(* vim::syntax=ocaml *) open Qputils open Qptypes open Sexplib.Std (** Interactive editing of the input. WARNING This file is automatically generated by `${{QP_ROOT}}/scripts/ezfio_interface/ei_handler.py` *) (** Keywords used to define input sections *) type keyword = | Ao_basis | Determinants_by_hand | Electrons | Mo_basis | Nuclei_by_hand {keywords} let keyword_to_string = function | Ao_basis -> "AO basis" | Determinants_by_hand -> "Determinants_by_hand" | Electrons -> "Electrons" | Mo_basis -> "MO basis" | Nuclei_by_hand -> "Molecule" {keywords_to_string} (** Create the header of the temporary file *) let file_header filename = Printf.sprintf " ================================================================== Quantum Package ================================================================== Editing file `%s` " filename (** Creates the header of a section *) let make_header kw = let s = keyword_to_string kw in let l = String.length s in "\n\n"^s^"\n"^(String.init l (fun _ -> '='))^"\n\n" (** Returns the rst string of section [s] *) let get s = let header = (make_header s) in let f (read,to_rst) = match read () with | Some text -> header ^ (Rst_string.to_string (to_rst text)) | None -> "" in let rst = try begin let open Input in match s with | Mo_basis -> f Mo_basis.(read, to_rst) | Electrons -> f Electrons.(read, to_rst) | Nuclei_by_hand -> f Nuclei_by_hand.(read, to_rst) | Ao_basis -> f Ao_basis.(read, to_rst) | Determinants_by_hand -> f Determinants_by_hand.(read ~full:false, to_rst) {section_to_rst} end with | Sys_error msg -> (Printf.eprintf "Info: %s\n%!" msg ; "") in rst (** Applies the changes from the string [str] corresponding to section [s] *) let set str s = let header = (make_header s) in match String_ext.substr_index ~pos:0 ~pattern:header str with | None -> () | Some idx -> begin let index_begin = idx + (String.length header) in let index_end = match ( String_ext.substr_index ~pos:(index_begin+(String.length header)+1) ~pattern:"==" str) with | Some i -> i | None -> String.length str in let l = index_end - index_begin in let str = String.sub str index_begin l |> Rst_string.of_string in let write (of_rst,w) s = try match of_rst str with | Some data -> w data | None -> () with | _ -> (Printf.eprintf "Info: Read error in %s\n%!" (keyword_to_string s); ignore (of_rst str) ) in let open Input in match s with {write} | Electrons -> write Electrons.(of_rst, write) s | Determinants_by_hand -> write Determinants_by_hand.(of_rst, write ~force:false) s | Nuclei_by_hand -> write Nuclei_by_hand.(of_rst, write) s | Ao_basis -> () (* TODO *) | Mo_basis -> () (* TODO *) end (** Creates the temporary file for interactive editing *) let create_temp_file ?filename ezfio_filename fields = let temp_filename = match filename with | None -> Filename.temp_file "qp_edit_" ".rst" | Some f -> f in let () = match filename with | None -> at_exit (fun () -> Sys.remove temp_filename) | _ -> () in begin let oc = open_out temp_filename in (file_header ezfio_filename) :: (List.map get fields) |> String.concat "\n" |> Printf.fprintf oc "%s"; close_out oc; temp_filename end let run check_only ?ndet ?state ?read ?write ezfio_filename = (* Set check_only if the arguments are not empty *) let open_editor = match ndet, state, read, write with | None, None, None, None -> not check_only | _ -> false in (* Open EZFIO *) if (not (Sys.file_exists ezfio_filename)) then failwith (ezfio_filename^" does not exists"); Ezfio.set_file ezfio_filename; (* Clean qp_stop status *) [ "qpstop" ; "qpkill" ] |> List.iter (fun f -> let stopfile = Filename.concat (Qpackage.ezfio_work ezfio_filename) f in if Sys.file_exists stopfile then Sys.remove stopfile ); (* Reorder basis set *) begin match Input.Ao_basis.read() with | Some aos -> let ordering = Input.Ao_basis.ordering aos in let test = Array.copy ordering in Array.sort compare test ; if test <> ordering then begin Printf.eprintf "Warning: Basis set is not properly ordered. Redordering.\n"; let new_aos = Input.Ao_basis.reorder aos in Input.Ao_basis.write new_aos; match Input.Mo_basis.read() with | None -> () | Some mos -> let new_mos = Input.Mo_basis.reorder mos ordering in Input.Mo_basis.write new_mos end | _ -> () end; begin match ndet with | None -> () | Some n -> Input.Determinants_by_hand.update_ndet (Det_number.of_int n) end; begin match state with | None -> () | Some range -> begin Input.Determinants_by_hand.extract_states range end end; (* let output = (file_header ezfio_filename) :: ( List.map get [ Ao_basis ; Mo_basis ; ]) in String.concat output |> print_string *) let tasks = [ Nuclei_by_hand ; Ao_basis; Electrons ; {tasks} Mo_basis; Determinants_by_hand ; ] in (* Create the temp file *) let temp_filename = match read, write with | None, None -> create_temp_file ezfio_filename tasks | Some filename, None -> filename | None, filename -> create_temp_file ?filename ezfio_filename tasks | x, y -> failwith "read and write options are incompatible" in if open_editor then begin (* Open the temp file with external editor *) let editor = try Sys.getenv "EDITOR" with Not_found -> "vi" in Printf.sprintf "%s %s" editor temp_filename |> Sys.command |> ignore end; if write = None then (* Re-read the temp file *) let temp_string = let ic = open_in temp_filename in let result = input_lines ic |> String.concat "\n" in close_in ic; result in List.iter (fun x -> set temp_string x) tasks (** Remove the backup file *) let remove_backup ezfio_filename = let backup_filename = Printf.sprintf "%s/work/backup.tar" ezfio_filename in try Sys.remove backup_filename with _ -> () (** Create a backup file in case of an exception *) let create_backup ezfio_filename = remove_backup ezfio_filename; let backup_filename = Printf.sprintf "%s/work/backup.tar" ezfio_filename in try Printf.sprintf " mkdir -p %s/work ; tar -cf .backup.tar --exclude=\"work/*\" %s && (mv .backup.tar %s || rm .backup.tar) " ezfio_filename ezfio_filename backup_filename |> Sys.command |> ignore with _ -> () (** Restore the backup file when an exception occuprs *) let restore_backup ezfio_filename = let filename = Printf.sprintf "%s/work/backup.tar" ezfio_filename in if Sys.file_exists filename then begin Printf.sprintf "tar -xf %s" filename |> Sys.command |> ignore; remove_backup ezfio_filename end let () = let open Command_line in begin set_header_doc (Sys.argv.(0) ^ " - quantum_package command"); set_description_doc "Opens a text editor to edit the parameters of an EZFIO directory."; [ {{ short='c'; long="check"; opt=Optional; doc="Checks the input data"; arg=Without_arg; }}; {{ short='w'; long="write"; opt=Optional; doc="Writes the qp_edit file to a file\""; arg=With_arg ""; }}; {{ short='r'; long="read"; opt=Optional; doc="Reads the file and applies it to the EZFIO\""; arg=With_arg ""; }}; {{ short='n'; long="ndet"; opt=Optional; doc="Truncates the wavefunction to the target number of determinants"; arg=With_arg ""; }}; {{ short='s'; long="state"; opt=Optional; doc="Extracts selected states, for example \"[1,3-5]\""; arg=With_arg ""; }}; anonymous "EZFIO_DIR" Mandatory "EZFIO directory"; ] |> set_specs ; end; (* Handle options *) let write = Command_line.get "write" in let read = Command_line.get "read" in let ndet = match Command_line.get "ndet" with | None -> None | Some s -> (try Some (int_of_string s) with _ -> failwith "[-n|--ndet] expects an integer") in let state = match Command_line.get "state" with | None -> None | Some s -> (try Some (Range.of_string s) with _ -> failwith "[-s|--state] expects a range") in let c = Command_line.get_bool "check" in let ezfio_filename = match Command_line.anon_args () with | [x] -> x | _ -> (Command_line.help () ; failwith "EZFIO_DIR is missing") in at_exit (fun () -> remove_backup ezfio_filename); (* Run the program *) try if (not c) then create_backup ezfio_filename; run c ?ndet ?state ?read ?write ezfio_filename with | Failure exc | Invalid_argument exc -> begin Printf.eprintf "=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-\n\n"; Printf.eprintf "%s\n\n" exc; Printf.eprintf "=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-\n\n"; restore_backup ezfio_filename; ignore @@ exit 1 end | Assert_failure (file, line, ch) -> begin Printf.eprintf "=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-\n\n"; Printf.eprintf "Assert error in file $QP_ROOT/ocaml/%s, line %d, character %d\n\n" file line ch; Printf.eprintf "=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-\n\n"; restore_backup ezfio_filename; ignore @@ exit 2 end; exit 0