---
title: "Multiple dataset"
date: 2019-09-27 16:41
draft: false
---
<link rel="stylesheet" type="text/css" href="/css/modal.css" />
<link rel="stylesheet" type="text/css" href="/css/form.css" />
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<script src="https://unpkg.com/simple-statistics@7.0.2/dist/simple-statistics.min.js"></script>
<script src="https://cdn.jsdelivr.net/npm/bowser@2.5.3/es5.min.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/js-yaml/3.13.1/js-yaml.min.js"></script>
<script src="/js/numberUtils.js"></script>
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  async function loadFiles() {
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    var chks = []
    proms = []
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    for (const subproms of proms) {
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      for (const doi of uniq(sub.map(d => d.DOI.string))) {
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        for (mol of uniq(subdoi.map(d => d.molecule))) {
          const submol = subdoi.filter(d => d.molecule === mol)
          const source = submol.find((d) => {
            if (d.DOI.string === "10.1021/acs.jctc.8b01205") {
              return d.method.name === "CASPT2" && d.method.basis === "aug-cc-pVDZ"
            } else {
              return d.method.isTBE
            }
          })
          if (source !== undefined) {
            for (dat of submol.filter((d) => d !== source)) {
              dat.CopyExcitationsTypeFrom(source)
            }
          }
        }
      }

      window.defaultDats = window.defaultDats.concat(sub)
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    processingIndicator.isActive = false
    reloadCustomFiles()
  }
  async function reloadCustomFiles() {
    window.dats = window.defaultDats;
    const kinds = new Map([["file_abs", VertExcitationKinds.Absorbtion], ["file_fluo", VertExcitationKinds.Fluorescence]])
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    reloadSelect("DOI")
  }
  async function clearSelect(BeforeName = null) {
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  function getAllSelect() {
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  function getAllSelectAfter(Name, include = false) {
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  function getAllSelectBefore(Name, include = false) {
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    const fillArray = ["molecule"]
    if (fillArray.includes(afters.prop("name"))) {
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    var submit = $(e.target.form).find(':submit')
    submit.prop("disabled", !isLast)

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        break;
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        return data[name]
        break;
    }
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        }
        else {
          const key = JSON.parse(strkey)
          const newkey = JSON.stringify([key[0].name, key[1]])
          const newkeybasis = JSON.stringify(key[0].basis)
          if (!sdatdic2.has(newkey)) {
            sdatdic2.set(newkey, new Map())
          }
          if (!sdatdic2.get(newkey).has(newkeybasis)) {
            sdatdic2.get(newkey).set(newkeybasis, new Map())
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          for (const [strkey2, exval] of sdat) {
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          }
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          for (const [key2, exval] of sdat) {
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        }
      }
    }
    var graphdat = []
    for (const [keystr, vals] of sdic) {
      row = $("<tr/>")
      key = JSON.parse(keystr)
      if (!combbasis) {
        Reflect.setPrototypeOf(key[0], method.prototype)
      }
      //Reflect.setPrototypeOf(key[1], DOI.prototype)
      th = $("<th/>", { scope: "column" })
      const [meth, doi] = key
      th.clone().text(meth.toString("\n").split('-').join('\u2011')).appendTo(row)
      var thdoi = th.clone()
      var publi = doiCache.get(doi, true)
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      }
      $(stb).append(row)
      var box = {
        x: noNanVals,
        amean: ss.mean(avals).toFixed(3),
        name: key[0].toString() + " MAD : " + ss.mean(avals).toPrecision(4),
        type: 'box',
        boxmean: 'sd'
      };
      graphdat.push(box)
    }
    var layout = {
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      plot_bgcolor: 'rgba(0,0,0,0)',
      gap: 0,
      legend: {
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      xaxis: {
        title: {
          text: 'Energy (eV)',
        }
      },
      bgcolor: '#E2E2E2',
      bordercolor: '#FFFFFF',
      borderwidth: 2,
      // autosize: false,
      width: 850,
      height: 500,
      margin: {
        l: 0,
        r: 10,
        b: 15,
        t: 20,
        pad: 0,
      },
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      exVertKind: Array.from(Array.from($("#cb_exVertKindList>li>input[type=checkbox]:checked")).map(el => parseInt(el.value))).reduce((pv, cv) => pv + cv, 0),
      T1: {
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        max: parseFloat($("#T1max").val())
      }
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        delete (val)
      })
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    var dois = new Set(window.filtData.map((d) => d.DOI.string))
    var mols = new Set(window.filtData.map((d) => d.molecule))
    await window.doiCache.addRange(dois)
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      for (const mol of mols) {
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            } else if (d1.method.name === "TBE" && d2.method.name === "TBE(FC)") {
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            }
            else {
              return 0
            }
          }
        })
        if (TBESortdat.length > 0 && TBESortdat[0].method.isTBE) {
          for (const exc of TBESortdat[0].excitations) {
            window.T1ref.get(doi).get(mol).set(JSON.stringify((exc.initial, exc.final)), exc.T1)
          }
        }
      }
    }
    var data = $("#data")
    $(data).empty();
    if (window.filtData.length > 0) {
      const sets = (await getPublis()).sets
      for (const doi of doiCache.keys()) {
        paperdata = window.filtData.filter((d) => {
          return d.DOI.string == doi
        })
        var methods = uniq(paperdata.map(d => d.method))
        const sortedMethods = methods.sort((a, b) => {
          if (a.isTBE && !b.isTBE) {
            return -1
          }
          else if (a.isTBE && b.isTBE) {
            if (a.basis !== "CBS" && b.basis === "CBS") {
              return -1
            }
            else {
              return 1
            }
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          else if (!a.isTBE && b.isTBE) {
            return 1
          }
          else {
            return 0
          }
        })
        var div = $('<div/>').appendTo(data)
        $("<h1/>").text(sets.get(doi)).appendTo(div)
        var table = $("<table/>").addClass("datatable").appendTo(div)
        var head = $("<tr/>")
        $("<thead/>").addClass("sticky").append(head).appendTo(table)
        var tbody = $("<tbody/>").appendTo(table)
        var th = $("<th/>", { scope: "column" })
        head.append(["Molecule", "Transition"].map(x => th.clone().text(x)))
        head.append(sortedMethods.map(x => th.clone().text(x.toString("\n").split('-').join('\u2011'))))
        adjustSticky();
        datadic = new Map()
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          const myT1s = T1ref.get(dat.DOI.string).get(dat.molecule)
          if (!datadic.has(key1)) {
            datadic.set(key1, new Map())
          }
          const key3 = JSON.stringify(dat.method)
          for (const ex of dat.excitations) {
            Reflect.setPrototypeOf(ex.type, excitationType.prototype)
            var allowT1 = false
            const T1Key = JSON.stringify((ex.initial, ex.final))
            const T1range = filterParams.T1
            if (T1range.min === 0 && T1range.max === 100) {
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                allowT1 = true
              }
            }
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              const key2 = JSON.stringify([ex.initial, ex.final, ex.type, ex.VertExcitationKind])
              if (!datadic.get(key1).has(key2)) {
                datadic.get(key1).set(key2, new Map())
              }
              datadic.get(key1).get(key2).set(key3, [ex.value, ex.isUnsafe])
            }
          }
        }
        for (const [molecule, moldat] of datadic.entries()) {
          var printmol = true;
          for (const [jsonex, exdat] of moldat.entries()) {
            const ex = JSON.parse(jsonex)
            Reflect.setPrototypeOf(ex[0], state.prototype)
            Reflect.setPrototypeOf(ex[1], state.prototype)
            Reflect.setPrototypeOf(ex[2], excitationType.prototype)
            Reflect.setPrototypeOf(ex[3], VertExcitationKind.prototype)
            var tr = $("<tr/>")
            if (printmol) {
              $("<th/>", { scope: "row", rowspan: moldat.size }).text(molecule).appendTo(tr)
              printmol = false
            }
            var Vertkindtext = ""
            if (ex[3].Value == VertExcitationKinds.Fluorescence.Value) {
              Vertkindtext = String.raw`[\mathrm{F}]`
            }
            desctex=""
            if (ex[2].description.string) {
              desctex = "(" + ex[2].description.string + ")"
            }
            $("<th/>", { scope: "rowgroup" }).text(MathJaxUtils.getMathJaxString(String.raw`${ex[0].toLaTeX()} \rightarrow ${ex[1].toLaTeX()} ${Vertkindtext} ${desctex}`)).appendTo(tr)
            var entries = Array.from(exdat.entries())
            for (const method of sortedMethods) {
              td = $("<td/>").addClass("NumberCell")
              kv = entries.find(x => {
                return JSON.stringify(method) == x[0]
              })
              if (kv !== undefined) {
                const [val, unsafe] = kv[1]
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                  td.append($("<span/>", { title: "unsafe value", role: "img", "aria-label": "Warning" }).addClass("emoji").text('⚠'))
                }
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                  td.append($("<s/>").append(val.toString()))
                }
                else {
                  td.append(val.toString())
                }
              }
              tr.append(td)
            }
            tbody.append(tr)
          }
        }
      }
      await MathJax.typesetPromise()
    }
    await reloadRef()
  }
  async function reloadRef() {
    const combbasis = $("#cb_combbasis").is(':checked')
    $(sel_ref).empty()
    for (const el of uniq(window.filtData.map(d => [d.method, d.DOI.string]))) {
      op = $("<option/>", {
        value: JSON.stringify(el)
      }).text(el[0])
      if (el[0].name.includes("TBE")) {
        $(sel_ref).prepend(op)
      }
      else {
        $(sel_ref).append(op)
      }
    }
    $(sel_ref).prop("selectedIndex", 0);
    $(sel_ref).trigger("change")
  }
  async function submitdat() {
    window.onbeforeunload = () => { return ''; }
    await reloadContent();
  }
</script>
{{< getDataFilesName >}}
<noscript>
  <p style="background-color: red; color: white; font-size: 20; font-weight: bold;">
    <span role="img" aria-label="Warning" class="emoji">⚠</span>
    <span>This website work only if JavaScript is enable. You must enable
      JavaScript.
      <a href="https://www.enable-javascript.com/" target="_blank">How to enable JavaScript ?</a></span>
  </p>
</noscript>
<p>
  In this page you can compare multiple dataset and have somme statistics to evaluate method or basis accuracy.
  For this follow this steps
  <ol>
    <li>Add custom files</li>
    <ul>
      <li>Absorption</li>
      <li>Fluorescence</li>
    </ul>
    <li>Choose each parameter (of course you can select multiples values for each) you can use the the <buttongit
        disabled>Select all</button> button to select all items <span hidden
          data-needbrowser='{"Engine":["WebKit","Blink"],"Platform":["desktop"]}'>or use the <kbd
            data-needbrowser='{"OS":["MacOS"]}'>⌘</kbd><kbd
            data-neednotbrowser='{"OS":["MacOS"]}'>Ctrl</kbd>+<kbd>A</kbd> shortcut key</span></li>
    <ul id="SelectList"></ul>
    <li>Choose filters:</li>
    <ul>
      <li>Choose what kind of vertical excitations you want</li>
      <ul id="exVertKindList"></ul>
      <li>Choose other excitation parameters you want</li>
      <ul id="exTypeList"></ul>
      <li>Choose if you want to include unsafe values in statistics</li>
      <li>Chse the range of %T1 range using the two number box</li>
    </ul>
    <li>Choose parameters for the statistics</li>
    <ul>
      <li>Choose if you want to combine basis sets in the statistics</li>
      <li>Select a reference from <strong>already selected data</strong> (by default first is selected -it's the <abbr
          title="Theoretical best estimate">TBE</abbr> if present- is already selected)</li>
    </ul>
    <li>Now you can see the list of selected data and some statistics about these data</li>
  </ol>
</p>
<form id="form_dat" action="javascript:submitdat()" method="post">
  <fieldset>
    <legend>Import custom files</legend>
    <div>
      <label for="absFiles_input">Add custom absorption data files</label>
      <input type="file" multiple onchange="reloadCustomFiles()" id="absFiles_input" name="file_abs"></input>
    </div>
    <div>
      <label for="fluoFiles_input">Add custom fluorescence data files</label>
      <input type="file" multiple onchange="reloadCustomFiles()" id="fluoFiles_input" name="file_fluo"></input>
    </div>
  </fieldset>
  <fieldset class="table">
    <legend>Data selection</legend>
    <div style="display: inline-block;">
      <label for="DOI_select">Sets</label>
      <button class="SelectAll" type="button" onclick="selectSelectAll_click(event)">Select all</button>
      <select multiple id="DOI_select" name="DOI" onchange="reloadNextSelect(event)"></select>
    </div>
    <div style="display:inline-block">
      <label for="mol_select">Molecules</label>
      <button class="SelectAll" type="button" onclick="selectSelectAll_click(event)">Select all</button>
      <select multiple id="mol_select" name="molecule" onchange="reloadNextSelect(event)"></select>
    </div>
    <br />
    <div style="display: inline-block;">
      <label for="method_select">Methods</label>
      <button class="SelectAll" type="button" onclick="selectSelectAll_click(event)">Select all</button>
      <select multiple id="method_select" name="method" onchange="reloadNextSelect(event)"></select>
    </div>
    <div style="display: inline-block;">
      <label for="basis_select">Basis sets</label>
      <button class="SelectAll" type="button" onclick="selectSelectAll_click(event)">Select all</button>
      <select multiple id="basis_select" name="basis" onchange="reloadNextSelect(event)"></select>
    </div>
  </fieldset>
  <fieldset>
    <legend>Vertical excitation kind</legend>
    <ul class="nestedCbList" style="padding-left: 0em;">
      <li>
        <input type="checkbox" checked onchange="nestedCheckbox_change(event)" id="cb_fileType_All"></input>
        <label for="cb_fileType_All"> All</label>
      </li>
      <ul class="nestedCbList" id="cb_exVertKindList">
        <li>
          <input type="checkbox" onchange="nestedCheckbox_change(event)" id="cb_abs" value="1" name="datatype">
          <label for="cb_abs">Absorption</label>
        </li>
        <li>
          <input type="checkbox" onchange="nestedCheckbox_change(event)" id="cb_fluo" value="2" name="datatype">
          <label for="fluo">Fluorescence</label>
      </ul>
      </li>
  </fieldset>
  <fieldset id="excitationFilter">
    <legend>Filters</legend>
    <ul class="nestedCbList" style="padding-left: 0em;">
      <li>
        <input type="checkbox" onchange="nestedCheckbox_change(event)" id="cb_exType_All"></input>
        <label for="cb_exType_All"> All</label>
      </li>
      <ul id="cb_exTypeList" class="nestedCbList">
      </ul>
      <li id="li_cb_unsafe">
        <input type="checkbox" id="cb_unsafe" name="unsafe">
        <label for="cb_unsafe">Unsafe</label>
      </li>
  </fieldset>
  <fieldset>
    <legend>%T1</legend>
    <input class="range min" airia-label="Minimum value" type="number" id="T1min" step="0.01"
      onchange="numberRangeChange(event)" min="0" value="0">
    <span>\(\leq \mathrm{\%T1} \leq\)</span>
    <input class="range max" airia-label="Maximum value" type="number" id="T1max" step="0.01"
      onchange="numberRangeChange(event)" max="100" value="100">
  </fieldset>
  <input type="submit" disabled=true value="Load"></input>
</form>
<form id="form_ref">
  <legend>Statistics</legend>
  <div>
    <input type="checkbox" id="cb_combbasis" onchange="reloadRef()">
    <label for="cb_combbasis">Combine basis sets</label>
  </div>
  <div>
    <label for="sel_ref">Reference</label>
    <select id="sel_ref" onchange="reloadStat()"></select>
  </div>
</form>
<section id="data">
</section>
<section>
  <table id="stat_table" class="datatable">
    <thead class="sticky">
      <th scope="col">Method</th>
      <th scope="col">Set</th>
      <th scope="col">Count</th>
      <th scope="col">Min</th>
      <th scope="col">Max</th>
      <th scope="col"><abbr title="Mean signed error">MSE</abbr></th>
      <th scope="col"><abbr title="Mean absolute error">MAE</abbr></th>
      <th scope="col">Median</th>
      <th scope="col">Absolute Median</th>
      <th scope="col"><abbr title="Root-mean square error ">RMSE</abbr></th>
      <th scope="col">Variance</th>
      <th scope="col"><abbr title="Standard deviation of the errors">SDE</abbr></th>
    </thead>
    <tbody>
    </tbody>
    <div id="graph_div"></div>
  </table>
</section>
{{< waitModal >}}