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QuantumPackage/src/nuclei/nuclei.irp.f

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8.9 KiB
Fortran
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Initial commit
2019-01-25 11:39:31 +01:00
BEGIN_PROVIDER [ double precision, nucl_coord, (nucl_num,3) ]
implicit none
BEGIN_DOC
! Nuclear coordinates in the format (:, {x,y,z})
END_DOC
PROVIDE ezfio_filename nucl_label nucl_charge
if (mpi_master) then
double precision, allocatable :: buffer(:,:)
nucl_coord = 0.d0
allocate (buffer(nucl_num,3))
buffer = 0.d0
logical :: has
call ezfio_has_nuclei_nucl_coord(has)
if (.not.has) then
print *, irp_here
stop 1
endif
call ezfio_get_nuclei_nucl_coord(buffer)
integer :: i,j
do i=1,3
do j=1,nucl_num
nucl_coord(j,i) = buffer(j,i)
enddo
enddo
deallocate(buffer)
character*(64), parameter :: f = '(A16, 4(1X,F12.6))'
character*(64), parameter :: ft= '(A16, 4(1X,A12 ))'
double precision, parameter :: a0= 0.529177249d0
call write_time(6)
write(6,'(A)') ''
write(6,'(A)') 'Nuclear Coordinates (Angstroms)'
write(6,'(A)') '==============================='
write(6,'(A)') ''
write(6,ft) &
'================','============','============','============','============'
write(6,*) &
' Atom Charge X Y Z '
write(6,ft) &
'================','============','============','============','============'
Interatomic distance
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Initial commit
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do i=1,nucl_num
write(6,f) nucl_label(i), nucl_charge(i), &
nucl_coord(i,1)*a0, &
nucl_coord(i,2)*a0, &
nucl_coord(i,3)*a0
enddo
write(6,ft) &
'================','============','============','============','============'
write(6,'(A)') ''
Fixed floating-point exceptions
2020-05-25 18:11:27 +02:00
if (nucl_num > 1) then
double precision :: dist_min, x, y, z
dist_min = huge(1.d0)
do i=1,nucl_num
do j=i+1,nucl_num
x = nucl_coord(i,1)-nucl_coord(j,1)
y = nucl_coord(i,2)-nucl_coord(j,2)
z = nucl_coord(i,3)-nucl_coord(j,3)
dist_min = min(x*x + y*y + z*z, dist_min)
enddo
Interatomic distance
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enddo
Fixed floating-point exceptions
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write(6,'(A,F12.4,A)') 'Minimal interatomic distance found: ', &
dsqrt(dist_min)*a0,' Angstrom'
endif
Interatomic distance
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Initial commit
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endif
IRP_IF MPI_DEBUG
print *, irp_here, mpi_rank
call MPI_BARRIER(MPI_COMM_WORLD, ierr)
IRP_ENDIF
IRP_IF MPI
include 'mpif.h'
integer :: ierr
call MPI_BCAST( nucl_coord, 3*nucl_num, MPI_DOUBLE_PRECISION, 0, MPI_COMM_WORLD, ierr)
if (ierr /= MPI_SUCCESS) then
stop 'Unable to read nucl_coord with MPI'
endif
IRP_ENDIF
END_PROVIDER
BEGIN_PROVIDER [ double precision, nucl_coord_transp, (3,nucl_num) ]
implicit none
BEGIN_DOC
! Transposed array of nucl_coord
END_DOC
integer :: i, k
nucl_coord_transp = 0.d0
do i=1,nucl_num
nucl_coord_transp(1,i) = nucl_coord(i,1)
nucl_coord_transp(2,i) = nucl_coord(i,2)
nucl_coord_transp(3,i) = nucl_coord(i,3)
enddo
END_PROVIDER
BEGIN_PROVIDER [ double precision, nucl_dist_inv, (nucl_num,nucl_num) ]
implicit none
BEGIN_DOC
! Inverse of the distance between nucleus I and nucleus J
END_DOC
integer :: ie1, ie2, l
do ie1 = 1, nucl_num
do ie2 = 1, nucl_num
if(ie1 /= ie2) then
nucl_dist_inv(ie2,ie1) = 1.d0/nucl_dist(ie2,ie1)
else
nucl_dist_inv(ie2,ie1) = 0.d0
endif
enddo
enddo
END_PROVIDER
BEGIN_PROVIDER [ double precision, nucl_dist_2, (nucl_num,nucl_num) ]
&BEGIN_PROVIDER [ double precision, nucl_dist_vec_x, (nucl_num,nucl_num) ]
&BEGIN_PROVIDER [ double precision, nucl_dist_vec_y, (nucl_num,nucl_num) ]
&BEGIN_PROVIDER [ double precision, nucl_dist_vec_z, (nucl_num,nucl_num) ]
&BEGIN_PROVIDER [ double precision, nucl_dist, (nucl_num,nucl_num) ]
implicit none
BEGIN_DOC
! nucl_dist : Nucleus-nucleus distances
! nucl_dist_2 : Nucleus-nucleus distances squared
! nucl_dist_vec : Nucleus-nucleus distances vectors
END_DOC
integer :: ie1, ie2, l
do ie2 = 1,nucl_num
do ie1 = 1,nucl_num
nucl_dist_vec_x(ie1,ie2) = nucl_coord(ie1,1) - nucl_coord(ie2,1)
nucl_dist_vec_y(ie1,ie2) = nucl_coord(ie1,2) - nucl_coord(ie2,2)
nucl_dist_vec_z(ie1,ie2) = nucl_coord(ie1,3) - nucl_coord(ie2,3)
enddo
do ie1 = 1,nucl_num
nucl_dist_2(ie1,ie2) = nucl_dist_vec_x(ie1,ie2)*nucl_dist_vec_x(ie1,ie2) +&
nucl_dist_vec_y(ie1,ie2)*nucl_dist_vec_y(ie1,ie2) + &
nucl_dist_vec_z(ie1,ie2)*nucl_dist_vec_z(ie1,ie2)
nucl_dist(ie1,ie2) = sqrt(nucl_dist_2(ie1,ie2))
enddo
enddo
END_PROVIDER
BEGIN_PROVIDER [ double precision, nuclear_repulsion ]
implicit none
BEGIN_DOC
! Nuclear repulsion energy
END_DOC
PROVIDE mpi_master nucl_coord nucl_charge nucl_num
Renamed disk_access_nuclear_repulsion
2019-07-23 14:54:03 +02:00
if (io_nuclear_repulsion == 'Read') then
Initial commit
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logical :: has
if (mpi_master) then
call ezfio_has_nuclei_nuclear_repulsion(has)
if (has) then
call ezfio_get_nuclei_nuclear_repulsion(nuclear_repulsion)
else
print *, 'nuclei/nuclear_repulsion not found in EZFIO file'
stop 1
endif
print*, 'Read nuclear_repulsion'
endif
IRP_IF MPI_DEBUG
print *, irp_here, mpi_rank
call MPI_BARRIER(MPI_COMM_WORLD, ierr)
IRP_ENDIF
IRP_IF MPI
include 'mpif.h'
integer :: ierr
call MPI_BCAST( nuclear_repulsion, 1, MPI_DOUBLE_PRECISION, 0, MPI_COMM_WORLD, ierr)
if (ierr /= MPI_SUCCESS) then
stop 'Unable to read nuclear_repulsion with MPI'
endif
IRP_ENDIF
else
integer :: k,l
double precision :: Z12, r2, x(3)
nuclear_repulsion = 0.d0
do l = 1, nucl_num
do k = 1, nucl_num
if(k == l) then
cycle
endif
Z12 = nucl_charge(k)*nucl_charge(l)
x(1) = nucl_coord(k,1) - nucl_coord(l,1)
x(2) = nucl_coord(k,2) - nucl_coord(l,2)
x(3) = nucl_coord(k,3) - nucl_coord(l,3)
r2 = x(1)*x(1) + x(2)*x(2) + x(3)*x(3)
nuclear_repulsion += Z12/dsqrt(r2)
enddo
enddo
nuclear_repulsion *= 0.5d0
point charges work
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if(point_charges)then
Fixed the pt_charges bug: + added the pt_charges integrals to the usual v_ne + added only the nuclei_pt_charge interaction to the usual nuclear_repulsion (and not the pt_charge_pt_charge interaction)
2023-06-12 13:36:01 +02:00
print*,'bear nuclear repulsion = ',nuclear_repulsion
print*,'adding the interaction between the nuclein and the point charges'
print*,'to the usual nuclear repulsion '
nuclear_repulsion += pt_chrg_nuclei_interaction
print*,'new nuclear repulsion = ',nuclear_repulsion
print*,'WARNING: we do not add the interaction between the point charges themselves'
point charges work
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endif
Initial commit
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end if
call write_time(6)
call write_double(6,nuclear_repulsion,'Nuclear repulsion energy')
Renamed disk_access_nuclear_repulsion
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if (io_nuclear_repulsion == 'Write') then
Initial commit
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if (mpi_master) then
call ezfio_set_nuclei_nuclear_repulsion(nuclear_repulsion)
endif
endif
END_PROVIDER
BEGIN_PROVIDER [ character*(4), element_name, (0:127)]
&BEGIN_PROVIDER [ double precision, element_mass, (0:127) ]
implicit none
BEGIN_DOC
! Array of the name of element, sorted by nuclear charge (integer)
END_DOC
integer :: iunit, i
integer, external :: getUnitAndOpen
Fixed conversion
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character*(1024) :: filename
Initial commit
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if (mpi_master) then
call getenv('QP_ROOT',filename)
filename = trim(filename)//'/data/list_element.txt'
iunit = getUnitAndOpen(filename,'r')
element_mass(:) = 0.d0
do i=0,127
write(element_name(i),'(I4)') i
enddo
character*(80) :: buffer, dummy
do
Improve thread-safety
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read(iunit,'(A80)',end=10) buffer
read(buffer,*) i ! First read i
read(buffer,*) i, element_name(i), dummy, element_mass(i)
enddo
10 continue
close(10)
endif
Initial commit
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IRP_IF MPI_DEBUG
print *, irp_here, mpi_rank
call MPI_BARRIER(MPI_COMM_WORLD, ierr)
IRP_ENDIF
IRP_IF MPI
include 'mpif.h'
integer :: ierr
call MPI_BCAST( element_name, 128*4, MPI_CHARACTER, 0, MPI_COMM_WORLD, ierr)
if (ierr /= MPI_SUCCESS) then
stop 'Unable to read element_name with MPI'
endif
call MPI_BCAST( element_mass, 128, MPI_DOUBLE_PRECISION, 0, MPI_COMM_WORLD, ierr)
if (ierr /= MPI_SUCCESS) then
stop 'Unable to read element_name with MPI'
endif
IRP_ENDIF
END_PROVIDER
BEGIN_PROVIDER [ double precision, center_of_mass, (3) ]
implicit none
BEGIN_DOC
! Center of mass of the molecule
END_DOC
integer :: i,j
double precision :: s
center_of_mass(:) = 0.d0
s = 0.d0
do i=1,nucl_num
do j=1,3
center_of_mass(j) += nucl_coord(i,j)* element_mass(int(nucl_charge(i)))
enddo
s += element_mass(int(nucl_charge(i)))
enddo
s = 1.d0/s
center_of_mass(:) = center_of_mass(:)*s
END_PROVIDER
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