Updated Tutorial (markdown)

Tutorial.md

@@ -4,7 +4,7 @@ For example::
 `source $HOME/quantum_package/quantum_package.rc`
 
 
-##Ensure all required binaries are compiled
+## Ensure all required binaries are compiled
 
 This command will compile everything and install the `Hartree-Fock` and `Full-CI` module
 
@@ -13,7 +13,7 @@ This command will compile everything and install the `Hartree-Fock` and `Full-CI
   qp_module.py install Full_CI_ZMQ
   ninja
 ```
-#Create the EZFIO input file
+# Create the EZFIO input file
 
 The EZFIO is a hierarchical data format which uses the hierarchy of the file system to organize the data. The EZFIO file is a database which will contain the input and output data. To access the data in the EZFIO file, you can use the provided API, or tools such as `qp_edit`, or even look at the files present in the directories.
 
@@ -45,7 +45,7 @@ To generate ``hcn.ezfio`` in the 6-31G basis set, we use::
 
 You can edit interactively the EZFIO file with all the options available for all the binaries installed using the `qp_edit` command.
 
-#Run the SCF and Full-CI calculations
+# Run the SCF and Full-CI calculations
 
 First, create the canonical MOs by running an SCF calculation::
 ```
@@ -77,12 +77,13 @@ Then run the SCF
 The expected SCF energy is -92.8832967.
 
 We want to run the selected Full-CI calculation in the valence only. For this, we will use the ``qp_set_mo_class`` utility. The options are
-
+```
 -act range     Range of active orbitals
 -core range    Range of core orbitals
 -del range     Range of deleted orbitals
 -inact range   Range of inactive orbitals
 -virt range    Range of virtual orbitals
+```
 
 We set 2 first canonical orbitals as `core` and all the remaining MOs are set as active ::
 ```