diff --git a/bin/qp_test b/bin/qp_test index 67b3ea02..288b7291 100755 --- a/bin/qp_test +++ b/bin/qp_test @@ -60,19 +60,14 @@ def main(arguments): print("Running tests for %s"%(bats_file)) print("") if arguments["-v"]: - p = None if arguments["TEST"]: test = "export TEST=%s ; "%arguments["TEST"] else: test = "" - try: - os.system(test+" python3 bats_to_sh.py "+bats_file+ + os.system(test+" python3 bats_to_sh.py "+bats_file+ "| bash") - except: - if p: - p.terminate() else: - subprocess.check_call(["bats", bats_file], env=os.environ) + subprocess.check_call(["bats", "--verbose-run", "--trace", bats_file], env=os.environ) diff --git a/configure b/configure index e70820fe..5c38b9f2 100755 --- a/configure +++ b/configure @@ -281,8 +281,8 @@ EOF execute << EOF cd "\${QP_ROOT}"/external - tar -zxf qp2-dependencies/bats-v1.1.0.tar.gz - ( cd bats-core-1.1.0/ ; ./install.sh \${QP_ROOT}) + tar -zxf qp2-dependencies/bats-v1.7.0.tar.gz + ( cd bats-core-1.7.0/ ; ./install.sh \${QP_ROOT}) EOF else diff --git a/external/qp2-dependencies b/external/qp2-dependencies index 90ee61f5..242151e0 160000 --- a/external/qp2-dependencies +++ b/external/qp2-dependencies @@ -1 +1 @@ -Subproject commit 90ee61f5041c7c94a0c605625a264860292813a0 +Subproject commit 242151e03d1d6bf042387226431d82d35845686a diff --git a/ocaml/Qputils.ml b/ocaml/Qputils.ml index 270e069f..752a65a0 100644 --- a/ocaml/Qputils.ml +++ b/ocaml/Qputils.ml @@ -56,3 +56,7 @@ let string_of_string s = s let list_map f l = List.rev_map f l |> List.rev + +let socket_convert socket = + ((Obj.magic (Obj.repr socket)) : [ `Xsub ] Zmq.Socket.t ) + diff --git a/ocaml/qp_tunnel.ml b/ocaml/qp_tunnel.ml index 84e50eb5..6885db73 100644 --- a/ocaml/qp_tunnel.ml +++ b/ocaml/qp_tunnel.ml @@ -2,7 +2,7 @@ open Qputils open Qptypes type ezfio_or_address = EZFIO of string | ADDRESS of string -type req_or_sub = REQ | SUB +type req_or_sub = REQ | SUB let localport = 42379 @@ -29,7 +29,7 @@ let () = end; let arg = - let x = + let x = match Command_line.anon_args () with | [x] -> x | _ -> begin @@ -44,7 +44,7 @@ let () = in - let localhost = + let localhost = Lazy.force TaskServer.ip_address in @@ -52,28 +52,28 @@ let () = let long_address = match arg with | ADDRESS x -> x - | EZFIO x -> - let ic = + | EZFIO x -> + let ic = Filename.concat (Qpackage.ezfio_work x) "qp_run_address" |> open_in in - let result = + let result = input_line ic |> String.trim in close_in ic; result in - + let protocol, address, port = match String.split_on_char ':' long_address with | t :: a :: p :: [] -> t, a, int_of_string p - | _ -> failwith @@ + | _ -> failwith @@ Printf.sprintf "%s : Malformed address" long_address in - let zmq_context = + let zmq_context = Zmq.Context.create () in @@ -105,10 +105,10 @@ let () = let create_socket sock_type bind_or_connect addr = - let socket = + let socket = Zmq.Socket.create zmq_context sock_type in - let () = + let () = try bind_or_connect socket addr with @@ -131,37 +131,64 @@ let () = Sys.set_signal Sys.sigint handler; - let new_thread req_or_sub addr_in addr_out = + let new_thread_req addr_in addr_out = let socket_in, socket_out = - match req_or_sub with - | REQ -> create_socket Zmq.Socket.router Zmq.Socket.bind addr_in, create_socket Zmq.Socket.dealer Zmq.Socket.connect addr_out - | SUB -> - create_socket Zmq.Socket.sub Zmq.Socket.connect addr_in, - create_socket Zmq.Socket.pub Zmq.Socket.bind addr_out in - if req_or_sub = SUB then - Zmq.Socket.subscribe socket_in ""; - - - let action_in = - match req_or_sub with - | REQ -> (fun () -> Zmq.Socket.recv_all socket_in |> Zmq.Socket.send_all socket_out) - | SUB -> (fun () -> Zmq.Socket.recv_all socket_in |> Zmq.Socket.send_all socket_out) + let action_in = + fun () -> Zmq.Socket.recv_all socket_in |> Zmq.Socket.send_all socket_out in - let action_out = - match req_or_sub with - | REQ -> (fun () -> Zmq.Socket.recv_all socket_out |> Zmq.Socket.send_all socket_in ) - | SUB -> (fun () -> () ) + let action_out = + fun () -> Zmq.Socket.recv_all socket_out |> Zmq.Socket.send_all socket_in in let pollitem = Zmq.Poll.mask_of - [| (socket_in, Zmq.Poll.In) ; (socket_out, Zmq.Poll.In) |] + [| (socket_convert socket_in, Zmq.Poll.In) ; (socket_convert socket_out, Zmq.Poll.In) |] + in + + while !run_status do + + let polling = + Zmq.Poll.poll ~timeout:1000 pollitem + in + + match polling with + | [| Some Zmq.Poll.In ; Some Zmq.Poll.In |] -> ( action_out () ; action_in () ) + | [| _ ; Some Zmq.Poll.In |] -> action_out () + | [| Some Zmq.Poll.In ; _ |] -> action_in () + | _ -> () + done; + + Zmq.Socket.close socket_in; + Zmq.Socket.close socket_out; + in + + let new_thread_sub addr_in addr_out = + let socket_in, socket_out = + create_socket Zmq.Socket.sub Zmq.Socket.connect addr_in, + create_socket Zmq.Socket.pub Zmq.Socket.bind addr_out + in + + Zmq.Socket.subscribe socket_in ""; + + + + let action_in = + fun () -> Zmq.Socket.recv_all socket_in |> Zmq.Socket.send_all socket_out + in + + let action_out = + fun () -> () + in + + let pollitem = + Zmq.Poll.mask_of + [| (socket_convert socket_in, Zmq.Poll.In) ; (socket_convert socket_out, Zmq.Poll.In) |] in @@ -173,8 +200,8 @@ let () = match polling with | [| Some Zmq.Poll.In ; Some Zmq.Poll.In |] -> ( action_out () ; action_in () ) - | [| _ ; Some Zmq.Poll.In |] -> action_out () - | [| Some Zmq.Poll.In ; _ |] -> action_in () + | [| _ ; Some Zmq.Poll.In |] -> action_out () + | [| Some Zmq.Poll.In ; _ |] -> action_in () | _ -> () done; @@ -193,8 +220,8 @@ let () = Printf.sprintf "tcp://*:%d" localport in - let f () = - new_thread REQ addr_in addr_out + let f () = + new_thread_req addr_in addr_out in (Thread.create f) () @@ -211,8 +238,8 @@ let () = Printf.sprintf "tcp://*:%d" (localport+2) in - let f () = - new_thread REQ addr_in addr_out + let f () = + new_thread_req addr_in addr_out in (Thread.create f) () in @@ -227,8 +254,8 @@ let () = Printf.sprintf "tcp://*:%d" (localport+1) in - let f () = - new_thread SUB addr_in addr_out + let f () = + new_thread_sub addr_in addr_out in (Thread.create f) () in @@ -236,7 +263,7 @@ let () = let input_thread = - let f () = + let f () = let addr_out = match arg with | EZFIO _ -> None @@ -248,22 +275,22 @@ let () = Printf.sprintf "tcp://*:%d" (localport+9) in - let socket_in = + let socket_in = create_socket Zmq.Socket.rep Zmq.Socket.bind addr_in in let socket_out = - match addr_out with + match addr_out with | Some addr_out -> Some ( create_socket Zmq.Socket.req Zmq.Socket.connect addr_out) | None -> None in - let temp_file = + let temp_file = Filename.temp_file "qp_tunnel" ".tar.gz" in - let get_ezfio_filename () = + let get_ezfio_filename () = match arg with | EZFIO x -> x | ADDRESS _ -> @@ -277,9 +304,9 @@ let () = end in - let get_input () = + let get_input () = match arg with - | EZFIO x -> + | EZFIO x -> begin Printf.sprintf "tar --exclude=\"*.gz.*\" -zcf %s %s" temp_file x |> Sys.command |> ignore; @@ -291,11 +318,11 @@ let () = in ignore @@ Unix.lseek fd 0 Unix.SEEK_SET ; let bstr = - Unix.map_file fd Bigarray.char + Unix.map_file fd Bigarray.char Bigarray.c_layout false [| len |] |> Bigarray.array1_of_genarray in - let result = + let result = String.init len (fun i -> bstr.{i}) ; in Unix.close fd; @@ -313,7 +340,7 @@ let () = end in - let () = + let () = match socket_out with | None -> () | Some socket_out -> @@ -329,7 +356,7 @@ let () = | ADDRESS _ -> begin Printf.printf "Getting input... %!"; - let ezfio_filename = + let ezfio_filename = get_ezfio_filename () in Printf.printf "%s%!" ezfio_filename; @@ -343,7 +370,7 @@ let () = |> Sys.command |> ignore ; let oc = Filename.concat (Qpackage.ezfio_work ezfio_filename) "qp_run_address" - |> open_out + |> open_out in Printf.fprintf oc "tcp://%s:%d\n" localhost localport; close_out oc; @@ -359,9 +386,9 @@ let () = let action () = match Zmq.Socket.recv socket_in with | "get_input" -> get_input () - |> Zmq.Socket.send socket_in + |> Zmq.Socket.send socket_in | "get_ezfio_filename" -> get_ezfio_filename () - |> Zmq.Socket.send socket_in + |> Zmq.Socket.send socket_in | "test" -> Zmq.Socket.send socket_in "OK" | x -> Printf.sprintf "Message '%s' not understood" x |> Zmq.Socket.send socket_in @@ -372,7 +399,7 @@ On remote hosts, create ssh tunnel using: ssh -L %d:%s:%d -L %d:%s:%d -L %d:%s:%d -L %d:%s:%d %s & Or from this host connect to clients using: ssh -R %d:localhost:%d -R %d:localhost:%d -R %d:localhost:%d -R %d:localhost:%d & -%!" +%!" (port ) localhost (localport ) (port+1) localhost (localport+1) (port+2) localhost (localport+2) @@ -392,12 +419,12 @@ Or from this host connect to clients using: match polling.(0) with | Some Zmq.Poll.In -> action () | None -> () - | Some Zmq.Poll.In_out + | Some Zmq.Poll.In_out | Some Zmq.Poll.Out -> () done; - let () = + let () = match socket_out with | Some socket_out -> Zmq.Socket.close socket_out | None -> () @@ -415,7 +442,7 @@ Or from this host connect to clients using: Thread.join ocaml_thread; Zmq.Context.terminate zmq_context; Printf.printf "qp_tunnel exited properly.\n" - + diff --git a/src/fci/40.fci.bats b/src/fci/40.fci.bats index 871de780..600217de 100644 --- a/src/fci/40.fci.bats +++ b/src/fci/40.fci.bats @@ -37,48 +37,48 @@ function run_stoch() { qp set_file b2_stretched.ezfio qp set determinants n_det_max 10000 qp set_frozen_core - run_stoch -49.14104086 0.0001 10000 + run_stoch -49.14097596 0.0001 10000 } @test "NH3" { # 0:00:11 qp set_file nh3.ezfio qp set_mo_class --core="[1-4]" --act="[5-72]" - run -56.24474790 1.e-5 10000 + run -56.24474908 1.e-5 10000 } @test "DHNO" { # 0:00:10 qp set_file dhno.ezfio qp set_mo_class --core="[1-7]" --act="[8-64]" - run -130.45901042 1.e-4 10000 + run -130.45904647 1.e-4 10000 } @test "HCO" { # 0:01:16 qp set_file hco.ezfio - run_stoch -113.41658256 2.e-3 50000 + run_stoch -113.41448940 2.e-3 50000 } @test "H2O2" { # 0:01:48 qp set_file h2o2.ezfio qp set_mo_class --core="[1-2]" --act="[3-24]" --del="[25-38]" - run_stoch -151.02317880 2.e-3 100000 + run_stoch -151.02437936 2.e-3 100000 } @test "HBO" { # 0:00:46 [[ -n $TRAVIS ]] && skip qp set_file hbo.ezfio - run_stoch -100.22361288 2.e-3 50000 + run_stoch -100.221198108988 2.e-3 50000 } @test "H2O" { # 0:01:05 [[ -n $TRAVIS ]] && skip qp set_file h2o.ezfio - run_stoch -76.24347962 1.e-4 100000 + run_stoch -76.241332121813 1.e-3 100000 } @test "ClO" { # 0:03:07 [[ -n $TRAVIS ]] && skip qp set_file clo.ezfio - run_stoch -534.58202840 1.e-3 100000 + run_stoch -534.573564655419 1.e-3 100000 } @test "SO" { # 0:01:49 diff --git a/src/iterations/print_extrapolation.irp.f b/src/iterations/print_extrapolation.irp.f index 7f602ffb..7c6dbb9b 100644 --- a/src/iterations/print_extrapolation.irp.f +++ b/src/iterations/print_extrapolation.irp.f @@ -41,7 +41,7 @@ subroutine print_extrapolated_energy enddo print *, '' - call ezfio_set_fci_energy_extrapolated(extrapolated_energy(2,1:N_states)) + call ezfio_set_fci_energy_extrapolated(extrapolated_energy(min(N_iter,3),1:N_states)) end subroutine diff --git a/tests/bats/common.bats.sh b/tests/bats/common.bats.sh index f6ea4023..802c0232 100644 --- a/tests/bats/common.bats.sh +++ b/tests/bats/common.bats.sh @@ -46,7 +46,7 @@ function test_exe() { run_only_test() { if [[ "$BATS_TEST_DESCRIPTION" != "$1" ]] && [[ "$BATS_TEST_NUMBER" != "$1" ]]; then - if [[ -z $BATS_TEST_FILENAME ]] ; then + if [[ -z "$BATS_TEST_FILENAME" ]] ; then exit 0 else skip