TREX/Sherman-Morrison
1
0
Fork 0
mirror of https://github.com/TREX-CoE/Sherman-Morrison.git synced 2024-12-24 13:23:45 +01:00
Code Issues Projects Releases Wiki Activity

cuBLAS version of Woodbury KxK is working, but called to lapacke dgetrf/ri need to be replaced with cuSOLVER calls to eliminate intermediate results to be transfered to/from device.

Browse Source
This commit is contained in:
Francois Coppens 2022-09-22 14:37:00 +02:00
parent 892358d0d1
commit 00bdcba230
8 changed files with 157 additions and 314 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

12
independent_test_harness/Makefile
View File

@ -1,11 +1,15 @@
FC = ifx
CC = nvc
#FC = ifx
#CC = nvc
CFLAGS=-std=c99 -O3 -Wall -g -mp -target=gpu
LDFLAGS=-L$(HDF5_DIR)/lib -lhdf5 -lhdf5_hl
INCLUDE=-I$(NVHPC_ROOT)/math_libs/include
LDFLAGS=-L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -lhdf5_hl
LDFLAGS+=-L$(MKLROOT)/lib/intel64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lm -ldl
LDFLAGS+=-lcublas -mp -target=gpu
LDFLAGS+=-L$(NVHPC_ROOT)/math_libs/lib64 -lcublas -mp -target=gpu
all: test
## Link with icc
# test: sm.o test.o detupdate21.o meuk.o

27
independent_test_harness/cblasdgemm_vs_cublasdgemm_test.c
View File

@ -1,18 +1,21 @@
/*
Compile with:
nvc -L${MKLROOT}/lib/intel64 \
-lmkl_intel_lp64 \
-lmkl_sequential \
-lmkl_core \
-lpthread \
-lm \
-ldl \
-lcublas \
-mp \
-target=gpu \
cblasdgemm_vs_cublasdgemm_test.c \
-o cblasdgemm_vs_cublasdgemm_test
nvc \
-I$NV_CUDA_MATH_PATH/11.7/include \
-L$NV_CUDA_MATH_PATH/11.7/lib64 \
-L${MKLROOT}/lib/intel64 \
-lmkl_intel_lp64 \
-lmkl_sequential \
-lmkl_core \
-lpthread \
-lm \
-ldl \
-lcublas \
-mp \
-target=gpu \
cblasdgemm_vs_cublasdgemm_test.c \
-o cblasdgemm_vs_cublasdgemm_test
*/

22
independent_test_harness/debug.h
View File

@ -1,11 +1,29 @@
void print_m(const double* mat, uint16_t m, uint16_t n, uint16_t ldm, char* name)
#include <stdint.h>
#include <stdlib.h>
#include <stdio.h>
void print_dm(const double* mat, uint16_t m, uint16_t n, uint16_t ldm, char* name)
{
printf("%s = \n", name);
for (uint16_t i = 0; i < m; ++i)
{
for (uint16_t j = 0; j < n; ++j)
{
printf("%11.5f ", mat[i * ldm + j]);
printf("%9.3f ", mat[i * ldm + j]);
}
printf("\n");
}
printf("\n");
}
void print_im(const int* mat, uint16_t m, uint16_t n, uint16_t ldm, char* name)
{
printf("%s = \n", name);
for (uint16_t i = 0; i < m; ++i)
{
for (uint16_t j = 0; j < n; ++j)
{
printf("%d ", mat[i * ldm + j]);
}
printf("\n");
}

3
independent_test_harness/kernels.h
View File

@ -7,8 +7,9 @@
#ifdef HAVE_CUBLAS_OFFLOAD
#include <stdio.h>
#include <cuda_runtime.h>
#include <omp.h>
#include <cublas_v2.h>
#include <cuda_runtime_api.h>
#endif
lapack_int inverse(double *A, uint64_t Dim, uint64_t Lds);

2
independent_test_harness/meuk.h
View File

@ -4,7 +4,7 @@
#include <assert.h>
#include <stdlib.h>
#include <string.h>
#include "hdf5.h"
#include <hdf5/serial/hdf5.h>
#include "kernels.h"
typedef struct Error {

221
independent_test_harness/sm.c
View File

@ -299,9 +299,8 @@ uint32_t qmckl_woodbury_k(const uint64_t vLDS,
// Compute determinant by LU decomposition
int ipiv[N_updates];
lapack_int ret;
ret = LAPACKE_dgetrf(LAPACK_ROW_MAJOR, N_updates, N_updates, B, N_updates, ipiv);
if (ret != 0) return ret;
(void) LAPACKE_dgetrf(LAPACK_ROW_MAJOR, N_updates, N_updates, B, N_updates, ipiv);
double det = 1.0;
int j = 0;
for (uint32_t i = 0; i < N_updates; i++) {
@ -319,8 +318,7 @@ uint32_t qmckl_woodbury_k(const uint64_t vLDS,
if (determinant) *determinant *= det;
// Compute B^{-1} with explicit formula for K x K inversion
ret = LAPACKE_dgetri(LAPACK_ROW_MAJOR, N_updates, B, N_updates, ipiv);
if (ret != 0) return ret;
(void) LAPACKE_dgetri(LAPACK_ROW_MAJOR, N_updates, B, N_updates, ipiv);
// tmp1 = B^{-1} D : KxLDS = KxK X KxLDS : standard dgemm
double tmp1[N_updates * LDS];
@ -328,37 +326,13 @@ uint32_t qmckl_woodbury_k(const uint64_t vLDS,
N_updates, LDS, N_updates,
alpha, B, N_updates, D, LDS,
beta, tmp1, LDS);
print_m(tmp1, N_updates, LDS, LDS, "tmp1_cblas");
// Compute S^{-1} - C * tmp1 : Dim x LDS : standard dgemm
// alpha = -1.0, beta = 1.0;
// cblas_dgemm(CblasRowMajor, CblasNoTrans, CblasNoTrans,
// Dim, LDS, N_updates,
// alpha, C, N_updates, tmp1, LDS,
// beta, Slater_inv, LDS);
double *tmp2 = calloc(1, DIM * LDS * sizeof(double));
cblas_dgemm(CblasRowMajor,
CblasNoTrans, CblasNoTrans,
alpha = -1.0, beta = 1.0;
cblas_dgemm(CblasRowMajor, CblasNoTrans, CblasNoTrans,
Dim, LDS, N_updates,
alpha, C, N_updates, tmp1, LDS,
beta, tmp2, LDS);
print_m(tmp2, DIM, LDS, LDS, "tmp2_cblas");
double *tmp3 = calloc(1, DIM * LDS * sizeof(double));
for(int i = 0; i < DIM * LDS; ++i)
{
tmp3[i] = Slater_inv[i] - tmp2[i];
}
print_m(tmp3, DIM, LDS, LDS, "tmp3_cblas");
for(int i = 0; i < DIM * LDS; ++i)
{
Slater_inv[i] = tmp3[i];
}
free(tmp2);
free(tmp3);
beta, Slater_inv, LDS);
return 0;
}
@ -368,133 +342,130 @@ uint32_t qmckl_woodbury_k_cublas_offload(cublasHandle_t handle,
const uint64_t vLDS,
const uint64_t vDim,
const uint64_t N_updates,
const double *__restrict __attribute__((aligned(8))) Updates,
const uint64_t *__restrict Updates_index,
const double* Updates,
const uint64_t* Updates_index,
const double breakdown,
double *__restrict __attribute__((aligned(8))) Slater_inv,
double *__restrict determinant) {
double* Slater_inv,
double* determinant)
{
const uint32_t Dim = DIM;
const uint32_t Lds = LDS;
// Compute C = S^{-1} U : Dim x K : standard dgemm
double *C = calloc(1, DIM * N_updates * sizeof(double));
double alpha = 1.0f, beta = 0.0f;
#pragma omp target enter data map(to:Slater_inv[0:DIM*LDS], Updates[0:LDS*N_updates], C[0:DIM*N_updates])
#pragma omp target data use_device_ptr(Slater_inv, Updates, C)
{
int cublasError = cublasDgemm(handle,
CUBLAS_OP_T, CUBLAS_OP_N,
15, 21, 24,
&alpha, Updates, 24, Slater_inv, 24,
&beta, C, 15);
}
#pragma omp target exit data map(from:C[0:DIM*N_updates])
double alpha, beta;
int* ipiv = calloc(1, sizeof *ipiv * N_updates);
double* C = calloc(1, sizeof *C * Dim * N_updates);
double* B = calloc(1, sizeof *B * N_updates * N_updates);
double* D = calloc(1, sizeof *D * N_updates * Lds);
double* T1 = calloc(1, sizeof *T1 * N_updates * Lds);
double* T2 = calloc(1, sizeof *T2 * Dim * Lds);
// Construct B = 1 + V C : K x K : selecting and copying row from C into B. Can maybe be off-loaded to GPU by splitting in N_updates tiles of N_updates strides, using PARALLEL and SIMD
// Construct D = V S^{-1} : K x LDS
double *B = calloc(1, N_updates * N_updates * sizeof(double));
double *D = calloc(1, N_updates * LDS * sizeof(double));
for (uint32_t i = 0; i < N_updates; i++) {
const uint32_t row = Updates_index[i] - 1;
for (uint32_t j = 0; j < N_updates ; j++) B[i * N_updates + j] = C[row * N_updates + j] + (i == j);
for (uint32_t j = 0; j < Lds; j++) D[i * Lds + j] = Slater_inv[row * Lds + j];
#pragma omp target enter data map(to: Updates[0:Lds*N_updates], \
Updates_index[0:N_updates], \
Slater_inv[0:Dim*Lds]) \
map(alloc: B[0:N_updates*N_updates], \
C[0:Dim*N_updates], \
D[0:N_updates*Lds], \
T1[0:N_updates*Lds], \
T2[0:Dim*Lds], \
ipiv[0:N_updates])
#pragma omp target data use_device_ptr(Slater_inv, Updates, C) // compute C ON DEVICE
{
alpha = 1.0f, beta = 0.0f;
(void) cublasDgemm(handle,
CUBLAS_OP_T, CUBLAS_OP_N,
N_updates, Dim, Lds,
&alpha, Updates, Lds, Slater_inv, Lds,
&beta, C, N_updates);
}
// Construct B = 1 + V C : K x K
// Construct D = V S^{-1} : K x LDS
#pragma omp target teams distribute parallel for // compute B, D ON DEVICE
for (uint32_t i = 0; i < N_updates; i++)
{
const uint32_t row = Updates_index[i] - 1;
for (uint32_t j = 0; j < N_updates ; j++)
{
B[i * N_updates + j] = C[row * N_updates + j] + (i == j);
}
for (uint32_t j = 0; j < Lds; j++)
{
D[i * Lds + j] = Slater_inv[row * Lds + j];
}
}
#pragma omp target update from(B[0:N_updates*N_updates]) // Update B ON HOST
// Compute determinant by LU decomposition
int ipiv[N_updates];
lapack_int ret;
ret = LAPACKE_dgetrf(LAPACK_ROW_MAJOR, N_updates, N_updates, B, N_updates, ipiv);
if (ret != 0) return ret;
double det = 1.0;
int j = 0;
for (uint32_t i = 0; i < N_updates; i++) {
(void) LAPACKE_dgetrf(LAPACK_ROW_MAJOR, N_updates, N_updates, B, N_updates, ipiv);
#pragma omp target update to(B[0:N_updates*N_updates], ipiv[0:N_updates]) // Update B ON DEVICE
double det = 1.0f; uint32_t j = 0;
#pragma omp target teams distribute parallel for // compute det ON DEVICE
for (uint32_t i = 0; i < N_updates; i++)
{
j += min(ipiv[i] - i, 1);
det *= B[(N_updates + 1) * i]; // update determinant
}
if ((j & 1) == 0) det = -det; // multiply det with -1 if j is even
// Check if determinant of B is not too close to zero
if (fabs(det) < breakdown) {
return 1;
}
if (fabs(det) < breakdown) return det;
// Update det(Slater) if passed
if (determinant) *determinant *= det;
// Compute B^{-1} with explicit formula for K x K inversion
ret = LAPACKE_dgetri(LAPACK_ROW_MAJOR, N_updates, B, N_updates, ipiv);
if (ret != 0) return ret;
// Compute B^{-1}
(void) LAPACKE_dgetri(LAPACK_ROW_MAJOR, N_updates, B, N_updates, ipiv); // compute B^-1 ON HOST
#pragma omp target update to(B[:N_updates*N_updates]) // Update B^-1 TO DEVICE
// tmp1 = B^{-1} D : KxLDS = KxK X KxLDS : standard dgemm
double *tmp1 = calloc(1, N_updates * LDS * sizeof(double));
#pragma omp target enter data map(to:D[0:N_updates*LDS], B[0:N_updates*N_updates], tmp1[0:N_updates*LDS])
#pragma omp target data use_device_ptr(D, B, tmp1)
// T1 = B^{-1} D : KxLDS = KxK X KxLDS : standard dgemm
#pragma omp target data use_device_ptr(D, B, T1) // compute T1 ON DEVICE
{
int cublasError = cublasDgemm(handle,
alpha = 1.0, beta = 0.0;
(void) cublasDgemm(handle,
CUBLAS_OP_N, CUBLAS_OP_N,
LDS, N_updates, N_updates,
&alpha, D, LDS, B, N_updates,
&beta, tmp1, LDS);
Lds, N_updates, N_updates,
&alpha, D, Lds, B, N_updates,
&beta, T1, Lds);
}
#pragma omp target exit data map(from:tmp1[0:N_updates*LDS])
print_m(tmp1, N_updates, LDS, LDS, "tmp1_cublas");
// Compute tmp2 = C * tmp1 : Dim x LDS
double *tmp2 = calloc(1, DIM * LDS * sizeof(double));
#pragma omp target enter data map(to:tmp1[0:N_updates*LDS], C[0:DIM*N_updates], tmp2[0:DIM*LDS])
#pragma omp target data use_device_ptr(tmp1, C, tmp2)
// Compute T2 <- C * T1 : Dim x LDS : standard dgemm
#pragma omp target data use_device_ptr(T1, C, T2) // compute T2 ONM DEVICE
{
int cublasError = cublasDgemm(handle,
alpha = 1.0f, beta = 0.0f;
(void) cublasDgemm(handle,
CUBLAS_OP_N, CUBLAS_OP_N,
LDS, Dim, N_updates,
&alpha, tmp1, LDS, C, N_updates,
&beta, tmp2, LDS);
Dim, Lds, N_updates,
&alpha, T1, Lds, C, N_updates,
&beta, T2, Lds);
}
#pragma omp target exit data map(from:tmp2[0:DIM*LDS])
print_m(tmp2, DIM, LDS, LDS, "tmp2_cublas");
// Compute tmp3 = S^{-1} - tmp2
double *tmp3 = calloc(1, DIM * LDS * sizeof(double));
beta = -1.0f;
#pragma omp target enter data map(to:Slater_inv[0:DIM*LDS], tmp2[0:DIM*LDS], tmp3[0:DIM*LDS])
#pragma omp target data use_device_ptr(Slater_inv, tmp2, tmp3)
// Compute S^{-1} <- S^{-1} - T2 : Dim x LDS : standard dgemm
#pragma omp target teams distribute parallel for // compute S^-1 ON DEVICE
for (uint32_t i = 0; i < Dim * Lds; i++)
{
int cublasError = cublasDgeam(handle,
CUBLAS_OP_N, CUBLAS_OP_N,
DIM, LDS,
&alpha, Slater_inv, LDS,
&beta, tmp2, LDS,
tmp3, LDS);
}
#pragma omp target exit data map(from:tmp3[0:DIM*LDS])
print_m(tmp3, DIM, LDS, LDS, "tmp3_cublas");
for(int i = 0; i < DIM * LDS; ++i)
{
Slater_inv[i] = tmp3[i];
Slater_inv[i] = Slater_inv[i] - T2[i];
}
#pragma omp target update from(Slater_inv[0:Dim*Lds]) // update S^-1 ON HOST
// // Compute S^{-1} <- S^{-1} - tmp2
// beta = -1.0f;
// #pragma omp target enter data map(to:Slater_inv[0:DIM*LDS], tmp2[0:DIM*LDS])
// #pragma omp target data use_device_ptr(Slater_inv, tmp2)
// {
// int cublasError = cublasDgeam(handle,
// CUBLAS_OP_N, CUBLAS_OP_N,
// DIM, LDS,
// &alpha, Slater_inv, LDS,
// &beta, tmp2, LDS,
// Slater_inv, LDS);
// }
// #pragma omp target exit data map(from:Slater_inv[0:DIM*LDS])
#pragma omp target exit data map(delete: Updates[0:Lds*N_updates], \
Updates_index[0:N_updates], \
Slater_inv[0:Dim*Lds], \
B[0:N_updates*N_updates], \
C[0:Dim*N_updates], \
D[0:N_updates*Lds], \
T1[0:N_updates*Lds], \
T2[0:Dim*Lds], \
ipiv[0:N_updates])
// free(ipiv);
free(B);
free(C);
free(D);
free(tmp1);
free(tmp2);
// free(tmp3);
free(T1);
free(T2);
return 0;
}
#endif

92
independent_test_harness/test.c.old
View File

@ -1,92 +0,0 @@
#include <assert.h>
#include "data_cm.h"
#include "meuk.h"
#define REPETITIONS 10000000
int main(int argc, char **argv) {
assert(argc == 3);
char *version = argv[1];
char *number_of_updates = argv[2];
const uint64_t Dim = 21;
const uint64_t LDS = 24;
// const double breakdown = 1e-3;
const double breakdown = 1e-9; // this might be too small and cause NIs
uint32_t rc;
const uint64_t *N_updates;
const double *Updates;
const uint64_t *Updates_index;
double *Slater, *Slater_invT;
double determinant;
if (number_of_updates[0] == '2') { // 2 Updates
N_updates = &N_updates2;
Updates = &Updates2[0];
Updates_index = &Updates_index2[0];
Slater = &Slater2[0];
Slater_invT = &Slater_invT2[0]; // Slater_inv in QMC=Chem is actually its transpose
determinant = determinant2;
} else if (number_of_updates[0] == '3') { // 3 Updates
N_updates = &N_updates3;
Updates = &Updates3[0];
Updates_index = &Updates_index3[0];
Slater = &Slater3[0];
Slater_invT = &Slater_invT3[0];
determinant = determinant3;
} else if (number_of_updates[0] == '5') { // 5 Updates
N_updates = &N_updates5;
Updates = &Updates5[0];
Updates_index = &Updates_index5[0];
Slater = &Slater5[0];
Slater_invT = &Slater_invT5[0];
determinant = determinant5;
} else { // Exit
printf("Incorrect number of updates given\n");
return 1;
}
rc = check_residual(LDS, Dim, Slater_invT, Slater);
assert(rc == 0 && "check_residual()");
rc = test_kernel(version, LDS, Dim, *N_updates, Updates, Updates_index,
breakdown, Slater, Slater_invT, &determinant);
assert(rc == 0 && "test_kernel()");
// EVERYTHING WORKS UP UNTILL HERE
uint64_t before = rdtsc();
if (version[0] == 'a') { // Anthony
for (int i = 0; i < REPETITIONS; i++) {
const double* Upds;
const uint64_t* Ui;
for (int j = 0; j < *N_updates; j++) {
Upds = &Updates[j*LDS];
Ui = &Updates_index[j];
detupd(Dim, LDS, Upds, Ui, Slater_invT, &determinant);
}
}
} else if (version[0] == 'n') { // Naive
for (int i = 0; i < REPETITIONS; i++) {
rc = qmckl_sherman_morrison(LDS, Dim, *N_updates, Updates,
Updates_index, breakdown, Slater_invT, &determinant);
if (rc != 0) printf("qmckl_sherman_morrison failed\n");
}
} else if (version[0] == 's') { // Splitting
for (int i = 0; i < REPETITIONS; i++) {
rc = qmckl_sherman_morrison_splitting(LDS, Dim, *N_updates, Updates,
Updates_index, breakdown, Slater_invT, &determinant);
if (rc != 0) printf("qmckl_sherman_morrison_splitting failed\n");
}
} else if (version[0] == 'b') { // Blocked
for (int i = 0; i < REPETITIONS; i++) {
// rc = qmckl_woodbury_2(LDS, Dim, Updates, Updates_index,
// breakdown, Slater_inv, &determinant);
// rc = qmckl_woodbury_3(LDS, Dim, Updates, Updates_index,
// breakdown, Slater_inv, &determinant);
rc = qmckl_sherman_morrison_smw32s(LDS, Dim, *N_updates, Updates,
Updates_index, breakdown, Slater_invT, &determinant);
if (rc != 0) printf("qmckl_sherman_morrison_smw32s failed\n");
}
}
uint64_t after = rdtsc();
printf("cycles = %f\n", ((double)(after - before) / (double) REPETITIONS));
}

62
independent_test_harness/test.c.older
View File

@ -1,62 +0,0 @@
#include <assert.h>
#include <stdint.h>
#include <stdio.h>
#include <stdlib.h>
static __inline__ uint64_t rdtsc(void) {
unsigned hi, lo;
__asm__ __volatile__("rdtsc" : "=a"(lo), "=d"(hi));
return ((unsigned long long)lo) | (((unsigned long long)hi) << 32);
}
int qmckl_sherman_morrison(
const uint64_t LDS, const uint64_t Dim, const uint64_t N_updates,
const double *__restrict __attribute__((aligned(8))) Updates,
const uint64_t *__restrict Updates_index, const double breakdown,
double *__restrict __attribute__((aligned(8))) Slater_inv,
double *__restrict determinant);
int detupd(const uint64_t LDS, const uint64_t Dim, const uint64_t N_updates,
const double *__restrict __attribute__((aligned(8))) Updates,
const uint64_t *__restrict Updates_index, const double breakdown,
double *__restrict __attribute__((aligned(8))) Slater_inv,
double *__restrict determinant);
#define REPETITIONS 100000000
int main(int argc, char **argv) {
assert(argc == 2);
char *version = argv[1];
const uint64_t Dim = 21;
const uint64_t LDS = 24;
const uint64_t N_updates = 1;
double Updates[LDS] __attribute__((aligned(8)));
uint64_t Updates_index[N_updates];
Updates_index[0] = 1;
const double breakdown = 1e-3;
double Slater_inv[LDS * Dim] __attribute__((aligned(8)));
double determinant = 1.0;
for (int i = 0; i < Dim; i++) {
Updates[i] = i;
for (int j = 0; j < Dim; j++) {
Slater_inv[LDS * i + j] = j;
}
}
uint64_t before = rdtsc();
if (version[0] == 'c') {
for (int i = 0; i < REPETITIONS; i++) {
detupd(LDS, Dim, N_updates, Updates, Updates_index, breakdown, Slater_inv,
&determinant);
}
} else {
for (int i = 0; i < REPETITIONS; i++) {
qmckl_sherman_morrison(LDS, Dim, N_updates, Updates, Updates_index,
breakdown, Slater_inv, &determinant);
}
}
uint64_t after = rdtsc();
printf("cycles = %f\n", ((double)(after - before) / (double)REPETITIONS));
}