @@ program QMCChem_dataset_test end do !! Update S_inv + !! S_inv needs to be transposed first before it + !! goes to MaponiA3 + call Transpose(S_inv, S_inv_t, dim) call MaponiA3(S_inv_t, dim, n_updates, Updates, Updates_index) + !! S_inv_t needs to be transposed back before we + !! can multiply it with S to test unity call Transpose(S_inv_t, S_inv, dim) !! Write new S and S_inv to file for check in Octave diff --git a/SM_MaponiA3.cpp b/SM_MaponiA3.cpp index beac559..187ed65 100644 --- a/SM_MaponiA3.cpp +++ b/SM_MaponiA3.cpp @@ -70,8 +70,6 @@ void MaponiA3(double *Slater_inv, unsigned int Dim, unsigned int N_updates, // a new pointer 'copy' that points to whereever 'Slater_inv' points to now. double *copy = Slater_inv; - // Slater_inv = transpose(Slater_inv, Dim); - // Construct A-inverse from A0-inverse and the ylk for (l = 0; l < N_updates; l++) { // l = 0, 1 k = l + 1; // k = 1, 2 @@ -85,8 +83,6 @@ void MaponiA3(double *Slater_inv, unsigned int Dim, unsigned int N_updates, Slater_inv = matMul(Al, Slater_inv, Dim); } - // Slater_inv = transpose(Slater_inv, Dim); - // Assign the new values of 'Slater_inv' to the old values in 'copy[][]' for (i = 0; i < Dim; i++) { for (j = 0; j < Dim; j++) { diff --git a/cMaponiA3_test_3x3_3.cpp b/cMaponiA3_test_3x3_3.cpp index 8e9ffb4..525d15d 100644 --- a/cMaponiA3_test_3x3_3.cpp +++ b/cMaponiA3_test_3x3_3.cpp @@ -1,12 +1,9 @@ // main.cpp #include "SM_MaponiA3.hpp" #include "Helpers.hpp" -#include -#include int main() { - srand((unsigned) time(0)); unsigned int M = 3; // Dimension of the Slater-matrix unsigned int i, j; // Indices for iterators @@ -37,18 +34,16 @@ int main() { // the inverse of A0_inv of diagonal matrix A0_inv // and the update matrix Ar for (i = 0; i < M; i++) { - A0[i*M+i] = A[i*M+i]; - A0_inv[i*M+i] = 1.0/A[i*M+i]; - Ar_index[i] = i; + A0[i*M + i] = A[i*M + i]; + A0_inv[i*M + i] = 1.0/A[i*M + i]; + Ar_index[i] = i+1; // ! First column needs to start with 1 ! for (j = 0; j < M; j++) { - Ar[i*M+j] = A[i*M+j] - A0[i*M+j]; + Ar[i*M + j] = A[i*M + j] - A0[i*M + j]; } } // Define pointers dim and n_updates to use in Sherman-Morrison(...) function call - unsigned int dim = M; - unsigned int n_updates = M; - MaponiA3(A0_inv, dim, n_updates, Ar, Ar_index); + MaponiA3(A0_inv, M, M, Ar, Ar_index); showMatrix(A0_inv, M, "A0_inv"); // Deallocate all vectors and matrices diff --git a/datasets/datasets.small.dat b/datasets/datasets.small.dat new file mode 100644 index 0000000..c65fc95 --- /dev/null +++ b/datasets/datasets.small.dat @@ -0,0 +1,546 @@ +#START_PACKET +#CYCLE_ID: 13 +#SLATER_MATRIX_DIM: 21 +#NUPDATES: 3 +#SLATER_MATRIX: (i (outer), j (inner)), slater_matrix_alpha(i,j), ddet * slater_matrix_alpha_inv_det(i,j) / ddet +(01,01) -0.123240642249584E+00 0.311919238733319E+02 +(01,02) 0.150952935218811E+00 0.391211616261786E+02 +(01,03) 0.871514901518822E-01 0.230468185418855E+02 +(01,04) -0.150895461440086E+00 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+(21,08) 0.157852247357368E+00 0.278837130191972E+00 +(21,09) 0.170709997415543E+00 0.100161817596371E+00 +(21,10) 0.214689865708351E+00 -0.726523579353106E-01 +(21,11) -0.167143829166889E-01 -0.678547976954667E-01 +(21,12) -0.241510886698961E-01 0.377502144275716E-01 +(21,13) -0.105082295835018E+00 -0.447407742013355E+00 +(21,14) 0.101131219416857E-01 0.419175912148910E+00 +(21,15) 0.525299832224846E-01 -0.233384037060628E+00 +(21,16) -0.143686249852180E+00 -0.418753822037995E-02 +(21,17) 0.132168933749199E+00 -0.856999606537821E-01 +(21,18) -0.693865939974785E-01 -0.714580334063162E-02 +(21,19) 0.104032047092915E+00 -0.161645225161624E-01 +(21,20) 0.185707733035088E+00 -0.856160510487734E-02 +(21,21) -0.296475943177938E-01 0.957054267749156E-01 +#COL_UPDATE_INDEX: 12 +#COL_UPDATE_COMP_(01): 0.102125488221645E+00 +#COL_UPDATE_COMP_(02): 0.962643101811409E-01 +#COL_UPDATE_COMP_(03): -0.180085301399231E-01 +#COL_UPDATE_COMP_(04): -0.116052091121674E+00 +#COL_UPDATE_COMP_(05): 0.100100971758366E-01 +#COL_UPDATE_COMP_(06): 0.168905649334192E-01 +#COL_UPDATE_COMP_(07): -0.168554261326790E-01 +#COL_UPDATE_COMP_(08): 0.334977582097054E-01 +#COL_UPDATE_COMP_(09): 0.775983557105064E-01 +#COL_UPDATE_COMP_(10): -0.509594380855560E-01 +#COL_UPDATE_COMP_(11): -0.110948169603944E-01 +#COL_UPDATE_COMP_(12): -0.301160980015993E-01 +#COL_UPDATE_COMP_(13): -0.210931494832039E+00 +#COL_UPDATE_COMP_(14): -0.409047538414598E-02 +#COL_UPDATE_COMP_(15): 0.239971160888672E+00 +#COL_UPDATE_COMP_(16): -0.458180941641331E-01 +#COL_UPDATE_COMP_(17): 0.231322161853313E-01 +#COL_UPDATE_COMP_(18): -0.548814050853252E-01 +#COL_UPDATE_COMP_(19): 0.185034181922674E-01 +#COL_UPDATE_COMP_(20): -0.714888703078032E-02 +#COL_UPDATE_COMP_(21): -0.105082295835018E+00 +#COL_UPDATE_INDEX: 13 +#COL_UPDATE_COMP_(01): -0.727039668709040E-02 +#COL_UPDATE_COMP_(02): -0.329451821744442E-01 +#COL_UPDATE_COMP_(03): 0.230633586645126E+00 +#COL_UPDATE_COMP_(04): 0.322856456041336E-01 +#COL_UPDATE_COMP_(05): 0.188164815306664E+00 +#COL_UPDATE_COMP_(06): 0.976034477353096E-01 +#COL_UPDATE_COMP_(07): 0.124376058578491E+00 +#COL_UPDATE_COMP_(08): -0.241902604699135E+00 +#COL_UPDATE_COMP_(09): -0.214029267430305E+00 +#COL_UPDATE_COMP_(10): -0.164923388510942E-01 +#COL_UPDATE_COMP_(11): -0.796175077557564E-01 +#COL_UPDATE_COMP_(12): 0.552074126899242E-01 +#COL_UPDATE_COMP_(13): 0.794003605842590E-01 +#COL_UPDATE_COMP_(14): -0.999749153852463E-01 +#COL_UPDATE_COMP_(15): 0.135955372825265E-01 +#COL_UPDATE_COMP_(16): -0.876737236976624E-01 +#COL_UPDATE_COMP_(17): 0.210409909486771E+00 +#COL_UPDATE_COMP_(18): 0.177621953189373E-01 +#COL_UPDATE_COMP_(19): -0.151124328374863E+00 +#COL_UPDATE_COMP_(20): 0.247122272849083E+00 +#COL_UPDATE_COMP_(21): -0.161797225475311E+00 +#COL_UPDATE_INDEX: 21 +#COL_UPDATE_COMP_(01): -0.817385390400887E-01 +#COL_UPDATE_COMP_(02): 0.108162150718272E-02 +#COL_UPDATE_COMP_(03): 0.693925749510527E-02 +#COL_UPDATE_COMP_(04): 0.493063451722264E-02 +#COL_UPDATE_COMP_(05): -0.334013439714909E-01 +#COL_UPDATE_COMP_(06): 0.323923602700233E-01 +#COL_UPDATE_COMP_(07): 0.120032556355000E+00 +#COL_UPDATE_COMP_(08): -0.119067849591374E-01 +#COL_UPDATE_COMP_(09): -0.334841385483742E-01 +#COL_UPDATE_COMP_(10): 0.125436363741755E-01 +#COL_UPDATE_COMP_(11): -0.145120620727539E+00 +#COL_UPDATE_COMP_(12): -0.101416520774364E-01 +#COL_UPDATE_COMP_(13): -0.723919421434402E-01 +#COL_UPDATE_COMP_(14): 0.134314149618149E+00 +#COL_UPDATE_COMP_(15): -0.125767393037677E-01 +#COL_UPDATE_COMP_(16): 0.361425074515864E-03 +#COL_UPDATE_COMP_(17): -0.351854860782623E-01 +#COL_UPDATE_COMP_(18): -0.506495498120785E-01 +#COL_UPDATE_COMP_(19): -0.291761625558138E-01 +#COL_UPDATE_COMP_(20): -0.932136957999319E-03 +#COL_UPDATE_COMP_(21): -0.500183776021004E-01 +#END_PACKET + +#START_PACKET +#CYCLE_ID: 8169 +#SLATER_MATRIX_DIM: 4 +#NUPDATES: 2 +#SLATER_MATRIX: (i (outer), j (inner)), slater_matrix_alpha(i,j), ddet * slater_matrix_alpha_inv_det(i,j) / ddet +(01,01) 0.100000000000000E+01 0.100000000000000E+01 +(01,02) 0.000000000000000E+00 0.100000000000000E+01 +(01,03) 0.100000000000000E+01 -0.100000000000000E+01 +(01,04) -0.100000000000000E+01 -0.100000000000000E+01 +(02,01) 0.000000000000000E+00 -0.100000000000000E+01 +(02,02) 0.100000000000000E+01 0.000000000000000E+00 +(02,03) 0.100000000000000E+01 0.100000000000000E+01 +(02,04) 0.000000000000000E+00 0.000000000000000E+00 +(03,01) -0.100000000000000E+01 0.100000000000000E+01 +(03,02) 0.000000000000000E+00 0.200000000000000E+01 +(03,03) -0.100000000000000E+01 -0.200000000000000E+01 +(03,04) 0.000000000000000E+00 -0.100000000000000E+01 +(04,01) 0.100000000000000E+01 0.100000000000000E+01 +(04,02) 0.100000000000000E+01 0.100000000000000E+01 +(04,03) 0.100000000000000E+01 -0.100000000000000E+01 +(04,04) 0.100000000000000E+01 0.000000000000000E+00 +#COL_UPDATE_INDEX: 2 +#COL_UPDATE_COMP_(01): 0.000000000000000E+00 +#COL_UPDATE_COMP_(02): -0.200000000000000E+01 +#COL_UPDATE_COMP_(03): 0.000000000000000E+00 +#COL_UPDATE_COMP_(04): 0.000000000000000E+00 +#COL_UPDATE_INDEX: 4 +#COL_UPDATE_COMP_(01): 0.000000000000000E+00 +#COL_UPDATE_COMP_(02): -0.100000000000000E+01 +#COL_UPDATE_COMP_(03): 0.000000000000000E+00 +#COL_UPDATE_COMP_(04): 0.000000000000000E+00 +#END_PACKET diff --git a/datasets/datasets.small.hdf5 b/datasets/datasets.small.hdf5 new file mode 100644 index 0000000000000000000000000000000000000000..2c0ba2e104a6345d80789f2f66e9cc4fd25c4cf8 GIT binary patch literal 30583 zcmeI42UrwI*QkdKl0iU;B2hqcj*@fEC`mvhgCId*hLJ1?0tyI{ge8dNoIwO6NKQ%^ zf|7F_7{XnI+5LC->fU|6@PGT=X&(A?)j3^V{r2hU(^Xv+svskWdx`uK;B3Lf1fT*4 zzHP!+rx%Nd$9WDs4cD7pY#?38kPDfOe7=DMIQs(tu3Y33UX=fPI~^@qS-{Vh@bcmE zVmH7P+W8i|9C$uL{{KNhK~_@Z>`VK8lwMWL;xE`tO>23)uw;M#@X!taCM`!W3YHRQst;dcLMJ^o^~|KrS&0O;SIW9O^0 zC)GJoI3JXspKE8^1V3k=Yi@lz2ehA4XZgs;$lpvcFP?-bNPbw~41T#X=P9E9QSN6S zelq~z*}39BY<=!m=m3q2dId}VxPsR%)P96Nw!3wq#$o=k9p{Dm8PSjJ&aVXkz>M)@ zyZaaFIH@1o{j;?s7X@D2mH?ce)3`tXpXGa+P-z+~Xq#UVw`DY#z$Cg}N-S95o<`($ 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zi@!+Vd(%=0nEl0q{-XIG-*?a7MBuM8e|&JGtF4Rn>KemHUrv%adu^pVQhsKZX;J+sv_CL1!XKVlYer5N!_NzZ@M}f~x^ga1+ zm`-6`=iCX-s&MxI&BgwB-`+a6`UltFYe%{EC*`_ccmdq(_q^cu1zeAi2m%NK2m%NK z2m%NK2m%NKe{TYRgE)HL>>TmGC60z)&A$GjK>$GjK>$GjLEvvj G;Qs(aZ=8|< literal 0 HcmV?d00001 diff --git a/datasets/update_cycle_8169.dat b/datasets/update_cycle_8169.dat new file mode 100644 index 0000000..da61bcd --- /dev/null +++ b/datasets/update_cycle_8169.dat @@ -0,0 +1,32 @@ +#START_PACKET +#CYCLE_ID: 8169 +#SLATER_MATRIX_DIM: 4 +#NUPDATES: 2 +#SLATER_MATRIX: (i (outer), j (inner)), slater_matrix_alpha(i,j), ddet * slater_matrix_alpha_inv_det(i,j) / ddet +(01,01) 0.100000000000000E+01 0.100000000000000E+01 +(01,02) 0.000000000000000E+00 0.100000000000000E+01 +(01,03) 0.100000000000000E+01 -0.100000000000000E+01 +(01,04) -0.100000000000000E+01 -0.100000000000000E+01 +(02,01) 0.000000000000000E+00 -0.100000000000000E+01 +(02,02) 0.100000000000000E+01 0.000000000000000E+00 +(02,03) 0.100000000000000E+01 0.100000000000000E+01 +(02,04) 0.000000000000000E+00 0.000000000000000E+00 +(03,01) -0.100000000000000E+01 0.100000000000000E+01 +(03,02) 0.000000000000000E+00 0.200000000000000E+01 +(03,03) -0.100000000000000E+01 -0.200000000000000E+01 +(03,04) 0.000000000000000E+00 -0.100000000000000E+01 +(04,01) 0.100000000000000E+01 0.100000000000000E+01 +(04,02) 0.100000000000000E+01 0.100000000000000E+01 +(04,03) 0.100000000000000E+01 -0.100000000000000E+01 +(04,04) 0.100000000000000E+01 0.000000000000000E+00 +#COL_UPDATE_INDEX: 2 +#COL_UPDATE_COMP_(01): 0.000000000000000E+00 +#COL_UPDATE_COMP_(02): -0.200000000000000E+01 +#COL_UPDATE_COMP_(03): 0.000000000000000E+00 +#COL_UPDATE_COMP_(04): 0.000000000000000E+00 +#COL_UPDATE_INDEX: 4 +#COL_UPDATE_COMP_(01): 0.000000000000000E+00 +#COL_UPDATE_COMP_(02): -0.100000000000000E+01 +#COL_UPDATE_COMP_(03): 0.000000000000000E+00 +#COL_UPDATE_COMP_(04): 0.000000000000000E+00 +#END_PACKET diff --git a/fMaponiA3_test_3x3_3.f90 b/fMaponiA3_test_3x3_3.f90 index f63d88a..bbc921c 100644 --- a/fMaponiA3_test_3x3_3.f90 +++ b/fMaponiA3_test_3x3_3.f90 @@ -1,6 +1,5 @@ program Interface_test - use Sherman_Morrison, only : MaponiA3 - use, intrinsic :: iso_c_binding, only : c_int, c_double + use Sherman_Morrison implicit none integer i, j !! Iterators @@ -24,6 +23,14 @@ program Interface_test A(3,2) = 0.0d0 A(3,3) = -1.0d0 + do i=1,Dim + do j=1,Dim + write(*,"(F3.0,3X)", advance="no") A(i,j) + end do + write(*,*) + end do + write(*,*) + !! Prepare the diagonal matrix S and the update matrix Updates do i=1,Dim Updates_index(i) = i diff --git a/fMaponiA3_test_4x4_2.f90 b/fMaponiA3_test_4x4_2.f90 index 2ca2350..863b87b 100644 --- a/fMaponiA3_test_4x4_2.f90 +++ b/fMaponiA3_test_4x4_2.f90 @@ -1,17 +1,17 @@ program Interface_test - use Sherman_Morrison, only : MaponiA3 - use, intrinsic :: iso_c_binding, only : c_int, c_double + use Sherman_Morrison + use Helpers implicit none integer i, j, col !! Iterators integer(c_int) :: Dim, N_updates integer(c_int), dimension(:), allocatable :: Updates_index real(c_double), dimension(:,:), allocatable :: S, A, Updates - real(c_double), dimension(:,:), allocatable :: S_inv, A_inv + real(c_double), dimension(:,:), allocatable :: S_inv, S_inv_t, A_inv Dim = 4 N_updates = 2 - allocate( S(Dim,Dim), S_inv(Dim,Dim), A(Dim,Dim), A_inv(Dim,Dim), & + allocate( S(Dim,Dim), S_inv(Dim,Dim), S_inv_t(Dim,Dim), A(Dim,Dim), A_inv(Dim,Dim), & Updates(Dim,N_updates), Updates_index(N_updates)) !! Initialize S, S_inv, A and A_inv @@ -110,6 +110,16 @@ program Interface_test close(2000) close(3000) + !! Write Updates to file to check + open(unit = 2000, file = "Updates.dat") + do i=1,dim + do j=1,n_updates + write(2000,"(E23.15, 1X)", advance="no") Updates(i,j) + end do + write(2000,*) + end do + close(2000) + !! Update S do i=1,N_updates do j=1,Dim @@ -119,7 +129,9 @@ program Interface_test end do !! Update S_inv - call MaponiA3(S_inv, Dim, N_updates, Updates, Updates_index) + call Transpose(S_inv, S_inv_t, Dim) + call MaponiA3(S_inv_t, Dim, N_updates, Updates, Updates_index) + call Transpose(S_inv_t, S_inv, Dim) !! Write new S and S_inv to file for check in Octave open(unit = 4000, file = "Slater.dat") diff --git a/tests/convert-to-h5.py b/tests/convert-to-h5.py index e3dcaf9..72a1173 100644 --- a/tests/convert-to-h5.py +++ b/tests/convert-to-h5.py @@ -7,7 +7,7 @@ def rl(rf): with h5py.File('datasets.hdf5', 'w') as f: - with open('datasets.dat', 'r') as rf: + with open('datasets.short.dat', 'r') as rf: while(1): line = rl(rf) if not line or not line.startswith('#START_PACKET'): diff --git a/tests/test.cpp b/tests/test.cpp index 8e31c09..199bdef 100644 --- a/tests/test.cpp +++ b/tests/test.cpp @@ -9,7 +9,7 @@ using namespace H5; #define DEBUG 1 -const H5std_string FILE_NAME( "datasets.hdf5" ); +const H5std_string FILE_NAME( "datasets.small.hdf5" ); void read_int(H5File file, std::string key, unsigned int * data) { DataSet ds = file.openDataSet(key); @@ -29,7 +29,7 @@ int test_cycle(H5File file, int cycle) { std::string group = "cycle_" + std::to_string(cycle); - unsigned int dim, nupdates; + unsigned int dim, nupdates, col, i, j; read_int(file, group + "/slater_matrix_dim", &dim); read_int(file, group + "/nupdates", &nupdates); @@ -38,6 +38,7 @@ int test_cycle(H5File file, int cycle) { double * slater_inverse = new double[dim*dim]; read_double(file, group + "/slater_inverse", slater_inverse); + slater_inverse = transpose(slater_inverse, dim); unsigned int * col_update_index = new unsigned int[nupdates]; read_int(file, group + "/col_update_index", col_update_index); @@ -50,13 +51,28 @@ int test_cycle(H5File file, int cycle) { showMatrix(slater_matrix, dim, "Slater"); #endif +#ifdef DEBUG + showMatrix(slater_inverse, dim, "Inverse"); +#endif + + for (j = 0; j < nupdates; j++) { + for (i = 0; i < dim; i++) { + col = col_update_index[j]; + slater_matrix[i*dim + (col - 1)] += updates[i + j*dim]; + } + } + MaponiA3(slater_inverse, dim, nupdates, updates, col_update_index); +#ifdef DEBUG + showMatrix(slater_matrix, dim, "Slater"); +#endif + #ifdef DEBUG showMatrix(slater_inverse, dim, "Inverse"); #endif - double * res = matMul(slater_matrix, slater_inverse, dim); + double * res = matMul2(slater_matrix, slater_inverse, dim); bool ok = is_identity(res, dim, 1.0e-8); #ifdef DEBUG @@ -80,7 +96,8 @@ int main(int argc, char **argv) { if (ok) { std::cerr << "ok -- cycle " << std::to_string(cycle) << std::endl; - } else { + } + else { std::cerr << "failed -- cycle " << std::to_string(cycle) << std::endl; } return ok;