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mirror of https://github.com/QuantumPackage/qp2.git synced 2024-11-03 12:43:48 +01:00

Merge branch 'dev-stable' of https://github.com/QuantumPackage/qp2 into dev-stable

This commit is contained in:
eginer 2024-07-12 16:20:12 +02:00
commit d7bf334fc0
37 changed files with 4158 additions and 1653 deletions

28
configure vendored
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@ -40,6 +40,7 @@ Usage:
$(basename $0) -c <file>
$(basename $0) -h
$(basename $0) -i <package>
$(basename $0) -g [nvidia|intel|none]
Options:
-c <file> Define a COMPILATION configuration file,
@ -48,6 +49,7 @@ Options:
-i <package> INSTALL <package>. Use at your OWN RISK:
no support will be provided for the installation of
dependencies.
-g [nvidia|intel|none] Choose GPU acceleration
Example:
./$(basename $0) -c config/gfortran.cfg
@ -83,7 +85,7 @@ function execute () {
PACKAGES=""
while getopts "d:c:i:h" c ; do
while getopts "d:c:i:g:h" c ; do
case "$c" in
c)
case "$OPTARG" in
@ -100,6 +102,9 @@ while getopts "d:c:i:h" c ; do
"") help ; break;;
*) PACKAGES="${PACKAGE} $OPTARG"
esac;;
g)
GPU=$OPTARG;
break;;
h)
help
exit 0;;
@ -109,6 +114,27 @@ while getopts "d:c:i:h" c ; do
esac
done
# Handle GPU acceleration
rm -f ${QP_ROOT}/src/gpu_arch
case "$GPU" in
amd) # AMD
echo "Activating AMD GPU acceleration"
ln -s ${QP_ROOT}/plugins/local/gpu_amd ${QP_ROOT}/src/gpu_arch
;;
intel) # Intel
echo "Activating Intel GPU acceleration (EXPERIMENTAL)"
ln -s ${QP_ROOT}/plugins/local/gpu_intel ${QP_ROOT}/src/gpu_arch
;;
nvidia) # Nvidia
echo "Activating Nvidia GPU acceleration"
ln -s ${QP_ROOT}/plugins/local/gpu_nvidia ${QP_ROOT}/src/gpu_arch
;;
*) # No Acceleration
echo "Disabling GPU acceleration"
ln -s ${QP_ROOT}/plugins/local/gpu_x86 ${QP_ROOT}/src/gpu_arch
;;
esac
# Trim leading and trailing spaces
PACKAGES=$(echo $PACKAGES | xargs)

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@ -0,0 +1,2 @@
-ltbb -lsycl -lmkl_sycl -lgpu -limf -lintlc -lstdc++

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@ -0,0 +1 @@

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=========
gpu_intel
=========
Intel implementation of GPU routines. Uses MKL and SYCL.
```bash
icpx -fsycl gpu.cxx -c -qmkl=sequential
```

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@ -0,0 +1,177 @@
#include <CL/sycl.hpp>
#include <cassert>
#include <limits>
#include <oneapi/mkl/blas.hpp>
extern "C" {
/* Generic functions */
int gpu_ndevices() {
return 1;
}
void gpu_set_device(int32_t igpu) {
}
/* Allocation functions */
void gpu_allocate(void** ptr, int64_t size) {
auto queue = sycl::queue(sycl::default_selector_v);
try {
*ptr = sycl::malloc_shared(size, queue);
assert(*ptr != nullptr);
} catch (const sycl::exception& e) {
std::cerr << "SYCL exception caught: " << e.what() << std::endl;
*ptr = nullptr; // If allocation fails, set pointer to nullptr
}
}
void gpu_deallocate(void** ptr) {
assert(*ptr != nullptr);
sycl::free(*ptr, sycl::queue(sycl::default_selector_v));
*ptr = nullptr;
}
/* Upload data from host to device */
void gpu_upload(const void* cpu_ptr, void* gpu_ptr, const int64_t n) {
sycl::queue queue(sycl::default_selector_v);
queue.memcpy(gpu_ptr, cpu_ptr, n).wait();
}
/* Download data from device to host */
void gpu_download(const void* gpu_ptr, void* cpu_ptr, const int64_t n) {
sycl::queue queue(sycl::default_selector_v);
queue.memcpy(cpu_ptr, gpu_ptr, n).wait();
}
/* Copy data from one GPU memory location to another */
void gpu_copy(const void* gpu_ptr_src, void* gpu_ptr_dest, const int64_t n) {
sycl::queue queue(sycl::default_selector_v);
queue.memcpy(gpu_ptr_dest, gpu_ptr_src, n).wait();
}
/* Queues */
/* SYCL queue as a replacement for CUDA stream */
void gpu_stream_create(sycl::queue** ptr) {
*ptr = new sycl::queue(sycl::default_selector_v);
}
void gpu_stream_destroy(sycl::queue** ptr) {
assert(*ptr != nullptr);
delete *ptr;
*ptr = nullptr;
}
void gpu_synchronize() {
sycl::queue queue(sycl::default_selector_v);
queue.wait_and_throw();
}
/* BLAS functions */
typedef struct {
sycl::queue* queue;
} blasHandle_t;
void gpu_set_stream(blasHandle_t* handle, sycl::queue* ptr) {
handle->queue = ptr;
}
void gpu_blas_create(blasHandle_t** ptr) {
*ptr = (blasHandle_t*) malloc(sizeof(blasHandle_t));
assert(*ptr != nullptr);
(*ptr)->queue = new sycl::queue(sycl::default_selector_v);
assert((*ptr)->queue != nullptr);
}
void gpu_blas_destroy(blasHandle_t** ptr) {
assert(*ptr != nullptr);
delete (*ptr)->queue;
free(*ptr);
*ptr = nullptr;
}
void gpu_ddot(blasHandle_t* handle, const int64_t n, const double* x, const int64_t incx,
const double* y, const int64_t incy, double* result) {
// Ensure input parameters are valid
assert(handle != nullptr);
assert(handle->queue != nullptr);
assert(n > 0);
assert(incx > 0);
assert(incy > 0);
assert(x != nullptr);
assert(y != nullptr);
assert(result != nullptr);
oneapi::mkl::blas::dot(*handle->queue, n, x, incx, y, incy, result);
}
void gpu_dgemv(blasHandle_t* handle, const char* transa, const int64_t m, const int64_t n, const double* alpha,
const double* a, const int64_t lda, const double* x, const int64_t incx, const double* beta, double* y, const int64_t incy) {
assert(handle != nullptr);
assert(handle->queue != nullptr);
// Validate matrix dimensions and increments to be positive
assert(m > 0 && n > 0 && lda > 0 && incx > 0 && incy > 0);
assert(a != nullptr && x != nullptr && y != nullptr && alpha != nullptr && beta != nullptr);
// Determine the operation type
oneapi::mkl::transpose transa_ = oneapi::mkl::transpose::nontrans;
if (*transa == 'T' || *transa == 't') {
transa_ = oneapi::mkl::transpose::trans;
}
// Perform DGEMV operation using oneMKL
oneapi::mkl::blas::column_major::gemv(*handle->queue, transa_, m, n, *alpha, a, lda, x, incx, *beta, y, incy);
}
void gpu_dgemm(blasHandle_t* handle, const char* transa, const char* transb, const int64_t m, const int64_t n, const int64_t k, const double* alpha,
const double* a, const int64_t lda, const double* b, const int64_t ldb, const double* beta, double* c, const int64_t ldc) {
assert(handle != nullptr && handle->queue != nullptr);
assert(m > 0 && n > 0 && k > 0 && lda > 0 && ldb > 0 && ldc > 0);
assert(a != nullptr && b != nullptr && c != nullptr && alpha != nullptr && beta != nullptr);
// Transpose operations
auto transa_ = (*transa == 'T' || *transa == 't') ? oneapi::mkl::transpose::trans : oneapi::mkl::transpose::nontrans;
auto transb_ = (*transb == 'T' || *transb == 't') ? oneapi::mkl::transpose::trans : oneapi::mkl::transpose::nontrans;
oneapi::mkl::blas::column_major::gemm(*handle->queue, transa_, transb_, m, n, k,
*alpha, a, lda, b, ldb, *beta, c, ldc);
}
void gpu_dgeam(blasHandle_t* handle, const char* transa, const char* transb, const int64_t m, const int64_t n, const double* alpha,
const double* a, const int64_t lda, const double* beta, const double* b, const int64_t ldb, double* c, const int64_t ldc) {
assert(handle != nullptr && handle->queue != nullptr);
assert(m > 0 && n > 0 && lda > 0 && ldb > 0 && ldc > 0);
assert(a != nullptr && b != nullptr && c != nullptr && alpha != nullptr && beta != nullptr);
// Determine transpose operations
bool transA = (*transa == 'T' || *transa == 't');
bool transB = (*transb == 'T' || *transb == 't');
handle->queue->submit([&](sycl::handler& cgh) {
cgh.parallel_for(sycl::range<2>(m, n), [=](sycl::id<2> idx) {
const int i = idx[0];
const int j = idx[1];
const int ai = transA ? j * lda + i : i * lda + j;
const int bi = transB ? j * ldb + i : i * ldb + j;
const int ci = i * ldc + j;
c[ci] = (*alpha) * a[ai] + (*beta) * b[bi];
});
});
}
} // extern C

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@ -0,0 +1 @@
-lcudart -lcublas -lcublasLt

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@ -0,0 +1 @@

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@ -0,0 +1,5 @@
==========
gpu_nvidia
==========
Nvidia implementation of GPU routines. Uses CUDA and CUBLAS libraries.

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@ -0,0 +1,326 @@
#include <stdint.h>
#include <stdio.h>
#include <stdbool.h>
#include <stdlib.h>
#include <string.h>
#include <assert.h>
#include <cublas_v2.h>
#include <cuda_runtime.h>
/* Generic functions */
int gpu_ndevices() {
int ngpus;
cudaGetDeviceCount(&ngpus);
return ngpus;
}
void gpu_set_device(int32_t igpu) {
cudaSetDevice((int) igpu);
}
/* Allocation functions */
void gpu_allocate(void** ptr, const int64_t size) {
size_t free, total;
cudaError_t rc = cudaMemGetInfo( &free, &total );
if (rc != cudaSuccess) {
free = INT64_MAX;
}
rc = cudaMallocManaged(ptr, size, cudaMemAttachGlobal);
// /* Use managed memory if it does not fit on the GPU */
// if (size < free && size < total/2) {
// rc= cudaMalloc(ptr, size);
// } else {
// rc = cudaMallocManaged(ptr, size, cudaMemAttachGlobal);
// }
assert (rc == cudaSuccess);
}
void gpu_deallocate(void** ptr) {
assert (*ptr != NULL);
cudaFree(*ptr);
*ptr = NULL;
}
/* Memory transfer functions */
void gpu_upload(const void* cpu_ptr, void* gpu_ptr, const int64_t n) {
cudaMemcpy (gpu_ptr, cpu_ptr, n, cudaMemcpyHostToDevice);
}
void gpu_download(const void* gpu_ptr, void* cpu_ptr, const int64_t n) {
cudaMemcpy (cpu_ptr, gpu_ptr, n, cudaMemcpyDeviceToHost);
}
void gpu_copy(const void* gpu_ptr_src, void* gpu_ptr_dest, const int64_t n) {
cudaMemcpy (gpu_ptr_dest, gpu_ptr_src, n, cudaMemcpyDeviceToDevice);
}
/* Streams */
void gpu_stream_create(cudaStream_t* ptr) {
cudaError_t rc = cudaStreamCreate(ptr);
assert (rc == cudaSuccess);
}
void gpu_stream_destroy(cudaStream_t* ptr) {
assert (ptr != NULL);
cudaError_t rc = cudaStreamDestroy(*ptr);
assert (rc == cudaSuccess);
*ptr = NULL;
}
void gpu_set_stream(cublasHandle_t handle, cudaStream_t stream) {
cublasSetStream(handle, stream);
}
void gpu_synchronize() {
cudaDeviceSynchronize();
}
/* BLAS functions */
void gpu_blas_create(cublasHandle_t* ptr) {
cublasStatus_t rc = cublasCreate(ptr);
assert (rc == CUBLAS_STATUS_SUCCESS);
}
void gpu_blas_destroy(cublasHandle_t* ptr) {
assert (ptr != NULL);
cublasStatus_t rc = cublasDestroy(*ptr);
assert (rc == CUBLAS_STATUS_SUCCESS);
ptr = NULL;
}
void gpu_ddot(cublasHandle_t handle, const int64_t n, const double* x, const int64_t incx, const double* y, const int64_t incy, double* result) {
assert (handle != NULL);
/* Convert to int */
int n_, incx_, incy_;
n_ = (int) n;
incx_ = (int) incx;
incy_ = (int) incy;
assert ( (int64_t) n_ == n );
assert ( (int64_t) incx_ == incx);
assert ( (int64_t) incy_ == incy);
cublasStatus_t rc = cublasDdot(handle, n_, x, incx_, y, incy_, result);
assert (rc == CUBLAS_STATUS_SUCCESS);
}
void gpu_sdot(cublasHandle_t handle, const int64_t n, const float* x, const int64_t incx, const float* y, const int64_t incy, float* result) {
assert (handle != NULL);
/* Convert to int */
int n_, incx_, incy_;
n_ = (int) n;
incx_ = (int) incx;
incy_ = (int) incy;
/* Check for integer overflows */
assert ( (int64_t) n_ == n );
assert ( (int64_t) incx_ == incx);
assert ( (int64_t) incy_ == incy);
float result_ = 0.;
cublasStatus_t rc = cublasSdot(handle, n_, x, incx_, y, incy_, &result_);
assert (rc == CUBLAS_STATUS_SUCCESS);
*result = result_;
}
void gpu_dgemv(cublasHandle_t handle, const char* transa, const int64_t m, const int64_t n, const double* alpha,
const double* a, const int64_t lda, const double* x, const int64_t incx, const double* beta, double* y, const int64_t incy) {
assert (handle != NULL);
/* Convert to int */
int m_, n_, lda_, incx_, incy_;
m_ = (int) m;
n_ = (int) n;
lda_ = (int) lda;
incx_ = (int) incx;
incy_ = (int) incy;
/* Check for integer overflows */
assert ( (int64_t) m_ == m );
assert ( (int64_t) n_ == n );
assert ( (int64_t) lda_ == lda );
assert ( (int64_t) incx_ == incx);
assert ( (int64_t) incy_ == incy);
cublasOperation_t transa_ = CUBLAS_OP_N;
if (*transa == 'T' || *transa == 't') transa_ = CUBLAS_OP_T;
cublasDgemv(handle, transa_, m_, n_, alpha, a, lda_, x, incx_, beta, y, incy_);
}
void gpu_sgemv(cublasHandle_t handle, const char* transa, const int64_t m, const int64_t n, const float* alpha,
const float* a, const int64_t lda, const float* x, const int64_t incx, const float* beta, float* y, const int64_t incy) {
assert (handle != NULL);
/* Convert to int */
int m_, n_, lda_, incx_, incy_;
m_ = (int) m;
n_ = (int) n;
lda_ = (int) lda;
incx_ = (int) incx;
incy_ = (int) incy;
/* Check for integer overflows */
assert ( (int64_t) m_ == m );
assert ( (int64_t) n_ == n );
assert ( (int64_t) lda_ == lda );
assert ( (int64_t) incx_ == incx);
assert ( (int64_t) incy_ == incy);
cublasOperation_t transa_ = CUBLAS_OP_N;
if (*transa == 'T' || *transa == 't') transa_ = CUBLAS_OP_T;
cublasSgemv(handle, transa_, m_, n_, alpha, a, lda_, x, incx_, beta, y, incy_);
}
void gpu_dgemm(cublasHandle_t handle, const char* transa, const char* transb, const int64_t m, const int64_t n, const int64_t k, const double* alpha,
const double* a, const int64_t lda, const double* b, const int64_t ldb, const double* beta, double* c, const int64_t ldc) {
assert (handle != NULL);
/* Convert to int */
int m_, n_, k_, lda_, ldb_, ldc_;
m_ = (int) m;
n_ = (int) n;
k_ = (int) k;
lda_ = (int) lda;
ldb_ = (int) ldb;
ldc_ = (int) ldc;
/* Check for integer overflows */
assert ( (int64_t) m_ == m );
assert ( (int64_t) n_ == n );
assert ( (int64_t) k_ == k );
assert ( (int64_t) lda_ == lda);
assert ( (int64_t) ldb_ == ldb);
assert ( (int64_t) ldc_ == ldc);
cublasOperation_t transa_ = CUBLAS_OP_N;
cublasOperation_t transb_ = CUBLAS_OP_N;
if (*transa == 'T' || *transa == 't') transa_ = CUBLAS_OP_T;
if (*transb == 'T' || *transb == 't') transb_ = CUBLAS_OP_T;
cublasDgemm(handle, transa_, transb_, m_, n_, k_, alpha, a, lda_, b, ldb_, beta, c, ldc_);
}
void gpu_sgemm(cublasHandle_t handle, const char* transa, const char* transb, const int64_t m, const int64_t n, const int64_t k, const float* alpha,
const float* a, const int64_t lda, const float* b, const int64_t ldb, const float* beta, float* c, const int64_t ldc) {
assert (handle != NULL);
/* Convert to int */
int m_, n_, k_, lda_, ldb_, ldc_;
m_ = (int) m;
n_ = (int) n;
k_ = (int) k;
lda_ = (int) lda;
ldb_ = (int) ldb;
ldc_ = (int) ldc;
/* Check for integer overflows */
assert ( (int64_t) m_ == m );
assert ( (int64_t) n_ == n );
assert ( (int64_t) k_ == k );
assert ( (int64_t) lda_ == lda);
assert ( (int64_t) ldb_ == ldb);
assert ( (int64_t) ldc_ == ldc);
cublasOperation_t transa_ = CUBLAS_OP_N;
cublasOperation_t transb_ = CUBLAS_OP_N;
if (*transa == 'T' || *transa == 't') transa_ = CUBLAS_OP_T;
if (*transb == 'T' || *transb == 't') transb_ = CUBLAS_OP_T;
cublasSgemm(handle, transa_, transb_, m_, n_, k_, alpha, a, lda_, b, ldb_, beta, c, ldc_);
}
void gpu_dgeam(cublasHandle_t handle, const char* transa, const char* transb, const int64_t m, const int64_t n, const double* alpha,
const double* a, const int64_t lda, const double* beta, const double* b, const int64_t ldb, double* c, const int64_t ldc) {
assert (handle != NULL);
/* Convert to int */
int m_, n_, lda_, ldb_, ldc_;
m_ = (int) m;
n_ = (int) n;
lda_ = (int) lda;
ldb_ = (int) ldb;
ldc_ = (int) ldc;
/* Check for integer overflows */
assert ( (int64_t) m_ == m );
assert ( (int64_t) n_ == n );
assert ( (int64_t) lda_ == lda);
assert ( (int64_t) ldb_ == ldb);
assert ( (int64_t) ldc_ == ldc);
cublasOperation_t transa_ = CUBLAS_OP_N;
cublasOperation_t transb_ = CUBLAS_OP_N;
if (*transa == 'T' || *transa == 't') transa_ = CUBLAS_OP_T;
if (*transb == 'T' || *transb == 't') transb_ = CUBLAS_OP_T;
cublasDgeam(handle, transa_, transb_, m_, n_, alpha, a, lda_, beta, b, ldb_, c, ldc_);
}
void gpu_sgeam(cublasHandle_t handle, const char* transa, const char* transb, const int64_t m, const int64_t n, const float* alpha,
const float* a, const int64_t lda, const float* beta, const float* b, const int64_t ldb, float* c, const int64_t ldc) {
assert (handle != NULL);
/* Convert to int */
int m_, n_, lda_, ldb_, ldc_;
m_ = (int) m;
n_ = (int) n;
lda_ = (int) lda;
ldb_ = (int) ldb;
ldc_ = (int) ldc;
/* Check for integer overflows */
assert ( (int64_t) m_ == m );
assert ( (int64_t) n_ == n );
assert ( (int64_t) lda_ == lda);
assert ( (int64_t) ldb_ == ldb);
assert ( (int64_t) ldc_ == ldc);
cublasOperation_t transa_ = CUBLAS_OP_N;
cublasOperation_t transb_ = CUBLAS_OP_N;
if (*transa == 'T' || *transa == 't') transa_ = CUBLAS_OP_T;
if (*transb == 'T' || *transb == 't') transb_ = CUBLAS_OP_T;
cublasSgeam(handle, transa_, transb_, m_, n_, alpha, a, lda_, beta, b, ldb_, c, ldc_);
}

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=======
gpu_x86
=======
x86 implementation of GPU routines. For use when GPUs are not available.

502
plugins/local/gpu_x86/gpu.c Normal file
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#include <stdint.h>
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
#include <stdbool.h>
#include <assert.h>
/* Generic functions */
int gpu_ndevices() {
return 0;
}
void gpu_set_device(int32_t i) {
return;
}
/* Allocation functions */
void gpu_allocate(void** ptr, const int64_t n) {
*ptr = malloc((size_t) n);
if (*ptr == NULL) {
perror("Allocation failed");
}
}
void gpu_deallocate(void** ptr) {
free(*ptr);
*ptr = NULL;
}
/* Memory transfer functions */
void gpu_upload(const void* cpu_ptr, void* gpu_ptr, const int64_t n) {
memcpy(gpu_ptr, cpu_ptr, n);
}
void gpu_download(const void* gpu_ptr, void* cpu_ptr, const int64_t n) {
memcpy(cpu_ptr, gpu_ptr, n);
}
void gpu_copy(const void* gpu_ptr_src, void* gpu_ptr_dest, const int64_t n) {
memcpy(gpu_ptr_dest, gpu_ptr_src, n);
}
/* Streams */
void gpu_stream_create(void** ptr) {
*ptr = (void*) malloc(sizeof(char));
}
void gpu_stream_destroy(void** ptr) {
free(*ptr);
*ptr = NULL;
}
void gpu_set_stream(void* handle, void* stream) {
return;
}
void gpu_synchronize() {
return;
}
/* BLAS functions */
void gpu_blas_create(void** handle) {
*handle = (void*) malloc(sizeof(char));
}
void gpu_blas_destroy(void** handle) {
free(*handle);
*handle = NULL;
}
double ddot_(const int32_t* n, const double* x, const int32_t* incx, const double* y, const int32_t* incy);
void gpu_ddot(void* handle, const int64_t n, const double* x, const int64_t incx, const double* y, const int64_t incy, double* result) {
assert (handle != NULL);
/* Convert to int32_t */
int32_t n_, incx_, incy_;
n_ = (int32_t) n;
incx_ = (int32_t) incx;
incy_ = (int32_t) incy;
/* Check for integer overflows */
assert ( (int64_t) n_ == n );
assert ( (int64_t) incx_ == incx);
assert ( (int64_t) incy_ == incy);
*result = ddot_(&n_, x, &incx_, y, &incy_);
}
float sdot_(const int32_t* n, const float* x, const int32_t* incx, const float* y, const int32_t* incy);
void gpu_sdot(void* handle, const int64_t n, const float* x, const int64_t incx, const float* y, const int64_t incy, float* result) {
assert (handle != NULL);
/* Convert to int32_t */
int32_t n_, incx_, incy_;
n_ = (int32_t) n;
incx_ = (int32_t) incx;
incy_ = (int32_t) incy;
/* Check for integer overflows */
assert ( (int64_t) n_ == n );
assert ( (int64_t) incx_ == incx);
assert ( (int64_t) incy_ == incy);
*result = sdot_(&n_, x, &incx_, y, &incy_);
}
void dgemv_(const char* transa, const int32_t* m, const int32_t* n, const double* alpha,
const double* a, const int32_t* lda, const double* x, const int32_t* incx, const double* beta, double* y, const int32_t* incy);
void gpu_dgemv(void* handle, const char* transa, const int64_t m, const int64_t n, const double* alpha,
const double* a, const int64_t lda, const double* x, const int64_t incx, const double* beta, double* y, const int64_t incy) {
assert (handle != NULL);
/* Convert to int32_t */
int32_t m_, n_, lda_, incx_, incy_;
m_ = (int32_t) m;
n_ = (int32_t) n;
lda_ = (int32_t) lda;
incx_ = (int32_t) incx;
incy_ = (int32_t) incy;
/* Check for integer overflows */
assert ( (int64_t) m_ == m );
assert ( (int64_t) n_ == n );
assert ( (int64_t) lda_ == lda );
assert ( (int64_t) incx_ == incx);
assert ( (int64_t) incy_ == incy);
dgemv_(transa, &m_, &n_, alpha, a, &lda_, x, &incx_, beta, y, &incy_);
}
void sgemv_(const char* transa, const int32_t* m, const int32_t* n, const float* alpha,
const float* a, const int32_t* lda, const float* x, const int32_t* incx, const float* beta, float* y, const int32_t* incy);
void gpu_sgemv(void* handle, const char* transa, const int64_t m, const int64_t n, const float* alpha,
const float* a, const int64_t lda, const float* x, const int64_t incx, const float* beta, float* y, const int64_t incy) {
assert (handle != NULL);
/* Convert to int32_t */
int32_t m_, n_, lda_, incx_, incy_;
m_ = (int32_t) m;
n_ = (int32_t) n;
lda_ = (int32_t) lda;
incx_ = (int32_t) incx;
incy_ = (int32_t) incy;
/* Check for integer overflows */
assert ( (int64_t) m_ == m );
assert ( (int64_t) n_ == n );
assert ( (int64_t) lda_ == lda );
assert ( (int64_t) incx_ == incx);
assert ( (int64_t) incy_ == incy);
sgemv_(transa, &m_, &n_, alpha, a, &lda_, x, &incx_, beta, y, &incy_);
}
void dgemm_(const char* transa, const char* transb, const int32_t* m, const int32_t* n, const int32_t* k, const double* alpha,
const double* a, const int32_t* lda, const double* b, const int32_t* ldb, const double* beta, double* c, const int32_t* ldc);
void gpu_dgemm(void* handle, const char* transa, const char* transb, const int64_t m, const int64_t n, const int64_t k, const double* alpha,
const double* a, const int64_t lda, const double* b, const int64_t ldb, const double* beta, double* c, const int64_t ldc) {
assert (handle != NULL);
/* Convert to int32_t */
int32_t m_, n_, k_, lda_, ldb_, ldc_;
m_ = (int32_t) m;
n_ = (int32_t) n;
k_ = (int32_t) k;
lda_ = (int32_t) lda;
ldb_ = (int32_t) ldb;
ldc_ = (int32_t) ldc;
/* Check for integer overflows */
assert ( (int64_t) m_ == m );
assert ( (int64_t) n_ == n );
assert ( (int64_t) k_ == k );
assert ( (int64_t) lda_ == lda);
assert ( (int64_t) ldb_ == ldb);
assert ( (int64_t) ldc_ == ldc);
dgemm_(transa, transb, &m_, &n_, &k_, alpha, a, &lda_, b, &ldb_, beta, c, &ldc_);
}
void sgemm_(const char* transa, const char* transb, const int32_t* m, const int32_t* n, const int32_t* k, const float* alpha,
const float* a, const int32_t* lda, const float* b, const int32_t* ldb, const float* beta, float* c, const int32_t* ldc);
void gpu_sgemm(void* handle, const char* transa, const char* transb, const int64_t m, const int64_t n, const int64_t k, const float* alpha,
const float* a, const int64_t lda, const float* b, const int64_t ldb, const float* beta, float* c, const int64_t ldc) {
assert (handle != NULL);
/* Convert to int32_t */
int32_t m_, n_, k_, lda_, ldb_, ldc_;
m_ = (int32_t) m;
n_ = (int32_t) n;
k_ = (int32_t) k;
lda_ = (int32_t) lda;
ldb_ = (int32_t) ldb;
ldc_ = (int32_t) ldc;
/* Check for integer overflows */
assert ( (int64_t) m_ == m );
assert ( (int64_t) n_ == n );
assert ( (int64_t) k_ == k );
assert ( (int64_t) lda_ == lda);
assert ( (int64_t) ldb_ == ldb);
assert ( (int64_t) ldc_ == ldc);
sgemm_(transa, transb, &m_, &n_, &k_, alpha, a, &lda_, b, &ldb_, beta, c, &ldc_);
}
void gpu_dgeam(void* handle, const char* transa, const char* transb, const int64_t m, const int64_t n, const double* alpha,
const double* a, const int64_t lda, const double* beta, const double* b, const int64_t ldb, double* c, const int64_t ldc) {
assert (handle != NULL);
if ( (*transa == 'N' && *transb == 'N') ||
(*transa == 'n' && *transb == 'N') ||
(*transa == 'N' && *transb == 'n') ||
(*transa == 'n' && *transb == 'n') ) {
if (*alpha == 0.) {
for (int64_t j=0 ; j<n ; ++j) {
for (int64_t i=0 ; i<m ; ++i) {
c[j*ldc+i] = *beta * b[j*ldb+i];
}
}
} else if (*beta == 0.) {
for (int64_t j=0 ; j<n ; ++j) {
for (int64_t i=0 ; i<m ; ++i) {
c[j*ldc+i] = *alpha * a[j*lda+i];
}
}
} else {
for (int64_t j=0 ; j<n ; ++j) {
for (int64_t i=0 ; i<m ; ++i) {
c[j*ldc+i] = *alpha * a[j*lda+i] + *beta * b[j*ldb+i];
}
}
}
} else if ( (*transa == 'N' && *transb == 'T') ||
(*transa == 'n' && *transb == 'T') ||
(*transa == 'N' && *transb == 't') ||
(*transa == 'n' && *transb == 't') ) {
if (*alpha == 0.) {
for (int64_t j=0 ; j<n ; ++j) {
for (int64_t i=0 ; i<m ; ++i) {
c[j*ldc+i] = *beta * b[i*ldb+j];
}
}
} else if (*beta == 0.) {
for (int64_t j=0 ; j<n ; ++j) {
for (int64_t i=0 ; i<m ; ++i) {
c[j*ldc+i] = *alpha * a[j*lda+i];
}
}
} else {
for (int64_t j=0 ; j<n ; ++j) {
for (int64_t i=0 ; i<m ; ++i) {
c[j*ldc+i] = *alpha * a[j*lda+i] + *beta * b[i*ldb+j];
}
}
}
} else if ( (*transa == 'T' && *transb == 'N') ||
(*transa == 't' && *transb == 'N') ||
(*transa == 'T' && *transb == 'n') ||
(*transa == 't' && *transb == 'n') ) {
if (*alpha == 0.) {
for (int64_t j=0 ; j<n ; ++j) {
for (int64_t i=0 ; i<m ; ++i) {
c[j*ldc+i] = *beta * b[j*ldb+i];
}
}
} else if (*beta == 0.) {
for (int64_t j=0 ; j<n ; ++j) {
for (int64_t i=0 ; i<m ; ++i) {
c[j*ldc+i] = *alpha * a[i*lda+j];
}
}
} else {
for (int64_t j=0 ; j<n ; ++j) {
for (int64_t i=0 ; i<m ; ++i) {
c[j*ldc+i] = *alpha * a[i*lda+j] + *beta * b[j*ldb+i];
}
}
}
} else if ( (*transa == 'T' && *transb == 'T') ||
(*transa == 't' && *transb == 'T') ||
(*transa == 'T' && *transb == 't') ||
(*transa == 't' && *transb == 't') ) {
if (*alpha == 0.) {
for (int64_t j=0 ; j<n ; ++j) {
for (int64_t i=0 ; i<m ; ++i) {
c[j*ldc+i] = *beta * b[i*ldb+j];
}
}
} else if (*beta == 0.) {
for (int64_t j=0 ; j<n ; ++j) {
for (int64_t i=0 ; i<m ; ++i) {
c[j*ldc+i] = *alpha * a[i*lda+j];
}
}
} else {
for (int64_t j=0 ; j<n ; ++j) {
for (int64_t i=0 ; i<m ; ++i) {
c[j*ldc+i] = *alpha * a[i*lda+j] + *beta * b[i*ldb+j];
}
}
}
}
}
void gpu_sgeam(void* handle, const char* transa, const char* transb, const int64_t m, const int64_t n, const float* alpha,
const float* a, const int64_t lda, const float* beta, const float* b, const int64_t ldb, float* c, const int64_t ldc) {
assert (handle != NULL);
if ( (*transa == 'N' && *transb == 'N') ||
(*transa == 'n' && *transb == 'N') ||
(*transa == 'N' && *transb == 'n') ||
(*transa == 'n' && *transb == 'n') ) {
if (*alpha == 0.) {
for (int64_t j=0 ; j<n ; ++j) {
for (int64_t i=0 ; i<m ; ++i) {
c[j*ldc+i] = *beta * b[j*ldb+i];
}
}
} else if (*beta == 0.) {
for (int64_t j=0 ; j<n ; ++j) {
for (int64_t i=0 ; i<m ; ++i) {
c[j*ldc+i] = *alpha * a[j*lda+i];
}
}
} else {
for (int64_t j=0 ; j<n ; ++j) {
for (int64_t i=0 ; i<m ; ++i) {
c[j*ldc+i] = *alpha * a[j*lda+i] + *beta * b[j*ldb+i];
}
}
}
} else if ( (*transa == 'N' && *transb == 'T') ||
(*transa == 'n' && *transb == 'T') ||
(*transa == 'N' && *transb == 't') ||
(*transa == 'n' && *transb == 't') ) {
if (*alpha == 0.) {
for (int64_t j=0 ; j<n ; ++j) {
for (int64_t i=0 ; i<m ; ++i) {
c[j*ldc+i] = *beta * b[i*ldb+j];
}
}
} else if (*beta == 0.) {
for (int64_t j=0 ; j<n ; ++j) {
for (int64_t i=0 ; i<m ; ++i) {
c[j*ldc+i] = *alpha * a[j*lda+i];
}
}
} else {
for (int64_t j=0 ; j<n ; ++j) {
for (int64_t i=0 ; i<m ; ++i) {
c[j*ldc+i] = *alpha * a[j*lda+i] + *beta * b[i*ldb+j];
}
}
}
} else if ( (*transa == 'T' && *transb == 'N') ||
(*transa == 't' && *transb == 'N') ||
(*transa == 'T' && *transb == 'n') ||
(*transa == 't' && *transb == 'n') ) {
if (*alpha == 0.) {
for (int64_t j=0 ; j<n ; ++j) {
for (int64_t i=0 ; i<m ; ++i) {
c[j*ldc+i] = *beta * b[j*ldb+i];
}
}
} else if (*beta == 0.) {
for (int64_t j=0 ; j<n ; ++j) {
for (int64_t i=0 ; i<m ; ++i) {
c[j*ldc+i] = *alpha * a[i*lda+j];
}
}
} else {
for (int64_t j=0 ; j<n ; ++j) {
for (int64_t i=0 ; i<m ; ++i) {
c[j*ldc+i] = *alpha * a[i*lda+j] + *beta * b[j*ldb+i];
}
}
}
} else if ( (*transa == 'T' && *transb == 'T') ||
(*transa == 't' && *transb == 'T') ||
(*transa == 'T' && *transb == 't') ||
(*transa == 't' && *transb == 't') ) {
if (*alpha == 0.) {
for (int64_t j=0 ; j<n ; ++j) {
for (int64_t i=0 ; i<m ; ++i) {
c[j*ldc+i] = *beta * b[i*ldb+j];
}
}
} else if (*beta == 0.) {
for (int64_t j=0 ; j<n ; ++j) {
for (int64_t i=0 ; i<m ; ++i) {
c[j*ldc+i] = *alpha * a[i*lda+j];
}
}
} else {
for (int64_t j=0 ; j<n ; ++j) {
for (int64_t i=0 ; i<m ; ++i) {
c[j*ldc+i] = *alpha * a[i*lda+j] + *beta * b[i*ldb+j];
}
}
}
}
}

View File

@ -31,6 +31,9 @@ subroutine print_aos()
integer :: i, ipoint
double precision :: r(3)
double precision :: ao_val, ao_der(3), ao_lap
double precision :: accu_vgl(5)
double precision :: accu_vgl_nrm(5)
double precision :: mo_val, mo_der(3), mo_lap
PROVIDE final_grid_points aos_in_r_array aos_grad_in_r_array aos_lapl_in_r_array
@ -40,9 +43,6 @@ subroutine print_aos()
write(1000, '(3(f15.7, 3X))') r
enddo
double precision :: accu_vgl(5)
double precision :: accu_vgl_nrm(5)
do ipoint = 1, n_points_final_grid
do i = 1, ao_num
ao_val = aos_in_r_array (i,ipoint)

View File

@ -78,7 +78,7 @@ BEGIN_PROVIDER [double precision, ao_two_e_tc_tot, (ao_num, ao_num, ao_num, ao_n
!$OMP PRIVATE (i, j, k, l, ipoint, ao_i_r, ao_k_r, weight1) &
!$OMP SHARED (ao_num, n_points_final_grid, ao_two_e_tc_tot, &
!$OMP aos_in_r_array_transp, final_weight_at_r_vector, int2_grad1_u12_square_ao)
!$OMP DO COLLAPSE(4)
!$OMP DO COLLAPSE(3)
do i = 1, ao_num
do k = 1, ao_num
do l = 1, ao_num
@ -188,7 +188,7 @@ BEGIN_PROVIDER [double precision, ao_two_e_tc_tot, (ao_num, ao_num, ao_num, ao_n
!$OMP SHARED (ao_num, n_points_final_grid, ao_two_e_tc_tot, &
!$OMP aos_in_r_array_transp, final_weight_at_r_vector, &
!$OMP int2_grad1_u12_ao, aos_grad_in_r_array_transp_bis)
!$OMP DO COLLAPSE(4)
!$OMP DO COLLAPSE(3)
do i = 1, ao_num
do k = 1, ao_num
do l = 1, ao_num
@ -270,7 +270,7 @@ BEGIN_PROVIDER [double precision, ao_two_e_tc_tot, (ao_num, ao_num, ao_num, ao_n
!$OMP PARALLEL DEFAULT(NONE) &
!$OMP PRIVATE(i, j, k, l, integ_zero, integ_val) &
!$OMP SHARED(ao_num, ao_two_e_tc_tot)
!$OMP DO COLLAPSE(4)
!$OMP DO COLLAPSE(3)
do j = 1, ao_num
do l = 1, ao_num
do i = 1, ao_num
@ -293,7 +293,7 @@ BEGIN_PROVIDER [double precision, ao_two_e_tc_tot, (ao_num, ao_num, ao_num, ao_n
!$OMP PARALLEL DEFAULT(NONE) &
!$OMP SHARED(ao_num, ao_two_e_tc_tot, ao_integrals_map) &
!$OMP PRIVATE(i, j, k, l)
!$OMP DO COLLAPSE(4)
!$OMP DO COLLAPSE(3)
do j = 1, ao_num
do l = 1, ao_num
do i = 1, ao_num
@ -306,7 +306,6 @@ BEGIN_PROVIDER [double precision, ao_two_e_tc_tot, (ao_num, ao_num, ao_num, ao_n
enddo
!$OMP END DO
!$OMP END PARALLEL
!call clear_ao_map()
FREE ao_integrals_map
endif

View File

@ -0,0 +1,5 @@
tc_keywords
jastrow
qmckl
becke_numerical_grid
dft_utils_in_r

View File

@ -0,0 +1,4 @@
======
tc_int
======

View File

@ -0,0 +1,295 @@
! ---
subroutine provide_int2_grad1_u12_ao()
BEGIN_DOC
!
! int2_grad1_u12_ao(i,j,ipoint,1) = \int dr2 [\grad1 u(r1,r2)]_x1 \chi_i(r2) \chi_j(r2)
! int2_grad1_u12_ao(i,j,ipoint,2) = \int dr2 [\grad1 u(r1,r2)]_y1 \chi_i(r2) \chi_j(r2)
! int2_grad1_u12_ao(i,j,ipoint,3) = \int dr2 [\grad1 u(r1,r2)]_z1 \chi_i(r2) \chi_j(r2)
! int2_grad1_u12_ao(i,j,ipoint,4) = \int dr2 [-(1/2) [\grad1 u(r1,r2)]^2] \chi_i(r2) \chi_j(r2)
!
!
! tc_int_2e_ao(k,i,l,j) = (ki|V^TC(r_12)|lj)
! = <lk| V^TC(r_12) |ji> where V^TC(r_12) is the total TC operator
! = tc_grad_and_lapl_ao(k,i,l,j) + tc_grad_square_ao(k,i,l,j) + ao_two_e_coul(k,i,l,j)
! where:
!
! tc_grad_and_lapl_ao(k,i,l,j) = < k l | -1/2 \Delta_1 u(r1,r2) - \grad_1 u(r1,r2) . \grad_1 | ij >
! = -1/2 \int dr1 (phi_k(r1) \grad_r1 phi_i(r1) - phi_i(r1) \grad_r1 phi_k(r1)) . \int dr2 \grad_r1 u(r1,r2) \phi_l(r2) \phi_j(r2)
! = 1/2 \int dr1 (phi_k(r1) \grad_r1 phi_i(r1) - phi_i(r1) \grad_r1 phi_k(r1)) . \int dr2 (-1) \grad_r1 u(r1,r2) \phi_l(r2) \phi_j(r2)
!
! tc_grad_square_ao(k,i,l,j) = -1/2 <kl | |\grad_1 u(r1,r2)|^2 + |\grad_2 u(r1,r2)|^2 | ij>
!
! ao_two_e_coul(k,i,l,j) = < l k | 1/r12 | j i > = ( k i | 1/r12 | l j )
!
END_DOC
implicit none
integer :: i, j, k, l, m, ipoint, jpoint
integer :: n_blocks, n_rest, n_pass
integer :: i_blocks, i_rest, i_pass, ii
double precision :: mem, n_double
double precision :: weight1, ao_k_r, ao_i_r
double precision :: der_envsq_x, der_envsq_y, der_envsq_z, lap_envsq
double precision :: time0, time1, time2, tc1, tc2, tc
double precision, allocatable :: int2_grad1_u12_ao(:,:,:,:), tc_int_2e_ao(:,:,:,:)
double precision, allocatable :: tmp(:,:,:), c_mat(:,:,:), tmp_grad1_u12(:,:,:)
double precision, external :: get_ao_two_e_integral
PROVIDE final_weight_at_r_vector_extra aos_in_r_array_extra
PROVIDE final_weight_at_r_vector aos_grad_in_r_array_transp_bis final_weight_at_r_vector aos_in_r_array_transp
print*, ' start provide_int2_grad1_u12_ao ...'
call wall_time(time0)
call total_memory(mem)
mem = max(1.d0, qp_max_mem - mem)
n_double = mem * 1.d8
n_blocks = int(min(n_double / (n_points_extra_final_grid * 4.d0), 1.d0*n_points_final_grid))
n_rest = int(mod(n_points_final_grid, n_blocks))
n_pass = int((n_points_final_grid - n_rest) / n_blocks)
call write_int(6, n_pass, 'Number of passes')
call write_int(6, n_blocks, 'Size of the blocks')
call write_int(6, n_rest, 'Size of the last block')
! ---
! ---
! ---
allocate(int2_grad1_u12_ao(ao_num,ao_num,n_points_final_grid,4))
allocate(tmp(n_points_extra_final_grid,ao_num,ao_num))
!$OMP PARALLEL &
!$OMP DEFAULT (NONE) &
!$OMP PRIVATE (j, i, jpoint) &
!$OMP SHARED (tmp, ao_num, n_points_extra_final_grid, final_weight_at_r_vector_extra, aos_in_r_array_extra_transp)
!$OMP DO SCHEDULE (static)
do j = 1, ao_num
do i = 1, ao_num
do jpoint = 1, n_points_extra_final_grid
tmp(jpoint,i,j) = final_weight_at_r_vector_extra(jpoint) * aos_in_r_array_extra_transp(jpoint,i) * aos_in_r_array_extra_transp(jpoint,j)
enddo
enddo
enddo
!$OMP END DO
!$OMP END PARALLEL
allocate(tmp_grad1_u12(n_points_extra_final_grid,n_blocks,4))
tc = 0.d0
do i_pass = 1, n_pass
ii = (i_pass-1)*n_blocks + 1
call wall_time(tc1)
!$OMP PARALLEL &
!$OMP DEFAULT (NONE) &
!$OMP PRIVATE (i_blocks, ipoint) &
!$OMP SHARED (n_blocks, n_points_extra_final_grid, ii, final_grid_points, tmp_grad1_u12)
!$OMP DO
do i_blocks = 1, n_blocks
ipoint = ii - 1 + i_blocks ! r1
call get_grad1_u12_for_tc(ipoint, n_points_extra_final_grid, tmp_grad1_u12(1,i_blocks,1), tmp_grad1_u12(1,i_blocks,2), tmp_grad1_u12(1,i_blocks,3), tmp_grad1_u12(1,i_blocks,4))
enddo
!$OMP END DO
!$OMP END PARALLEL
call wall_time(tc2)
tc = tc + tc2 - tc1
do m = 1, 4
call dgemm( "T", "N", ao_num*ao_num, n_blocks, n_points_extra_final_grid, 1.d0 &
, tmp(1,1,1), n_points_extra_final_grid, tmp_grad1_u12(1,1,m), n_points_extra_final_grid &
, 0.d0, int2_grad1_u12_ao(1,1,ii,m), ao_num*ao_num)
enddo
enddo
deallocate(tmp_grad1_u12)
if(n_rest .gt. 0) then
allocate(tmp_grad1_u12(n_points_extra_final_grid,n_rest,4))
ii = n_pass*n_blocks + 1
call wall_time(tc1)
!$OMP PARALLEL &
!$OMP DEFAULT (NONE) &
!$OMP PRIVATE (i_rest, ipoint) &
!$OMP SHARED (n_rest, n_points_extra_final_grid, ii, final_grid_points, tmp_grad1_u12)
!$OMP DO
do i_rest = 1, n_rest
ipoint = ii - 1 + i_rest ! r1
call get_grad1_u12_for_tc(ipoint, n_points_extra_final_grid, tmp_grad1_u12(1,i_rest,1), tmp_grad1_u12(1,i_rest,2), tmp_grad1_u12(1,i_rest,3), tmp_grad1_u12(1,i_rest,4))
enddo
!$OMP END DO
!$OMP END PARALLEL
call wall_time(tc2)
tc = tc + tc2 - tc1
do m = 1, 4
call dgemm( "T", "N", ao_num*ao_num, n_rest, n_points_extra_final_grid, 1.d0 &
, tmp(1,1,1), n_points_extra_final_grid, tmp_grad1_u12(1,1,m), n_points_extra_final_grid &
, 0.d0, int2_grad1_u12_ao(1,1,ii,m), ao_num*ao_num)
enddo
deallocate(tmp_grad1_u12)
endif
deallocate(tmp)
call wall_time(time1)
print*, ' wall time for int2_grad1_u12_ao (min) = ', (time1-time0) / 60.d0
print*, ' wall time Jastrow derivatives (min) = ', tc / 60.d0
call print_memory_usage()
! ---
! ---
! ---
allocate(tc_int_2e_ao(ao_num,ao_num,ao_num,ao_num))
call wall_time(time1)
allocate(c_mat(n_points_final_grid,ao_num,ao_num))
!$OMP PARALLEL &
!$OMP DEFAULT (NONE) &
!$OMP PRIVATE (i, k, ipoint) &
!$OMP SHARED (aos_in_r_array_transp, c_mat, ao_num, n_points_final_grid, final_weight_at_r_vector)
!$OMP DO SCHEDULE (static)
do i = 1, ao_num
do k = 1, ao_num
do ipoint = 1, n_points_final_grid
c_mat(ipoint,k,i) = final_weight_at_r_vector(ipoint) * aos_in_r_array_transp(ipoint,i) * aos_in_r_array_transp(ipoint,k)
enddo
enddo
enddo
!$OMP END DO
!$OMP END PARALLEL
call dgemm( "N", "N", ao_num*ao_num, ao_num*ao_num, n_points_final_grid, 1.d0 &
, int2_grad1_u12_ao(1,1,1,4), ao_num*ao_num, c_mat(1,1,1), n_points_final_grid &
, 0.d0, tc_int_2e_ao(1,1,1,1), ao_num*ao_num)
deallocate(c_mat)
call wall_time(time2)
print*, ' wall time of Hermitian part of tc_int_2e_ao (min) ', (time2 - time1) / 60.d0
call print_memory_usage()
! ---
call wall_time(time1)
allocate(c_mat(n_points_final_grid,ao_num,ao_num))
do m = 1, 3
!$OMP PARALLEL &
!$OMP DEFAULT (NONE) &
!$OMP PRIVATE (i, k, ipoint, weight1, ao_i_r, ao_k_r) &
!$OMP SHARED (aos_in_r_array_transp, aos_grad_in_r_array_transp_bis, c_mat, &
!$OMP ao_num, n_points_final_grid, final_weight_at_r_vector, m)
!$OMP DO SCHEDULE (static)
do i = 1, ao_num
do k = 1, ao_num
do ipoint = 1, n_points_final_grid
weight1 = 0.5d0 * final_weight_at_r_vector(ipoint)
ao_i_r = aos_in_r_array_transp(ipoint,i)
ao_k_r = aos_in_r_array_transp(ipoint,k)
c_mat(ipoint,k,i) = weight1 * (ao_k_r * aos_grad_in_r_array_transp_bis(ipoint,i,m) - ao_i_r * aos_grad_in_r_array_transp_bis(ipoint,k,m))
enddo
enddo
enddo
!$OMP END DO
!$OMP END PARALLEL
call dgemm( "N", "N", ao_num*ao_num, ao_num*ao_num, n_points_final_grid, -1.d0 &
, int2_grad1_u12_ao(1,1,1,m), ao_num*ao_num, c_mat(1,1,1), n_points_final_grid &
, 1.d0, tc_int_2e_ao(1,1,1,1), ao_num*ao_num)
enddo
deallocate(c_mat)
call wall_time(time2)
print*, ' wall time of non-Hermitian part of tc_int_2e_ao (min) ', (time2 - time1) / 60.d0
call print_memory_usage()
! ---
call wall_time(time1)
call sum_A_At(tc_int_2e_ao(1,1,1,1), ao_num*ao_num)
call wall_time(time2)
print*, ' lower- and upper-triangle of tc_int_2e_ao (min) ', (time2 - time1) / 60.d0
call print_memory_usage()
! ---
call wall_time(time1)
PROVIDE ao_integrals_map
!$OMP PARALLEL DEFAULT(NONE) &
!$OMP SHARED(ao_num, tc_int_2e_ao, ao_integrals_map) &
!$OMP PRIVATE(i, j, k, l)
!$OMP DO COLLAPSE(3)
do j = 1, ao_num
do l = 1, ao_num
do i = 1, ao_num
do k = 1, ao_num
! < 1:i, 2:j | 1:k, 2:l >
tc_int_2e_ao(k,i,l,j) = tc_int_2e_ao(k,i,l,j) + get_ao_two_e_integral(i, j, k, l, ao_integrals_map)
enddo
enddo
enddo
enddo
!$OMP END DO
!$OMP END PARALLEL
call wall_time(time2)
print*, ' wall time of Coulomb part of tc_int_2e_ao (min) ', (time2 - time1) / 60.d0
call print_memory_usage()
! ---
print*, ' Writing int2_grad1_u12_ao in ', trim(ezfio_filename) // '/work/int2_grad1_u12_ao'
open(unit=11, form="unformatted", file=trim(ezfio_filename)//'/work/int2_grad1_u12_ao', action="write")
call ezfio_set_work_empty(.False.)
write(11) int2_grad1_u12_ao(:,:,:,1:3)
close(11)
print*, ' Saving tc_int_2e_ao in ', trim(ezfio_filename) // '/work/ao_two_e_tc_tot'
open(unit=11, form="unformatted", file=trim(ezfio_filename)//'/work/ao_two_e_tc_tot', action="write")
call ezfio_set_work_empty(.False.)
do i = 1, ao_num
write(11) tc_int_2e_ao(:,:,:,i)
enddo
close(11)
! ----
deallocate(int2_grad1_u12_ao)
deallocate(tc_int_2e_ao)
call wall_time(time2)
print*, ' wall time for tc_int_2e_ao (min) = ', (time2-time1) / 60.d0
call print_memory_usage()
! ---
call wall_time(time1)
print*, ' wall time for TC-integrals (min) = ', (time1-time0) / 60.d0
return
end
! ---

View File

@ -0,0 +1,245 @@
! ---
subroutine get_grad1_u12_for_tc(ipoint, n_grid2, resx, resy, resz, res)
BEGIN_DOC
!
! resx(ipoint) = [grad1 u(r1,r2)]_x1
! resy(ipoint) = [grad1 u(r1,r2)]_y1
! resz(ipoint) = [grad1 u(r1,r2)]_z1
! res (ipoint) = -0.5 [grad1 u(r1,r2)]^2
!
! We use:
! grid for r1
! extra_grid for r2
!
END_DOC
include 'constants.include.F'
implicit none
integer, intent(in) :: ipoint, n_grid2
double precision, intent(out) :: resx(n_grid2), resy(n_grid2), resz(n_grid2), res(n_grid2)
integer :: jpoint, i_nucl, p, mpA, npA, opA, pp
integer :: powmax1, powmax, powmax2
double precision :: r1(3), r2(3)
double precision :: tmp, tmp1, tmp2, tmp11, tmp22
double precision :: rn(3), f1A, grad1_f1A(3), f2A, grad2_f2A(3), g12, grad1_g12(3)
double precision, allocatable :: f1A_power(:), f2A_power(:), double_p(:), g12_power(:)
r1(1) = final_grid_points(1,ipoint)
r1(2) = final_grid_points(2,ipoint)
r1(3) = final_grid_points(3,ipoint)
call grad1_j12_r1_seq(r1, n_grid2, resx, resy, resz)
do jpoint = 1, n_grid2 ! r2
res(jpoint) = -0.5d0 * (resx(jpoint) * resx(jpoint) + resy(jpoint) * resy(jpoint) + resz(jpoint) * resz(jpoint))
enddo
return
end
! ---
subroutine grad1_j12_r1_seq(r1, n_grid2, gradx, grady, gradz)
include 'constants.include.F'
implicit none
integer , intent(in) :: n_grid2
double precision, intent(in) :: r1(3)
double precision, intent(out) :: gradx(n_grid2)
double precision, intent(out) :: grady(n_grid2)
double precision, intent(out) :: gradz(n_grid2)
integer :: jpoint, i_nucl, p, mpA, npA, opA
double precision :: r2(3)
double precision :: dx, dy, dz, r12, tmp
double precision :: rn(3), f1A, grad1_f1A(3), f2A, grad2_f2A(3), g12, grad1_g12(3)
double precision :: tmp1, tmp2, dist
integer :: powmax1, powmax, powmax2
double precision, allocatable :: f1A_power(:), f2A_power(:), double_p(:), g12_power(:)
powmax1 = max(maxval(jBH_m), maxval(jBH_n))
powmax2 = maxval(jBH_o)
powmax = max(powmax1, powmax2)
allocate(f1A_power(-1:powmax), f2A_power(-1:powmax), g12_power(-1:powmax), double_p(0:powmax))
do p = 0, powmax
double_p(p) = dble(p)
enddo
f1A_power(-1) = 0.d0
f2A_power(-1) = 0.d0
g12_power(-1) = 0.d0
f1A_power(0) = 1.d0
f2A_power(0) = 1.d0
g12_power(0) = 1.d0
do jpoint = 1, n_grid2 ! r2
r2(1) = final_grid_points_extra(1,jpoint)
r2(2) = final_grid_points_extra(2,jpoint)
r2(3) = final_grid_points_extra(3,jpoint)
gradx(jpoint) = 0.d0
grady(jpoint) = 0.d0
gradz(jpoint) = 0.d0
call jBH_elem_fct_grad_alpha1(r1, r2, g12, grad1_g12)
! dist = (r1(1) - r2(1)) * (r1(1) - r2(1)) &
! + (r1(2) - r2(2)) * (r1(2) - r2(2)) &
! + (r1(3) - r2(3)) * (r1(3) - r2(3))
!
! if(dist .ge. 1d-15) then
! dist = dsqrt( dist )
!
! tmp1 = 1.d0 / (1.d0 + dist)
!
! g12 = dist * tmp1
! tmp2 = tmp1 * tmp1 / dist
! grad1_g12(1) = tmp2 * (r1(1) - r2(1))
! grad1_g12(2) = tmp2 * (r1(2) - r2(2))
! grad1_g12(3) = tmp2 * (r1(3) - r2(3))
!
! else
!
! grad1_g12(1) = 0.d0
! grad1_g12(2) = 0.d0
! grad1_g12(3) = 0.d0
! g12 = 0.d0
!
! endif
!
do p = 1, powmax2
g12_power(p) = g12_power(p-1) * g12
enddo
do i_nucl = 1, nucl_num
rn(1) = nucl_coord(i_nucl,1)
rn(2) = nucl_coord(i_nucl,2)
rn(3) = nucl_coord(i_nucl,3)
call jBH_elem_fct_grad_alpha1(r1, rn, f1A, grad1_f1A)
! dist = (r1(1) - rn(1)) * (r1(1) - rn(1)) &
! + (r1(2) - rn(2)) * (r1(2) - rn(2)) &
! + (r1(3) - rn(3)) * (r1(3) - rn(3))
! if (dist > 1.d-15) then
! dist = dsqrt( dist )
!
! tmp1 = 1.d0 / (1.d0 + dist)
!
! f1A = dist * tmp1
! tmp2 = tmp1 * tmp1 / dist
! grad1_f1A(1) = tmp2 * (r1(1) - rn(1))
! grad1_f1A(2) = tmp2 * (r1(2) - rn(2))
! grad1_f1A(3) = tmp2 * (r1(3) - rn(3))
!
! else
!
! grad1_f1A(1) = 0.d0
! grad1_f1A(2) = 0.d0
! grad1_f1A(3) = 0.d0
! f1A = 0.d0
!
! endif
call jBH_elem_fct_grad_alpha1(r2, rn, f2A, grad2_f2A)
! dist = (r2(1) - rn(1)) * (r2(1) - rn(1)) &
! + (r2(2) - rn(2)) * (r2(2) - rn(2)) &
! + (r2(3) - rn(3)) * (r2(3) - rn(3))
!
! if (dist > 1.d-15) then
! dist = dsqrt( dist )
!
! tmp1 = 1.d0 / (1.d0 + dist)
!
! f2A = dist * tmp1
! tmp2 = tmp1 * tmp1 / dist
! grad2_f2A(1) = tmp2 * (r2(1) - rn(1))
! grad2_f2A(2) = tmp2 * (r2(2) - rn(2))
! grad2_f2A(3) = tmp2 * (r2(3) - rn(3))
!
! else
!
! grad2_f2A(1) = 0.d0
! grad2_f2A(2) = 0.d0
! grad2_f2A(3) = 0.d0
! f2A = 0.d0
!
! endif
! Compute powers of f1A and f2A
do p = 1, powmax1
f1A_power(p) = f1A_power(p-1) * f1A
f2A_power(p) = f2A_power(p-1) * f2A
enddo
do p = 1, jBH_size
mpA = jBH_m(p,i_nucl)
npA = jBH_n(p,i_nucl)
opA = jBH_o(p,i_nucl)
tmp = jBH_c(p,i_nucl)
! if (dabs(tmp) <= 1.d-10) cycle
!
if(mpA .eq. npA) then
tmp = tmp * 0.5d0
endif
tmp1 = double_p(mpA) * f1A_power(mpA-1) * f2A_power(npA) + double_p(npA) * f1A_power(npA-1) * f2A_power(mpA)
tmp1 = tmp1 * g12_power(opA) * tmp
tmp2 = double_p(opA) * g12_power(opA-1) * (f1A_power(mpA) * f2A_power(npA) + f1A_power(npA) * f2A_power(mpA)) * tmp
gradx(jpoint) = gradx(jpoint) + tmp1 * grad1_f1A(1) + tmp2 * grad1_g12(1)
grady(jpoint) = grady(jpoint) + tmp1 * grad1_f1A(2) + tmp2 * grad1_g12(2)
gradz(jpoint) = gradz(jpoint) + tmp1 * grad1_f1A(3) + tmp2 * grad1_g12(3)
enddo ! p
enddo ! i_nucl
enddo ! jpoint
return
end
subroutine jBH_elem_fct_grad_alpha1(r1, r2, fct, grad1_fct)
implicit none
double precision, intent(in) :: r1(3), r2(3)
double precision, intent(out) :: fct, grad1_fct(3)
double precision :: dist, tmp1, tmp2
dist = (r1(1) - r2(1)) * (r1(1) - r2(1)) &
+ (r1(2) - r2(2)) * (r1(2) - r2(2)) &
+ (r1(3) - r2(3)) * (r1(3) - r2(3))
if(dist .ge. 1d-15) then
dist = dsqrt( dist )
tmp1 = 1.d0 / (1.d0 + dist)
fct = dist * tmp1
tmp2 = tmp1 * tmp1 / dist
grad1_fct(1) = tmp2 * (r1(1) - r2(1))
grad1_fct(2) = tmp2 * (r1(2) - r2(2))
grad1_fct(3) = tmp2 * (r1(3) - r2(3))
else
grad1_fct(1) = 0.d0
grad1_fct(2) = 0.d0
grad1_fct(3) = 0.d0
fct = 0.d0
endif
return
end
! ---

View File

@ -0,0 +1,43 @@
! ---
subroutine jBH_elem_fct_grad(alpha, r1, r2, fct, grad1_fct)
implicit none
double precision, intent(in) :: alpha, r1(3), r2(3)
double precision, intent(out) :: fct, grad1_fct(3)
double precision :: dist, tmp1, tmp2, dist_inv
dist = (r1(1) - r2(1)) * (r1(1) - r2(1)) &
+ (r1(2) - r2(2)) * (r1(2) - r2(2)) &
+ (r1(3) - r2(3)) * (r1(3) - r2(3))
if(dist .ge. 1d-15) then
dist_inv = 1.d0/dsqrt( dist )
dist = dist_inv * dist
tmp1 = 1.d0 / (1.d0 + alpha * dist)
fct = alpha * dist * tmp1
tmp2 = alpha * tmp1 * tmp1 * dist_inv
grad1_fct(1) = tmp2 * (r1(1) - r2(1))
grad1_fct(2) = tmp2 * (r1(2) - r2(2))
grad1_fct(3) = tmp2 * (r1(3) - r2(3))
else
grad1_fct(1) = 0.d0
grad1_fct(2) = 0.d0
grad1_fct(3) = 0.d0
fct = 0.d0
endif
return
end
! ---

View File

@ -0,0 +1,56 @@
! ---
program write_tc_int
implicit none
print *, ' j2e_type = ', j2e_type
print *, ' j1e_type = ', j1e_type
print *, ' env_type = ', env_type
my_grid_becke = .True.
PROVIDE tc_grid1_a tc_grid1_r
my_n_pt_r_grid = tc_grid1_r
my_n_pt_a_grid = tc_grid1_a
touch my_grid_becke my_n_pt_r_grid my_n_pt_a_grid
my_extra_grid_becke = .True.
PROVIDE tc_grid2_a tc_grid2_r
my_n_pt_r_extra_grid = tc_grid2_r
my_n_pt_a_extra_grid = tc_grid2_a
touch my_extra_grid_becke my_n_pt_r_extra_grid my_n_pt_a_extra_grid
call write_int(6, my_n_pt_r_grid, 'radial external grid over')
call write_int(6, my_n_pt_a_grid, 'angular external grid over')
call write_int(6, my_n_pt_r_extra_grid, 'radial internal grid over')
call write_int(6, my_n_pt_a_extra_grid, 'angular internal grid over')
call main()
end
! ---
subroutine main()
implicit none
PROVIDE io_tc_integ
print*, 'io_tc_integ = ', io_tc_integ
if(io_tc_integ .ne. "Write") then
print*, 'io_tc_integ != Write'
print*, io_tc_integ
stop
endif
call provide_int2_grad1_u12_ao()
call ezfio_set_tc_keywords_io_tc_integ('Read')
end
! ---

View File

@ -25,20 +25,22 @@ END_PROVIDER
! Last dimension of cholesky_ao is cholesky_ao_num
!
! https://mogp-emulator.readthedocs.io/en/latest/methods/proc/ProcPivotedCholesky.html
!
! https://doi.org/10.1016/j.apnum.2011.10.001 : Page 4, Algorithm 1
!
! https://www.diva-portal.org/smash/get/diva2:396223/FULLTEXT01.pdf
END_DOC
integer*8 :: ndim8
integer :: rank
double precision :: tau, tau2
double precision, pointer :: L(:,:), Delta(:,:)
double precision, pointer :: L(:,:)
double precision :: s
double precision :: dscale, dscale_tmp
double precision, allocatable :: D(:), Ltmp_p(:,:), Ltmp_q(:,:), D_sorted(:), Delta_col(:)
double precision, allocatable :: D(:), Ltmp_p(:,:), Ltmp_q(:,:), D_sorted(:), Delta_col(:), Delta(:,:)
integer, allocatable :: addr1(:), addr2(:)
integer*8, allocatable :: Lset(:), Dset(:), addr3(:)
integer*8, allocatable :: Lset(:), Dset(:)
logical, allocatable :: computed(:)
integer :: i,j,k,m,p,q, dj, p2, q2, ii, jj
@ -64,11 +66,8 @@ END_PROVIDER
type(c_ptr) :: c_pointer(2)
integer :: fd(2)
logical :: delta_on_disk
integer :: dgemm_block_size, nqq
double precision, allocatable :: dgemm_buffer1(:,:), dgemm_buffer2(:,:)
PROVIDE nproc
PROVIDE nproc ao_cholesky_threshold do_direct_integrals qp_max_mem
PROVIDE nucl_coord ao_two_e_integral_schwartz
call set_multiple_levels_omp(.False.)
@ -88,19 +87,8 @@ END_PROVIDER
else
PROVIDE nucl_coord ao_two_e_integral_schwartz
call set_multiple_levels_omp(.False.)
call resident_memory(mem0)
rank_max = min(ndim8,(qp_max_mem*1024_8*1024_8*1024_8/8_8)/ndim8)
call mmap(trim(ezfio_work_dir)//'cholesky_ao_tmp', (/ ndim8, rank_max /), 8, fd(1), .False., .True., c_pointer(1))
call c_f_pointer(c_pointer(1), L, (/ ndim8, rank_max /))
! Deleting the file while it is open makes the file invisible on the filesystem,
! and automatically deleted, even if the program crashes
iunit = getUnitAndOpen(trim(ezfio_work_dir)//'cholesky_ao_tmp', 'R')
close(iunit,status='delete')
if (do_direct_integrals) then
if (ao_two_e_integral(1,1,1,1) < huge(1.d0)) then
! Trigger providers inside ao_two_e_integral
@ -113,8 +101,12 @@ END_PROVIDER
tau = ao_cholesky_threshold
tau2 = tau*tau
mem = 6.d0 * memory_of_double8(ndim8) + 6.d0 * memory_of_int8(ndim8)
call check_mem(mem, irp_here)
rank = 0
allocate( D(ndim8), Lset(ndim8), Dset(ndim8), D_sorted(ndim8))
allocate( addr1(ndim8), addr2(ndim8), Delta_col(ndim8), computed(ndim8) )
call resident_memory(mem0)
call print_memory_usage()
@ -127,59 +119,58 @@ END_PROVIDER
print *, '============ ============='
rank = 0
allocate( D(ndim8), Lset(ndim8), Dset(ndim8), D_sorted(ndim8))
allocate( addr1(ndim8), addr2(ndim8), addr3(ndim8) )
!print *, 'allocate : (D(ndim8))', memory_of_int8(ndim8)
!print *, 'allocate : (Lset(ndim8))', memory_of_int8(ndim8)
!print *, 'allocate : (Dset(ndim8))', memory_of_int8(ndim8)
!print *, 'allocate : (4,addr(ndim8))', memory_of_int8(4_8*ndim8)
! 1.
k=0
i8=0
do j=1,ao_num
do i=1,ao_num
k = k+1
addr1(k) = i
addr2(k) = j
addr3(k) = (i-1)*ao_num + j
i8 = i8+1
addr1(i8) = i
addr2(i8) = j
enddo
enddo
if (do_direct_integrals) then
!$OMP PARALLEL DO DEFAULT(SHARED) PRIVATE(i8) SCHEDULE(dynamic,16)
!$OMP PARALLEL DO DEFAULT(SHARED) PRIVATE(i8) SCHEDULE(dynamic,21)
do i8=ndim8,1,-1
D(i8) = ao_two_e_integral(addr1(i8), addr2(i8), &
addr1(i8), addr2(i8))
enddo
!$OMP END PARALLEL DO
else
!$OMP PARALLEL DO DEFAULT(SHARED) PRIVATE(i8) SCHEDULE(dynamic,16)
!$OMP PARALLEL DO DEFAULT(SHARED) PRIVATE(i8) SCHEDULE(dynamic,21)
do i8=ndim8,1,-1
D(i8) = get_ao_two_e_integral(addr1(i8), addr1(i8), &
addr2(i8), addr2(i8), &
ao_integrals_map)
addr2(i8), addr2(i8), ao_integrals_map)
enddo
!$OMP END PARALLEL DO
endif
D_sorted(:) = -D(:)
call dsort_noidx_big(D_sorted,ndim8)
D_sorted(:) = dabs(D_sorted(:))
D_sorted(:) = -D_sorted(:)
Dmax = D_sorted(1)
! 2.
dscale = 1.d0
dscale_tmp = dscale*dscale*Dmax
np8=0_8
do p8=1,ndim8
if ( dscale_tmp*D(p8) > tau2 ) then
if ( Dmax*D(p8) >= tau2 ) then
np8 = np8+1_8
Lset(np8) = p8
endif
enddo
np = np8
if (np8 > ndim8) stop 'np>ndim8'
np = int(np8,4)
if (np <= 0) stop 'np<=0'
rank_max = min(np,20*elec_num*elec_num)
call mmap(trim(ezfio_work_dir)//'cholesky_ao_tmp', (/ ndim8, rank_max /), 8, fd(1), .False., .True., c_pointer(1))
call c_f_pointer(c_pointer(1), L, (/ ndim8, rank_max /))
! Deleting the file while it is open makes the file invisible on the filesystem,
! and automatically deleted, even if the program crashes
iunit = getUnitAndOpen(trim(ezfio_work_dir)//'cholesky_ao_tmp', 'R')
close(iunit,status='delete')
! 3.
N = 0
@ -187,82 +178,66 @@ END_PROVIDER
! 4.
i = 0
mem = memory_of_double(np) & ! Delta(np,nq)
+ (np+1)*memory_of_double(block_size) ! Ltmp_p(np,block_size) + Ltmp_q(nq,block_size)
! call check_mem(mem)
! 5.
do while ( (Dmax > tau).and.(rank*1_8 < min(ndim8,rank_max)) )
do while ( (Dmax > tau).and.(np > 0) )
! a.
i = i+1
! Inrease s until the arrays fit in memory
s = 0.01d0
block_size = max(N,24)
! Determine nq so that Delta fits in memory
s = 0.1d0
Dmin = max(s*Dmax,tau)
do nq=2,np-1
if (D_sorted(nq) < Dmin) exit
enddo
do while (.True.)
! b.
Dmin = max(s*Dmax,tau)
mem = mem0 &
+ np*memory_of_double(nq) & ! Delta(np,nq)
+ (np+nq)*memory_of_double(block_size) ! Ltmp_p(np,block_size) + Ltmp_q(nq,block_size)
! c.
if (mem > qp_max_mem*0.5d0) then
Dmin = D_sorted(nq/2)
do ii=nq/2,np-1
if (D_sorted(ii) < Dmin) then
nq = ii
exit
endif
enddo
else
exit
endif
enddo
!call print_memory_usage
!print *, 'np, nq, Predicted memory: ', np, nq, mem
if (nq <= 0) then
print *, nq
stop 'bug in cholesky: nq <= 0'
endif
Dmin = D_sorted(nq)
nq=0
do p=1,np
if ( D(Lset(p)) > Dmin ) then
if ( D(Lset(p)) >= Dmin ) then
nq = nq+1
Dset(nq) = Lset(p)
endif
enddo
mem = mem0 &
+ np*memory_of_double(nq)
!print *, 'mem = ', mem
if (mem > qp_max_mem/2) then
s = s*2.d0
else
exit
endif
if ((s > 1.d0).or.(nq == 0)) then
call print_memory_usage()
print *, 'Required peak memory: ', mem, 'Gb'
call resident_memory(mem)
print *, 'Already used memory: ', mem, 'Gb'
print *, 'Not enough memory. Reduce cholesky threshold'
stop -1
endif
if (s > 0.1d0) then
exit
endif
enddo
! d., e.
mem = mem0 &
+ memory_of_int(nq) &! computed(nq)
+ np*memory_of_int(nq) &! computed(nq)
+ memory_of_double(np) &! Delta_col(np)
+ 7*memory_of_double8(ndim8) &! D, Lset, Dset, D_sorted, addr[1-3]
+ np*memory_of_double(nq) &! Delta(np,nq)
+ (np+nq)*memory_of_double(block_size) ! Ltmp_p(np,block_size) + Ltmp_q(nq,block_size)
if (mem > qp_max_mem) then
call mmap(trim(ezfio_work_dir)//'cholesky_delta', (/ np*1_8, nq*1_8 /), 8, fd(2), .False., .True., c_pointer(2))
call c_f_pointer(c_pointer(2), Delta, (/ np, nq /))
! Deleting the file while it is open makes the file invisible on the filesystem,
! and automatically deleted, even if the program crashes
iunit = getUnitAndOpen(trim(ezfio_work_dir)//'cholesky_delta', 'R')
close(iunit,status='delete')
delta_on_disk = .True.
else
allocate(Delta(np,nq))
delta_on_disk = .False.
endif
!print *, delta_on_disk
allocate(Delta_col(np))
allocate(Ltmp_p(np,block_size), stat=ierr)
!print *, 'allocate : Ltmp_p(np,block_size)', memory_of_double8(np*block_size*1_8), np, block_size
if (ierr /= 0) then
call print_memory_usage()
@ -271,7 +246,6 @@ END_PROVIDER
endif
allocate(Ltmp_q(nq,block_size), stat=ierr)
!print *, 'allocate : Ltmp_q(nq,block_size)', memory_of_double8(nq*block_size*1_8), nq, block_size
if (ierr /= 0) then
call print_memory_usage()
@ -280,11 +254,9 @@ END_PROVIDER
endif
allocate(computed(nq))
computed(:) = .False.
computed(1:nq) = .False.
!print *, 'N, rank, block_size', N, rank, block_size
!$OMP PARALLEL DEFAULT(SHARED) PRIVATE(k,p,q)
do k=1,N
!$OMP DO
@ -302,50 +274,11 @@ END_PROVIDER
!$OMP BARRIER
!$OMP END PARALLEL
PROVIDE nproc
if (N>0) then
if (delta_on_disk) then
! Blocking improves I/O performance
dgemm_block_size = nproc*4
allocate (dgemm_buffer1(np,dgemm_block_size))
allocate (dgemm_buffer2(dgemm_block_size,N))
do jj=1,nq,dgemm_block_size
nqq = min(nq, jj+dgemm_block_size-1) - jj + 1
!$OMP PARALLEL DO DEFAULT(SHARED) PRIVATE(q,ii)
do ii=1,N
do q=jj,jj+nqq-1
dgemm_buffer2(q-jj+1,ii) = Ltmp_q(q,ii)
enddo
enddo
!$OMP END PARALLEL DO
call dgemm('N', 'T', np, nqq, N, 1.d0, &
Ltmp_p, np, dgemm_buffer2, dgemm_block_size, 0.d0, dgemm_buffer1, np)
!$OMP PARALLEL DO DEFAULT(SHARED) PRIVATE(q)
do q=jj,jj+nqq-1
Delta(:,q) = - dgemm_buffer1(:, q-jj+1)
enddo
!$OMP END PARALLEL DO
enddo
deallocate(dgemm_buffer1, dgemm_buffer2)
else
call dgemm('N', 'T', np, nq, N, -1.d0, &
Ltmp_p(1,1), np, Ltmp_q(1,1), nq, 0.d0, Delta, np)
endif
else
!$OMP PARALLEL DO DEFAULT(SHARED) PRIVATE(q,j)
@ -368,48 +301,19 @@ END_PROVIDER
do j=1,nq
if ( (Qmax <= Dmin).or.(N+j*1_8 > ndim8) ) exit
! i.
rank = N+j
if (rank == rank_max) then
print *, 'cholesky: rank_max reached'
exit
endif
if (iblock == block_size) then
if (delta_on_disk) then
! Blocking improves I/O performance
dgemm_block_size = nproc*4
allocate (dgemm_buffer1(np,dgemm_block_size))
allocate (dgemm_buffer2(dgemm_block_size,block_size))
do jj=1,nq,dgemm_block_size
nqq = min(nq, jj+dgemm_block_size-1) - jj + 1
!$OMP PARALLEL DO DEFAULT(SHARED) PRIVATE(q,ii)
do ii=1,block_size
do q=jj,jj+nqq-1
dgemm_buffer2(q-jj+1,ii) = Ltmp_q(q,ii)
enddo
enddo
!$OMP END PARALLEL DO
call dgemm('N', 'T', np, nqq, block_size, 1.d0, &
Ltmp_p(1,1), np, dgemm_buffer2, dgemm_block_size, 0.d0, dgemm_buffer1, np)
!$OMP PARALLEL DO DEFAULT(SHARED) PRIVATE(q)
do q=jj,jj+nqq-1
Delta(:,q) = Delta(:,q) - dgemm_buffer1(:, q-jj+1)
enddo
!$OMP END PARALLEL DO
enddo
deallocate(dgemm_buffer1, dgemm_buffer2)
else
call dgemm('N','T',np,nq,block_size,-1.d0, &
Ltmp_p, np, Ltmp_q, nq, 1.d0, Delta, np)
endif
iblock = 0
endif
@ -438,26 +342,25 @@ END_PROVIDER
if (do_direct_integrals) then
!$OMP PARALLEL DO PRIVATE(k) SCHEDULE(dynamic,21)
do k=1,np
Delta_col(k) = 0.d0
if (.not.ao_two_e_integral_zero( addr1(Lset(k)), addr1(Dset(m)),&
addr2(Lset(k)), addr2(Dset(m)) ) ) then
Delta_col(k) = &
ao_two_e_integral(addr1(Lset(k)), addr2(Lset(k)),&
addr1(Dset(m)), addr2(Dset(m)))
else
Delta_col(k) = 0.d0
endif
enddo
!$OMP END PARALLEL DO
else
PROVIDE ao_integrals_map
!$OMP PARALLEL DO PRIVATE(k) SCHEDULE(dynamic,21)
do k=1,np
Delta_col(k) = 0.d0
if (.not.ao_two_e_integral_zero( addr1(Lset(k)), addr1(Dset(m)),&
addr2(Lset(k)), addr2(Dset(m)) ) ) then
Delta_col(k) = &
get_ao_two_e_integral( addr1(Lset(k)), addr1(Dset(m)),&
addr2(Lset(k)), addr2(Dset(m)), ao_integrals_map)
else
Delta_col(k) = 0.d0
endif
enddo
!$OMP END PARALLEL DO
@ -507,35 +410,28 @@ END_PROVIDER
print '(I10, 4X, ES12.3)', rank, Qmax
deallocate(Delta_col)
deallocate(Ltmp_p)
deallocate(Ltmp_q)
deallocate(computed)
if (delta_on_disk) then
call munmap( (/ np*1_8, nq*1_8 /), 8, fd(2), c_pointer(2) )
else
deallocate(Delta)
endif
! i.
N = rank
! j.
Dmax = D(Lset(1))
do p=1,np
Dmax = max(Dmax, D(Lset(p)))
enddo
D_sorted(:) = -D(:)
call dsort_noidx_big(D_sorted,ndim8)
D_sorted(:) = -D_sorted(:)
Dmax = D_sorted(1)
dscale = 1.d0
dscale_tmp = dscale*dscale*Dmax
np8=0_8
do p8=1,ndim8
if ( dscale_tmp*D(p8) > tau2 ) then
if ( Dmax*D(p8) >= tau2 ) then
np8 = np8+1_8
Lset(np8) = p8
endif
enddo
np = np8
np = int(np8,4)
enddo
@ -543,8 +439,11 @@ END_PROVIDER
print *, '============ ============='
print *, ''
deallocate( D, Lset, Dset, D_sorted )
deallocate( addr1, addr2, Delta_col, computed )
allocate(cholesky_ao(ao_num,ao_num,rank), stat=ierr)
!print *, 'allocate : cholesky_ao(ao_num,ao_num,rank)', memory_of_double8(ao_num*ao_num*rank*1_8)
if (ierr /= 0) then
call print_memory_usage()
@ -556,7 +455,7 @@ END_PROVIDER
!$OMP PARALLEL DO PRIVATE(k,j)
do k=1,rank
do j=1,ao_num
cholesky_ao(1:ao_num,j,k) = L((j-1)*ao_num+1:j*ao_num,k)
cholesky_ao(1:ao_num,j,k) = L((j-1_8)*ao_num+1_8:1_8*j*ao_num,k)
enddo
enddo
!$OMP END PARALLEL DO
@ -581,5 +480,6 @@ END_PROVIDER
call wall_time(wall1)
print*,'Time to provide AO cholesky vectors = ',(wall1-wall0)/60.d0, ' min'
END_PROVIDER

View File

@ -1,2 +1,3 @@
gpu
hartree_fock
utils_cc

View File

@ -1,4 +1,5 @@
subroutine run_ccsd_space_orb
use gpu
implicit none
@ -9,16 +10,28 @@ subroutine run_ccsd_space_orb
double precision :: uncorr_energy,energy, max_elem, max_r, max_r1, max_r2,ta,tb
logical :: not_converged
double precision, allocatable :: t2(:,:,:,:), r2(:,:,:,:), tau(:,:,:,:), tau_x(:,:,:,:)
double precision, allocatable :: t1(:,:), r1(:,:)
double precision, allocatable :: H_oo(:,:), H_vv(:,:), H_vo(:,:)
type(gpu_double4) :: t2, r2, tau, tau_x
type(gpu_double2) :: t1, r1
type(gpu_double2) :: H_oo, H_vv, H_vo
type(gpu_double2) :: d_cc_space_f_oo, d_cc_space_f_vo
type(gpu_double2) :: d_cc_space_f_ov, d_cc_space_f_vv
type(gpu_double3) :: d_cc_space_v_oo_chol, d_cc_space_v_vo_chol
type(gpu_double3) :: d_cc_space_v_ov_chol, d_cc_space_v_vv_chol
type(gpu_double4) :: d_cc_space_v_oovv, d_cc_space_v_voov, d_cc_space_v_ovov
type(gpu_double4) :: d_cc_space_v_oovo, d_cc_space_v_vooo, d_cc_space_v_oooo
type(gpu_double4) :: d_cc_space_v_vvoo, d_cc_space_v_ovvo, d_cc_space_v_ovoo
double precision, allocatable :: all_err(:,:), all_t(:,:)
integer, allocatable :: list_occ(:), list_vir(:)
integer(bit_kind) :: det(N_int,2)
integer :: nO, nV, nOa, nVa
if (do_ao_cholesky) then
call set_multiple_levels_omp(.False.)
if (do_mo_cholesky) then
PROVIDE cholesky_mo_transp
FREE cholesky_ao
else
@ -49,11 +62,77 @@ subroutine run_ccsd_space_orb
!print*,'occ',list_occ
!print*,'vir',list_vir
allocate(t2(nO,nO,nV,nV), r2(nO,nO,nV,nV))
allocate(tau(nO,nO,nV,nV))
allocate(tau_x(nO,nO,nV,nV))
allocate(t1(nO,nV), r1(nO,nV))
allocate(H_oo(nO,nO), H_vv(nV,nV), H_vo(nV,nO))
! GPU arrays
call gpu_allocate(d_cc_space_f_oo, nO, nO)
call gpu_allocate(d_cc_space_f_vo, nV, nO)
call gpu_allocate(d_cc_space_f_ov, nO, nV)
call gpu_allocate(d_cc_space_f_vv, nV, nV)
call gpu_upload(cc_space_f_oo, d_cc_space_f_oo)
call gpu_upload(cc_space_f_vo, d_cc_space_f_vo)
call gpu_upload(cc_space_f_ov, d_cc_space_f_ov)
call gpu_upload(cc_space_f_vv, d_cc_space_f_vv)
! FREE cc_space_f_oo
! FREE cc_space_f_vo
! FREE cc_space_f_vv
if (do_mo_cholesky) then
call gpu_allocate(d_cc_space_v_oo_chol, cholesky_mo_num, nO, nO)
call gpu_allocate(d_cc_space_v_ov_chol, cholesky_mo_num, nO, nV)
call gpu_allocate(d_cc_space_v_vo_chol, cholesky_mo_num, nV, nO)
call gpu_allocate(d_cc_space_v_vv_chol, cholesky_mo_num, nV, nV)
call gpu_upload(cc_space_v_oo_chol, d_cc_space_v_oo_chol)
call gpu_upload(cc_space_v_ov_chol, d_cc_space_v_ov_chol)
call gpu_upload(cc_space_v_vo_chol, d_cc_space_v_vo_chol)
call gpu_upload(cc_space_v_vv_chol, d_cc_space_v_vv_chol)
! FREE cc_space_v_oo_chol
! FREE cc_space_v_ov_chol
! FREE cc_space_v_vo_chol
! FREE cc_space_v_vv_chol
endif
call gpu_allocate(d_cc_space_v_oovv, nO, nO, nV, nV)
call gpu_allocate(d_cc_space_v_voov, nV, nO, nO, nV)
call gpu_allocate(d_cc_space_v_ovov, nO, nV, nO, nV)
call gpu_allocate(d_cc_space_v_oovo, nO, nO, nV, nO)
call gpu_allocate(d_cc_space_v_ovvo, nO, nV, nV, nO)
call gpu_allocate(d_cc_space_v_vooo, nV, nO, nO, nO)
call gpu_allocate(d_cc_space_v_oooo, nO, nO, nO, nO)
call gpu_allocate(d_cc_space_v_vvoo, nV, nV, nO, nO)
call gpu_allocate(d_cc_space_v_ovoo, nO, nV, nO, nO)
call gpu_upload(cc_space_v_oovv, d_cc_space_v_oovv)
call gpu_upload(cc_space_v_voov, d_cc_space_v_voov)
call gpu_upload(cc_space_v_ovov, d_cc_space_v_ovov)
call gpu_upload(cc_space_v_oovo, d_cc_space_v_oovo)
call gpu_upload(cc_space_v_ovvo, d_cc_space_v_ovvo)
call gpu_upload(cc_space_v_vooo, d_cc_space_v_vooo)
call gpu_upload(cc_space_v_oooo, d_cc_space_v_oooo)
call gpu_upload(cc_space_v_vvoo, d_cc_space_v_vvoo)
call gpu_upload(cc_space_v_ovoo, d_cc_space_v_ovoo)
! FREE cc_space_v_voov
! FREE cc_space_v_ovov
! FREE cc_space_v_oovo
! FREE cc_space_v_oovv
! FREE cc_space_v_vooo
! FREE cc_space_v_oooo
! FREE cc_space_v_vvoo
! FREE cc_space_v_ovvo
! FREE cc_space_v_ovoo
call gpu_allocate(t2, nO,nO,nV,nV)
call gpu_allocate(r2, nO,nO,nV,nV)
call gpu_allocate(tau, nO,nO,nV,nV)
call gpu_allocate(tau_x, nO,nO,nV,nV)
call gpu_allocate(t1, nO,nV)
call gpu_allocate(r1, nO,nV)
call gpu_allocate(H_oo, nO, nO)
call gpu_allocate(H_vo, nV, nO)
call gpu_allocate(H_vv, nV, nV)
if (cc_update_method == 'diis') then
double precision :: rss, diis_mem, extra_mem
@ -95,14 +174,22 @@ subroutine run_ccsd_space_orb
endif
! Init
call guess_t1(nO,nV,cc_space_f_o,cc_space_f_v,cc_space_f_ov,t1)
call guess_t2(nO,nV,cc_space_f_o,cc_space_f_v,cc_space_v_oovv,t2)
call update_tau_space(nO,nV,t1,t2,tau)
double precision, allocatable :: h_t1(:,:), h_t2(:,:,:,:)
allocate(h_t1(nO,nV), h_t2(nO,nO,nV,nV))
call guess_t1(nO,nV,cc_space_f_o,cc_space_f_v,cc_space_f_ov,h_t1)
call gpu_upload(h_t1, t1)
call guess_t2(nO,nV,cc_space_f_o,cc_space_f_v,cc_space_v_oovv,h_t2)
call gpu_upload(h_t2, t2)
call update_tau_space(nO,nV,h_t1,t1,t2,tau)
call update_tau_x_space(nO,nV,tau,tau_x)
!print*,'hf_energy', hf_energy
call det_energy(det,uncorr_energy)
print*,'Det energy', uncorr_energy
call ccsd_energy_space_x(nO,nV,tau_x,t1,energy)
call ccsd_energy_space_x(nO,nV,d_cc_space_v_oovv,d_cc_space_f_vo,tau_x,t1,energy)
print*,'Guess energy', uncorr_energy+energy, energy
nb_iter = 0
@ -118,43 +205,45 @@ subroutine run_ccsd_space_orb
do while (not_converged)
! Residue
if (do_ao_cholesky) then
! if (.False.) then
call compute_H_oo_chol(nO,nV,tau_x,H_oo)
call compute_H_vv_chol(nO,nV,tau_x,H_vv)
call compute_H_vo_chol(nO,nV,t1,H_vo)
if (do_mo_cholesky) then
call compute_H_oo_chol(nO,nV,tau_x,d_cc_space_f_oo, d_cc_space_v_ov_chol,d_cc_space_v_vo_chol,H_oo)
call compute_H_vv_chol(nO,nV,tau_x,d_cc_space_f_vv, d_cc_space_v_ov_chol,H_vv)
call compute_H_vo_chol(nO,nV,t1,d_cc_space_f_vo, d_cc_space_v_ov_chol,d_cc_space_v_vo_chol, H_vo)
call compute_r1_space_chol(nO,nV,t1,t2,tau,H_oo,H_vv,H_vo,r1,max_r1)
call compute_r2_space_chol(nO,nV,t1,t2,tau,H_oo,H_vv,H_vo,r2,max_r2)
call compute_r1_space_chol(nO,nV,t1,t2,tau,H_oo,H_vv,H_vo,r1,max_r1,d_cc_space_f_ov,d_cc_space_f_vo, &
d_cc_space_v_voov, d_cc_space_v_ovov, d_cc_space_v_oovo, d_cc_space_v_vo_chol, d_cc_space_v_vv_chol)
call compute_r2_space_chol(nO,nV,t1,t2,tau,H_oo,H_vv, &
d_cc_space_v_oovv, d_cc_space_v_vooo, d_cc_space_v_oooo, d_cc_space_v_oovo, d_cc_space_v_ovvo, d_cc_space_v_ovoo, &
d_cc_space_v_ovov, d_cc_space_v_vvoo, d_cc_space_v_oo_chol, d_cc_space_v_ov_chol, d_cc_space_v_vo_chol, d_cc_space_v_vv_chol, &
d_cc_space_f_vo, &
r2, max_r2)
else
call compute_H_oo(nO,nV,t1,t2,tau,H_oo)
call compute_H_vv(nO,nV,t1,t2,tau,H_vv)
call compute_H_vo(nO,nV,t1,t2,H_vo)
call compute_H_oo(nO,nV,t1%f,t2%f,tau%f,H_oo%f)
call compute_H_vv(nO,nV,t1%f,t2%f,tau%f,H_vv%f)
call compute_H_vo(nO,nV,t1%f,t2%f,H_vo%f)
call compute_r1_space(nO,nV,t1,t2,tau,H_oo,H_vv,H_vo,r1,max_r1)
call compute_r2_space(nO,nV,t1,t2,tau,H_oo,H_vv,H_vo,r2,max_r2)
call compute_r1_space(nO,nV,t1%f,t2%f,tau%f,H_oo%f,H_vv%f,H_vo%f,r1%f,max_r1)
call compute_r2_space(nO,nV,t1%f,t2%f,tau%f,H_oo%f,H_vv%f,H_vo%f,r2%f,max_r2)
endif
max_r = max(max_r1,max_r2)
! Update
if (cc_update_method == 'diis') then
!call update_t_ccsd(nO,nV,nb_iter,f_o,f_v,r1,r2,t1,t2,all_err1,all_err2,all_t1,all_t2)
!call update_t_ccsd_diis(nO,nV,nb_iter,f_o,f_v,r1,r2,t1,t2,all_err1,all_err2,all_t1,all_t2)
call update_t_ccsd_diis_v3(nO,nV,nb_iter,cc_space_f_o,cc_space_f_v,r1,r2,t1,t2,all_err,all_t)
call update_t_ccsd_diis_v3(nO,nV,nb_iter,cc_space_f_o,cc_space_f_v,r1%f,r2%f,t1%f,t2%f,all_err,all_t)
! Standard update as T = T - Delta
elseif (cc_update_method == 'none') then
call update_t1(nO,nV,cc_space_f_o,cc_space_f_v,r1,t1)
call update_t2(nO,nV,cc_space_f_o,cc_space_f_v,r2,t2)
call update_t1(nO,nV,cc_space_f_o,cc_space_f_v,r1%f,t1%f)
call update_t2(nO,nV,cc_space_f_o,cc_space_f_v,r2%f,t2%f)
else
print*,'Unkown cc_method_method: '//cc_update_method
endif
call update_tau_space(nO,nV,t1,t2,tau)
call update_tau_space(nO,nV,t1%f,t1,t2,tau)
call update_tau_x_space(nO,nV,tau,tau_x)
! Energy
call ccsd_energy_space_x(nO,nV,tau_x,t1,energy)
call ccsd_energy_space_x(nO,nV,d_cc_space_v_oovv,d_cc_space_f_vo,tau_x,t1,energy)
write(*,'(A3,I6,A3,F18.12,A3,F16.12,A3,ES10.2,A3,ES10.2,A2)') ' | ',nb_iter,' | ', uncorr_energy+energy,' | ', energy,' | ', max_r1,' | ', max_r2,' |'
nb_iter = nb_iter + 1
@ -179,8 +268,8 @@ subroutine run_ccsd_space_orb
print*,''
if (write_amplitudes) then
call write_t1(nO,nV,t1)
call write_t2(nO,nV,t2)
call write_t1(nO,nV,t1%f)
call write_t2(nO,nV,t2%f)
call ezfio_set_utils_cc_io_amplitudes('Read')
endif
@ -189,7 +278,14 @@ subroutine run_ccsd_space_orb
deallocate(all_err,all_t)
endif
deallocate(H_vv,H_oo,H_vo,r1,r2,tau)
call gpu_deallocate(H_oo)
call gpu_deallocate(H_vv)
call gpu_deallocate(H_vo)
call gpu_deallocate(r1)
call gpu_deallocate(r2)
call gpu_deallocate(tau)
call gpu_deallocate(tau_x)
! CCSD(T)
double precision :: e_t, e_t_err
@ -197,28 +293,14 @@ subroutine run_ccsd_space_orb
if (cc_par_t .and. elec_alpha_num + elec_beta_num > 2) then
! Dumb way
!call wall_time(ta)
!call ccsd_par_t_space(nO,nV,t1,t2,e_t)
!call wall_time(tb)
!print*,'Time: ',tb-ta, ' s'
!print*,''
!write(*,'(A15,F18.12,A3)') ' E(CCSD(T)) = ', uncorr_energy + energy + e_t, ' Ha'
!write(*,'(A15,F18.12,A3)') ' E(T) = ', e_t, ' Ha'
!write(*,'(A15,F18.12,A3)') ' Correlation = ', energy + e_t, ' Ha'
!print*,''
! New
e_t = uncorr_energy + energy ! For print in (T) call
e_t_err = 0.d0
print*,'Computing (T) correction...'
call wall_time(ta)
! call ccsd_par_t_space_v3(nO,nV,t1,t2,cc_space_f_o,cc_space_f_v &
! ,cc_space_v_vvvo,cc_space_v_vvoo,cc_space_v_vooo,e_t)
call ccsd_par_t_space_stoch(nO,nV,t1,t2,cc_space_f_o,cc_space_f_v &
call ccsd_par_t_space_stoch(nO,nV,t1%f,t2%f,cc_space_f_o,cc_space_f_v &
,cc_space_v_vvvo,cc_space_v_vvoo,cc_space_v_vooo,e_t, e_t_err)
call wall_time(tb)
@ -233,168 +315,161 @@ subroutine run_ccsd_space_orb
call save_energy(uncorr_energy + energy, e_t)
deallocate(t1,t2)
deallocate(h_t1, h_t2)
if (do_mo_cholesky) then
call gpu_deallocate(d_cc_space_v_oo_chol)
call gpu_deallocate(d_cc_space_v_ov_chol)
call gpu_deallocate(d_cc_space_v_vo_chol)
call gpu_deallocate(d_cc_space_v_vv_chol)
endif
call gpu_deallocate(d_cc_space_v_oovv)
call gpu_deallocate(d_cc_space_v_voov)
call gpu_deallocate(d_cc_space_v_ovov)
call gpu_deallocate(d_cc_space_v_oovo)
call gpu_deallocate(d_cc_space_v_ovvo)
call gpu_deallocate(d_cc_space_v_vooo)
call gpu_deallocate(d_cc_space_v_oooo)
call gpu_deallocate(d_cc_space_v_vvoo)
call gpu_deallocate(d_cc_space_v_ovoo)
call gpu_deallocate(d_cc_space_f_oo)
call gpu_deallocate(d_cc_space_f_vo)
call gpu_deallocate(d_cc_space_f_ov)
call gpu_deallocate(d_cc_space_f_vv)
call gpu_deallocate(t1)
call gpu_deallocate(t2)
end
! Energy
subroutine ccsd_energy_space(nO,nV,tau,t1,energy)
subroutine ccsd_energy_space_x(nO,nV,d_cc_space_v_oovv,d_cc_space_f_vo,tau_x,t1,energy)
use gpu
implicit none
integer, intent(in) :: nO, nV
double precision, intent(in) :: tau(nO,nO,nV,nV)
double precision, intent(in) :: t1(nO,nV)
type(gpu_double4), intent(in) :: tau_x, d_cc_space_v_oovv
type(gpu_double2), intent(in) :: t1, d_cc_space_f_vo
double precision, intent(out) :: energy
! internal
integer :: i,j,a,b
double precision :: e
energy = 0d0
!$omp parallel &
!$omp shared(nO,nV,energy,tau,t1,&
!$omp cc_space_f_vo,cc_space_w_oovv) &
!$omp private(i,j,a,b,e) &
!$omp default(none)
e = 0d0
!$omp do
do a = 1, nV
do i = 1, nO
e = e + 2d0 * cc_space_f_vo(a,i) * t1(i,a)
enddo
enddo
!$omp end do nowait
!$omp do
do b = 1, nV
do a = 1, nV
do j = 1, nO
do i = 1, nO
e = e + tau(i,j,a,b) * cc_space_w_oovv(i,j,a,b)
enddo
enddo
enddo
enddo
!$omp end do nowait
!$omp critical
energy = energy + e
!$omp end critical
!$omp end parallel
type(gpu_stream) :: s1, s2
call gpu_stream_create(s1)
call gpu_stream_create(s2)
end
call gpu_set_stream(blas_handle,s1)
call gpu_ddot(blas_handle, nO*nV, d_cc_space_f_vo%f(1,1), 1, t1%f(1,1), 1, e)
subroutine ccsd_energy_space_x(nO,nV,tau_x,t1,energy)
call gpu_set_stream(blas_handle,s2)
call gpu_ddot_64(blas_handle, nO*nO*nV*nV*1_8, tau_x%f(1,1,1,1), 1_8, d_cc_space_v_oovv%f(1,1,1,1), 1_8, energy)
call gpu_set_stream(blas_handle,gpu_default_stream)
implicit none
call gpu_synchronize()
call gpu_stream_destroy(s1)
call gpu_stream_destroy(s2)
integer, intent(in) :: nO, nV
double precision, intent(in) :: tau_x(nO,nO,nV,nV)
double precision, intent(in) :: t1(nO,nV)
double precision, intent(out) :: energy
! internal
integer :: i,j,a,b
double precision :: e
energy = 0d0
!$omp parallel &
!$omp shared(nO,nV,energy,tau_x,t1,&
!$omp cc_space_f_vo,cc_space_v_oovv) &
!$omp private(i,j,a,b,e) &
!$omp default(none)
e = 0d0
!$omp do
do a = 1, nV
do i = 1, nO
e = e + 2d0 * cc_space_f_vo(a,i) * t1(i,a)
enddo
enddo
!$omp end do nowait
!$omp do
do b = 1, nV
do a = 1, nV
do j = 1, nO
do i = 1, nO
e = e + tau_x(i,j,a,b) * cc_space_v_oovv(i,j,a,b)
enddo
enddo
enddo
enddo
!$omp end do nowait
!$omp critical
energy = energy + e
!$omp end critical
!$omp end parallel
energy = energy + 2.d0*e
end
! Tau
subroutine update_tau_space(nO,nV,t1,t2,tau)
subroutine update_tau_space(nO,nV,h_t1,t1,t2,tau)
use gpu
implicit none
! in
integer, intent(in) :: nO, nV
double precision, intent(in) :: t1(nO,nV), t2(nO,nO,nV,nV)
double precision, intent(in) :: h_t1(nO,nV)
type(gpu_double2), intent(in) :: t1
type(gpu_double4), intent(in) :: t2
! out
double precision, intent(out) :: tau(nO,nO,nV,nV)
type(gpu_double4) :: tau
! internal
integer :: i,j,a,b
type(gpu_stream) :: stream(nV)
!$OMP PARALLEL &
!$OMP SHARED(nO,nV,tau,t2,t1) &
!$OMP SHARED(nO,nV,tau,t2,t1,h_t1,stream,blas_handle) &
!$OMP PRIVATE(i,j,a,b) &
!$OMP DEFAULT(NONE)
!$OMP DO
do b = 1, nV
do a = 1, nV
do j = 1, nO
do i = 1, nO
tau(i,j,a,b) = t2(i,j,a,b) + t1(i,a) * t1(j,b)
enddo
enddo
do b=1,nV
call gpu_stream_create(stream(b))
call gpu_set_stream(blas_handle,stream(b))
do j=1,nO
call gpu_dgeam(blas_handle, 'N', 'N', nO, nV, &
1.d0, t2%f(1,j,1,b), nO*nO, &
h_t1(j,b), t1%f(1,1), nO, &
tau%f(1,j,1,b), nO*nO)
enddo
enddo
!$OMP END DO
!$OMP END PARALLEL
call gpu_synchronize()
do b=1,nV
call gpu_stream_destroy(stream(b))
enddo
call gpu_set_stream(blas_handle,gpu_default_stream)
end
subroutine update_tau_x_space(nO,nV,tau,tau_x)
use gpu
implicit none
! in
integer, intent(in) :: nO, nV
double precision, intent(in) :: tau(nO,nO,nV,nV)
type(gpu_double4), intent(in) :: tau
! out
double precision, intent(out) :: tau_x(nO,nO,nV,nV)
type(gpu_double4) :: tau_x
! internal
integer :: i,j,a,b
type(gpu_stream) :: stream(nV)
do a=1,nV
call gpu_stream_create(stream(a))
enddo
!$OMP PARALLEL &
!$OMP SHARED(nO,nV,tau,tau_x) &
!$OMP PRIVATE(i,j,a,b) &
!$OMP SHARED(nO,nV,tau,tau_x,stream,blas_handle) &
!$OMP PRIVATE(a,b) &
!$OMP DEFAULT(NONE)
!$OMP DO
do b = 1, nV
do a = 1, nV
do j = 1, nO
do i = 1, nO
tau_x(i,j,a,b) = 2.d0*tau(i,j,a,b) - tau(i,j,b,a)
enddo
enddo
do b=1,nV
do a=1,nV
call gpu_set_stream(blas_handle,stream(a))
call gpu_dgeam(blas_handle, 'N', 'N', nO, nO, &
2.d0, tau%f(1,1,a,b), nO, &
-1.d0, tau%f(1,1,b,a), nO, &
tau_x%f(1,1,a,b), nO)
enddo
enddo
!$OMP END DO
!$OMP END PARALLEL
call gpu_set_stream(blas_handle,gpu_default_stream)
call gpu_synchronize()
do b=1,nV
call gpu_stream_destroy(stream(b))
enddo
end
! R1

File diff suppressed because it is too large Load Diff

1
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@ -0,0 +1 @@
gpu_arch

6
src/gpu/README.rst Normal file
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@ -0,0 +1,6 @@
===
gpu
===
Bindings for GPU routines (architecture independent).
Architecture-dependent files are in gpu_arch.

41
src/gpu/gpu.h Normal file
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@ -0,0 +1,41 @@
#include <stdint.h>
int gpu_ndevices();
void gpu_set_device(int32_t i);
void gpu_allocate(void** ptr, const int64_t n);
void gpu_free(void** ptr);
void gpu_upload(const void* cpu_ptr, void* gpu_ptr, const int64_t n);
void gpu_download(const void* gpu_ptr, void* cpu_ptr, const int64_t n);
void gpu_copy(const void* gpu_ptr_src, void* gpu_ptr_dest, const int64_t n);
void gpu_stream_create(void** ptr);
void gpu_stream_destroy(void** ptr);
void gpu_set_stream(void* handle, void* stream);
void gpu_synchronize();
void gpu_blas_create(void** handle);
void gpu_blas_destroy(void** handle);
void gpu_ddot(const void* handle, const int64_t n, const double* x, const int64_t incx, const double* y, const int64_t incy, double* result);
void gpu_sdot(const void* handle, const int64_t n, const float* x, const int64_t incx, const float* y, const int64_t incy, float* result);
void gpu_dgemv(const void* handle, const char transa, const int64_t m, const int64_t n, const double* alpha,
const double* a, const int64_t lda, const double* x, const int64_t incx, const double* beta, double* y, const int64_t incy);
void gpu_sgemv(const void* handle, const char transa, const int64_t m, const int64_t n, const float* alpha,
const float* a, const int64_t lda, const float* x, const int64_t incx, const float* beta, float* y, const int64_t incy);
void gpu_dgemm(const void* handle, const char transa, const char transb, const int64_t m, const int64_t n, const int64_t k, const double* alpha,
const double* a, const int64_t lda, const double* b, const int64_t ldb, const double* beta, double* c, const int64_t ldc);
void gpu_sgemm(const void* handle, const char transa, const char transb, const int64_t m, const int64_t n, const int64_t k, const float* alpha,
const float* a, const int64_t lda, const float* b, const int64_t ldb, const float* beta, float* c, const int64_t ldc);
void gpu_dgeam(const void* handle, const char transa, const char transb, const int64_t m, const int64_t n, const double* alpha,
const double* a, const int64_t lda, const double* beta, const double* b, const int64_t ldb, double* c, const int64_t ldc);
void gpu_sgeam(const void* handle, const char transa, const char transb, const int64_t m, const int64_t n, const float* alpha,
const float* a, const int64_t lda, const float* beta, const float* b, const int64_t ldb, float* c, const int64_t ldc);

26
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@ -0,0 +1,26 @@
use gpu
BEGIN_PROVIDER [ type(gpu_blas), blas_handle ]
implicit none
BEGIN_DOC
! Handle for cuBLAS or RocBLAS
END_DOC
call gpu_blas_create(blas_handle)
END_PROVIDER
BEGIN_PROVIDER [ type(gpu_stream), gpu_default_stream ]
implicit none
BEGIN_DOC
! Default stream
END_DOC
gpu_default_stream%c = C_NULL_PTR
END_PROVIDER
BEGIN_PROVIDER [ integer, gpu_num ]
implicit none
BEGIN_DOC
! Number of usable GPUs
END_DOC
gpu_num = gpu_ndevices()
END_PROVIDER

707
src/gpu/gpu_module.F90 Normal file
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@ -0,0 +1,707 @@
module gpu
use, intrinsic :: iso_c_binding
implicit none
! Data types
! ----------
type gpu_double1
type(c_ptr) :: c
double precision, pointer :: f(:)
end type
type gpu_double2
type(c_ptr) :: c
double precision, pointer :: f(:,:)
end type
type gpu_double3
type(c_ptr) :: c
double precision, pointer :: f(:,:,:)
end type
type gpu_double4
type(c_ptr) :: c
double precision, pointer :: f(:,:,:,:)
end type
type gpu_double5
type(c_ptr) :: c
double precision, pointer :: f(:,:,:,:,:)
end type
type gpu_double6
type(c_ptr) :: c
double precision, pointer :: f(:,:,:,:,:,:)
end type
type gpu_blas
type(c_ptr) :: c
end type
type gpu_stream
type(c_ptr) :: c
end type
! C interfaces
! ------------
interface
logical(c_bool) function no_gpu() bind(C)
import
end function
integer function gpu_ndevices() bind(C)
import
end function
subroutine gpu_set_device(id) bind(C)
import
integer(c_int32_t), value :: id
end subroutine
subroutine gpu_allocate_c(ptr, n) bind(C, name='gpu_allocate')
import
type(c_ptr) :: ptr
integer(c_int64_t), value :: n
end subroutine
subroutine gpu_deallocate_c(ptr) bind(C, name='gpu_deallocate')
import
type(c_ptr) :: ptr
end subroutine
subroutine gpu_upload_c(cpu_ptr, gpu_ptr, n) bind(C, name='gpu_upload')
import
type(c_ptr), value :: cpu_ptr
type(c_ptr), value :: gpu_ptr
integer(c_int64_t), value :: n
end subroutine
subroutine gpu_download_c(gpu_ptr, cpu_ptr, n) bind(C, name='gpu_download')
import
type(c_ptr), value :: gpu_ptr
type(c_ptr), value :: cpu_ptr
integer(c_int64_t), value :: n
end subroutine
subroutine gpu_copy_c(gpu_ptr_src, gpu_ptr_dest, n) bind(C, name='gpu_copy')
import
type(c_ptr), value :: gpu_ptr_src
type(c_ptr), value :: gpu_ptr_dest
integer(c_int64_t), value :: n
end subroutine
subroutine gpu_stream_create_c(stream) bind(C, name='gpu_stream_create')
import
type(c_ptr) :: stream
end subroutine
subroutine gpu_stream_destroy_c(stream) bind(C, name='gpu_stream_destroy')
import
type(c_ptr) :: stream
end subroutine
subroutine gpu_set_stream_c(handle, stream) bind(C, name='gpu_set_stream')
import
type(c_ptr), value :: handle, stream
end subroutine
subroutine gpu_synchronize() bind(C)
import
end subroutine
subroutine gpu_blas_create_c(handle) bind(C, name='gpu_blas_create')
import
type(c_ptr) :: handle
end subroutine
subroutine gpu_blas_destroy_c(handle) bind(C, name='gpu_blas_destroy')
import
type(c_ptr) :: handle
end subroutine
subroutine gpu_ddot_c(handle, n, dx, incx, dy, incy, res) bind(C, name='gpu_ddot')
import
type(c_ptr), value, intent(in) :: handle
integer(c_int64_t), value :: n, incx, incy
type(c_ptr), value :: dx, dy
real(c_double), intent(out) :: res
end subroutine
subroutine gpu_sdot_c(handle, n, dx, incx, dy, incy, res) bind(C, name='gpu_sdot')
import
type(c_ptr), value, intent(in) :: handle
integer(c_int64_t), value :: n, incx, incy
type(c_ptr), intent(in), value :: dx, dy
real(c_float), intent(out) :: res
end subroutine
subroutine gpu_dgeam_c(handle, transa, transb, m, n, alpha, a, lda, beta, &
b, ldb, c, ldc) bind(C, name='gpu_dgeam')
import
type(c_ptr), value, intent(in) :: handle
character(c_char), intent(in), value :: transa, transb
integer(c_int64_t), intent(in), value :: m, n, lda, ldb, ldc
real(c_double), intent(in) :: alpha, beta
type(c_ptr), value :: a, b, c
end subroutine
subroutine gpu_sgeam_c(handle, transa, transb, m, n, alpha, a, lda, beta, &
b, ldb, c, ldc) bind(C, name='gpu_sgeam')
import
type(c_ptr), value, intent(in) :: handle
character(c_char), intent(in), value :: transa, transb
integer(c_int64_t), intent(in), value :: m, n, lda, ldb, ldc
real(c_float), intent(in) :: alpha, beta
real(c_float) :: a, b, c
end subroutine
subroutine gpu_dgemv_c(handle, transa, m, n, alpha, a, lda, &
x, incx, beta, y, incy) bind(C, name='gpu_dgemv')
import
type(c_ptr), value, intent(in) :: handle
character(c_char), intent(in) :: transa
integer(c_int64_t), intent(in), value :: m, n, lda, incx, incy
real(c_double), intent(in) :: alpha, beta
real(c_double) :: a, x, y
end subroutine
subroutine gpu_sgemv_c(handle, transa, m, n, alpha, a, lda, &
x, incx, beta, y, incy) bind(C, name='gpu_sgemv')
import
type(c_ptr), value, intent(in) :: handle
character(c_char), intent(in) :: transa
integer(c_int64_t), intent(in), value :: m, n, lda, incx, incy
real(c_float), intent(in) :: alpha, beta
real(c_float) :: a, x, y
end subroutine
subroutine gpu_dgemm_c(handle, transa, transb, m, n, k, alpha, a, lda, &
b, ldb, beta, c, ldc) bind(C, name='gpu_dgemm')
import
type(c_ptr), value, intent(in) :: handle
character(c_char), intent(in) :: transa, transb
integer(c_int64_t), intent(in), value :: m, n, k, lda, ldb, ldc
real(c_double), intent(in) :: alpha, beta
real(c_double) :: a, b, c
end subroutine
subroutine gpu_sgemm_c(handle, transa, transb, m, n, k, alpha, a, lda, &
b, ldb, beta, c, ldc) bind(C, name='gpu_sgemm')
import
type(c_ptr), value, intent(in) :: handle
character(c_char), intent(in), value :: transa, transb
integer(c_int64_t), intent(in), value :: m, n, k, lda, ldb, ldc
real(c_float), intent(in) :: alpha, beta
real(c_float) :: a, b, c
end subroutine
end interface
! Polymorphic interfaces
! ----------------------
interface gpu_allocate
procedure gpu_allocate_double1 &
,gpu_allocate_double2 &
,gpu_allocate_double3 &
,gpu_allocate_double4 &
,gpu_allocate_double5 &
,gpu_allocate_double6 &
,gpu_allocate_double1_64 &
,gpu_allocate_double2_64 &
,gpu_allocate_double3_64 &
,gpu_allocate_double4_64 &
,gpu_allocate_double5_64 &
,gpu_allocate_double6_64
end interface gpu_allocate
interface gpu_deallocate
procedure gpu_deallocate_double1 &
,gpu_deallocate_double2 &
,gpu_deallocate_double3 &
,gpu_deallocate_double4 &
,gpu_deallocate_double5 &
,gpu_deallocate_double6
end interface gpu_deallocate
interface gpu_upload
procedure gpu_upload_double1 &
,gpu_upload_double2 &
,gpu_upload_double3 &
,gpu_upload_double4 &
,gpu_upload_double5 &
,gpu_upload_double6
end interface gpu_upload
interface gpu_download
procedure gpu_download_double1 &
,gpu_download_double2 &
,gpu_download_double3 &
,gpu_download_double4 &
,gpu_download_double5 &
,gpu_download_double6
end interface gpu_download
interface gpu_copy
procedure gpu_copy_double1 &
,gpu_copy_double2 &
,gpu_copy_double3 &
,gpu_copy_double4 &
,gpu_copy_double5 &
,gpu_copy_double6
end interface gpu_copy
contains
! gpu_allocate
! ------------
subroutine gpu_allocate_double1(ptr, s)
implicit none
type(gpu_double1), intent(inout) :: ptr
integer, intent(in) :: s
call gpu_allocate_c(ptr%c, s*8_8)
call c_f_pointer(ptr%c, ptr%f, (/ s /))
end subroutine
subroutine gpu_allocate_double2(ptr, s1, s2)
implicit none
type(gpu_double2), intent(inout) :: ptr
integer, intent(in) :: s1, s2
call gpu_allocate_c(ptr%c, s1*s2*8_8)
call c_f_pointer(ptr%c, ptr%f, (/ s1, s2 /))
end subroutine
subroutine gpu_allocate_double3(ptr, s1, s2, s3)
implicit none
type(gpu_double3), intent(inout) :: ptr
integer, intent(in) :: s1, s2, s3
call gpu_allocate_c(ptr%c, s1*s2*s3*8_8)
call c_f_pointer(ptr%c, ptr%f, (/ s1, s2, s3 /))
end subroutine
subroutine gpu_allocate_double4(ptr, s1, s2, s3, s4)
implicit none
type(gpu_double4), intent(inout) :: ptr
integer, intent(in) :: s1, s2, s3, s4
call gpu_allocate_c(ptr%c, s1*s2*s3*s4*8_8)
call c_f_pointer(ptr%c, ptr%f, (/ s1, s2, s3, s4 /))
end subroutine
subroutine gpu_allocate_double5(ptr, s1, s2, s3, s4, s5)
implicit none
type(gpu_double5), intent(inout) :: ptr
integer, intent(in) :: s1, s2, s3, s4, s5
call gpu_allocate_c(ptr%c, s1*s2*s3*s4*s5*8_8)
call c_f_pointer(ptr%c, ptr%f, (/ s1, s2, s3, s4, s5 /))
end subroutine
subroutine gpu_allocate_double6(ptr, s1, s2, s3, s4, s5, s6)
implicit none
type(gpu_double6), intent(inout) :: ptr
integer, intent(in) :: s1, s2, s3, s4, s5, s6
call gpu_allocate_c(ptr%c, s1*s2*s3*s4*s5*s6*8_8)
call c_f_pointer(ptr%c, ptr%f, (/ s1, s2, s3, s4, s5, s6 /))
end subroutine
subroutine gpu_allocate_double1_64(ptr, s)
implicit none
type(gpu_double1), intent(inout) :: ptr
integer*8, intent(in) :: s
call gpu_allocate_c(ptr%c, s)
call c_f_pointer(ptr%c, ptr%f, (/ s /))
end subroutine
subroutine gpu_allocate_double2_64(ptr, s1, s2)
implicit none
type(gpu_double2), intent(inout) :: ptr
integer*8, intent(in) :: s1, s2
call gpu_allocate_c(ptr%c, s1*s2*8_8)
call c_f_pointer(ptr%c, ptr%f, (/ s1, s2 /))
end subroutine
subroutine gpu_allocate_double3_64(ptr, s1, s2, s3)
implicit none
type(gpu_double3), intent(inout) :: ptr
integer*8, intent(in) :: s1, s2, s3
call gpu_allocate_c(ptr%c, s1*s2*s3*8_8)
call c_f_pointer(ptr%c, ptr%f, (/ s1, s2, s3 /))
end subroutine
subroutine gpu_allocate_double4_64(ptr, s1, s2, s3, s4)
implicit none
type(gpu_double4), intent(inout) :: ptr
integer*8, intent(in) :: s1, s2, s3, s4
call gpu_allocate_c(ptr%c, s1*s2*s3*s4*8_8)
call c_f_pointer(ptr%c, ptr%f, (/ s1, s2, s3, s4 /))
end subroutine
subroutine gpu_allocate_double5_64(ptr, s1, s2, s3, s4, s5)
implicit none
type(gpu_double5), intent(inout) :: ptr
integer*8, intent(in) :: s1, s2, s3, s4, s5
call gpu_allocate_c(ptr%c, s1*s2*s3*s4*s5*8_8)
call c_f_pointer(ptr%c, ptr%f, (/ s1, s2, s3, s4, s5 /))
end subroutine
subroutine gpu_allocate_double6_64(ptr, s1, s2, s3, s4, s5, s6)
implicit none
type(gpu_double6), intent(inout) :: ptr
integer*8, intent(in) :: s1, s2, s3, s4, s5, s6
call gpu_allocate_c(ptr%c, s1*s2*s3*s4*s5*s6*8_8)
call c_f_pointer(ptr%c, ptr%f, (/ s1, s2, s3, s4, s5, s6 /))
end subroutine
! gpu_deallocate
! --------------
subroutine gpu_deallocate_double1(ptr)
implicit none
type(gpu_double1), intent(inout) :: ptr
call gpu_deallocate_c(ptr%c)
NULLIFY(ptr%f)
end subroutine
subroutine gpu_deallocate_double2(ptr)
implicit none
type(gpu_double2), intent(inout) :: ptr
call gpu_deallocate_c(ptr%c)
NULLIFY(ptr%f)
end subroutine
subroutine gpu_deallocate_double3(ptr)
implicit none
type(gpu_double3), intent(inout) :: ptr
call gpu_deallocate_c(ptr%c)
NULLIFY(ptr%f)
end subroutine
subroutine gpu_deallocate_double4(ptr)
implicit none
type(gpu_double4), intent(inout) :: ptr
call gpu_deallocate_c(ptr%c)
NULLIFY(ptr%f)
end subroutine
subroutine gpu_deallocate_double5(ptr)
implicit none
type(gpu_double5), intent(inout) :: ptr
call gpu_deallocate_c(ptr%c)
NULLIFY(ptr%f)
end subroutine
subroutine gpu_deallocate_double6(ptr)
implicit none
type(gpu_double6), intent(inout) :: ptr
call gpu_deallocate_c(ptr%c)
NULLIFY(ptr%f)
end subroutine
! gpu_upload
! ----------
subroutine gpu_upload_double1(cpu_ptr, gpu_ptr)
implicit none
double precision, target, intent(in) :: cpu_ptr(*)
type(gpu_double1), intent(in) :: gpu_ptr
call gpu_upload_c(c_loc(cpu_ptr), gpu_ptr%c, 8_8*size(gpu_ptr%f))
end subroutine
subroutine gpu_upload_double2(cpu_ptr, gpu_ptr)
implicit none
double precision, target, intent(in) :: cpu_ptr(:,:)
type(gpu_double2), intent(in) :: gpu_ptr
call gpu_upload_c(c_loc(cpu_ptr), gpu_ptr%c, product(shape(gpu_ptr%f)*1_8)*8_8)
end subroutine
subroutine gpu_upload_double3(cpu_ptr, gpu_ptr)
implicit none
double precision, target, intent(in) :: cpu_ptr(:,:,:)
type(gpu_double3), intent(in) :: gpu_ptr
call gpu_upload_c(c_loc(cpu_ptr), gpu_ptr%c, product(shape(gpu_ptr%f)*1_8)*8_8)
end subroutine
subroutine gpu_upload_double4(cpu_ptr, gpu_ptr)
implicit none
double precision, target, intent(in) :: cpu_ptr(:,:,:,:)
type(gpu_double4), intent(in) :: gpu_ptr
call gpu_upload_c(c_loc(cpu_ptr), gpu_ptr%c, product(shape(gpu_ptr%f)*1_8)*8_8)
end subroutine
subroutine gpu_upload_double5(cpu_ptr, gpu_ptr)
implicit none
double precision, target, intent(in) :: cpu_ptr(:,:,:,:,:)
type(gpu_double5), intent(in) :: gpu_ptr
call gpu_upload_c(c_loc(cpu_ptr), gpu_ptr%c, product(shape(gpu_ptr%f)*1_8)*8_8)
end subroutine
subroutine gpu_upload_double6(cpu_ptr, gpu_ptr)
implicit none
double precision, target, intent(in) :: cpu_ptr(:,:,:,:,:,:)
type(gpu_double6), intent(in) :: gpu_ptr
call gpu_upload_c(c_loc(cpu_ptr), gpu_ptr%c, product(shape(gpu_ptr%f)*1_8)*8_8)
end subroutine
! gpu_download
! ------------
subroutine gpu_download_double1(gpu_ptr, cpu_ptr)
implicit none
type(gpu_double1), intent(in) :: gpu_ptr
double precision, target, intent(in) :: cpu_ptr(:)
call gpu_download_c(gpu_ptr%c, c_loc(cpu_ptr), 8_8*size(gpu_ptr%f))
end subroutine
subroutine gpu_download_double2(gpu_ptr, cpu_ptr)
implicit none
type(gpu_double2), intent(in) :: gpu_ptr
double precision, target, intent(in) :: cpu_ptr(:,:)
call gpu_download_c(gpu_ptr%c, c_loc(cpu_ptr), 8_8*product(shape(gpu_ptr%f)*1_8))
end subroutine
subroutine gpu_download_double3(gpu_ptr, cpu_ptr)
implicit none
type(gpu_double3), intent(in) :: gpu_ptr
double precision, target, intent(in) :: cpu_ptr(:,:,:)
call gpu_download_c(gpu_ptr%c, c_loc(cpu_ptr), 8_8*product(shape(gpu_ptr%f)*1_8))
end subroutine
subroutine gpu_download_double4(gpu_ptr, cpu_ptr)
implicit none
type(gpu_double4), intent(in) :: gpu_ptr
double precision, target, intent(in) :: cpu_ptr(:,:,:,:)
call gpu_download_c(gpu_ptr%c, c_loc(cpu_ptr), 8_8*product(shape(gpu_ptr%f)*1_8))
end subroutine
subroutine gpu_download_double5(gpu_ptr, cpu_ptr)
implicit none
type(gpu_double5), intent(in) :: gpu_ptr
double precision, target, intent(in) :: cpu_ptr(:,:,:,:,:)
call gpu_download_c(gpu_ptr%c, c_loc(cpu_ptr), 8_8*product(shape(gpu_ptr%f)*1_8))
end subroutine
subroutine gpu_download_double6(gpu_ptr, cpu_ptr)
implicit none
type(gpu_double6), intent(in) :: gpu_ptr
double precision, target, intent(in) :: cpu_ptr(:,:,:,:,:,:)
call gpu_download_c(gpu_ptr%c, c_loc(cpu_ptr), 8_8*product(shape(gpu_ptr%f)*1_8))
end subroutine
! gpu_copy
! --------
subroutine gpu_copy_double1(gpu_ptr_src, gpu_ptr_dest)
implicit none
type(gpu_double1), intent(in) :: gpu_ptr_src
type(gpu_double1), intent(in) :: gpu_ptr_dest
call gpu_copy_c(gpu_ptr_src%c, gpu_ptr_dest%c, 8_8*size(gpu_ptr_dest%f))
end subroutine
subroutine gpu_copy_double2(gpu_ptr_src, gpu_ptr_dest)
implicit none
type(gpu_double2), intent(in) :: gpu_ptr_src
type(gpu_double2), intent(in) :: gpu_ptr_dest
call gpu_copy_c(gpu_ptr_src%c, gpu_ptr_dest%c, 8_8*product(shape(gpu_ptr_dest%f)*1_8))
end subroutine
subroutine gpu_copy_double3(gpu_ptr_src, gpu_ptr_dest)
implicit none
type(gpu_double3), intent(in) :: gpu_ptr_src
type(gpu_double3), intent(in) :: gpu_ptr_dest
call gpu_copy_c(gpu_ptr_src%c, gpu_ptr_dest%c, 8_8*product(shape(gpu_ptr_dest%f)*1_8))
end subroutine
subroutine gpu_copy_double4(gpu_ptr_src, gpu_ptr_dest)
implicit none
type(gpu_double4), intent(in) :: gpu_ptr_src
type(gpu_double4), intent(in) :: gpu_ptr_dest
call gpu_copy_c(gpu_ptr_src%c, gpu_ptr_dest%c, 8_8*product(shape(gpu_ptr_dest%f)*1_8))
end subroutine
subroutine gpu_copy_double5(gpu_ptr_src, gpu_ptr_dest)
implicit none
type(gpu_double5), intent(in) :: gpu_ptr_src
type(gpu_double5), intent(in) :: gpu_ptr_dest
call gpu_copy_c(gpu_ptr_src%c, gpu_ptr_dest%c, 8_8*product(shape(gpu_ptr_dest%f)*1_8))
end subroutine
subroutine gpu_copy_double6(gpu_ptr_src, gpu_ptr_dest)
implicit none
type(gpu_double6), intent(in) :: gpu_ptr_src
type(gpu_double6), intent(in) :: gpu_ptr_dest
call gpu_copy_c(gpu_ptr_src%c, gpu_ptr_dest%c, 8_8*product(shape(gpu_ptr_dest%f)*1_8))
end subroutine
! gpu_stream
! ----------
subroutine gpu_stream_create(stream)
type(gpu_stream) :: stream
call gpu_stream_create_c(stream%c)
end subroutine
subroutine gpu_stream_destroy(stream)
type(gpu_stream) :: stream
call gpu_stream_destroy_c(stream%c)
end subroutine
subroutine gpu_set_stream(handle, stream)
type(gpu_blas) :: handle
type(gpu_stream) :: stream
call gpu_set_stream_c(handle%c, stream%c)
end subroutine
! gpu_blas
! --------
subroutine gpu_blas_create(handle)
type(gpu_blas) :: handle
call gpu_blas_create_c(handle%c)
end subroutine
subroutine gpu_blas_destroy(handle)
type(gpu_blas) :: handle
call gpu_blas_destroy_c(handle%c)
end subroutine
! dot
! ---
subroutine gpu_ddot(handle, n, dx, incx, dy, incy, res)
! use gpu
type(gpu_blas), intent(in) :: handle
integer*4 :: n, incx, incy
double precision, target :: dx, dy
double precision, intent(out) :: res
call gpu_ddot_c(handle%c, int(n,c_int64_t), c_loc(dx), int(incx,c_int64_t), c_loc(dy), int(incy,c_int64_t), res)
end subroutine
subroutine gpu_ddot_64(handle, n, dx, incx, dy, incy, res)
! use gpu
type(gpu_blas), intent(in) :: handle
integer*8 :: n, incx, incy
double precision, target :: dx, dy
double precision, intent(out) :: res
call gpu_ddot_c(handle%c, n, c_loc(dx), incx, c_loc(dy), incy, res)
end subroutine
! geam
! ----
subroutine gpu_dgeam(handle, transa, transb, m, n, alpha, a, lda, beta, &
b, ldb, c, ldc)
! use gpu
type(gpu_blas), intent(in) :: handle
character, intent(in) :: transa, transb
integer*4, intent(in) :: m, n, lda, ldb, ldc
double precision, intent(in) :: alpha, beta
double precision, target :: a, b, c
call gpu_dgeam_c(handle%c, transa, transb, int(m,c_int64_t), int(n,c_int64_t), alpha, c_loc(a), int(lda,c_int64_t), beta, &
c_loc(b), int(ldb,c_int64_t), c_loc(c), int(ldc,c_int64_t))
end subroutine
subroutine gpu_dgeam_64(handle, transa, transb, m, n, alpha, a, lda, beta, &
b, ldb, c, ldc)
! use gpu
type(gpu_blas), intent(in) :: handle
character, intent(in) :: transa, transb
integer*8, intent(in) :: m, n, lda, ldb, ldc
double precision, intent(in) :: alpha, beta
double precision, target :: a, b, c
call gpu_dgeam_c(handle%c, transa, transb, int(m,c_int64_t), int(n,c_int64_t), alpha, c_loc(a), int(lda,c_int64_t), beta, &
c_loc(b), int(ldb,c_int64_t), c_loc(c), int(ldc,c_int64_t))
end subroutine
! gemv
! ----
subroutine gpu_dgemv(handle, transa, m, n, alpha, a, lda, &
x, incx, beta, y, incy)
! use gpu
type(gpu_blas), intent(in) :: handle
character, intent(in) :: transa
integer*4, intent(in) :: m, n, lda, incx, incy
double precision, intent(in) :: alpha, beta
double precision :: a, x, y
call gpu_dgemv_c(handle%c, transa, int(m,c_int64_t), int(n,c_int64_t), &
alpha, a, int(lda,c_int64_t), &
x, int(incx,c_int64_t), beta, y, int(incy,c_int64_t))
end subroutine
subroutine gpu_dgemv_64(handle, transa, m, n, alpha, a, lda, &
x, incx, beta, y, incy)
! use gpu
type(gpu_blas), intent(in) :: handle
character, intent(in) :: transa
integer*8, intent(in) :: m, n, lda, incx, incy
double precision, intent(in) :: alpha, beta
double precision :: a, x, y
call gpu_dgemv_c(handle%c, transa, int(m,c_int64_t), int(n,c_int64_t), &
alpha, a, int(lda,c_int64_t), &
x, int(incx,c_int64_t), beta, y, int(incy,c_int64_t))
end subroutine
! gemm
! ----
subroutine gpu_dgemm(handle, transa, transb, m, n, k, alpha, a, lda, &
b, ldb, beta, c, ldc)
! use gpu
type(gpu_blas), intent(in) :: handle
character, intent(in) :: transa, transb
integer*4, intent(in) :: m, n, k, lda, ldb, ldc
double precision, intent(in) :: alpha, beta
double precision :: a, b, c
call gpu_dgemm_c(handle%c, transa, transb, int(m,c_int64_t), int(n,c_int64_t), int(k,c_int64_t), &
alpha, a, int(lda,c_int64_t), &
b, int(ldb,c_int64_t), beta, c, int(ldc,c_int64_t))
end subroutine
subroutine gpu_dgemm_64(handle, transa, transb, m, n, k, alpha, a, lda, &
b, ldb, beta, c, ldc)
! use gpu
type(gpu_blas), intent(in) :: handle
character, intent(in) :: transa, transb
integer*8, intent(in) :: m, n, k, lda, ldb, ldc
double precision, intent(in) :: alpha, beta
double precision :: a, b, c
call gpu_dgemm_c(handle%c, transa, transb, int(m,c_int64_t), int(n,c_int64_t), int(k,c_int64_t), &
alpha, a, int(lda,c_int64_t), b, int(ldb,c_int64_t), beta, c, int(ldc,c_int64_t))
end subroutine
end module

View File

@ -194,14 +194,25 @@ END_PROVIDER
endif
double precision :: rss
double precision :: rss, mem0, mem
double precision :: memory_of_double
integer :: iblock
integer, parameter :: block_size = 32
integer :: block_size
call resident_memory(mem0)
block_size = 1024
rss = memory_of_double(2.d0*ao_num*ao_num)
do
mem = mem0 + block_size*rss
if ( (block_size < 2).or.(mem < qp_max_mem) ) exit
block_size = block_size/2
enddo
call check_mem(block_size*rss, irp_here)
rss = memory_of_double(ao_num*ao_num)
call check_mem(2.d0*block_size*rss, irp_here)
allocate(X2(ao_num,ao_num,block_size,2))
allocate(X3(ao_num,block_size,ao_num,2))

View File

@ -40,7 +40,7 @@ end
! Min and max values of the MOs for which the integrals are in the cache
END_DOC
mo_integrals_cache_size = 2_8**mo_integrals_cache_shift
mo_integrals_cache_size = 2**mo_integrals_cache_shift
mo_integrals_cache_min = max(1,elec_alpha_num - (mo_integrals_cache_size/2 - 1) )
mo_integrals_cache_max = min(mo_num, mo_integrals_cache_min + mo_integrals_cache_size - 1)

View File

@ -18,7 +18,7 @@
BEGIN_PROVIDER [double precision, multi_s_dipole_moment, (N_states, N_states)]
BEGIN_PROVIDER [double precision, multi_s_dipole_moment , (N_states, N_states)]
&BEGIN_PROVIDER [double precision, multi_s_x_dipole_moment, (N_states, N_states)]
&BEGIN_PROVIDER [double precision, multi_s_y_dipole_moment, (N_states, N_states)]
&BEGIN_PROVIDER [double precision, multi_s_z_dipole_moment, (N_states, N_states)]
@ -40,17 +40,18 @@ BEGIN_PROVIDER [double precision, multi_s_dipole_moment, (N_states, N_states)]
! gamma^{nm}: density matrix \bra{\Psi^n} a^{\dagger}_a a_i \ket{\Psi^m}
END_DOC
integer :: istate,jstate ! States
integer :: i,j ! general spatial MOs
integer :: istate, jstate ! States
integer :: i, j ! general spatial MOs
double precision :: nuclei_part_x, nuclei_part_y, nuclei_part_z
multi_s_x_dipole_moment = 0.d0
multi_s_y_dipole_moment = 0.d0
multi_s_z_dipole_moment = 0.d0
if(8.d0*mo_num*mo_num*n_states*n_states*1d-9 .lt. 200.d0) then
do jstate = 1, N_states
do istate = 1, N_states
do i = 1, mo_num
do j = 1, mo_num
multi_s_x_dipole_moment(istate,jstate) -= one_e_tr_dm_mo(j,i,istate,jstate) * mo_dipole_x(j,i)
@ -58,9 +59,134 @@ BEGIN_PROVIDER [double precision, multi_s_dipole_moment, (N_states, N_states)]
multi_s_z_dipole_moment(istate,jstate) -= one_e_tr_dm_mo(j,i,istate,jstate) * mo_dipole_z(j,i)
enddo
enddo
enddo
enddo
else
! no enouph memory
! on the fly scheme
PROVIDE psi_det_alpha_unique psi_det_beta_unique
integer :: l, k_a, k_b
integer :: occ(N_int*bit_kind_size,2)
integer :: h1, h2, p1, p2, degree
integer :: exc(0:2,2), n_occ(2)
integer :: krow, kcol, lrow, lcol
integer(bit_kind) :: tmp_det(N_int,2), tmp_det2(N_int)
double precision :: ck, ckl, phase
!$OMP PARALLEL DEFAULT(NONE) &
!$OMP PRIVATE(j, l, k_a, k_b, istate, jstate, occ, ck, ckl, h1, h2, p1, p2, exc, &
!$OMP phase, degree, n_occ, krow, kcol, lrow, lcol, tmp_det, tmp_det2) &
!$OMP SHARED(N_int, N_states, elec_alpha_num, elec_beta_num, N_det, &
!$OMP psi_bilinear_matrix_rows, psi_bilinear_matrix_columns, &
!$OMP psi_bilinear_matrix_transp_rows, psi_bilinear_matrix_transp_columns, &
!$OMP psi_det_alpha_unique, psi_det_beta_unique, &
!$OMP psi_bilinear_matrix_values, psi_bilinear_matrix_transp_values, &
!$OMP mo_dipole_x, mo_dipole_y, mo_dipole_z, &
!$OMP multi_s_x_dipole_moment, multi_s_y_dipole_moment, multi_s_z_dipole_moment)
!$OMP DO COLLAPSE(2)
do istate = 1, N_states
do jstate = 1, N_states
do k_a = 1, N_det
krow = psi_bilinear_matrix_rows (k_a)
kcol = psi_bilinear_matrix_columns(k_a)
tmp_det(1:N_int,1) = psi_det_alpha_unique(1:N_int,krow)
tmp_det(1:N_int,2) = psi_det_beta_unique (1:N_int,kcol)
! Diagonal part
call bitstring_to_list_ab(tmp_det, occ, n_occ, N_int)
ck = psi_bilinear_matrix_values(k_a,istate)*psi_bilinear_matrix_values(k_a,jstate)
do l = 1, elec_alpha_num
j = occ(l,1)
multi_s_x_dipole_moment(istate,jstate) -= ck * mo_dipole_x(j,j)
multi_s_y_dipole_moment(istate,jstate) -= ck * mo_dipole_y(j,j)
multi_s_z_dipole_moment(istate,jstate) -= ck * mo_dipole_z(j,j)
enddo
if (k_a == N_det) cycle
l = k_a + 1
lrow = psi_bilinear_matrix_rows (l)
lcol = psi_bilinear_matrix_columns(l)
! Fix beta determinant, loop over alphas
do while (lcol == kcol)
tmp_det2(:) = psi_det_alpha_unique(:,lrow)
call get_excitation_degree_spin(tmp_det(1,1), tmp_det2, degree, N_int)
if (degree == 1) then
exc = 0
call get_single_excitation_spin(tmp_det(1,1), tmp_det2, exc, phase, N_int)
call decode_exc_spin(exc, h1, p1, h2, p2)
ckl = psi_bilinear_matrix_values(k_a,istate)*psi_bilinear_matrix_values(l,jstate) * phase
multi_s_x_dipole_moment(istate,jstate) -= ckl * mo_dipole_x(h1,p1)
multi_s_y_dipole_moment(istate,jstate) -= ckl * mo_dipole_y(h1,p1)
multi_s_z_dipole_moment(istate,jstate) -= ckl * mo_dipole_z(h1,p1)
ckl = psi_bilinear_matrix_values(k_a,jstate)*psi_bilinear_matrix_values(l,istate) * phase
multi_s_x_dipole_moment(istate,jstate) -= ckl * mo_dipole_x(p1,h1)
multi_s_y_dipole_moment(istate,jstate) -= ckl * mo_dipole_y(p1,h1)
multi_s_z_dipole_moment(istate,jstate) -= ckl * mo_dipole_z(p1,h1)
endif
l = l+1
if (l > N_det) exit
lrow = psi_bilinear_matrix_rows (l)
lcol = psi_bilinear_matrix_columns(l)
enddo
enddo ! k_a
do k_b = 1, N_det
krow = psi_bilinear_matrix_transp_rows (k_b)
kcol = psi_bilinear_matrix_transp_columns(k_b)
tmp_det(1:N_int,1) = psi_det_alpha_unique(1:N_int,krow)
tmp_det(1:N_int,2) = psi_det_beta_unique (1:N_int,kcol)
! Diagonal part
call bitstring_to_list_ab(tmp_det, occ, n_occ, N_int)
ck = psi_bilinear_matrix_transp_values(k_b,istate)*psi_bilinear_matrix_transp_values(k_b,jstate)
do l = 1, elec_beta_num
j = occ(l,2)
multi_s_x_dipole_moment(istate,jstate) -= ck * mo_dipole_x(j,j)
multi_s_y_dipole_moment(istate,jstate) -= ck * mo_dipole_y(j,j)
multi_s_z_dipole_moment(istate,jstate) -= ck * mo_dipole_z(j,j)
enddo
if (k_b == N_det) cycle
l = k_b+1
lrow = psi_bilinear_matrix_transp_rows (l)
lcol = psi_bilinear_matrix_transp_columns(l)
! Fix beta determinant, loop over alphas
do while (lrow == krow)
tmp_det2(:) = psi_det_beta_unique(:,lcol)
call get_excitation_degree_spin(tmp_det(1,2), tmp_det2, degree, N_int)
if (degree == 1) then
exc = 0
call get_single_excitation_spin(tmp_det(1,2), tmp_det2, exc, phase, N_int)
call decode_exc_spin(exc, h1, p1, h2, p2)
ckl = psi_bilinear_matrix_transp_values(k_b,istate)*psi_bilinear_matrix_transp_values(l,jstate) * phase
multi_s_x_dipole_moment(istate,jstate) -= ckl * mo_dipole_x(h1,p1)
multi_s_y_dipole_moment(istate,jstate) -= ckl * mo_dipole_y(h1,p1)
multi_s_z_dipole_moment(istate,jstate) -= ckl * mo_dipole_z(h1,p1)
ckl = psi_bilinear_matrix_transp_values(k_b,jstate)*psi_bilinear_matrix_transp_values(l,istate) * phase
multi_s_x_dipole_moment(istate,jstate) -= ckl * mo_dipole_x(p1,h1)
multi_s_y_dipole_moment(istate,jstate) -= ckl * mo_dipole_y(p1,h1)
multi_s_z_dipole_moment(istate,jstate) -= ckl * mo_dipole_z(p1,h1)
endif
l = l+1
if (l > N_det) exit
lrow = psi_bilinear_matrix_transp_rows (l)
lcol = psi_bilinear_matrix_transp_columns(l)
enddo
enddo ! k_b
enddo ! istate
enddo ! jstate
!$OMP END DO
!$OMP END PARALLEL
endif ! memory condition
! Nuclei part
nuclei_part_x = 0.d0

View File

@ -12,6 +12,9 @@ program four_idx_transform
!
END_DOC
if (do_mo_cholesky) then
stop 'Not implemented with Cholesky integrals'
endif
io_mo_two_e_integrals = 'Write'
SOFT_TOUCH io_mo_two_e_integrals
if (.true.) then

View File

@ -557,7 +557,7 @@ subroutine export_trexio(update,full_path)
do k=1,cholesky_ao_num
do j=1,mo_num
do i=1,mo_num
integral = cholesky_mo(i,j,k)
integral = cholesky_mo_transp(k,i,j)
if (integral == 0.d0) cycle
icount += 1_8
chol_buffer(icount) = integral

View File

@ -28,7 +28,7 @@ subroutine run(f)
integer(trexio_t), intent(in) :: f ! TREXIO file handle
integer(trexio_exit_code) :: rc
integer ::i,j,k,l
integer :: i,j,k,l, iunit
integer(8) :: m, n_integrals
double precision :: integral
@ -41,10 +41,12 @@ subroutine run(f)
integer , allocatable :: Vi(:,:)
double precision :: s
! TODO:
! - If Cholesky AO in trexio file, read cholesky ao vectors
! - If Cholesky MO in trexio file, read cholesky mo vectors
! - If Cholesky MO not in trexio file, force do_cholesky_mo to False
integer*4 :: BUFSIZE
integer :: rank
double precision, allocatable :: tmp(:,:,:)
integer*8 :: offset, icount
integer, external :: getUnitAndOpen
if (trexio_has_nucleus_repulsion(f) == TREXIO_SUCCESS) then
rc = trexio_read_nucleus_repulsion(f, s)
@ -119,16 +121,58 @@ subroutine run(f)
rc = trexio_has_ao_2e_int(f)
PROVIDE ao_num
if (rc /= TREXIO_HAS_NOT) then
rc = trexio_has_ao_2e_int_eri_cholesky(f)
if (rc /= TREXIO_HAS_NOT) then
rc = trexio_read_ao_2e_int_eri_cholesky_num(f, rank)
call trexio_assert(rc, TREXIO_SUCCESS)
allocate(tmp(ao_num,ao_num,rank))
tmp(:,:,:) = 0.d0
BUFSIZE=ao_num**2
allocate(Vi(3,BUFSIZE), V(BUFSIZE))
offset = 0_8
icount = BUFSIZE
rc = TREXIO_SUCCESS
do while (icount == size(V))
rc = trexio_read_ao_2e_int_eri_cholesky(f, offset, icount, Vi, V)
do m=1,icount
i = Vi(1,m)
j = Vi(2,m)
k = Vi(3,m)
integral = V(m)
tmp(i,j,k) = integral
enddo
offset = offset + icount
if (rc /= TREXIO_SUCCESS) then
exit
endif
end do
print *, 'Writing Cholesky AO vectors to disk...'
iunit = getUnitAndOpen(trim(ezfio_work_dir)//'cholesky_ao', 'W')
write(iunit) rank
write(iunit) tmp(:,:,:)
close(iunit)
call ezfio_set_ao_two_e_ints_io_ao_cholesky('Read')
deallocate(Vi, V, tmp)
print *, 'Cholesky AO integrals read from TREXIO file'
endif
rc = trexio_has_ao_2e_int_eri(f)
if (rc /= TREXIO_HAS_NOT) then
PROVIDE ao_integrals_map
integer*4 :: BUFSIZE
BUFSIZE=ao_num**2
allocate(buffer_i(BUFSIZE), buffer_values(BUFSIZE))
allocate(Vi(4,BUFSIZE), V(BUFSIZE))
integer*8 :: offset, icount
offset = 0_8
icount = BUFSIZE
rc = TREXIO_SUCCESS
@ -159,6 +203,7 @@ subroutine run(f)
deallocate(buffer_i, buffer_values, Vi, V)
print *, 'AO integrals read from TREXIO file'
endif
else
print *, 'AO integrals not found in TREXIO file'
endif
@ -186,6 +231,49 @@ subroutine run(f)
rc = trexio_has_mo_2e_int(f)
if (rc /= TREXIO_HAS_NOT) then
rc = trexio_has_mo_2e_int_eri_cholesky(f)
if (rc /= TREXIO_HAS_NOT) then
rc = trexio_read_mo_2e_int_eri_cholesky_num(f, rank)
call trexio_assert(rc, TREXIO_SUCCESS)
allocate(tmp(rank,mo_num,mo_num))
tmp(:,:,:) = 0.d0
BUFSIZE=mo_num**2
allocate(Vi(3,BUFSIZE), V(BUFSIZE))
offset = 0_8
icount = BUFSIZE
rc = TREXIO_SUCCESS
do while (icount == size(V))
rc = trexio_read_mo_2e_int_eri_cholesky(f, offset, icount, Vi, V)
do m=1,icount
i = Vi(1,m)
j = Vi(2,m)
k = Vi(3,m)
integral = V(m)
tmp(k,i,j) = integral
enddo
offset = offset + icount
if (rc /= TREXIO_SUCCESS) then
exit
endif
end do
print *, 'Writing Cholesky MO vectors to disk...'
iunit = getUnitAndOpen(trim(ezfio_work_dir)//'cholesky_mo_transp', 'W')
write(iunit) rank
write(iunit) tmp(:,:,:)
close(iunit)
call ezfio_set_mo_two_e_ints_io_mo_cholesky('Read')
deallocate(Vi, V, tmp)
print *, 'Cholesky MO integrals read from TREXIO file'
endif
rc = trexio_has_mo_2e_int_eri(f)
if (rc /= TREXIO_HAS_NOT) then
BUFSIZE=mo_num**2
allocate(buffer_i(BUFSIZE), buffer_values(BUFSIZE))
allocate(Vi(4,BUFSIZE), V(BUFSIZE))
@ -220,6 +308,8 @@ subroutine run(f)
call ezfio_set_mo_two_e_ints_io_mo_two_e_integrals('Read')
deallocate(buffer_i, buffer_values, Vi, V)
print *, 'MO integrals read from TREXIO file'
endif
else
print *, 'MO integrals not found in TREXIO file'
endif

View File

@ -40,7 +40,7 @@ void* mmap_fortran(char* filename, size_t bytes, int* file_descr, int read_only,
exit(EXIT_FAILURE);
}
result = write(fd, "", 1);
result = write(fd, " ", 1);
if (result != 1) {
close(fd);
printf("%s:\n", filename);
@ -49,7 +49,13 @@ void* mmap_fortran(char* filename, size_t bytes, int* file_descr, int read_only,
}
if (single_node == 1) {
map = mmap(NULL, bytes, PROT_READ | PROT_WRITE, MAP_PRIVATE | MAP_POPULATE | MAP_NONBLOCK, fd, 0);
map = mmap(NULL, bytes, PROT_READ | PROT_WRITE, MAP_SHARED, fd, 0);
/*
map = mmap(NULL, bytes, PROT_READ | PROT_WRITE, MAP_PRIVATE | MAP_POPULATE | MAP_NONBLOCK | MAP_NORESERVE, fd, 0);
if (map == MAP_FAILED) {
map = mmap(NULL, bytes, PROT_READ | PROT_WRITE, MAP_PRIVATE, fd, 0);
}
*/
} else {
map = mmap(NULL, bytes, PROT_READ | PROT_WRITE, MAP_SHARED, fd, 0);
}

View File

@ -1856,7 +1856,7 @@ subroutine pivoted_cholesky( A, rank, tol, ndim, U)
!
! matrix A is destroyed inside this subroutine
! Cholesky vectors are stored in U
! dimension of U: U(1:rank, 1:n)
! dimension of U: U(1:n, 1:rank)
! U is allocated inside this subroutine
! rank is the number of Cholesky vectors depending on tol
!