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https://github.com/LCPQ/QUESTDB_website.git
synced 2024-12-24 13:23:40 +01:00
Treat commands in excitation
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parent
c661067e49
commit
4900ad296a
@ -26,6 +26,6 @@ if DEBUG:
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datapath=datapath/"test"
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if not datapath.exists():
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datapath.mkdir()
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datalst=dataFileBase.readFromTable(dat,format=Format[args.format],default=dataType[args.defaultType])
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datalst=dataFileBase.readFromTable(dat,format=Format[args.format],default=dataType[args.defaultType],commands=commands)
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for data in datalst:
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data.toFile(datapath)
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@ -1,4 +1,6 @@
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from collections import OrderedDict
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from TexSoup import TexSoup
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from .LaTeX import newCommand
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from enum import IntEnum,auto,unique,IntFlag
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from .Format import Format
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import re
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@ -34,11 +36,15 @@ class dataFileBase(object):
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pass
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@staticmethod
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def convertState(StateTablelist,default=dataType.ABS,firstState=state(1,1,"A_1")):
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def convertState(StateTablelist,default=dataType.ABS,firstState=state(1,1,"A_1"),commands=[]):
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tmplst=[]
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for TexState in StateTablelist:
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lst=list(TexState.find("$").contents)
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st=str(lst[0])
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math=TexState.find("$")
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dec=math.contents
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lst=list(math.contents)
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mathsoup=TexSoup(str(lst[0]))
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newCommand.runAll(mathsoup,commands)
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st=str(mathsoup)
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m=re.match(r"^\^(?P<multiplicity>\d)(?P<symm>[^\s\[(]*)\s*(?:\[(?:\\mathrm{)?(?P<special>\w)(?:})\])?\s*\((?P<type>[^\)]*)\)",st)
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seq=m.group("multiplicity","symm")
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spgrp=m.group("special")
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@ -56,7 +62,7 @@ class dataFileBase(object):
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return lst
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@staticmethod
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def readFromTable(table,format=Format.LINE,default=dataType.ABS ,firstState=state(1,1,"A_1")):
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def readFromTable(table,format=Format.LINE,default=dataType.ABS ,firstState=state(1,1,"A_1"),commands=[]):
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datalist=list()
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switcher={
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dataType.ABS:AbsDataFile,
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@ -68,7 +74,7 @@ class dataFileBase(object):
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col=table[:,col]
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mymolecule=str(col[0])
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mymethod=method(str(col[2]),str(col[1]))
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finsts=dataFileBase.convertState(table[3:,0],firstState)
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finsts=dataFileBase.convertState(table[3:,0],firstState,commands=commands)
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datacls=dict()
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for index,cell in enumerate(col[3:]):
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if str(cell)!="":
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@ -100,7 +106,7 @@ class dataFileBase(object):
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col=table[:,col]
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mymolecule=str(table[first,0])
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mymethod=method(str(col[1]),str(col[0]))
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finsts=dataFileBase.convertState(table[first:last+1,1],default=default,firstState=firstState)
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finsts=dataFileBase.convertState(table[first:last+1,1],default=default,firstState=firstState,commands=commands)
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for index,cell in enumerate(col[first:last+1]):
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if str(cell)!="":
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val= list(cell.contents)[0]
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@ -130,7 +136,7 @@ class dataFileBase(object):
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datacls=dict()
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mymolecule=str(table[first,0])
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mymethod=(method("TBE"),method("TBE-corr"))
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finsts=dataFileBase.convertState(table[first:last+1,1],default=default,firstState=firstState)
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finsts=dataFileBase.convertState(table[first:last+1,1],default=default,firstState=firstState,commands=commands)
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for index,row in enumerate(table[first:last+1,]):
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def toFloat(x):
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try:
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