2019-11-12 14:36:23 +01:00
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#!/usr/bin/env python
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import sys
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import re
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import numpy as np
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from pathlib import Path
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from lib import LaTeX
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from TexSoup import TexSoup
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from lib.data import AbsDataFile,ZPEDataFile,FluoDataFile,dataType
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import argparse
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2019-11-12 15:21:15 +01:00
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DEBUG=False
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2019-11-12 14:36:23 +01:00
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parser = argparse.ArgumentParser()
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parser.add_argument('--file', type=argparse.FileType('r'))
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parser.add_argument('--type', type=str, choices=[t.name for t in list(dataType)])
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args = parser.parse_args()
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print(args)
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lines=args.file.readlines()
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soup=TexSoup(lines)
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commands=[LaTeX.newCommand(cmd) for cmd in soup.find_all("newcommand")]
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dat=LaTeX.tabularToData(soup.tabular,commands)
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scriptpath=Path(sys.argv[0]).resolve()
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datapath=scriptpath.parents[1]/"static"/"data"
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if DEBUG:
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datapath=datapath/"test"
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if not datapath.exists():
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datapath.mkdir()
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switcher={
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dataType.ABS: AbsDataFile,
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dataType.FLUO: FluoDataFile,
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dataType.ZPE: ZPEDataFile
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}
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filecls=switcher.get(dataType[args.type])
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for col in range(3,np.size(dat,1)):
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filecls.readFromTable(dat,col).toFile(datapath)
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